##fileformat=VCFv4.1 ##FILTER= ##fileDate=20170316 ##source=strelka ##source_version=2.7.1 ##startTime=Thu Mar 16 09:38:25 2017 ##cmdline=/kfs/knosys00/public/opt/strelka-2.7.1.centos5_x86_64/bin/configureStrelkaGermlineWorkflow.py --bam=3403_16/sorted.bam --bam=3404_16/sorted.bam --bam=3405_16/sorted.bam --bam=3422_16/sorted.bam --referenceFasta=/kfs/knosys00/public/hg19bundle/ucsc.hg19.fasta --exome ##reference=file:///kfs/knosys00/public/hg19bundle/ucsc.hg19.fasta ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##content=strelka germline small-variant calls ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##INFO= ##INFO= ##bcftools_viewVersion=1.2+htslib-1.2.1 ##bcftools_viewCommand=view -c 1 -s 3422_16 sample.vcf #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 3422_16 chr1 887801 . A G 2025 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:15:0,35:0,19:0,16:-53.9:PASS:370,105,0 chr1 888639 . T C 979 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:5:0,19:0,5:0,14:-21.1:PASS:292,57,0 chr1 888659 . T C 855 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:7:0,14:0,4:0,10:-19.2:PASS:230,42,0 chr1 897325 . G C 1559 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:10:0,42:0,21:0,21:-67:PASS:370,126,0 chr1 900505 . G C 1389 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:17:0,38:0,24:0,14:-47:PASS:370,114,0 chr1 909238 . G C 940 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:13:0,31:0,22:0,9:-33.5:PASS:370,93,0 chr1 909309 . T C 987 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:11:0,42:0,26:0,16:-54.5:PASS:370,126,0 chr1 911916 . C T 526 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:12:0,19:0,9:0,10:-34.5:PASS:309,57,0 chr1 914876 . T C 1298 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:8:0,19:0,13:0,6:-27.4:PASS:317,57,0 chr1 915227 . A G 2230 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:32:0,52:0,27:0,25:-76.5:PASS:370,157,0 chr1 916549 . A G 648 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:6:0,28:0,5:0,23:-22.7:PASS:370,84,0 chr1 917492 . C T 263 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:6:0,14:0,7:0,7:-29.2:PASS:255,42,0 chr1 949654 . A G 2831 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:15:0,60:0,31:0,29:-88.3:PASS:370,181,0 chr1 979556 . G A 266 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:150:25:12:11,14:6,6:5,8:-19.1:PASS:186,0,152 chr1 982994 . T C 1369 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:5:0,19:0,9:0,10:-34.6:PASS:310,57,0 chr1 1007203 . A G 227 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:3:0,7:0,4:0,3:-15.5:PASS:148,21,0 chr1 1021346 . A G 823 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:9:0,27:0,13:0,14:-45.3:PASS:370,81,0 chr1 1158631 . A G 1749 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:11:0,41:0,20:0,21:-63.6:PASS:370,123,0 chr1 1247494 . T C 1318 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:7:0,20:0,16:0,4:-22.3:PASS:317,60,0 chr1 1249187 . G A 2650 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:16:0,50:0,25:0,25:-76.1:PASS:370,150,0 chr1 1254841 . C G 1463 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:9:0,26:0,11:0,15:-38.5:PASS:370,78,0 chr1 1269554 . T C 2140 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:7:0,42:0,19:0,23:-61.1:PASS:370,126,0 chr1 1277533 . T C 992 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:6:0,18:0,10:0,8:-32.6:PASS:297,54,0 chr1 1342394 . G A 327 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:106:16:5:8,8:4,4:4,4:-15.8:PASS:140,0,134 chr1 1479333 . A G 1026 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:153:35:13:17,18:8,6:9,12:-16:PASS:187,0,177 chr1 1551927 . T C 184 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:17:17:9:4:1,8:0,5:1,3:-15.1:PASS:159,0,14 chr1 1599812 . C T 421 PASS SNVHPOL=2;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:62:36:5:26,10:15,8:11,2:-6:PASS:97,0,273 chr1 1599888 . A G 641 PASS SNVHPOL=5;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:41:5:32,9:13,7:19,2:-0.2:PASS:66,0,334 chr1 1635004 . T C 1118 PASS SNVHPOL=5;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:6:0,35:0,25:0,10:-37.1:PASS:370,105,0 chr1 1635565 . C T 294 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:96:63:35:14:25,10:11,6:14,4:-8.4:PASS:98,0,266 chr1 1635749 . C A 396 PASS SNVHPOL=6;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:61:37:9:27,10:16,6:11,4:-10.6:PASS:95,0,293 chr1 1636044 . G A 1066 PASS SNVHPOL=2;MQ=52;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:19:0,31:0,13:0,18:-43.8:PASS:370,93,0 chr1 1636355 . A G 63 PASS SNVHPOL=2;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:47:25:4:15,10:5,0:10,10:3.5:PASS:82,0,186 chr1 1636400 . G A 20 PASS SNVHPOL=3;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:53:20:24:1:17,7:5,0:12,7:3.5:PASS:54,0,208 chr1 1638925 . C T 275 PASS SNVHPOL=2;MQ=43;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:94:15:6:7,8:2,3:5,5:-12.5:PASS:129,0,123 chr1 1638994 . C T 226 PASS SNVHPOL=4;MQ=39;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:66:13:2:5,8:1,0:4,8:0.7:PASS:101,0,83 chr1 1647814 . T C 709 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:93:14:65,28:29,22:36,6:2.4:PASS:135,0,370 chr1 1647871 . T C 949 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:100:25:64,36:28,16:36,20:-19.8:PASS:190,0,370 chr1 1647893 . C CTTTCTT 2529 PASS CIGAR=1M6I;RU=TTTCTT;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:550:507:116:66,37:20,16:46,21:PASS:547,0,999 chr1 1650787 . T C 1082 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:289:256:116:8:69,47:36,35:33,12:-12:PASS:290,0,370 chr1 1650797 . A G 1111 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:238:117:6:71,46:37,34:34,12:-11.3:PASS:272,0,370 chr1 1650801 . T C 1143 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:292:259:110:11:64,46:35,34:29,12:-14.9:PASS:293,0,370 chr1 1650832 . A G 1349 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:349:316:121:9:67,54:30,35:37,19:-22.3:PASS:351,0,370 chr1 1650845 . G A 373 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:117:11:89,28:52,11:37,17:3.2:PASS:66,0,370 chr1 1666251 . G A 348 PASS SNVHPOL=5;MQ=45;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:31:6:25,6:6,4:19,2:-0.4:PASS:66,0,287 chr1 1686040 . G T 241 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:114:25:7:13,12:7,4:6,8:-14.7:PASS:149,0,162 chr1 1887091 . CG C 500 PASS CIGAR=1M1D;RU=G;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:134:91:39:23,10:8,5:15,5:PASS:131,0,364 chr1 1887111 . GC G 470 PASS CIGAR=1M1D;RU=C;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:103:69:33:24,9:9,4:15,5:PASS:100,0,384 chr1 1887245 . G A 263 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:31:3:18,12:6,3:12,9:-12.8:PASS:144,0,207 chr1 1888193 . C A 221 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:72:16:6:10,6:5,3:5,3:-10.7:PASS:107,0,158 chr1 1957037 . T C 2673 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:15:0,56:0,20:0,36:-63.9:PASS:370,169,0 chr1 2319720 . C T 558 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:58:9:32,26:17,13:15,13:-23.5:PASS:216,0,283 chr1 2340200 . T C 1575 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:13:0,23:0,8:0,15:-33:PASS:356,69,0 chr1 2430617 . C T 1158 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:12:0,27:0,9:0,18:-34.8:PASS:370,81,0 chr1 2435451 . C T 134 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:53:12:5:8,4:4,2:4,2:-9.7:PASS:88,0,135 chr1 2452569 . T C 1444 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:9:0,46:0,22:0,24:-67.9:PASS:370,138,0 chr1 2526746 . A G 871 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:44:35:12:25,10:9,9:16,1:2.4:PASS:79,0,270 chr1 2535613 . C A 1674 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:249:84:29:45,39:18,13:27,26:-24.3:PASS:283,0,353 chr1 2541269 . A G 775 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:137:30:8:13,17:6,6:7,11:-16.9:PASS:187,0,134 chr1 2560882 . G A 329 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:158:59:26:34,24:16,8:18,16:-14.5:PASS:193,0,302 chr1 2560903 . T G 473 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:212:51:32:24,27:10,8:14,19:-18.2:PASS:249,0,213 chr1 2573199 . A G 1259 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:9:0,15:0,7:0,8:-28.3:PASS:266,45,0 chr1 2938265 . C T 1168 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:8:0,21:0,11:0,10:-36.4:PASS:335,63,0 chr1 2938407 . CAGA C 2106 PASS CIGAR=1M3D;RU=AGA;REFREP=2;IDREP=1;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:103:103:34:0,34:0,18:0,16:PASS:790,106,0 chr1 2938697 . T G 1853 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:7:0,38:0,27:0,11:-41.1:PASS:370,114,0 chr1 3313108 . C T 221 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:163:39:9:19,20:13,17:6,3:-11.2:PASS:198,0,189 chr1 3328358 . T C 1231 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:13:0,25:0,11:0,14:-40.1:PASS:370,75,0 chr1 3328659 . C T 901 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:42:20:25,17:17,10:8,7:-18.6:PASS:165,0,247 chr1 3383898 . A G 1185 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:11:0,19:0,4:0,15:-22.3:PASS:310,57,0 chr1 3394456 . T C 1320 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:12:0,25:0,17:0,8:-30.4:PASS:370,75,0 chr1 3395039 . G A 1461 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:13:0,45:0,22:0,23:-69.2:PASS:370,135,0 chr1 3413868 . C G 650 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:21:21:8:3:0,8:0,1:0,7:-9.4:PASS:172,24,0 chr1 3416449 . C A 993 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:6:0,18:0,5:0,13:-23.6:PASS:301,54,0 chr1 3496417 . G A 174 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:14:3:8,6:5,2:3,4:-10.5:PASS:120,0,137 chr1 3496479 . T C 395 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:43:10:2:7,3:1,1:6,2:-8:PASS:77,0,123 chr1 3544188 . G C 418 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:47:12:26,21:12,9:14,12:-19.5:PASS:191,0,248 chr1 3548136 . T C 923 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:6:0,23:0,13:0,10:-37.7:PASS:361,69,0 chr1 3638674 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:18:0,64:0,37:0,27:-81.6:PASS:370,193,0 chr1 3669201 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:259:259:87:14:0,87:0,45:0,42:-121.3:PASS:370,262,0 chr1 3669205 . C G 2211 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:289:289:84:18:40,44:21,25:19,19:-34.6:PASS:346,0,286 chr1 3677933 . T C 1697 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:8:0,37:0,12:0,25:-41:PASS:370,111,0 chr1 3679783 . T C 344 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:18:9:10,8:5,2:5,6:-9.4:PASS:121,0,145 chr1 3679886 . C T 245 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:147:31:7:13,18:7,9:6,9:-23.5:PASS:206,0,144 chr1 3679925 . T C 585 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:152:30:15:14,16:6,11:8,5:-14.6:PASS:187,0,159 chr1 3753136 . A T 485 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:117:29:15:11,18:10,13:1,5:-20.8:PASS:216,0,114 chr1 3755675 . T C 2693 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:8:0,63:0,19:0,44:-60.8:PASS:370,190,0 chr1 3761479 . C T 450 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:162:35:0:16,19:13,11:3,8:-23.6:PASS:210,0,159 chr1 3786189 . G A 501 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:107:15:1:6,9:4,7:2,2:-11.1:PASS:143,0,109 chr1 3800242 . A G 2677 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:10:0,71:0,34:0,37:-99.1:PASS:370,214,0 chr1 3807388 . G A 985 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:44:13:26,18:11,11:15,7:-12.1:PASS:160,0,248 chr1 3807593 . G C 1801 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:5:0,35:0,8:0,27:-31.5:PASS:370,105,0 chr1 4772717 . G A 1983 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:18:0,29:0,5:0,24:-23.8:PASS:370,87,0 chr1 5926507 . T C 397 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:69:69:17:6:7,10:7,7:0,3:-15.2:PASS:155,0,66 chr1 5937168 . G A 603 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:72:27:7:18,9:15,7:3,2:-10.3:PASS:106,0,202 chr1 5969245 . G A 457 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:36:4:20,16:12,10:8,6:-17.9:PASS:169,0,210 chr1 6046264 . G A 883 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:375:342:108:27:55,53:40,40:15,13:-26:PASS:370,0,370 chr1 6142329 . C T 487 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:40:40:28:5:1,27:1,12:0,15:-33.5:PASS:363,43,0 chr1 6184092 . A G 1340 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:6:0,32:0,12:0,20:-43:PASS:370,96,0 chr1 6196869 . A G 1265 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:4:0,22:0,6:0,16:-27.7:PASS:351,66,0 chr1 6209363 . T C 945 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:11:0,20:0,9:0,11:-34.8:PASS:320,60,0 chr1 6211183 . G A 1465 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:7:0,39:0,15:0,24:-49.9:PASS:370,117,0 chr1 6267531 . C T 105 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:83:60:7:1:3,4:2,3:1,1:-8:PASS:95,0,81 chr1 6269021 . C T 139 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:25:25:5:1:1,4:0,3:1,1:-8:PASS:106,0,22 chr1 6269340 . A G 319 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:46:45:8:4:2,6:0,0:2,6:0:PASS:89,0,43 chr1 6272078 . G A 52 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:16:6:12,4:5,1:7,3:-5.2:PASS:70,0,179 chr1 6278414 . A G 874 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:22:7:11,10:3,6:8,4:-12.4:PASS:140,0,160 chr1 6314822 . T C 1760 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:19:0,44:0,12:0,32:-42:PASS:370,132,0 chr1 6635231 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:5:0,74:0,17:0,57:-55.7:PASS:370,223,0 chr1 6659505 . G A 674 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:156:34:5:15,19:6,6:9,13:-17.1:PASS:206,0,153 chr1 6693097 . A G 1657 PASS SNVHPOL=4;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:7:0,20:0,8:0,12:-31.5:PASS:319,60,0 chr1 6704635 . A G 1309 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:7:0,23:0,15:0,8:-32.4:PASS:357,69,0 chr1 6705874 . G C 265 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:81:16:9:9,7:6,2:3,5:-8.3:PASS:115,0,150 chr1 7723957 . G A 1031 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:175:47:19:23,24:16,12:7,12:-22.4:PASS:210,0,206 chr1 7870048 . T C 1238 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:4:0,22:0,5:0,17:-22.7:PASS:339,66,0 chr1 7887493 . T C 2077 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:8:0,28:0,12:0,16:-43.8:PASS:370,84,0 chr1 7913430 . G A 1682 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:149:149:54:3:0,53:0,25:0,28:-77.6:PASS:370,160,0 chr1 8390888 . G A 395 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:120:22:10:10,12:4,5:6,7:-17.6:PASS:155,0,144 chr1 8418644 . C A 853 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:12:0,19:0,13:0,6:-27:PASS:309,57,0 chr1 8418650 . T C 1064 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:8:0,24:0,17:0,7:-29.9:PASS:369,72,0 chr1 9009406 . C T 802 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:8:0,12:0,6:0,6:-26.7:PASS:233,36,0 chr1 9009444 . A C 851 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:5:0,17:0,9:0,8:-32:PASS:284,51,0 chr1 9307138 . T C 326 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:77:11:4:3,8:1,5:2,3:-15.6:PASS:152,0,74 chr1 9323910 . G A 522 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:46:13:32,14:17,8:15,6:-11.3:PASS:111,0,318 chr1 9324571 . T C 2014 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:634:601:232:50:124,108:59,61:65,47:-57.5:PASS:370,0,370 chr1 9324670 . A G 1974 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:493:493:167:83:80,87:38,44:42,43:-66.3:PASS:370,0,370 chr1 9670834 . C T 657 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:21:21:8:3:0,8:0,5:0,3:-17.4:PASS:178,24,0 chr1 9784423 . C T 511 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:155:53:7:30,22:15,8:15,14:-16.1:PASS:189,0,284 chr1 9804693 . C T 221 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:15:9:9,6:2,2:7,4:-12.6:PASS:111,0,144 chr1 9811541 . A G 507 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:113:18:10:8,10:7,7:1,3:-16.6:PASS:161,0,110 chr1 10511544 . C T,G 1090 PASS SNVHPOL=3;MQ=60;AC=2,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:11:0,25,0:0,17,0:0,8,0:-32.4:PASS:370,75,0,370,75,370 chr1 10511589 . T C 1604 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:10:0,23:0,7:0,16:-26.3:PASS:339,69,0 chr1 10705110 . G A 281 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:111:17:5:8,9:3,5:5,4:-14.5:PASS:146,0,134 chr1 10708028 . G A 66 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:66:54:7:2:3,4:3,3:0,1:-6.6:PASS:89,0,63 chr1 10708142 . A G 379 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:104:73:10:1:5,5:1,1:4,4:-8:PASS:107,0,107 chr1 10709441 . C T 338 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:95:14:3:5,9:2,1:3,8:-7.3:PASS:139,0,92 chr1 10713765 . T C 1075 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:4:0,37:0,28:0,9:-33.3:PASS:370,111,0 chr1 11087524 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:298:298:100:9:0,100:0,53:0,47:-133.8:PASS:370,301,0 chr1 11090916 . C A 855 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:0:0,20:0,9:0,11:-34:PASS:318,60,0 chr1 11132217 . G A 1305 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:1:0,34:0,10:0,24:-37.4:PASS:370,102,0 chr1 11141187 . C G 1116 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:4:0,20:0,4:0,16:-20.6:PASS:318,60,0 chr1 11189856 . C T 378 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:144:30:3:12,18:6,8:6,10:-21.6:PASS:208,0,141 chr1 11205058 . C T 1075 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:4:0,27:0,7:0,20:-27.8:PASS:370,81,0 chr1 11288758 . G A 2257 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:11:0,76:0,56:0,20:-63.8:PASS:370,229,0 chr1 11301714 . A G 518 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:0:0,6:0,2:0,4:-15.3:PASS:163,18,0 chr1 11561593 . G A 809 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:6:0,18:0,3:0,15:-16.3:PASS:278,54,0 chr1 11579470 . G A 693 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:4:0,11:0,4:0,7:-21.4:PASS:220,33,0 chr1 11728894 . G A 455 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:145:33:7:17,16:9,5:8,11:-13.9:PASS:180,0,178 chr1 11728952 . C T 337 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:168:37:5:18,19:6,8:12,11:-22.7:PASS:203,0,186 chr1 11766571 . C G 277 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:11:3:6,5:4,4:2,1:-7.3:PASS:104,0,130 chr1 11827304 . A G 1066 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:8:0,14:0,8:0,6:-26.6:PASS:244,42,0 chr1 11831595 . G A 415 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:27:14:15,12:9,7:6,5:-16.9:PASS:153,0,181 chr1 11832289 . C A 206 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:57:10:3:6,4:3,2:3,2:-9.2:PASS:92,0,125 chr1 11839998 . T C 618 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:4:0,11:0,4:0,7:-20.7:PASS:211,33,0 chr1 11844454 . A C 151 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:11:7:7,4:1,1:6,3:-8:PASS:85,0,124 chr1 11849447 . A G,T 862 PASS SNVHPOL=3;MQ=60;AC=2,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:9:0,17,0:0,7,0:0,10,0:-27.3:PASS:280,51,0,280,51,280 chr1 11854457 . G A 2882 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:20:0,65:0,35:0,30:-89.1:PASS:370,196,0 chr1 11854476 . T G 580 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:60:21:35,25:19,15:16,10:-16.5:PASS:176,0,292 chr1 11884555 . A G 820 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:5:0,13:0,8:0,5:-23.8:PASS:238,39,0 chr1 11983206 . A G 297 PASS SNVHPOL=7;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:102:20:9:11,9:3,6:8,3:-10:PASS:136,0,158 chr1 12082334 . A T 275 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:83:9:5:4,5:1,2:3,3:-13.3:PASS:118,0,91 chr1 12164437 . C T 322 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:125:24:6:12,12:7,7:5,5:-17.6:PASS:160,0,159 chr1 12175729 . C T 1579 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:4:0,25:0,12:0,13:-43:PASS:370,75,0 chr1 12401868 . A C 739 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:135:28:10:14,14:7,7:7,7:-18.5:PASS:170,0,170 chr1 12460324 . C A 258 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:26:5:16,10:10,7:6,3:-13.2:PASS:131,0,196 chr1 12638964 . T C 988 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:0:0,16:0,8:0,8:-31.5:PASS:275,48,0 chr1 12776218 . A C 1684 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:6:0,37:0,25:0,12:-42.3:PASS:370,111,0 chr1 12776344 . A T 1403 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:12:0,28:0,7:0,21:-28.8:PASS:370,84,0 chr1 12779560 . T C 2328 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:12:0,44:0,28:0,16:-53.6:PASS:370,132,0 chr1 12779618 . T C 2332 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:8:0,55:0,26:0,29:-79.4:PASS:370,166,0 chr1 12785494 . G T 841 PASS SNVHPOL=9;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:238:85:19:46,39:24,17:22,22:-24.8:PASS:273,0,370 chr1 12785749 . C T 2027 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:76:10:41,35:18,16:23,19:-30.3:PASS:267,0,329 chr1 12820870 . T C 1129 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:3:0,22:0,6:0,16:-26.7:PASS:346,66,0 chr1 12835868 . T C 984 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:242:209:79:9:45,34:27,15:18,19:-21.2:PASS:244,0,367 chr1 12837634 . T A 607 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:200:46:13:21,25:12,14:9,11:-26:PASS:241,0,198 chr1 12854068 . T C 191 PASS SNVHPOL=5;MQ=48;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:61:72:7:52,20:47,18:5,2:-9.9:PASS:96,0,370 chr1 12854188 . T C 222 PASS SNVHPOL=2;MQ=50;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:81:14:55,26:31,21:24,5:-3.1:PASS:135,0,370 chr1 12854530 . C G 3070 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:277:277:93:11:0,93:0,37:0,56:-107.2:PASS:370,280,0 chr1 12855835 . C G 3070 PASS SNVHPOL=3;MQ=50;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:322:322:108:23:0,108:0,45:0,63:-123.9:PASS:370,325,0 chr1 12855845 . G C 3070 PASS SNVHPOL=2;MQ=50;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:346:346:116:10:0,116:0,42:0,74:-119.3:PASS:370,349,0 chr1 12887549 . T C 3070 PASS SNVHPOL=2;MQ=56;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:536:536:179:32:0,179:0,79:0,100:-215.6:PASS:370,370,0 chr1 12888389 . A C 652 PASS SNVHPOL=2;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:43:43:32:7:6,26:4,17:2,9:-27.2:PASS:293,0,40 chr1 12888601 . G GC 3070 PASS CIGAR=1M1I;RU=C;REFREP=3;IDREP=4;MQ=56;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:201:201:81:1,74:0,29:1,45:PASS:999,204,0 chr1 12888629 . A G 307 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:70:37:61:21:46,15:4,8:42,7:6.3:PASS:71,0,370 chr1 12907282 . G C 234 PASS SNVHPOL=3;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:72:39:73:7:56,17:45,12:11,5:-3.6:PASS:74,0,370:. chr1 12907284 . T C 202 PASS SNVHPOL=4;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:86:53:72:9:54,18:46,12:8,6:-2.7:PASS:88,0,370:. chr1 12907285 . G C 176 PASS SNVHPOL=2;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:65:32:74:9:57,17:46,12:11,5:-1.8:PASS:67,0,370:. chr1 12907316 . T C 161 PASS SNVHPOL=4;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:47:68:15:51,17:37,9:14,8:-1.7:PASS:81,0,370 chr1 12907777 . T C 384 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:117:15:79,38:38,33:41,5:8.3:PASS:178,0,370 chr1 12907798 . A C 1072 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:315:282:121:23:70,51:35,44:35,7:0.5:PASS:317,0,370 chr1 12907802 . C T 1089 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:326:293:133:17:78,55:37,47:41,8:2.6:PASS:328,0,370:12907802 chr1 12907803 . C T 1137 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:332:299:133:19:77,56:39,46:38,10:-3.3:PASS:334,0,370:12907802 chr1 12907837 . C T 1713 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:454:421:144:27:75,69:36,56:39,13:-9.1:PASS:370,0,370 chr1 12907885 . T C 2059 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:495:462:190:12:104,85:73,40:31,45:-37.7:PASS:370,0,370 chr1 12942119 . C T 3070 PASS SNVHPOL=3;MQ=51;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:375:375:179:36:12,167:12,77:0,90:-169.4:PASS:370,370,0 chr1 12979729 . G A 581 PASS SNVHPOL=2;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:47:7:28,19:19,11:9,8:-18.2:PASS:160,0,266 chr1 12979845 . T C 806 PASS SNVHPOL=2;MQ=36;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:196:52:18:24,28:15,11:9,17:-20.7:PASS:252,0,193 chr1 13000963 . G A 362 PASS SNVHPOL=3;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:37:1:21,16:21,16:0,0:0:PASS:117,0,171 chr1 13001186 . C T 3045 PASS SNVHPOL=3;MQ=41;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:235:148:25:52,96:43,77:9,19:-33.8:PASS:370,0,232 chr1 13001312 . C G 3070 PASS SNVHPOL=2;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:150:298:18:82,216:24,62:58,154:-116:PASS:370,0,147 chr1 13036247 . T A 230 PASS SNVHPOL=3;MQ=21;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:4:0,6:0,5:0,1:-6.4:PASS:132,18,0 chr1 13036330 . G A 243 PASS SNVHPOL=2;MQ=19;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:4:0,7:0,6:0,1:-8.2:PASS:148,21,0 chr1 13036447 . C G 1379 PASS SNVHPOL=2;MQ=23;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:1:0,30:0,26:0,4:-20.6:PASS:370,90,0 chr1 13036587 . C T 1902 PASS SNVHPOL=2;MQ=34;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:10:0,53:0,21:0,32:-64.5:PASS:370,159,0 chr1 13036654 . C T 95 PASS SNVHPOL=2;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:43:41:3:30,11:11,1:19,10:-0.6:PASS:78,0,295 chr1 13183237 . C T 905 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:213:180:164:27:111,53:51,42:60,11:9.2:PASS:215,0,370:. chr1 13183248 . T A 1085 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:226:193:160:32:107,53:51,44:56,9:9.9:PASS:228,0,370:. chr1 13183249 . C A 1035 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:241:208:167:27:111,56:52,45:59,11:8.2:PASS:243,0,370:. chr1 13183439 . T C 3070 PASS SNVHPOL=4;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:215:40:39,176:17,98:22,78:-145.3:PASS:370,117,0 chr1 13183511 . T C 2226 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:507:474:186:39:98,88:45,22:53,66:-19.6:PASS:370,0,370 chr1 13183528 . A C 1829 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:417:384:172:34:97,75:53,17:44,58:-4:PASS:370,0,370 chr1 13183532 . C T 1604 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:404:371:169:32:96,73:55,16:41,57:-0.8:PASS:370,0,370:13183532 chr1 13183533 . C T 1724 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:414:381:162:36:89,73:51,19:38,54:-8.1:PASS:370,0,370:13183532 chr1 13183567 . C T 1508 PASS SNVHPOL=2;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:358:325:144:24:82,62:45,8:37,54:6.3:PASS:360,0,370 chr1 13183573 . G T 1191 PASS SNVHPOL=2;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:263:230:124:29:76,48:42,5:34,43:8.8:PASS:265,0,370 chr1 13366053 . G A 626 PASS SNVHPOL=3;MQ=16;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:1:0,14:0,0:0,14:0:PASS:200,42,0 chr1 13368445 . C T 23 PASS SNVHPOL=4;MQ=6;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:45:16:4:1:2,2:2,0:0,2:1.4:PASS:51,0,46 chr1 13368549 . C T 136 PASS SNVHPOL=6;MQ=9;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:67:34:10:1:7,3:7,2:0,1:-7.5:PASS:69,0,92 chr1 13414059 . C T 779 PASS SNVHPOL=2;MQ=32;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:64:9:36,28:20,22:16,6:-11.9:PASS:223,0,307 chr1 13448180 . A G 338 PASS SNVHPOL=4;MQ=18;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:51:51:11:2:3,8:0,8:3,0:2.1:PASS:106,0,48 chr1 13448184 . C T 384 PASS SNVHPOL=5;MQ=19;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:43:43:12:2:3,9:0,9:3,0:2.1:PASS:114,0,40 chr1 13448185 . G C 296 PASS SNVHPOL=3;MQ=20;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:43:13:3:7,6:5,6:2,0:1.4:PASS:78,0,109 chr1 13448199 . C T 687 PASS SNVHPOL=2;MQ=21;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:19:19:21:1:3,18:0,18:3,0:2.1:PASS:189,0,16 chr1 13448283 . A G 2973 PASS SNVHPOL=2;MQ=28;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:6:0,67:0,59:0,8:-32.6:PASS:370,202,0 chr1 13448351 . T C 2156 PASS SNVHPOL=4;MQ=22;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:8:0,53:0,41:0,12:-39.6:PASS:370,159,0 chr1 13448547 . T C 1032 PASS SNVHPOL=2;MQ=14;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:2:0,21:0,0:0,21:0:PASS:281,63,0 chr1 13448548 . G A 1049 PASS SNVHPOL=3;MQ=14;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:2:0,20:0,0:0,20:0:PASS:271,60,0 chr1 13448551 . T C 1052 PASS SNVHPOL=2;MQ=14;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:2:0,20:0,0:0,20:0:PASS:264,60,0 chr1 13695685 . G A 847 PASS SNVHPOL=4;MQ=17;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:0:0,18:0,18:0,0:0:PASS:248,54,0 chr1 13695787 . C G 1729 PASS SNVHPOL=2;MQ=26;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:5:0,42:0,33:0,9:-33.5:PASS:370,126,0 chr1 13695816 . G A 1936 PASS SNVHPOL=4;MQ=30;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:13:0,49:0,35:0,14:-44.9:PASS:370,147,0 chr1 13695974 . T C 1391 PASS SNVHPOL=2;MQ=28;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:5:0,29:0,7:0,22:-27.8:PASS:370,87,0 chr1 13696022 . A G 479 PASS SNVHPOL=4;MQ=15;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:1:0,9:0,0:0,9:0:PASS:144,27,0 chr1 13696029 . A G 477 PASS SNVHPOL=2;MQ=14;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:0:0,9:0,0:0,9:0:PASS:142,27,0 chr1 13696047 . A T 442 PASS SNVHPOL=2;MQ=15;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:1:0,9:0,0:0,9:0:PASS:144,27,0 chr1 13696054 . G A 461 PASS SNVHPOL=3;MQ=15;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:3:0,7:0,0:0,7:0:PASS:125,21,0 chr1 13696090 . T C 464 PASS SNVHPOL=2;MQ=16;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:1:0,7:0,0:0,7:0:PASS:120,21,0 chr1 13802325 . T C 344 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:26:9:14,12:10,9:4,3:-14.6:PASS:155,0,185 chr1 13940864 . C G 2739 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:165:165:56:8:0,56:0,25:0,31:-76.5:PASS:370,169,0 chr1 14106394 . A ACTC 2031 PASS CIGAR=1M3I;RU=CTC;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:555:555:87:40,44:15,18:25,26:PASS:763,0,552 chr1 14143003 . A G 926 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:4:0,20:0,5:0,15:-23.8:PASS:323,60,0 chr1 15495110 . A G 1255 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:217:53:13:24,29:16,18:8,11:-27.5:PASS:272,0,215 chr1 15497727 . T C 379 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:1:0,6:0,3:0,3:-16:PASS:152,18,0 chr1 15546077 . G A 499 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:192:45:9:22,23:5,8:17,15:-23.6:PASS:227,0,206 chr1 15653563 . C T 165 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:79:46:8:1:5,3:4,2:1,1:-8:PASS:81,0,109 chr1 15668276 . G A 813 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:35:6:22,13:17,7:5,6:-13.7:PASS:138,0,244 chr1 15687059 . A G 952 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:55:7:31,24:17,14:14,10:-19.1:PASS:200,0,281 chr1 15701116 . C T 290 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:64:29:6:19,10:12,1:7,9:-0.4:PASS:99,0,212 chr1 15708540 . A G 644 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:23:5:13,10:10,8:3,2:-10.6:PASS:131,0,170 chr1 15723843 . G A 601 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:196:48:9:24,24:17,16:7,8:-22.4:PASS:231,0,221 chr1 15789297 . A C 1696 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:8:0,33:0,14:0,19:-46.9:PASS:370,99,0 chr1 15793913 . G A 635 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:41:5:22,19:16,11:6,8:-20.5:PASS:182,0,223 chr1 15812432 . A G 944 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:2:0,16:0,11:0,5:-23.5:PASS:276,48,0 chr1 15832543 . T C 547 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:70:70:12:0:3,9:1,2:2,7:-11.9:PASS:154,0,67 chr1 15844615 . A G 1072 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:62:13:38,24:20,18:18,6:-9.8:PASS:184,0,330 chr1 15850603 . G A 164 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:52:19:10:2:7,3:2,0:5,3:1.4:PASS:54,0,128 chr1 15850613 . G A 178 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:58:25:8:4:5,3:1,0:4,3:0.7:PASS:60,0,111 chr1 15892415 . A C 1020 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:170:38:9:17,21:13,13:4,8:-23.4:PASS:220,0,167 chr1 15904318 . C T 783 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:144:29:5:12,17:5,5:7,12:-16:PASS:200,0,141 chr1 15905501 . G A 308 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:11:6:6,5:2,2:4,3:-12:PASS:108,0,130 chr1 15909744 . C T 777 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:149:33:2:13,20:10,13:3,7:-23.2:PASS:228,0,146 chr1 15909850 . C G 678 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:135:25:2:10,15:5,3:5,12:-12:PASS:186,0,132 chr1 15959977 . C T 575 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:79:46:25:4:19,6:14,4:5,2:-8:PASS:80,0,234 chr1 15986547 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:578:546:179:33:90,89:16,11:74,78:-21.1:PASS:370,0,370 chr1 16044401 . G A 411 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:64:23:0:15,8:7,7:8,1:-3.2:PASS:99,0,202 chr1 16056364 . G A 523 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:96:96:15:4:5,10:3,5:2,5:-19:PASS:168,0,93 chr1 16069644 . C T 358 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:83:11:5:5,6:1,3:4,3:-13.1:PASS:118,0,94 chr1 16256007 . T C 1315 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:341:323:95:17:47,48:26,27:21,21:-37.1:PASS:358,0,338 chr1 16259813 . A G 1356 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:61:21:36,25:16,11:20,14:-18.7:PASS:184,0,320 chr1 16342237 . A G 2862 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:27:0,71:0,24:0,47:-74.2:PASS:370,214,0 chr1 16344360 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:479:479:160:46:0,160:0,60:0,100:-169.1:PASS:370,370,0 chr1 16344402 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:370:370:124:47:0,124:0,32:0,92:-93.7:PASS:370,370,0 chr1 16351275 . A G 1069 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:6:0,27:0,16:0,11:-38.1:PASS:370,81,0 chr1 16357035 . G A 854 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:264:231:112:24:67,45:27,22:40,23:-26.9:PASS:265,0,370 chr1 16371067 . G T 620 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:72:20:51,21:32,17:19,4:-4.8:PASS:108,0,370 chr1 16373124 . A G 518 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:72:21:7:14,7:5,2:9,5:-10.5:PASS:107,0,195 chr1 16374533 . G C 609 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:150:38:9:20,18:6,6:14,12:-17.9:PASS:185,0,208 chr1 16375063 . C G 621 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:159:159:37:11:16,21:5,4:11,17:-15.8:PASS:228,0,156:16375063 chr1 16375064 . A C 689 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:128:128:36:12:14,22:3,4:11,18:-17.2:PASS:243,0,125:16375063 chr1 16375510 . G A 340 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:140:23:12:10,13:7,6:3,7:-17.9:PASS:178,0,140 chr1 16375706 . G A 360 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:118:25:10:13,11:6,4:7,7:-15.3:PASS:152,0,168 chr1 16376191 . C T 515 PASS SNVHPOL=4;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:175:38:24:18,20:10,14:8,6:-16.1:PASS:210,0,185 chr1 16376319 . T C 802 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:173:37:16:17,20:5,6:12,14:-19.6:PASS:216,0,171 chr1 16380196 . T C 1588 PASS SNVHPOL=2;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:6:0,31:0,15:0,16:-50.2:PASS:370,93,0 chr1 16380243 . A G 1612 PASS SNVHPOL=3;MQ=56;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:4:0,30:0,9:0,21:-35:PASS:370,90,0 chr1 16380252 . C T 1364 PASS SNVHPOL=4;MQ=55;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:6:0,25:0,7:0,18:-28.9:PASS:370,75,0 chr1 16385175 . G A 182 PASS SNVHPOL=4;MQ=48;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:17:4:1:2,2:1,0:1,2:0.7:PASS:52,0,70 chr1 16388602 . G A 103 PASS SNVHPOL=3;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:51:18:15:1:12,3:9,2:3,1:-6:PASS:53,0,179 chr1 16451722 . C T 923 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:313:289:83:31:41,42:14,17:27,25:-33.8:PASS:324,0,310 chr1 16464673 . G A 1763 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:273:240:93:34:52,41:32,26:20,15:-25.3:PASS:275,0,370 chr1 16475123 . C T 1211 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:309:307:88:19:42,46:11,13:31,33:-28.4:PASS:347,0,306 chr1 16475126 . C T 930 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:258:225:81:28:45,36:13,15:32,21:-29.5:PASS:260,0,366 chr1 16532498 . G A 325 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:19:4:10,9:7,7:3,2:-10.4:PASS:134,0,149 chr1 16577908 . G C 606 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:188:49:10:25,24:12,11:13,13:-24.5:PASS:222,0,229 chr1 16641899 . C T 998 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:182:41:6:19,22:2,4:17,18:-16.4:PASS:221,0,181 chr1 16727305 . G GCTT 1385 PASS CIGAR=1M3I;RU=CTT;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:538:495:90:52,35:25,21:27,14:PASS:535,0,778 chr1 16730308 . G T 500 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:93:23:5:13,10:10,5:3,5:-12.4:PASS:128,0,175 chr1 16736327 . G A 2084 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:507:507:169:52:81,88:43,38:38,50:-55:PASS:370,0,370 chr1 16748432 . C T 293 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:71:38:8:2:5,3:2,2:3,1:-5.7:PASS:73,0,118 chr1 16890598 . T A 3070 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:382:382:259:31:92,166:40,51:52,115:-80.7:PASS:370,0,370 chr1 16890644 . C T 2717 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:552:552:204:27:95,109:34,34:61,75:-53.2:PASS:370,0,370 chr1 16890671 . T C 3070 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:265:265:199:17:68,131:16,25:52,106:-45.4:PASS:370,0,262:16890671 chr1 16890672 . G A 3070 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:295:295:198:17:70,128:16,20:54,108:-36.9:PASS:370,0,292:16890671 chr1 16892274 . A T 270 PASS SNVHPOL=2;MQ=41;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:34:34:12:0:2,10:0,9:2,1:-7.3:PASS:144,0,31 chr1 16892279 . C A 247 PASS SNVHPOL=2;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:34:34:12:2:2,10:0,8:2,2:-9.5:PASS:143,0,31 chr1 16895634 . T G 3070 PASS SNVHPOL=2;MQ=48;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:108:8:4,104:3,41:1,63:-98.1:PASS:370,211,0 chr1 16901668 . T C 929 PASS SNVHPOL=3;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:155:68:6:42,26:22,12:20,14:-18.9:PASS:190,0,362 chr1 16901710 . C G 81 PASS SNVHPOL=2;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:67:62:5:45,17:15,6:30,11:-11.2:PASS:102,0,370 chr1 16901714 . G A 1514 PASS SNVHPOL=3;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:192:64:2:25,39:8,11:17,28:-25.6:PASS:340,0,189 chr1 16902884 . T C 378 PASS SNVHPOL=2;MQ=24;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:216:121:25:75,46:56,44:19,2:-0.8:PASS:251,0,370 chr1 16902894 . A G 3070 PASS SNVHPOL=3;MQ=25;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:378:378:140:14:1,139:1,117:0,22:-69:PASS:370,370,0 chr1 16902943 . T C 538 PASS SNVHPOL=3;MQ=26;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:161:17:113,48:108,38:5,10:-10.6:PASS:165,0,370 chr1 16903912 . T A 3070 PASS SNVHPOL=4;MQ=42;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:319:319:107:26:0,107:0,10:0,97:-36.8:PASS:370,322,0 chr1 16905842 . A G 1480 PASS SNVHPOL=4;MQ=30;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:173:83:22:29,54:24,50:5,4:-13.4:PASS:370,0,170 chr1 16907328 . G T 3070 PASS SNVHPOL=4;MQ=38;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:577:577:243:22:107,136:42,46:65,90:-72.7:PASS:370,0,370 chr1 16909052 . C T 3070 PASS SNVHPOL=4;MQ=40;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:616:616:245:80:6,239:6,83:0,156:-182.9:PASS:370,370,0 chr1 16909100 . G C 809 PASS SNVHPOL=2;MQ=33;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:171:21:114,57:7,0:107,57:4.9:PASS:182,0,370 chr1 16909129 . T C 2189 PASS SNVHPOL=2;MQ=32;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:408:375:153:44:80,73:6,0:74,73:4.2:PASS:370,0,370 chr1 16909220 . T C 881 PASS SNVHPOL=3;MQ=28;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:338:305:122:20:65,57:7,0:58,57:4.9:PASS:340,0,370 chr1 16912014 . A C 925 PASS SNVHPOL=3;MQ=29;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:118:13:83,35:53,26:30,9:-7.6:PASS:138,0,370 chr1 16913584 . A C 823 PASS SNVHPOL=4;MQ=36;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:202:49:1:23,26:19,5:4,21:-6.1:PASS:238,0,206 chr1 16913612 . G A 598 PASS SNVHPOL=3;MQ=36;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:43:3:27,16:22,2:5,14:1.3:PASS:142,0,282 chr1 16913677 . T C 284 PASS SNVHPOL=2;MQ=39;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:76:46:3:31,15:25,1:6,14:8.9:PASS:111,0,304 chr1 16915357 . C T 341 PASS SNVHPOL=4;MQ=31;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:96:31:65,31:27,9:38,22:-4.7:PASS:138,0,370 chr1 16915513 . C G 902 PASS SNVHPOL=3;MQ=17;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:45:45:42:7:11,31:0,0:11,31:0:PASS:273,0,42 chr1 16918502 . A G 3070 PASS SNVHPOL=3;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:539:539:304:38:119,184:48,81:71,103:-129.8:PASS:370,0,370 chr1 17083807 . T C 1266 PASS SNVHPOL=3;MQ=41;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:54:48:12:11,37:7,7:4,30:-19.6:PASS:366,0,51 chr1 17085006 . C T 116 PASS SNVHPOL=5;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:55:22:76:20:59,17:19,3:40,14:-3.8:PASS:57,0,370 chr1 17085412 . C T 274 PASS SNVHPOL=4;MQ=48;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:84:84:16:57,27:31,20:26,7:-2.6:PASS:119,0,370 chr1 17085427 . T C 511 PASS SNVHPOL=4;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:92:21:61,31:36,23:25,8:-6.4:PASS:142,0,370 chr1 17085502 . T C 2172 PASS SNVHPOL=2;MQ=47;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:73:73:95:21:24,71:15,40:9,31:-63.7:PASS:370,0,70 chr1 17085564 . A G 444 PASS SNVHPOL=2;MQ=45;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:60:37:45,15:19,7:26,8:-8.4:PASS:86,0,370 chr1 17085834 . G T 3070 PASS SNVHPOL=3;MQ=46;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:286:286:96:49:0,96:0,28:0,68:-82.6:PASS:370,289,0 chr1 17086052 . T C 1392 PASS SNVHPOL=5;MQ=33;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:18:0,31:0,4:0,27:-21.9:PASS:370,93,0 chr1 17086085 . G GC 2512 PASS CIGAR=1M1I;RU=C;REFREP=2;IDREP=3;MQ=31;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:73:73:37:1,31:1,5:0,26:PASS:680,76,0 chr1 17086450 . C G 86 PASS SNVHPOL=3;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:73:40:18:2:14,4:3,2:11,2:-5.7:PASS:75,0,190 chr1 17086870 . T C 2034 PASS SNVHPOL=2;MQ=37;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:17:0,38:0,35:0,3:-17.3:PASS:370,114,0 chr1 17086941 . C T 167 PASS SNVHPOL=3;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:48:15:103:17:77,26:67,25:10,1:1.2:PASS:50,0,370 chr1 17087262 . C T 743 PASS SNVHPOL=2;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:307:161:221,86:67,35:154,51:-1.2:PASS:143,0,370 chr1 17087299 . T C 1044 PASS SNVHPOL=2;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:328:124:232,96:64,45:168,51:9.9:PASS:183,0,370 chr1 17087365 . C G 3070 PASS SNVHPOL=3;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:940:940:329:73:160,169:63,71:97,98:-103.6:PASS:370,0,370 chr1 17087541 . GGTGCT G 1175 PASS CIGAR=1M5D;RU=GTGCT;REFREP=1;IDREP=0;MQ=51;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:276:233:223:175,39:47,11:128,28:PASS:273,0,999 chr1 17087582 . G A 695 PASS SNVHPOL=2;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:166:25:111,55:28,9:83,46:-7.6:PASS:213,0,370 chr1 17250836 . A G 375 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:20:20:8:4:1,7:1,4:0,3:-17.3:PASS:154,0,17 chr1 17257840 . C G 192 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:48:20:6:15,5:9,2:6,3:-7.7:PASS:83,0,197 chr1 17271989 . G A 137 PASS SNVHPOL=3;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:27:22:3:17,5:8,1:9,4:-3.2:PASS:62,0,218 chr1 17282573 . G A 189 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:69:69:8:0:3,5:2,3:1,2:-10.8:PASS:116,0,66 chr1 17295679 . T C 638 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:3:0,12:0,8:0,4:-22.3:PASS:229,36,0 chr1 17314702 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:446:413:165:31:90,74:59,57:31,17:-21.8:PASS:370,0,370 chr1 17380497 . G T 1958 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:21:0,35:0,26:0,9:-34.8:PASS:370,105,0 chr1 17402255 . C T 445 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:27:3:16,11:10,7:6,4:-11.8:PASS:126,0,190 chr1 17413121 . A C 934 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:34:34:26:1:1,25:0,5:1,20:-24.5:PASS:341,37,0 chr1 17557133 . A C 746 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:168:39:5:19,20:13,8:6,12:-18.3:PASS:203,0,191 chr1 17609448 . G T 1250 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:213:209:53:13:25,28:13,7:12,21:-14.9:PASS:247,0,210 chr1 17657534 . G A 1487 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:290:281:76:19:37,39:11,10:26,29:-23.2:PASS:316,0,287 chr1 17657616 . T C 1216 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:186:58:15:23,35:5,8:18,27:-22.7:PASS:322,0,183 chr1 17660499 . G C 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:655:622:215:32:107,108:51,50:56,58:-69.6:PASS:370,0,370 chr1 17662662 . T C 2768 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:336:303:138:18:80,58:42,29:38,29:-37.5:PASS:337,0,370 chr1 17674537 . C A 940 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:42:10:24,18:12,11:12,7:-15.6:PASS:166,0,242 chr1 17701980 . A C 295 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:99:12:7:5,7:2,2:3,5:-12.6:PASS:134,0,115 chr1 17718671 . AG A 1243 PASS CIGAR=1M1D;RU=G;REFREP=3;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:57:57:22:0,20:0,9:0,11:PASS:441,60,0 chr1 17739586 . G A 253 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:99:99:14:1:6,8:5,4:1,4:-15.8:PASS:150,0,96 chr1 17991052 . T C 973 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:3:0,15:0,7:0,8:-28.2:PASS:258,45,0 chr1 18023365 . C T 479 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:2:0,9:0,8:0,1:-9.4:PASS:176,27,0 chr1 18023509 . T C 696 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:2:0,16:0,10:0,6:-24.5:PASS:271,48,0 chr1 18023690 . A G 593 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:21:21:8:5:0,8:0,2:0,6:-14.8:PASS:174,24,0 chr1 18152582 . C T 997 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:11:0,30:0,16:0,14:-47.2:PASS:370,90,0 chr1 18703328 . C T 150 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:67:34:14:0:8,6:7,6:1,0:0.7:PASS:68,0,127 chr1 19018405 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:498:498:180:78:1,179:0,69:1,110:-192.8:PASS:370,370,0 chr1 19018432 . A C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:519:519:187:44:1,186:0,52:1,134:-142.3:PASS:370,370,0 chr1 19166294 . G A 447 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:35:12:23,12:17,10:6,2:-9.2:PASS:125,0,248 chr1 19201928 . C T 1647 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:307:307:146:34:57,89:29,52:28,37:-63.2:PASS:370,0,304 chr1 19201956 . A G 2883 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:386:353:141:39:78,63:39,35:39,28:-38.1:PASS:370,0,370 chr1 19202896 . G A 1654 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:238:115:43:68,47:35,14:33,33:-10.8:PASS:273,0,370 chr1 19202917 . T C 2629 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:282:105:41:45,59:23,22:22,37:-35.7:PASS:370,0,279 chr1 19202926 . T C 2487 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:265:95:42:41,54:23,19:18,35:-30.6:PASS:370,0,262 chr1 19203997 . C G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:283:283:95:33:0,95:0,35:0,60:-103.8:PASS:370,286,0 chr1 19411129 . A G 1063 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:4:0,22:0,10:0,12:-36.3:PASS:338,66,0 chr1 19413261 . T A 675 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:31:31:20:5:1,19:0,8:1,11:-32.1:PASS:283,34,0 chr1 19415304 . C T 875 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:12:0,19:0,14:0,5:-22.1:PASS:300,57,0 chr1 19433449 . A G 980 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:3:0,22:0,13:0,9:-33.5:PASS:332,66,0 chr1 19447843 . C G 760 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:3:0,12:0,8:0,4:-22.3:PASS:235,36,0 chr1 19499560 . T C 619 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:97:37:9:24,13:9,8:15,5:-10.7:PASS:132,0,253 chr1 19565344 . C G 319 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:32:2:21,11:7,2:14,9:-8.1:PASS:114,0,244 chr1 19566858 . G A 566 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:160:37:7:17,19:9,9:8,10:-22.3:PASS:195,0,168 chr1 19566881 . C T 399 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:35:8:24,11:11,4:13,7:-11.6:PASS:115,0,255 chr1 19584004 . G A 403 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:67:14:3:9,5:4,3:5,2:-10.5:PASS:102,0,162 chr1 19609254 . T C 2280 PASS SNVHPOL=3;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:7:0,45:0,31:0,14:-48:PASS:370,135,0 chr1 19611241 . T C 1959 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:7:0,40:0,18:0,22:-57.9:PASS:370,120,0 chr1 19612477 . C T 323 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:28:8:17,11:8,7:9,4:-13.3:PASS:135,0,203 chr1 19635011 . C T 462 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:30:13:17,13:5,7:12,6:-14.7:PASS:159,0,185 chr1 19652063 . G A 117 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:52:19:8:5:5,3:3,0:2,3:2.1:PASS:54,0,125 chr1 19652874 . G A 191 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:53:31:4:2:2,2:1,1:1,1:-7.1:PASS:66,0,50 chr1 20020993 . A G 569 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:1:0,11:0,6:0,5:-24.3:PASS:222,33,0 chr1 20442054 . T C 1438 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:4:0,23:0,17:0,6:-27.2:PASS:356,69,0 chr1 20490518 . T C 359 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:62:58:6:4:2,4:1,3:1,1:-8:PASS:95,0,59 chr1 20915701 . A C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:316:316:106:34:0,106:0,45:0,61:-129.7:PASS:370,319,0 chr1 20980799 . G A 492 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:81:37:6:24,12:6,4:18,8:-12.7:PASS:116,0,254 chr1 20982631 . G A 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:424:424:142:91:0,142:0,68:0,74:-183:PASS:370,370,0 chr1 20987873 . G C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:325:325:109:26:0,109:0,25:0,84:-75.8:PASS:370,328,0 chr1 20991200 . G GCC 655 PASS CIGAR=1M2I;RU=C;REFREP=0;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:234:191:227:114,23:100,0:14,23:PASS:231,0,999 chr1 20992819 . G C 827 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:2:0,20:0,5:0,15:-23.6:PASS:321,60,0 chr1 21012563 . C T 394 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:110:37:22:22,15:10,6:12,9:-15.6:PASS:145,0,232 chr1 21024901 . C T 1230 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:244:122:37:72,49:36,21:36,28:-24:PASS:279,0,370 chr1 21031046 . C T 839 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:371:343:104:40:51,53:24,31:27,22:-34.8:PASS:370,0,370 chr1 21042094 . G A 782 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:45:13:29,16:8,5:21,11:-14.6:PASS:140,0,287 chr1 21044161 . A G 636 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:29:8:15,14:1,1:14,13:-8:PASS:151,0,155 chr1 21167404 . A G 2001 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:12:0,40:0,28:0,12:-41.8:PASS:370,120,0 chr1 21268710 . C T 977 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:248:93:18:38,55:15,13:23,42:-24.9:PASS:370,0,245 chr1 21795388 . A G 1381 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:326:302:89:10:44,45:14,10:30,35:-20.1:PASS:336,0,324 chr1 21808159 . G A 214 PASS SNVHPOL=2;MQ=45;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:89:57:8:0:4,4:2,1:2,3:-5.2:PASS:92,0,102 chr1 21808207 . A C 117 PASS SNVHPOL=3;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:70:37:7:0:4,3:2,1:2,2:-6.4:PASS:72,0,105 chr1 21808223 . T C 72 PASS SNVHPOL=2;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:32:5:0:3,2:1,1:2,1:-7.3:PASS:66,0,88 chr1 21889635 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:332:332:125:27:1,124:0,61:1,63:-166.4:PASS:370,335,0 chr1 21940555 . C T 332 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:102:12:3:5,7:2,4:3,3:-13.9:PASS:139,0,103 chr1 21943820 . G A 195 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:85:14:7:7,7:4,3:3,4:-12.3:PASS:119,0,125 chr1 22141206 . A C 398 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:83:83:9:6:3,6:1,4:2,2:-12:PASS:133,0,80 chr1 22149935 . T C 2633 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:16:0,70:0,51:0,19:-60.6:PASS:370,211,0 chr1 22191454 . G A 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:47:0,85:0,20:0,65:-60.8:PASS:370,256,0 chr1 22199245 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:400:400:134:30:0,134:0,82:0,52:-146.4:PASS:370,370,0 chr1 22206649 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:457:457:153:32:0,153:0,109:0,44:-123.3:PASS:370,370,0 chr1 22206942 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:545:545:182:76:0,182:0,82:0,100:-224.9:PASS:370,370,0 chr1 22207235 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:381:381:141:35:1,140:0,53:1,87:-150.4:PASS:370,370,0 chr1 22216574 . C A 2970 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:256:256:86:36:0,86:0,14:0,72:-46.3:PASS:370,259,0 chr1 22216604 . C G 2669 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:35:0,75:0,19:0,56:-61.1:PASS:370,226,0 chr1 22217108 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:22:0,76:0,7:0,69:-28.7:PASS:370,229,0 chr1 22307340 . C T 548 PASS SNVHPOL=4;MQ=56;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:8:0,17:0,17:0,0:0:PASS:227,51,0 chr1 22307358 . C G 655 PASS SNVHPOL=2;MQ=56;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:7:0,18:0,15:0,3:-16.5:PASS:275,54,0 chr1 22310262 . G C 1168 PASS SNVHPOL=3;MQ=53;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:4:0,19:0,12:0,7:-27.5:PASS:303,57,0 chr1 22310725 . G C 1258 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:12:0,23:0,13:0,10:-36.9:PASS:355,69,0 chr1 22310824 . T C 1346 PASS SNVHPOL=3;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:8:0,25:0,12:0,13:-43.2:PASS:370,75,0 chr1 22313161 . T C 910 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:1:0,22:0,8:0,14:-32.2:PASS:347,66,0 chr1 22332008 . T C 238 PASS SNVHPOL=2;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:102:69:29:17:20,9:16,3:4,6:-4.5:PASS:104,0,226 chr1 22336277 . C G 1201 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:8:0,17:0,9:0,8:-31.9:PASS:283,51,0 chr1 22835677 . A G 1894 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:6:0,36:0,10:0,26:-37.6:PASS:370,108,0 chr1 22846709 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:22:0,83:0,12:0,71:-40.6:PASS:370,250,0 chr1 23219493 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:442:442:148:28:0,148:0,56:0,92:-158.9:PASS:370,370,0 chr1 23280424 . G T 78 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:35:31:3:1:1,2:1,1:0,1:-7.8:PASS:69,0,32 chr1 23280491 . G T 108 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:26:26:6:1:1,5:0,1:1,4:-8.7:PASS:114,0,23 chr1 23418153 . C T 783 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:152:34:11:17,17:10,7:7,10:-17.9:PASS:187,0,179 chr1 23419261 . G A 872 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:61:17:35,26:21,10:14,16:-16.3:PASS:204,0,289 chr1 23419283 . G A 619 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:63:26:35,28:12,16:23,12:-18.2:PASS:216,0,298 chr1 23419374 . G T 733 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:70:15:44,26:13,14:31,12:-12.4:PASS:178,0,370 chr1 23419383 . C T 694 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:74:10:48,26:16,18:32,8:-4.7:PASS:171,0,370 chr1 23419855 . T C 2344 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:355:322:128:19:71,57:35,32:36,25:-33.2:PASS:356,0,370 chr1 23688933 . A G 1951 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:149:149:52:30:0,51:0,23:0,28:-71.1:PASS:370,153,0 chr1 23847464 . C A 616 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:3:0,21:0,14:0,7:-30.1:PASS:335,63,0 chr1 23885498 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:660:660:231:33:1,230:1,108:0,122:-288.1:PASS:370,370,0 chr1 24134721 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:606:606:214:47:103,111:62,49:41,62:-60.1:PASS:370,0,370 chr1 24180962 . T C 721 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:136:45:8:15,30:7,17:8,13:-30.8:PASS:294,0,133 chr1 24194748 . G C 878 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:49:9:26,23:7,3:19,20:-11:PASS:212,0,247 chr1 24194773 . G A 462 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:44:8:23,21:7,3:16,18:-8.5:PASS:173,0,222 chr1 24201162 . G A 1555 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:555:522:185:34:95,90:59,69:36,21:-24.7:PASS:370,0,370 chr1 24406647 . G A 339 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:75:16:3:9,7:1,1:8,6:-8:PASS:110,0,127 chr1 24409191 . C T 564 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:27:2:16,11:7,7:9,4:-11.9:PASS:139,0,204 chr1 24413159 . T C 446 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:108:20:12:8,12:7,11:1,1:-8:PASS:155,0,106 chr1 24416059 . T C 875 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:3:0,10:0,5:0,5:-23.8:PASS:208,30,0 chr1 24416070 . G C 427 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:75:11:2:5,6:2,1:3,5:-7.3:PASS:110,0,106 chr1 24417415 . T C 639 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:125:26:10:13,13:8,4:5,9:-11.3:PASS:160,0,160 chr1 24418768 . T C 203 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:43:43:7:4:2,5:2,1:0,4:-7.3:PASS:115,0,40 chr1 24419496 . A G 253 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:92:76:12:3:7,5:0,2:7,3:-11.6:PASS:111,0,89 chr1 24421474 . G A 454 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:25:2:13,12:5,5:8,7:-16:PASS:153,0,166 chr1 24421950 . C G 317 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:82:49:12:2:8,4:4,2:4,2:-8.1:PASS:84,0,149 chr1 24447468 . G C 301 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:92:16:7:9,7:5,3:4,4:-13.9:PASS:127,0,145 chr1 24448084 . G A 410 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:139:24:6:11,13:6,8:5,5:-18:PASS:175,0,146 chr1 24465113 . C T 659 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:6:0,18:0,11:0,7:-30.1:PASS:304,54,0 chr1 24668667 . C G 314 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:133:31:5:16,15:8,10:8,5:-14.8:PASS:168,0,187 chr1 24706269 . A G 579 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:49:6:29,20:12,10:17,10:-17.7:PASS:176,0,274 chr1 24706292 . T C 633 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:47:7:28,19:13,6:15,13:-12.5:PASS:163,0,274 chr1 24710405 . A G 575 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:30:7:16,14:9,14:7,0:4.9:PASS:119,0,191 chr1 24979487 . C T 146 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:71:38:18:5:13,5:6,1:7,4:-3.6:PASS:73,0,197 chr1 25570081 . T C 1355 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:97:56:6:38,18:18,12:20,6:-8:PASS:132,0,365 chr1 25643553 . T C 347 PASS SNVHPOL=2;MQ=32;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:3:0,9:0,0:0,9:0:PASS:148,27,0 chr1 25717308 . G C 258 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:129:27:3:10,17:6,9:4,8:-23.4:PASS:211,0,126 chr1 25747230 . G C 198 PASS SNVHPOL=3;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:22:10:14,8:7,2:7,6:-8.7:PASS:115,0,181 chr1 25890189 . A G 3063 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:516:483:185:53:99,86:53,40:46,46:-51.7:PASS:370,0,370 chr1 25944741 . T C,G 388 PASS SNVHPOL=2;MQ=60;AC=1,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:99:99:19:4:9,10,0:9,6,0:0,4,0:-16.8:PASS:157,0,96,184,126,310 chr1 26131654 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:408:408:150:36:1,149:1,107:0,42:-118:PASS:370,370,0 chr1 26138262 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:409:409:137:39:0,137:0,74:0,63:-173.9:PASS:370,370,0 chr1 26140573 . C A 1590 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:75:29:45,30:31,22:14,8:-15.5:PASS:200,0,370 chr1 26142090 . G A 1908 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:630:597:237:51:128,109:48,49:80,60:-72.6:PASS:370,0,370 chr1 26150202 . A G 305 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:126:29:10:10,18:5,13:5,5:-18:PASS:218,0,123 chr1 26189652 . C T 321 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:34:5:17,17:10,7:7,10:-17.6:PASS:178,0,187 chr1 26349625 . G A 316 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:43:14:23,20:9,9:14,11:-22.6:PASS:196,0,224 chr1 26349886 . G C 475 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:225:66:17:29,37:9,13:20,24:-30:PASS:322,0,222 chr1 26357656 . C A 852 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:112:54:6:35,19:27,16:8,3:-10.4:PASS:146,0,319 chr1 26360227 . G A 581 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:298:113:22:62,51:23,17:39,34:-27.8:PASS:333,0,370 chr1 26448447 . A G 2191 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:221:68:13:36,32:24,20:12,12:-25.4:PASS:256,0,302 chr1 26448849 . T C 2686 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:342:309:93:9:47,46:23,26:24,20:-33.6:PASS:344,0,359 chr1 26515416 . G A 1926 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:323:290:116:36:65,51:28,17:37,34:-24.1:PASS:325,0,370 chr1 26527941 . G A 1678 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:311:278:125:26:73,52:24,16:49,36:-24.1:PASS:313,0,370 chr1 26584637 . G A 145 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:104:75:14:1:7,7:6,6:1,1:-5.9:PASS:110,0,103 chr1 26610891 . A C 700 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:4:0,23:0,11:0,12:-39:PASS:359,69,0 chr1 26627478 . T C 705 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:3:0,16:0,5:0,11:-22.8:PASS:270,48,0 chr1 26646726 . A G 1388 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:11:0,28:0,11:0,17:-40:PASS:370,84,0 chr1 26646730 . A G 1358 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:8:0,30:0,12:0,18:-42.3:PASS:370,90,0 chr1 26664968 . C T 292 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:15:6:9,6:2,3:7,3:-12.5:PASS:123,0,140 chr1 26670661 . C T 324 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:17:9:11,6:5,5:6,1:-4.5:PASS:86,0,173 chr1 26670752 . C T 888 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:52:52:23:10:0,22:0,13:0,9:-33.9:PASS:342,66,0 chr1 26671248 . A G 675 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:147:30:6:12,18:7,8:5,10:-21.2:PASS:211,0,144 chr1 26672187 . G A 242 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:108:15:5:6,9:2,3:4,6:-15:PASS:144,0,109 chr1 26673076 . G A 559 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:30:8:16,14:6,6:10,8:-17.7:PASS:155,0,180 chr1 26673108 . C T 521 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:23:12:15,8:4,4:11,4:-11.9:PASS:123,0,182 chr1 26673138 . G GCCT 598 PASS CIGAR=1M3I;RU=CCT;REFREP=2;IDREP=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:175:175:34:13,16:2,2:11,14:PASS:285,0,172 chr1 26688230 . A G 451 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:141:25:6:10,15:7,12:3,3:-15.2:PASS:196,0,138 chr1 26691286 . CCCACCGAGCGCTGGGGTGCCCCAG C 1163 PASS CIGAR=1M24D;RU=.;REFREP=1;IDREP=0;MQ=57;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:47:47:15:0,15:0,13:0,2:PASS:346,50,0 chr1 26751946 . G A 360 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:39:5:26,13:7,5:19,8:-13.4:PASS:130,0,266 chr1 26879920 . T C 1264 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:4:0,24:0,11:0,13:-38:PASS:360,72,0 chr1 27210721 . T C 772 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:5:0,16:0,7:0,9:-27.2:PASS:272,48,0 chr1 27278553 . G A 214 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:56:23:11:5:7,4:4,0:3,4:2.8:PASS:57,0,137 chr1 27427041 . T C 1419 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:8:0,24:0,15:0,9:-34.8:PASS:366,72,0 chr1 27676925 . G A 187 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:23:3:15,8:8,3:7,5:-11.8:PASS:118,0,192 chr1 27679797 . A G 340 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:1:0,6:0,6:0,0:0:PASS:118,18,0 chr1 27679954 . G A 111 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:76:8:4:3,5:1,2:2,3:-11.7:PASS:114,0,77 chr1 27680292 . A G 1067 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:4:0,16:0,8:0,8:-31.5:PASS:280,48,0 chr1 27688633 . G A 323 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:115:20:4:8,12:6,7:2,5:-18:PASS:163,0,112 chr1 27736325 . CGGA C 152 PASS CIGAR=1M3D;RU=GGA;REFREP=5;IDREP=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:61:61:23:5,8:4,4:1,4:PASS:144,0,58 chr1 28060574 . A G 485 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:36:4:19,17:9,9:10,8:-19.1:PASS:177,0,201 chr1 28282292 . T C 501 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:160:32:11:15,17:10,10:5,7:-22:PASS:195,0,170 chr1 28303893 . T C 369 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:222:189:49:4:25,24:8,9:17,15:-22.2:PASS:223,0,235 chr1 28793041 . G A 368 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:202:49:15:22,27:13,16:9,11:-25.4:PASS:251,0,199 chr1 28800277 . C A 132 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:92:24:7:15,9:3,3:12,6:-14.3:PASS:127,0,178 chr1 28864435 . A G 163 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:134:21:5:9,12:4,5:5,7:-18.5:PASS:170,0,141 chr1 29189597 . C T 230 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:66:8:3:4,4:1,1:3,3:-8:PASS:101,0,88 chr1 29529699 . T C 339 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:88:55:12:3:8,4:5,2:3,2:-9.9:PASS:90,0,147 chr1 29631909 . A G 553 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:28:5:17,11:10,3:7,8:-10:PASS:141,0,193 chr1 29639127 . G A 70 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:48:6:4:3,3:1,2:2,1:-7.3:PASS:83,0,89 chr1 31349602 . G A 673 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:406:373:139:53:75,64:50,25:25,39:-24.1:PASS:370,0,370 chr1 31351513 . G A 529 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:274:266:72:10:35,37:26,31:9,6:-16.3:PASS:302,0,271 chr1 31426815 . A G 682 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:5:0,23:0,3:0,20:-18.4:PASS:360,69,0 chr1 31898234 . T C 836 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:31:11:16,15:6,5:10,10:-15.2:PASS:173,0,186 chr1 31905889 . A ACAG 518 PASS CIGAR=1M3I;RU=CAG;REFREP=5;IDREP=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:90:61:18:11,6:7,3:4,3:PASS:87,0,167 chr1 32084904 . C T 543 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:21:6:12,9:7,6:5,3:-12.9:PASS:125,0,168 chr1 32092525 . A G 651 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:7:0,14:0,4:0,10:-22:PASS:256,42,0 chr1 32096265 . A G 559 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:50:50:17:1:5,12:5,10:0,2:-12.5:PASS:170,0,47 chr1 32127953 . G A 397 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:55:22:15:5:12,3:4,2:8,1:-3.2:PASS:57,0,184 chr1 32148571 . A G 960 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:2:0,20:0,6:0,14:-25.6:PASS:317,60,0 chr1 32158374 . T C 473 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:9:3:5,4:3,0:2,4:2.1:PASS:70,0,112 chr1 32164206 . T G 495 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:118:20:12:8,12:4,6:4,6:-20.3:PASS:178,0,115 chr1 32193647 . T C 352 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:67:12:2:7,5:7,4:0,1:-8.7:PASS:101,0,92 chr1 32196647 . C G 320 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:19:4:10,9:8,1:2,8:-3.2:PASS:123,0,130 chr1 32279629 . G A 229 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:102:29:4:18,11:10,3:8,8:-10:PASS:137,0,207 chr1 32280610 . T C 1152 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:4:0,26:0,7:0,19:-29.3:PASS:370,78,0 chr1 32672932 . G A 483 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:184:41:6:19,22:10,10:9,12:-23.4:PASS:223,0,183 chr1 33065947 . G C 1664 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:5:0,39:0,9:0,30:-34.6:PASS:370,117,0 chr1 33099637 . A G 249 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:41:4:24,17:8,5:16,12:-14.6:PASS:163,0,245 chr1 33133968 . T C 2184 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:1:0,39:0,16:0,23:-52.8:PASS:370,117,0 chr1 33134925 . T C 256 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:109:22:1:7,15:3,6:4,9:-19.3:PASS:197,0,106 chr1 33160878 . C T 1229 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:149:34:10:17,17:11,8:6,9:-17.4:PASS:184,0,185 chr1 33161212 . T C 2029 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:201:52:13:24,28:17,17:7,11:-27:PASS:253,0,198 chr1 33231380 . T G 121 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:58:9:5:3,6:2,6:1,0:0.7:PASS:93,0,78 chr1 33235626 . G A 434 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:14:4:9,5:3,3:6,2:-9.8:PASS:99,0,145 chr1 33409693 . G A 537 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:183:42:6:19,23:10,14:9,9:-22.8:PASS:230,0,181 chr1 33790496 . G A 114 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:102:70:14:2:8,6:3,4:5,2:-9.4:PASS:104,0,141 chr1 33820134 . C T 51 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:55:22:11:5:7,4:2,0:5,4:1.4:PASS:57,0,141 chr1 33832865 . A G 780 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:0:0,13:0,6:0,7:-26.5:PASS:242,39,0 chr1 33957152 . T G 2008 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:2:0,34:0,7:0,27:-29.3:PASS:370,102,0 chr1 33960062 . A G 1866 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:375:345:106:14:52,53:35,38:17,15:-27.1:PASS:370,0,370 chr1 34038214 . T C 1889 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:7:0,37:0,20:0,17:-55.1:PASS:370,111,0 chr1 34071525 . C T 880 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:11:0,33:0,17:0,16:-52.9:PASS:370,99,0 chr1 34285342 . G A 166 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:62:29:11:3:8,3:3,2:5,1:-4.3:PASS:64,0,147 chr1 34285381 . C T 199 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:48:12:3:8,4:3,3:5,1:-5.2:PASS:82,0,156 chr1 34329897 . T C 2556 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:54:4:0,54:0,34:0,20:-64.7:PASS:370,163,0 chr1 34330067 . A C 2306 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:185:56:22:23,33:12,23:11,10:-22.3:PASS:297,0,182 chr1 35226922 . A T 711 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:76:35:49,27:25,14:24,13:-18.2:PASS:171,0,370 chr1 35250720 . C T 412 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:192:62:15:34,28:14,13:20,15:-25.9:PASS:227,0,295 chr1 35259946 . G A 576 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:89:56:21:9:14,7:5,5:9,2:-6.7:PASS:91,0,164 chr1 35259961 . A G 1089 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:11:0,18:0,7:0,11:-27.3:PASS:290,54,0 chr1 35260769 . C T 1075 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:111:24:8:12,12:0,2:12,10:-11.8:PASS:147,0,115 chr1 35321453 . G T 376 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:169:40:10:19,21:11,8:8,13:-17.1:PASS:204,0,188 chr1 35562965 . G A 2266 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:158:158:64:8:1,63:1,47:0,16:-52.4:PASS:370,161,0 chr1 36316571 . A C 1165 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:8:0,18:0,10:0,8:-31.9:PASS:292,54,0 chr1 36553673 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:552:552:189:20:0,188:0,103:0,85:-235.3:PASS:370,370,0 chr1 36752152 . C T 2064 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:17:0,58:0,38:0,20:-63.2:PASS:370,175,0 chr1 36752433 . C T 2387 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:18:0,56:0,28:0,28:-83.9:PASS:370,169,0 chr1 36886117 . C T 546 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:163:39:7:17,22:11,16:6,6:-19.3:PASS:237,0,160 chr1 36888462 . A G 318 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:51:8:30,21:12,16:18,5:-7.6:PASS:173,0,284 chr1 36889005 . G A 151 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:26:6:14,12:6,2:8,10:-9.8:PASS:150,0,173 chr1 36893968 . A G 248 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:102:69:28:2:19,9:16,5:3,4:-9.1:PASS:103,0,228 chr1 36898067 . T C 407 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:143:27:4:12,15:9,8:3,7:-20.1:PASS:179,0,147 chr1 36927733 . G A 1153 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:4:0,23:0,8:0,15:-32.2:PASS:355,69,0 chr1 36937059 . A G 1916 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:285:285:79:19:37,42:20,21:17,21:-39.3:PASS:347,0,282 chr1 36938235 . G A 414 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:31:14:16,14:3,4:13,10:-14.8:PASS:151,0,179 chr1 37325477 . A C 892 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:5:0,24:0,16:0,8:-31.3:PASS:366,72,0 chr1 37947336 . G A 581 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:126:22:4:10,12:8,6:2,6:-15:PASS:161,0,133 chr1 38185647 . G A 329 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:78:11:6:5,6:5,3:0,3:-12.3:PASS:129,0,75 chr1 38185723 . C T 197 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:74:42:9:5:6,3:3,1:3,2:-5.7:PASS:76,0,140 chr1 38187447 . A G 274 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:55:22:9:1:6,3:3,3:3,0:2.1:PASS:57,0,129 chr1 38188740 . C T 408 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:89:15:2:7,8:4,7:3,1:-6.6:PASS:124,0,124 chr1 38188768 . C T 249 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:18:3:10,8:7,5:3,3:-11.2:PASS:104,0,153 chr1 38188787 . A G 363 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:19:4:10,9:5,4:5,5:-12.4:PASS:118,0,149 chr1 38449910 . T C 1441 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:5:0,23:0,9:0,14:-35.2:PASS:362,69,0 chr1 38463504 . C T 1041 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:3:0,14:0,5:0,9:-23.8:PASS:251,42,0 chr1 39340282 . C T 1261 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:9:0,57:0,40:0,17:-56.2:PASS:370,172,0 chr1 39352271 . G T 1181 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:3:0,48:0,30:0,18:-57.2:PASS:370,144,0 chr1 39549983 . G A 338 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:24:3:15,9:6,4:9,5:-15.1:PASS:131,0,188 chr1 39748921 . G A 248 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:28:5:15,13:13,12:2,1:-7.3:PASS:139,0,175 chr1 39893638 . G A 216 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:53:34:4:21,13:15,13:6,0:4.2:PASS:88,0,234 chr1 39908506 . G A 1428 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:122:35:7:20,15:8,7:12,8:-18:PASS:157,0,218 chr1 39914363 . G C 1119 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:32:6:19,13:8,5:11,8:-15.7:PASS:151,0,219 chr1 39988084 . G A 58 PASS SNVHPOL=4;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:12:0:9,3:3,1:6,2:-6.6:PASS:70,0,152 chr1 39988708 . A G 370 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:116:18:8:6,12:3,4:3,8:-17.2:PASS:172,0,113 chr1 40030823 . C T 341 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:120:23:8:11,12:6,8:5,4:-14.7:PASS:155,0,149 chr1 40149642 . G T 567 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:2:0,7:0,6:0,1:-8.5:PASS:151,21,0 chr1 40229368 . A G 359 PASS SNVHPOL=2;MQ=50;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:53:17:7:12,5:7,3:5,2:-7.9:PASS:88,0,180 chr1 40229454 . T C 102 PASS SNVHPOL=4;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:12:5:6,6:3,2:3,4:-10.7:PASS:112,0,118 chr1 40230336 . C G 42 PASS SNVHPOL=5;MQ=21;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:17:5:0:3,2:3,2:0,0:0:PASS:52,0,64 chr1 40236074 . A C 243 PASS SNVHPOL=3;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:84:38:9:24,14:12,10:12,4:-7.2:PASS:119,0,257 chr1 40349131 . G A 215 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:75:42:16:2:9,7:4,0:5,7:2.8:PASS:76,0,144 chr1 40363054 . G C 1614 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:3:0,32:0,24:0,8:-32.2:PASS:370,96,0 chr1 40533315 . T G 705 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:3:0,10:0,1:0,9:-9.4:PASS:192,30,0 chr1 40533326 . T G 824 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:4:0,10:0,1:0,9:-9.4:PASS:189,30,0 chr1 40533347 . T G 877 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:4:0,13:0,3:0,10:-18.4:PASS:241,39,0 chr1 40705156 . C T 869 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:272:239:105:9:62,43:30,24:32,19:-26.6:PASS:273,0,370 chr1 40737589 . T C 271 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:53:5:36,17:26,9:10,8:-11.2:PASS:130,0,348 chr1 40881041 . C G 2011 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:9:0,38:0,16:0,22:-51.2:PASS:370,114,0 chr1 40923019 . G A 596 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:155:46:7:17,29:14,19:3,10:-26.6:PASS:283,0,152 chr1 40980559 . G A 1394 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:8:0,61:0,32:0,29:-87.5:PASS:370,184,0 chr1 40980731 . G T 2739 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:25:0,64:0,40:0,24:-73.3:PASS:370,193,0 chr1 41204569 . C T 797 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:140:40:3:22,18:14,9:8,9:-18.2:PASS:175,0,218 chr1 41285087 . T C 1392 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:13:0,42:0,23:0,19:-60.1:PASS:370,126,0 chr1 41285553 . T C 876 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:476:443:164:54:87,77:49,43:38,34:-49.6:PASS:370,0,370 chr1 41285585 . G A 2758 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:488:488:167:52:79,88:41,41:38,47:-62.1:PASS:370,0,370 chr1 41285591 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:442:442:171:44:76,95:47,48:29,47:-70.2:PASS:370,0,370 chr1 41296828 . T G 1065 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:492:459:157:69:81,76:56,52:25,24:-40.4:PASS:370,0,370 chr1 41300690 . G A 392 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:116:32:8:10,22:5,13:5,9:-26:PASS:255,0,113 chr1 41485902 . C G 136 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:55:22:7:3:5,2:4,1:1,1:-5.9:PASS:56,0,111 chr1 41486245 . C T 153 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:104:18:8:9,9:4,4:5,5:-15.8:PASS:139,0,143 chr1 41976328 . T C 316 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:0:0,6:0,5:0,1:-9.4:PASS:139,18,0 chr1 41976345 . T C 44 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:29:6:2:4,2:4,1:0,1:-5.9:PASS:63,0,63 chr1 41978825 . C G 1657 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:8:0,34:0,26:0,8:-30.8:PASS:370,102,0 chr1 42048745 . T C 1522 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:56:56:33:3:1,32:0,5:1,27:-24.8:PASS:370,59,0 chr1 42049032 . G A 651 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:3:0,9:0,7:0,2:-13.9:PASS:189,27,0 chr1 42049140 . C G 722 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:4:0,17:0,14:0,3:-17.5:PASS:280,51,0 chr1 42693597 . A G 1966 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:2:0,38:0,20:0,18:-58.5:PASS:370,114,0 chr1 42880516 . T C 2343 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:54:16:0,53:0,24:0,29:-74.6:PASS:370,160,0 chr1 42898843 . A G 991 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:48:8:26,22:12,8:14,14:-19:PASS:201,0,254 chr1 42915727 . C G 224 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:17:3:9,8:4,3:5,5:-14.6:PASS:136,0,150 chr1 43042703 . C T 372 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:216:51:1:24,27:13,22:11,5:-13.9:PASS:255,0,214 chr1 43047057 . A G 419 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:184:47:5:20,27:14,18:6,9:-24:PASS:262,0,181 chr1 43201534 . G A 1255 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:146:76:29:48,28:25,13:23,15:-18.3:PASS:181,0,370 chr1 43212431 . A G 2872 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:6:0,56:0,36:0,20:-61.7:PASS:370,169,0 chr1 43212869 . A T 1260 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:197:50:13:25,25:17,14:8,11:-26.3:PASS:231,0,231 chr1 43296173 . C T 362 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:31:9:19,12:11,10:8,2:-7.4:PASS:126,0,209 chr1 43296195 . C T 387 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:31:11:16,15:8,13:8,2:-7.4:PASS:160,0,179 chr1 43395635 . C T 925 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:263:230:132:42:81,50:37,21:44,29:-25.4:PASS:265,0,370 chr1 43396414 . G A 2039 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:20:0,82:0,3:0,79:-19:PASS:370,247,0 chr1 43408966 . G A 1219 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:354:321:161:39:94,67:44,25:50,42:-26.6:PASS:355,0,370 chr1 43618596 . G A 653 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:11:0,21:0,10:0,11:-36:PASS:334,63,0 chr1 43632536 . C T 688 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:3:0,36:0,15:0,21:-50.7:PASS:370,108,0 chr1 43636484 . C G 753 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:3:0,28:0,17:0,11:-38:PASS:370,84,0 chr1 43638457 . T A 709 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:10:0,24:0,19:0,5:-23.8:PASS:366,72,0 chr1 43649508 . A G 1879 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:4:0,31:0,12:0,19:-42.5:PASS:370,93,0 chr1 43664218 . C T 837 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:4:0,37:0,18:0,19:-58.4:PASS:370,111,0 chr1 43675467 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:295:295:99:21:0,99:0,49:0,50:-137.9:PASS:370,298,0 chr1 43784956 . A G 1006 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:11:0,24:0,13:0,11:-40:PASS:365,72,0 chr1 43825644 . T C 1000 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:8:0,23:0,10:0,13:-36:PASS:353,69,0 chr1 43886494 . C T 1254 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:15:0,30:0,21:0,9:-34:PASS:370,90,0 chr1 43905286 . C T 96 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:28:8:5:4,4:4,4:0,0:0:PASS:63,0,72 chr1 43906896 . A G 824 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:2:0,16:0,13:0,3:-19.4:PASS:283,48,0 chr1 43917637 . G A 895 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:10:0,25:0,10:0,15:-36.5:PASS:370,75,0 chr1 44071221 . G A 175 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:92:59:18:3:12,6:6,1:6,5:-4.5:PASS:94,0,176 chr1 44072066 . C T 233 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:17:5:12,5:8,3:4,2:-9.7:PASS:85,0,177 chr1 44083507 . T C 457 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:134:22:7:9,13:6,7:3,6:-20.2:PASS:179,0,131 chr1 44083519 . G A 390 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:21:9:11,10:7,4:4,6:-14.4:PASS:153,0,162 chr1 44084739 . C T 325 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:20:8:11,9:8,7:3,2:-11.3:PASS:131,0,162 chr1 44086831 . C T 367 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:150:28:4:12,16:3,4:9,12:-16.8:PASS:193,0,148 chr1 44137257 . C A 335 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:37:6:27,10:19,5:8,5:-8.1:PASS:103,0,297 chr1 44290530 . A G 472 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:17:5:11,6:4,3:7,3:-11:PASS:100,0,168 chr1 44360114 . G A 319 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:130:26:3:13,13:4,8:9,5:-15.1:PASS:165,0,155 chr1 44401384 . A G 266 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:57:13:5:8,5:4,4:4,1:-5.9:PASS:92,0,149 chr1 44415415 . C T 657 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:142:29:10:14,15:6,5:8,10:-16.4:PASS:177,0,166 chr1 44424162 . G A 231 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:17:4:9,8:6,5:3,3:-15.2:PASS:136,0,141 chr1 44468235 . G A 1186 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:423:416:128:35:63,65:32,32:31,33:-51.7:PASS:370,0,370 chr1 44595113 . G C 912 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:32:7:21,11:14,9:7,2:-8.5:PASS:117,0,241 chr1 44595410 . A G 1462 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:64:18:39,25:17,10:22,15:-15.8:PASS:167,0,344 chr1 44595426 . G A 1174 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:63:21:42,21:20,6:22,15:-5.9:PASS:122,0,370 chr1 45292926 . C G 1667 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:354:338:100:21:49,51:24,26:25,25:-41.6:PASS:370,0,351 chr1 45444038 . G A 700 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:54:7:34,20:19,10:15,10:-17.6:PASS:161,0,323 chr1 45500046 . G A 415 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:24:2:14,10:9,7:5,3:-13.9:PASS:137,0,184 chr1 45504720 . G C 385 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:102:72:11:5:5,6:1,1:4,5:-8:PASS:107,0,102 chr1 45797505 . C G 1785 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:328:295:101:25:54,47:17,9:37,38:-16.5:PASS:329,0,370 chr1 45810923 . G A 603 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:187:154:60:12:35,25:20,13:15,12:-20.2:PASS:188,0,305 chr1 45973928 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:620:587:220:79:113,106:75,65:38,41:-60.8:PASS:370,0,370 chr1 46073489 . G A 2503 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:18:0,65:0,29:0,36:-87.1:PASS:370,196,0 chr1 46078854 . A G 1142 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:2:0,33:0,16:0,17:-52.4:PASS:370,99,0 chr1 46078884 . C T 1348 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:3:0,36:0,20:0,16:-53.1:PASS:370,108,0 chr1 46086077 . C T 373 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:2:0,7:0,3:0,4:-19.4:PASS:174,21,0 chr1 46087577 . G A 1044 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:9:0,24:0,4:0,20:-22:PASS:369,72,0 chr1 46476587 . T G 1563 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:5:0,28:0,9:0,19:-35.3:PASS:370,84,0 chr1 46493460 . T G 1173 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:8:0,24:0,10:0,14:-37.3:PASS:368,72,0 chr1 46496709 . A G 720 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:3:0,10:0,9:0,1:-9.4:PASS:196,30,0 chr1 46498375 . A G 851 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:4:0,15:0,3:0,12:-18.6:PASS:269,45,0 chr1 46499526 . A G 312 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:19:7:10,9:7,8:3,1:-6.6:PASS:121,0,157 chr1 46521517 . G A 946 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:5:0,25:0,18:0,7:-29.3:PASS:370,75,0 chr1 46521559 . A T 1267 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:4:0,35:0,21:0,14:-48.3:PASS:370,105,0 chr1 46655158 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:19:0,71:0,37:0,34:-99.9:PASS:370,214,0 chr1 46806550 . C T 75 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:21:9:3:6,3:1,0:5,3:0.7:PASS:56,0,111 chr1 46810530 . A G 678 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:37:7:22,15:14,9:8,6:-16.5:PASS:155,0,233 chr1 46810670 . T C 487 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:129:33:16:12,21:7,13:5,8:-22.7:PASS:228,0,126 chr1 46827485 . C T 429 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:208:175:53:10:29,24:11,9:18,15:-20.4:PASS:210,0,262 chr1 46871986 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:343:343:115:33:0,115:0,40:0,75:-115:PASS:370,346,0 chr1 46976837 . C T 317 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:58:8:5:4,4:1,1:3,3:-8:PASS:93,0,101 chr1 47395973 . G A 1277 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:7:0,18:0,2:0,16:-15.3:PASS:299,54,0 chr1 47611598 . T C 646 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:169:50:7:20,30:14,12:6,18:-24.9:PASS:291,0,166 chr1 47685455 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:39:0,89:0,60:0,29:-87:PASS:370,268,0 chr1 47717189 . A G 3052 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:217:217:73:11:0,73:0,36:0,37:-106:PASS:370,220,0 chr1 48459907 . C T 313 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:167:38:10:19,19:12,14:7,5:-16.2:PASS:202,0,194 chr1 48697733 . T G 2257 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:4:0,44:0,16:0,28:-51.3:PASS:370,132,0 chr1 48697751 . C T 296 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:38:6:23,15:9,5:14,10:-11.6:PASS:124,0,215 chr1 48764419 . C T 1492 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:230:67:4:30,37:19,26:11,11:-25.8:PASS:319,0,227 chr1 49224584 . G T 923 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:5:0,17:0,12:0,5:-25:PASS:288,51,0 chr1 50661411 . C T 1575 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:6:0,33:0,13:0,20:-44:PASS:370,99,0 chr1 51767352 . G A 160 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:54:10:0:6,4:3,1:3,3:-6.6:PASS:88,0,130 chr1 51826921 . T C 501 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:336:303:89:8:45,44:27,26:18,18:-33.6:PASS:338,0,347 chr1 51873951 . G A 1003 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:179:44:3:22,22:7,11:15,11:-22.2:PASS:214,0,206 chr1 52211277 . C T 540 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:53:2:30,23:15,8:15,15:-17.1:PASS:208,0,273 chr1 52264064 . A G 420 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:125:24:7:11,13:5,2:6,11:-10.5:PASS:160,0,151 chr1 52266242 . G A 908 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:179:45:4:23,22:12,19:11,3:-9.7:PASS:214,0,205 chr1 52290984 . T G 918 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:219:53:8:24,29:13,12:11,17:-25.4:PASS:269,0,216 chr1 52306063 . ATCT A 3070 PASS CIGAR=1M3D;RU=TCT;REFREP=4;IDREP=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:915:889:130:63,55:26,20:37,35:PASS:916,0,914 chr1 52520704 . A G 130 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:100:15:4:7,8:4,6:3,2:-10.4:PASS:135,0,121 chr1 52703491 . G C 413 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:221:64:3:33,31:15,16:18,15:-27:PASS:256,0,273 chr1 52828384 . A G 277 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:110:18:6:6,12:2,7:4,5:-18.5:PASS:182,0,107 chr1 53072454 . T C 1450 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:7:0,23:0,16:0,7:-27.7:PASS:350,69,0 chr1 53250650 . G A 873 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:3:0,19:0,11:0,8:-31.6:PASS:308,57,0 chr1 53320274 . G T 1864 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:11:0,34:0,10:0,24:-37.3:PASS:370,102,0 chr1 53442376 . A G 805 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:37:3:19,18:9,12:10,6:-16.6:PASS:191,0,202 chr1 53544439 . G A 450 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:18:12:11,7:5,4:6,3:-12.8:PASS:121,0,156 chr1 53553702 . A G 346 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:0:0,11:0,10:0,1:-8.5:PASS:198,33,0 chr1 53553754 . T C 233 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:60:10:5:6,4:5,3:1,1:-8:PASS:95,0,116 chr1 53792651 . A C 2911 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:283:283:95:21:0,95:0,53:0,42:-122.1:PASS:370,286,0 chr1 54060016 . G C 472 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:92:12:6:5,7:3,3:2,4:-12.5:PASS:127,0,105 chr1 54060248 . T C 627 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:118:20:6:7,13:3,5:4,8:-18:PASS:179,0,115 chr1 54359922 . C T 333 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:124:23:7:11,12:6,10:5,2:-10.5:PASS:158,0,145 chr1 54605319 . G GC 895 PASS CIGAR=1M1I;RU=C;REFREP=0;IDREP=1;MQ=59;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:26:26:11:0,9:0,8:0,1:PASS:214,29,0 chr1 54606804 . C T 848 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:6:0,18:0,16:0,2:-14.3:PASS:291,54,0 chr1 54607051 . A G 1363 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:6:0,29:0,7:0,22:-29.7:PASS:370,87,0 chr1 54661150 . C T 208 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:66:34:7:4:3,4:2,4:1,0:0.7:PASS:68,0,82 chr1 54681920 . G C 978 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:195:48:7:22,26:10,16:12,10:-21.8:PASS:247,0,192 chr1 54683856 . C G 752 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:110:26:4:15,11:10,7:5,4:-14.7:PASS:144,0,188 chr1 55119289 . G C 2734 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:289:256:87:16:47,40:20,13:27,27:-22.8:PASS:291,0,365 chr1 55119515 . T G 444 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:192:54:11:23,31:10,14:13,17:-31.9:PASS:284,0,189 chr1 55119534 . C T 413 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:49:13:29,20:12,11:17,9:-16.6:PASS:170,0,256 chr1 55119546 . A G 2640 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:16:0,50:0,22:0,28:-68.9:PASS:370,150,0 chr1 55139741 . A G 1149 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:8:0,18:0,12:0,6:-24.5:PASS:293,54,0 chr1 55167773 . T A 353 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:3:0,7:0,4:0,3:-19.4:PASS:176,21,0 chr1 55224131 . T C 547 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:138:56:9:19,37:9,18:10,19:-39.9:PASS:350,0,135 chr1 55224751 . C A 242 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:123:21:4:10,11:5,3:5,8:-13.9:PASS:158,0,138 chr1 55251689 . T C 1271 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:3:0,24:0,10:0,14:-38.4:PASS:370,72,0 chr1 55253766 . G C 296 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:144:35:10:19,16:4,5:15,11:-18.3:PASS:179,0,212 chr1 55273580 . G T 1009 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:4:0,13:0,6:0,7:-27:PASS:246,39,0 chr1 55277599 . T C 1305 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:11:0,26:0,20:0,6:-25:PASS:370,78,0 chr1 55319902 . A G 2274 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:6:0,34:0,6:0,28:-26.7:PASS:370,102,0 chr1 55457710 . G A 948 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:3:0,11:0,3:0,8:-19.4:PASS:224,33,0 chr1 55523033 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:19:0,63:0,32:0,31:-92:PASS:370,190,0 chr1 55524197 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:400:400:134:59:0,134:0,71:0,63:-175.8:PASS:370,370,0 chr1 55524237 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:400:400:134:45:0,134:0,40:0,94:-113.6:PASS:370,370,0 chr1 55541174 . A G 1131 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:2:0,13:0,5:0,8:-23.7:PASS:241,39,0 chr1 55638075 . G A 2286 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:3:0,54:0,37:0,17:-54.6:PASS:370,163,0 chr1 57258382 . G T 2007 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:340:340:114:17:0,114:0,48:0,66:-136.2:PASS:370,343,0 chr1 57341737 . C T 591 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:306:273:93:19:50,43:35,26:15,17:-33.3:PASS:308,0,370 chr1 57378149 . G T 1045 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:254:221:104:23:62,42:40,24:22,18:-29.1:PASS:256,0,370:57378149 chr1 57378150 . C T 1002 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:282:249:104:23:60,44:41,25:19,19:-30.5:PASS:284,0,370:57378149 chr1 57378198 . T C 1508 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:341:341:103:37:49,54:33,35:16,19:-36:PASS:370,0,338 chr1 57383315 . G C 1648 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:371:338:172:21:102,70:55,38:47,32:-39.9:PASS:370,0,370 chr1 57422484 . C T 1323 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:6:0,25:0,16:0,9:-34.8:PASS:370,75,0 chr1 58971831 . G A 1709 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:183:44:8:20,24:4,13:16,11:-21.2:PASS:239,0,180 chr1 58999651 . T G 1065 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:227:53:8:25,28:15,18:10,10:-24.5:PASS:265,0,226 chr1 59002221 . T C 1518 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:267:234:81:12:44,37:30,27:14,10:-20:PASS:268,0,344 chr1 59004762 . G A 762 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:391:360:112:20:56,56:30,27:26,29:-41.6:PASS:370,0,370 chr1 59042311 . T G 2982 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:317:128:65:55,73:31,37:24,36:-62.4:PASS:370,0,314 chr1 59125683 . C T 244 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:190:43:6:21,22:16,15:5,7:-22:PASS:225,0,201 chr1 59127086 . G A 336 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:181:42:4:20,22:11,10:9,12:-22.9:PASS:216,0,194 chr1 59142713 . T C 850 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:82:49:4:34,15:12,5:22,10:-11.6:PASS:117,0,328 chr1 59147926 . T C 1686 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:303:270:83:11:43,40:25,26:18,14:-25.5:PASS:305,0,338 chr1 59787350 . T G 633 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:8:0,28:0,9:0,19:-33.4:PASS:370,84,0 chr1 59844471 . G A 712 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:5:0,27:0,13:0,14:-45.8:PASS:370,81,0 chr1 60503762 . T C 252 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:167:34:3:16,18:5,5:11,13:-17.3:PASS:204,0,169 chr1 61869783 . G A 761 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:155:32:6:14,18:8,15:6,3:-11:PASS:199,0,152 chr1 62232031 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:217:217:73:12:0,73:0,52:0,21:-66.2:PASS:370,220,0 chr1 62261168 . A G 1281 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:6:0,14:0,9:0,5:-24.3:PASS:257,42,0 chr1 62330080 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:10:0,69:0,28:0,41:-83.9:PASS:370,208,0 chr1 62456014 . G A 365 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:182:52:3:21,31:10,12:11,19:-27.9:PASS:297,0,179 chr1 62483599 . G A 357 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:198:54:7:23,31:13,11:10,20:-24.2:PASS:289,0,195 chr1 62516683 . G C 242 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:44:2:27,17:14,7:13,10:-15.8:PASS:156,0,271 chr1 62579823 . G A 71 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:20:8:14,6:6,4:8,2:-7.8:PASS:100,0,188 chr1 62594593 . C T 561 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:129:24:5:9,15:3,8:6,7:-20.9:PASS:200,0,126 chr1 62672546 . G A 2433 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:289:256:75:9:39,36:26,17:13,19:-27.2:PASS:291,0,299 chr1 62703977 . G A 180 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:99:11:3:4,7:2,3:2,4:-15.6:PASS:140,0,98 chr1 62728784 . A G 1481 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:5:0,31:0,28:0,3:-17.9:PASS:370,93,0 chr1 62728838 . T C 1366 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:9:0,32:0,24:0,8:-31.5:PASS:370,96,0 chr1 62728861 . T C 1574 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:13:0,33:0,21:0,12:-41.5:PASS:370,99,0 chr1 62728918 . G A 1730 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:5:0,37:0,12:0,25:-40.8:PASS:370,111,0 chr1 62734089 . C T 153 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:98:21:9:12,9:5,5:7,4:-12.8:PASS:133,0,171 chr1 62738904 . T C 567 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:3:0,7:0,7:0,0:0:PASS:131,21,0 chr1 62739198 . G A 435 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:127:24:8:10,14:8,6:2,8:-16.5:PASS:181,0,124 chr1 62740065 . A G 1441 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:15:0,42:0,20:0,22:-63.3:PASS:370,126,0 chr1 62740446 . T C 2139 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:12:0,36:0,24:0,12:-43.1:PASS:370,108,0 chr1 62740449 . T C 2239 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:11:0,37:0,24:0,13:-45.8:PASS:370,111,0 chr1 62740752 . G A 288 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:44:22:23,21:7,2:16,19:-8.1:PASS:191,0,213 chr1 63881552 . C T 1347 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:39:4:25,14:13,9:12,5:-11.7:PASS:140,0,264 chr1 63975830 . T C 1873 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:100:100:39:9:0,38:0,33:0,5:-22.3:PASS:370,114,0 chr1 63991267 . T C 733 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:172:47:6:25,22:19,18:6,4:-14.5:PASS:207,0,240 chr1 64097432 . C T 2146 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:205:69:8:38,31:10,9:28,22:-21.1:PASS:240,0,320 chr1 64608329 . G T 2056 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:8:0,44:0,12:0,32:-43.1:PASS:370,132,0 chr1 64624842 . A G 1035 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:254:65:6:31,34:7,14:24,20:-33.2:PASS:290,0,256 chr1 65113568 . T C 1341 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:5:0,18:0,12:0,6:-25.6:PASS:295,54,0 chr1 65310489 . T C 996 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:121:21:7:10,11:7,5:3,6:-15.5:PASS:156,0,145 chr1 65858145 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:427:394:193:21:113,80:66,41:47,39:-44.6:PASS:370,0,370 chr1 65860687 . A C 1536 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:140:45:8:26,19:10,9:16,10:-19.1:PASS:174,0,255 chr1 66058513 . A G 1468 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:7:0,55:0,20:0,35:-62.5:PASS:370,166,0 chr1 66067109 . T C 2710 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:11:0,83:0,54:0,29:-84.7:PASS:370,250,0 chr1 66713196 . C G 540 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:360:327:115:8:61,54:52,39:9,15:-33.2:PASS:362,0,370 chr1 66831370 . G A 994 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:153:31:2:15,16:10,12:5,4:-15.5:PASS:188,0,175 chr1 67266756 . T A 718 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:2:0,18:0,13:0,5:-23.4:PASS:302,54,0 chr1 67288045 . C T 324 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:187:49:6:25,24:22,20:3,4:-17.2:PASS:222,0,231 chr1 67292585 . C T 625 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:279:279:85:11:38,47:22,31:16,16:-30.6:PASS:370,0,276 chr1 67390416 . G C 868 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:12:0,22:0,8:0,14:-30.4:PASS:336,66,0 chr1 67390468 . C G 792 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:7:0,22:0,5:0,17:-24.8:PASS:353,66,0 chr1 67558739 . C T 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:7:0,69:0,56:0,13:-45.8:PASS:370,208,0 chr1 67560956 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:301:301:101:12:0,101:0,54:0,47:-134.9:PASS:370,304,0 chr1 67633812 . G T 749 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:1:0,31:0,20:0,11:-39.5:PASS:370,93,0 chr1 67685387 . T C 2465 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:89:89:45:9:1,43:0,18:1,25:-57.9:PASS:370,92,0 chr1 67795319 . T C 556 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:59:26:53:6:41,12:22,7:19,5:-6.1:PASS:61,0,370 chr1 68614320 . G A 119 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:17:5:12,5:6,4:6,1:-4.5:PASS:79,0,181 chr1 68624878 . C T 568 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:26:2:16,10:4,6:12,4:-8.2:PASS:125,0,202 chr1 68903942 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:517:517:191:16:88,103:29,43:59,60:-73.9:PASS:370,0,370 chr1 70225923 . G A 236 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:167:37:5:17,20:12,11:5,9:-21.8:PASS:202,0,177 chr1 71512643 . C A 197 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:142:25:9:11,14:5,6:6,8:-18.8:PASS:178,0,147 chr1 71538191 . A G 448 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:241:208:78:12:44,34:20,13:24,21:-21.4:PASS:243,0,357 chr1 72058552 . G A 2252 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:10:0,45:0,21:0,24:-67.1:PASS:370,135,0 chr1 74575182 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:11:0,89:0,43:0,46:-122.8:PASS:370,268,0 chr1 74665493 . G A 2250 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:10:0,67:0,23:0,44:-72.9:PASS:370,202,0 chr1 75036812 . C T 1013 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:6:0,23:0,20:0,3:-19.4:PASS:357,69,0 chr1 75037845 . A G 1760 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:59:11:33,26:15,17:18,9:-16.3:PASS:212,0,261 chr1 75037857 . CCCT C 1021 PASS CIGAR=1M3D;RU=CCT;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:393:393:71:29,35:19,18:10,17:PASS:616,0,390 chr1 75038228 . A C 2827 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:333:300:95:20:49,46:32,21:17,25:-29.9:PASS:334,0,370 chr1 75055419 . T C 523 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:270:237:97:12:56,41:36,27:20,14:-24.7:PASS:272,0,370 chr1 75172001 . T A 226 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:78:32:4:22,10:14,4:8,6:-9.8:PASS:113,0,245 chr1 75190452 . C T 999 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:148:27:4:12,15:8,8:4,7:-21.7:PASS:189,0,146 chr1 75622616 . C T 1212 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:40:6:24,16:13,12:11,4:-11.9:PASS:160,0,249 chr1 75681511 . T C 1757 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:192:45:3:20,25:8,12:12,13:-26.9:PASS:245,0,189 chr1 75699771 . A G 842 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:4:0,40:0,13:0,27:-44.3:PASS:370,120,0 chr1 75702674 . G A 355 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:194:59:3:31,28:12,20:19,8:-12:PASS:228,0,264 chr1 76198785 . G A 2634 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:13:0,79:0,41:0,38:-111:PASS:370,238,0 chr1 76227022 . A G 1312 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:12:0,38:0,14:0,24:-47.8:PASS:370,114,0 chr1 76257892 . A T 1655 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:3:0,27:0,13:0,14:-45.3:PASS:370,81,0 chr1 77093180 . C A 1626 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:184:41:7:18,23:10,14:8,9:-23.5:PASS:236,0,181 chr1 77510008 . C A 885 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:406:373:166:65:94,72:55,44:39,28:-37.7:PASS:370,0,370 chr1 77634948 . G A 2278 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:1:0,37:0,23:0,14:-48:PASS:370,111,0 chr1 77759578 . A G 425 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:241:208:67:7:36,31:14,18:22,13:-19.4:PASS:242,0,297 chr1 77763542 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:8:0,59:0,31:0,28:-84.4:PASS:370,178,0 chr1 78184325 . A G 136 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:48:7:2:4,3:2,1:2,2:-6.4:PASS:82,0,108 chr1 78201745 . G T 1633 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:178:145:45:4:26,19:14,14:12,5:-12.7:PASS:180,0,250 chr1 78585086 . T C 215 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:110:24:2:13,11:12,9:1,2:-13.3:PASS:144,0,157 chr1 79093818 . A G 644 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:296:263:111:13:64,47:40,33:24,14:-20.7:PASS:298,0,370 chr1 79095581 . T C 573 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:310:310:91:14:42,49:15,24:27,25:-42.2:PASS:370,0,307 chr1 79392756 . C A 2949 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:6:0,59:0,19:0,40:-60.9:PASS:370,178,0 chr1 82421596 . C T 2316 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:119:119:44:2:0,43:0,23:0,20:-63:PASS:370,129,0 chr1 84356065 . C T 368 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:157:34:5:14,20:9,13:5,7:-21.8:PASS:219,0,154 chr1 84864256 . G C 248 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:22:2:14,8:7,5:7,3:-12.1:PASS:125,0,188 chr1 84880380 . T C 731 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:383:350:114:10:59,55:36,39:23,16:-26.1:PASS:370,0,370 chr1 84944989 . A G 458 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:2:0,19:0,17:0,2:-15.3:PASS:313,57,0 chr1 84945124 . A G 291 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:140:26:3:11,15:4,8:7,7:-19.1:PASS:181,0,138 chr1 85113203 . T C 1501 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:56:3:33,23:16,12:17,11:-21.4:PASS:186,0,303 chr1 85113229 . A G 1625 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:185:62:1:34,28:17,12:17,16:-21.3:PASS:219,0,303 chr1 85488030 . G A 1363 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:60:6:33,27:17,10:16,17:-19.3:PASS:225,0,281 chr1 85624549 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:12:0,68:0,45:0,23:-72.3:PASS:370,205,0 chr1 85624864 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:15:0,82:0,22:0,60:-68.2:PASS:370,247,0 chr1 85648620 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:454:454:152:14:0,152:0,68:0,84:-185.1:PASS:370,370,0 chr1 85742012 . G C 910 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:18:0,48:0,21:0,27:-64:PASS:370,144,0 chr1 86249206 . T C 286 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:152:35:3:17,18:9,5:8,13:-13.8:PASS:187,0,180 chr1 86375654 . C G 1071 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:102:42:2:27,15:14,10:13,5:-12.5:PASS:137,0,271 chr1 86557967 . G A 271 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:174:41:3:21,20:10,11:11,9:-21.8:PASS:209,0,211 chr1 86590915 . G A 2741 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:15:0,66:0,40:0,26:-78.8:PASS:370,199,0 chr1 86591837 . G A 1536 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:11:0,75:0,14:0,61:-47.7:PASS:370,226,0 chr1 86818572 . T C 2111 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:3:0,44:0,31:0,13:-46.2:PASS:370,132,0 chr1 86820267 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:8:0,57:0,36:0,21:-66.9:PASS:370,172,0 chr1 86838158 . C T 2162 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:8:0,43:0,26:0,17:-55.6:PASS:370,129,0 chr1 86847955 . G A 1668 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:187:52:6:27,25:18,14:9,11:-25.5:PASS:222,0,249 chr1 86852621 . A G 913 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:4:0,49:0,33:0,16:-53.9:PASS:370,147,0 chr1 86913265 . C T 301 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:42:8:22,20:11,12:11,8:-18.6:PASS:191,0,211 chr1 86920904 . A G 478 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:279:246:75:16:39,36:26,25:13,11:-22.2:PASS:280,0,316 chr1 86939130 . C T 1348 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:127:33:1:19,14:15,9:4,5:-18.3:PASS:162,0,212 chr1 86952324 . A G 945 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:11:0,44:0,21:0,23:-65.3:PASS:370,132,0 chr1 86959173 . T C 1241 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:16:0,64:0,46:0,18:-57.9:PASS:370,193,0 chr1 87045896 . TCCTACA T 3070 PASS CIGAR=1M6D;RU=CCTACA;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:1253:1253:203:91,102:46,52:45,50:PASS:999,0,999 chr1 89225976 . T C 892 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:5:0,50:0,19:0,31:-60:PASS:370,150,0 chr1 89271574 . T C 1320 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:9:0,76:0,31:0,45:-92.8:PASS:370,229,0 chr1 89322982 . G A 2851 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:14:0,49:0,24:0,25:-73.5:PASS:370,147,0 chr1 89426902 . G A 523 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:165:59:6:22,37:19,29:3,8:-25.4:PASS:349,0,162 chr1 89474818 . A G 1319 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:2:0,69:0,27:0,42:-79.1:PASS:370,208,0 chr1 89475135 . C T 1054 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:5:0,49:0,23:0,26:-70.6:PASS:370,147,0 chr1 89521841 . G C 1926 PASS SNVHPOL=4;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:328:328:110:18:0,110:0,41:0,69:-118.4:PASS:370,331,0 chr1 89522646 . G C 2342 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:8:0,37:0,23:0,14:-47.3:PASS:370,111,0 chr1 89656974 . G A 418 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:255:78:5:40,38:21,20:19,18:-31.6:PASS:290,0,308 chr1 89847372 . G T 522 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:76:31:6:21,10:12,7:9,3:-10.1:PASS:111,0,237 chr1 89847411 . C T 505 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:87:54:32:2:23,9:10,7:13,2:-3.4:PASS:89,0,248 chr1 89847444 . A G 731 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:30:7:20,10:7,5:13,5:-11.2:PASS:111,0,231 chr1 89849742 . A T 742 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:142:28:6:14,14:8,7:6,7:-19.5:PASS:176,0,169 chr1 90048248 . C T 243 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:27:6:15,12:13,10:2,2:-11.3:PASS:143,0,184 chr1 90049040 . A G 1137 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:216:83:8:47,36:29,21:18,15:-27.5:PASS:250,0,370 chr1 90178743 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:12:0,70:0,31:0,39:-90.6:PASS:370,211,0 chr1 90486412 . T G 2289 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:92:92:45:5:1,44:0,26:1,18:-50.3:PASS:370,95,0 chr1 90493026 . G A 2344 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:12:0,44:0,28:0,16:-53.3:PASS:370,132,0 chr1 91728053 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:4:0,67:0,25:0,42:-76.6:PASS:370,202,0 chr1 91781413 . T G 1980 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:255:71:7:34,37:25,25:9,12:-27.3:PASS:290,0,265 chr1 91782031 . T C 442 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:250:239:63:10:30,33:9,10:21,23:-22.6:PASS:275,0,247 chr1 91784887 . G A 489 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:197:49:9:22,27:10,6:12,21:-15.3:PASS:253,0,194 chr1 91845734 . T C 411 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:202:53:1:26,26:21,14:5,12:-23.5:PASS:237,0,241 chr1 91851253 . T C 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:6:0,68:0,37:0,31:-92.7:PASS:370,205,0 chr1 91859795 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:6:0,79:0,41:0,38:-109.7:PASS:370,238,0 chr1 91859801 . A G 414 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:160:85:4:54,31:28,15:26,16:-21.4:PASS:195,0,370 chr1 91980447 . A G 2872 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:6:0,53:0,35:0,18:-59.5:PASS:370,160,0 chr1 92174260 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:7:0,66:0,48:0,18:-56.7:PASS:370,199,0 chr1 92177938 . A G 1205 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:237:204:59:4:30,29:15,10:15,19:-18.9:PASS:239,0,265 chr1 92185657 . C T 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:286:286:96:24:0,96:0,73:0,23:-69.2:PASS:370,289,0 chr1 92262874 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:474:441:152:31:78,73:59,51:19,22:-40.6:PASS:370,0,370 chr1 92327045 . G A 225 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:23:4:11,12:6,11:5,1:-5.2:PASS:146,0,154 chr1 92428495 . C A 2324 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:5:0,66:0,18:0,48:-59.3:PASS:370,199,0 chr1 92540346 . TC T 824 PASS CIGAR=1M1D;RU=C;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:310:267:46:25,19:13,9:12,10:PASS:307,0,371 chr1 92540886 . G A 877 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:245:69:6:35,34:27,16:8,18:-24.1:PASS:280,0,281 chr1 92646021 . G A 2354 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:249:70:6:32,38:13,23:19,15:-27.2:PASS:320,0,246 chr1 92647223 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:355:355:119:12:0,119:0,53:0,66:-149.2:PASS:370,358,0 chr1 92647532 . C A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:11:0,89:0,44:0,45:-127.5:PASS:370,268,0 chr1 92789305 . T C 420 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:64:19:36,28:21,15:15,13:-25.6:PASS:223,0,315 chr1 92979354 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:430:430:144:15:0,144:0,72:0,72:-197.3:PASS:370,370,0 chr1 93089823 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:10:0,75:0,43:0,32:-94.7:PASS:370,226,0 chr1 93160902 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:313:313:105:12:0,105:0,72:0,33:-95.6:PASS:370,316,0 chr1 93299193 . G A 1489 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:699:666:257:24:136,120:51,39:85,81:-50.9:PASS:370,0,370 chr1 93580581 . G C 2320 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:1:0,54:0,22:0,32:-66.7:PASS:370,163,0 chr1 93620318 . A G 488 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:67:9:38,29:13,15:25,14:-20.7:PASS:223,0,327 chr1 93620393 . G A 1623 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:183:72:3:27,45:3,9:24,36:-25.5:PASS:370,0,180 chr1 93672688 . C T 1023 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:168:47:3:25,22:23,18:2,4:-17.3:PASS:203,0,234 chr1 93672723 . A C 2613 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:4:0,50:0,43:0,7:-29.4:PASS:370,150,0 chr1 93676434 . C T 412 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:188:42:2:19,23:7,13:12,10:-22.1:PASS:231,0,186 chr1 93720070 . C G 866 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:137:41:5:24,17:18,12:6,5:-17.1:PASS:171,0,246 chr1 93826178 . A T 223 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:92:20:4:12,8:3,4:9,4:-13.3:PASS:127,0,166 chr1 94048153 . T C 236 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:34:6:19,15:12,8:7,7:-18:PASS:160,0,203 chr1 94048485 . C G 204 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:22:10:12,10:3,2:9,8:-10.3:PASS:134,0,164 chr1 94341267 . A G 882 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:1:0,39:0,21:0,18:-58.1:PASS:370,117,0 chr1 94342564 . C A 1420 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:13:0,82:0,45:0,37:-108.9:PASS:370,247,0 chr1 94343023 . A G 2270 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:397:397:133:16:0,133:0,58:0,75:-163.2:PASS:370,370,0 chr1 94343233 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:301:301:101:8:0,101:0,39:0,62:-114.9:PASS:370,304,0 chr1 94471075 . A G 2231 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:3:0,52:0,22:0,30:-68.7:PASS:370,156,0 chr1 94497337 . C T 998 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:480:447:196:36:110,86:65,59:45,27:-30.9:PASS:370,0,370 chr1 94544233 . G A 255 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:152:119:38:6:23,15:8,5:15,10:-15.7:PASS:154,0,242:. chr1 94578548 . T C 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:1074:1074:358:68:0,358:0,165:0,193:-448.2:PASS:370,370,0 chr1 94639447 . C T 1616 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:232:56:5:26,30:20,19:6,11:-28.9:PASS:271,0,231 chr1 95001600 . A C 2175 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:112:112:43:11:0,42:0,20:0,22:-63.2:PASS:370,126,0 chr1 95330372 . G A 1662 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:46:9:27,19:15,11:12,8:-18.2:PASS:173,0,265 chr1 95709821 . T C 2604 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:2:0,50:0,37:0,13:-43.8:PASS:370,150,0 chr1 95709939 . T G 2790 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:14:0,71:0,50:0,21:-66:PASS:370,214,0 chr1 97981395 . T C 448 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:174:73:3:44,29:26,18:18,11:-19.9:PASS:208,0,370 chr1 98348885 . G A 1825 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:122:122:55:3:1,54:0,17:1,37:-55.8:PASS:370,125,0 chr1 99150446 . C A 493 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:50:5:27,23:24,17:3,6:-19.8:PASS:202,0,252 chr1 99164434 . G A 1277 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:198:50:8:25,25:14,8:11,17:-16.4:PASS:233,0,232 chr1 99225627 . G A 1870 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:5:0,28:0,13:0,15:-45.4:PASS:370,84,0 chr1 100154467 . G A 724 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:224:56:6:27,29:16,17:11,12:-27:PASS:259,0,237 chr1 100155193 . G T 986 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:293:293:96:15:43,53:27,31:16,22:-40.7:PASS:370,0,290 chr1 100174670 . C T 807 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:249:76:6:40,36:15,18:25,18:-28.3:PASS:284,0,326 chr1 100203648 . C T 677 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:34:8:18,16:9,12:9,4:-13.3:PASS:184,0,198 chr1 100203693 . G A 666 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:46:3:26,20:16,14:10,6:-15.6:PASS:186,0,249 chr1 100336361 . C T 2462 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:6:0,57:0,27:0,30:-81.7:PASS:370,172,0 chr1 100358103 . C T 1754 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:12:0,83:0,31:0,52:-93:PASS:370,250,0 chr1 100459132 . G A 668 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:274:241:75:4:40,35:29,27:11,8:-19.6:PASS:276,0,324 chr1 100472604 . A G 1538 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:168:46:3:25,21:16,12:9,9:-22.8:PASS:203,0,245 chr1 100573489 . G A 662 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:205:61:5:26,35:4,12:22,23:-32.5:PASS:315,0,202 chr1 100598866 . G A 335 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:139:139:30:2:13,17:5,8:8,9:-23:PASS:202,0,136:100598866 chr1 100598867 . C T 302 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:156:133:25:7:12,13:3,6:9,7:-18.4:PASS:168,0,153:100598866 chr1 100618005 . CTCT C 967 PASS CIGAR=1M3D;RU=TCT;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:279:279:42:20,22:8,14:12,8:PASS:382,0,276 chr1 100672060 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:660:660:235:43:1,233:1,80:0,153:-204.2:PASS:370,370,0 chr1 101203827 . G A 2041 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:2:0,38:0,19:0,19:-61.1:PASS:370,114,0 chr1 102296279 . T C 780 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:223:86:9:49,37:25,25:24,12:-17.1:PASS:257,0,370 chr1 103352451 . A G 1640 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:9:0,77:0,51:0,26:-77.8:PASS:370,232,0 chr1 103354138 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:554:554:185:20:0,185:0,83:0,102:-229.1:PASS:370,370,0 chr1 103354428 . A G 1788 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:197:197:71:6:0,70:0,22:0,48:-69.4:PASS:370,211,0 chr1 103379918 . G A 997 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:3:0,36:0,19:0,17:-56:PASS:370,108,0 chr1 104166496 . T C 2132 PASS SNVHPOL=3;MQ=34;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:437:404:143:6:73,70:42,49:31,21:-27.9:PASS:370,0,370 chr1 104166590 . C G 1166 PASS SNVHPOL=2;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:408:375:267:17:168,99:88,63:80,36:-25.3:PASS:370,0,370 chr1 107979396 . A C 2676 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:8:0,61:0,29:0,32:-86.3:PASS:370,184,0 chr1 108307727 . T A 691 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:27:6:15,12:8,9:7,3:-11:PASS:147,0,182 chr1 108313258 . C T 2018 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:5:0,77:0,38:0,39:-112.2:PASS:370,232,0 chr1 108319891 . A G 301 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:30:0:16,14:8,5:8,9:-15.7:PASS:163,0,190 chr1 108771721 . T C 119 PASS SNVHPOL=3;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:28:6:21,7:11,3:10,4:-7.8:PASS:80,0,252 chr1 109265029 . G T 343 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:142:27:5:12,15:8,9:4,6:-18.8:PASS:184,0,140 chr1 109268573 . T C 832 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:152:34:5:17,17:16,12:1,5:-19.7:PASS:187,0,172 chr1 109273456 . A G 965 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:45:1:31,14:9,4:22,10:-13.3:PASS:120,0,320 chr1 109338861 . G C 663 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:102:29:1:16,13:14,12:2,1:-7.3:PASS:136,0,187 chr1 109366286 . C T 240 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:45:2:23,22:4,2:19,20:-9:PASS:197,0,221 chr1 109391662 . G C 565 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:255:80:9:42,38:14,11:28,27:-22.5:PASS:290,0,332 chr1 109394978 . G A 1124 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:286:283:79:20:38,41:20,23:18,18:-33.1:PASS:321,0,283 chr1 109395105 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:316:316:106:12:0,106:0,43:0,63:-124:PASS:370,319,0 chr1 109465165 . ACTT A 3070 PASS CIGAR=1M3D;RU=CTT;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:551:517:105:66,37:29,14:37,23:PASS:548,0,999 chr1 109479978 . G T 904 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:163:34:5:16,18:4,4:12,14:-14.8:PASS:198,0,174 chr1 109482304 . G A 520 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:194:57:6:30,27:21,19:9,8:-20:PASS:229,0,268 chr1 109486196 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:19:0,62:0,33:0,29:-86.7:PASS:370,187,0 chr1 109656946 . T C 841 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:7:0,12:0,7:0,5:-23:PASS:231,36,0 chr1 109735298 . T C 438 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:144:34:9:17,17:12,12:5,5:-15.5:PASS:179,0,176 chr1 109735416 . A C 509 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:160:32:10:14,18:6,6:8,12:-18.9:PASS:204,0,158 chr1 109737063 . C T 390 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:81:34:5:22,12:15,9:7,3:-9.1:PASS:116,0,236 chr1 109737090 . G A 369 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:41:10:28,13:15,9:13,4:-8.9:PASS:118,0,284 chr1 109737132 . T C 520 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:54:6:33,21:17,12:16,9:-16.8:PASS:173,0,307 chr1 109737172 . C T 528 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:59:9:38,21:20,12:18,9:-15.8:PASS:162,0,357 chr1 109742485 . G A 390 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:115:20:11:7,13:3,11:4,2:-11.2:PASS:180,0,112 chr1 109792735 . A ACGC 3070 PASS CIGAR=1M3I;RU=CGC;REFREP=5;IDREP=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:74:74:47:3,43:3,40:0,3:PASS:928,77,0 chr1 109794252 . T C 2880 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:25:0,68:0,36:0,32:-93.2:PASS:370,205,0 chr1 109795026 . T C 2452 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:8:0,39:0,19:0,20:-59.7:PASS:370,117,0 chr1 109795608 . T C 2610 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:10:0,59:0,27:0,32:-81:PASS:370,178,0 chr1 109806834 . C T 2492 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:407:374:148:57:81,67:55,44:26,23:-36.5:PASS:370,0,370 chr1 109807099 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:609:576:212:30:111,101:32,37:79,64:-61.5:PASS:370,0,370 chr1 109811869 . G A 1089 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:369:336:127:47:70,57:39,23:31,34:-28.5:PASS:370,0,370 chr1 109816176 . A C 3070 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:320:320:111:32:0,110:0,32:0,78:-92.8:PASS:370,331,0 chr1 109823784 . G A 499 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:54:7:35,19:14,5:21,14:-10.7:PASS:146,0,319 chr1 109838918 . C T 1117 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:9:0,23:0,17:0,6:-26.7:PASS:360,69,0 chr1 109839433 . A G 786 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:2:0,11:0,5:0,6:-23:PASS:210,33,0 chr1 109839738 . C A 308 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:92:59:22:2:16,6:7,4:9,2:-7.1:PASS:94,0,213 chr1 109884775 . T G 582 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:350:317:110:13:58,52:11,7:47,45:-17:PASS:352,0,370 chr1 109897103 . A G 403 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:180:45:4:19,26:9,11:10,15:-26.1:PASS:255,0,177 chr1 110086451 . G A 430 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:151:29:15:13,16:8,12:5,4:-14:PASS:186,0,155 chr1 110148974 . C T 324 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:53:7:30,23:19,13:11,10:-22.5:PASS:197,0,269 chr1 110170896 . T C 769 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:17:6:9,8:5,5:4,3:-13:PASS:130,0,138 chr1 110201699 . T C 3070 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:322:322:108:23:0,108:0,60:0,48:-135.5:PASS:370,325,0 chr1 110257831 . T C 1614 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:362:329:106:22:54,52:28,35:26,17:-26:PASS:363,0,370 chr1 110257835 . C T 1700 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:349:316:104:24:54,50:29,33:25,17:-26.6:PASS:351,0,370:110257835 chr1 110257836 . T C 1722 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:372:359:105:22:51,54:27,36:24,18:-29.6:PASS:370,0,369:110257835 chr1 110295772 . T C 561 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:75:14:3:8,6:2,3:6,3:-10.9:PASS:110,0,137 chr1 110300441 . G A 420 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:99:66:31:8:22,9:15,7:7,2:-9.1:PASS:101,0,250 chr1 110466338 . C A 991 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:173:38:17:18,20:8,13:10,7:-17.7:PASS:210,0,174 chr1 110466466 . T C 340 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:26:13:16,10:6,2:10,8:-9.2:PASS:126,0,197 chr1 110466555 . G A 288 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:30:7:19,11:9,7:10,4:-12.3:PASS:133,0,213 chr1 110466709 . T C 1422 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:3:0,33:0,12:0,21:-42.2:PASS:370,99,0 chr1 110466810 . C A 288 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:100:13:3:6,7:3,3:3,4:-13.7:PASS:135,0,116 chr1 110590420 . T G 446 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:149:30:4:14,16:3,10:11,6:-14.8:PASS:183,0,165 chr1 110709719 . T C 437 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:7:0,17:0,9:0,8:-31.1:PASS:289,51,0 chr1 110709734 . G A 135 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:47:21:5:16,5:8,3:8,2:-7.1:PASS:82,0,209 chr1 110766454 . G A 298 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:117:27:17:14,13:2,3:12,10:-15:PASS:152,0,157 chr1 110882444 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:453:420:145:84:75,70:44,52:31,18:-23.5:PASS:370,0,370 chr1 110883569 . A T 416 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:241:239:62:12:29,33:18,17:11,16:-30.3:PASS:277,0,238 chr1 110924353 . G A 351 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:51:8:28,23:12,16:16,7:-11.9:PASS:201,0,270 chr1 111060300 . C T 368 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:49:12:25,23:15,14:10,9:-20.9:PASS:202,0,239 chr1 111060669 . T C 1496 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:11:0,55:0,31:0,24:-72.9:PASS:370,166,0 chr1 111061062 . T C 2838 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:17:0,82:0,50:0,32:-95.2:PASS:370,247,0 chr1 111778325 . C T 242 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:37:9:25,12:11,9:14,3:-7.6:PASS:123,0,268 chr1 111783996 . A G 1197 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:2:0,16:0,7:0,9:-29.9:PASS:282,48,0 chr1 111861841 . A G 1687 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:7:0,39:0,28:0,11:-40.7:PASS:370,117,0 chr1 111861974 . T C 1434 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:5:0,45:0,23:0,22:-68.4:PASS:370,135,0 chr1 111862952 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:364:364:122:25:0,122:0,36:0,86:-105.1:PASS:370,367,0 chr1 111957097 . C G 754 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:173:38:10:18,20:14,12:4,8:-23.4:PASS:208,0,191 chr1 111957688 . T C 739 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:298:265:99:7:55,44:26,19:29,25:-30.5:PASS:300,0,370 chr1 111957693 . A G 1499 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:86:15:49,37:22,17:27,20:-29.8:PASS:268,0,370 chr1 111962256 . G T 430 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:38:9:19,19:15,14:4,5:-16.2:PASS:191,0,204 chr1 111964262 . G A 576 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:187:154:39:9:20,18:7,9:13,9:-18.9:PASS:189,0,208 chr1 112042632 . A G 483 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:226:55:9:26,29:17,22:9,7:-18.8:PASS:266,0,225 chr1 112269872 . G A 1884 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:8:0,40:0,31:0,9:-33.6:PASS:370,120,0 chr1 112533728 . G A 71 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:32:5:1:3,2:1,1:2,1:-7.3:PASS:66,0,83 chr1 112539061 . A G 310 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:93:10:2:4,6:3,3:1,3:-14.3:PASS:130,0,95 chr1 112991698 . T C 419 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:162:34:5:15,19:5,6:10,13:-18.9:PASS:214,0,159 chr1 112999227 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:66:15:0,65:0,38:0,27:-81.1:PASS:370,196,0 chr1 113063125 . A G 341 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:163:46:6:24,22:8,6:16,16:-15.2:PASS:198,0,229 chr1 113098534 . C T 444 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:221:78:5:43,35:24,26:19,9:-15.4:PASS:256,0,350 chr1 113456546 . A T 2493 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:17:0,52:0,29:0,23:-70.6:PASS:370,156,0 chr1 113657092 . A C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:325:325:109:55:0,109:0,54:0,55:-152.2:PASS:370,328,0 chr1 114196495 . A G 1317 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:11:0,33:0,26:0,7:-28.4:PASS:370,99,0 chr1 114377568 . A G 1584 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:5:0,36:0,21:0,15:-50.6:PASS:370,108,0 chr1 114424601 . C T 2247 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:14:0,46:0,4:0,42:-22:PASS:370,138,0 chr1 114505000 . G A 996 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:98:23:1:7,16:4,10:3,6:-20.4:PASS:211,0,95 chr1 114515717 . G A 89 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:18:6:10,8:4,4:6,4:-13.4:PASS:120,0,147 chr1 114680310 . G A 557 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:165:45:11:18,27:12,16:6,11:-26.9:PASS:253,0,162 chr1 114948281 . A G 2106 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:6:0,68:0,27:0,41:-82.7:PASS:370,205,0 chr1 114973429 . T C 420 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:227:55:5:26,29:14,22:12,7:-16:PASS:263,0,232 chr1 115130353 . C T 888 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:235:66:10:30,36:21,22:9,14:-31.9:PASS:311,0,232 chr1 115164554 . C T 489 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:28:6:17,11:8,5:9,6:-14.6:PASS:134,0,206 chr1 115168600 . A T 601 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:306:291:81:9:40,41:11,6:29,35:-15.4:PASS:326,0,303 chr1 115319032 . T C 300 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:140:32:4:16,16:10,9:6,7:-19.8:PASS:175,0,176 chr1 115576023 . A G 1685 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:5:0,26:0,19:0,7:-29.5:PASS:370,78,0 chr1 115829313 . G A 1126 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:38:12:19,19:6,4:13,15:-14.7:PASS:192,0,199 chr1 116206423 . G A 302 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:67:26:39,28:17,15:22,13:-21.1:PASS:205,0,332 chr1 116243877 . G A 1189 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:192:67:7:38,29:28,23:10,6:-15.6:PASS:227,0,321 chr1 116310967 . T C 1442 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:9:0,48:0,35:0,13:-44.3:PASS:370,144,0 chr1 116534852 . C T 588 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:3:0,23:0,9:0,14:-33.8:PASS:358,69,0 chr1 116569530 . G C 893 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:39:10:24,15:14,7:10,8:-15.6:PASS:148,0,251 chr1 116666710 . C T 356 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:167:39:6:18,21:16,20:2,1:-7.3:PASS:201,0,183 chr1 116670774 . A G 429 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:75:42:22:5:14,8:10,8:4,0:2.8:PASS:76,0,190 chr1 116932921 . G A 448 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:176:40:8:18,22:11,10:7,12:-20.8:PASS:219,0,173 chr1 117122130 . T C 390 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:144:27:2:12,15:7,11:5,4:-14.7:PASS:180,0,150 chr1 117311147 . C A 491 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:137:31:14:15,16:11,12:4,4:-15.4:PASS:172,0,166 chr1 117487710 . A G 1156 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:78:78:27:2:0,27:0,10:0,17:-38.2:PASS:370,81,0:. chr1 117487711 . T A 1000 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:56:56:23:6:0,22:0,5:0,17:-24.3:PASS:352,66,0:. chr1 117529458 . G A 317 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:22:8:12,10:9,4:3,6:-10.9:PASS:125,0,169 chr1 117554421 . A G 971 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:228:69:18:30,39:18,20:12,19:-36.8:PASS:331,0,225 chr1 117559726 . A G 1752 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:5:0,32:0,27:0,5:-23:PASS:370,96,0 chr1 117560818 . A G 386 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:57:5:34,23:30,22:4,1:-5.9:PASS:170,0,308 chr1 117560929 . C A 502 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:133:67:12:43,24:26,13:17,11:-18.1:PASS:168,0,370 chr1 117617705 . A G 1089 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:211:51:9:23,28:12,20:11,8:-18.4:PASS:264,0,208 chr1 117618067 . C T 1815 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:308:275:86:16:44,42:27,18:17,24:-26.2:PASS:310,0,335 chr1 117656088 . A G 672 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:1:0,11:0,5:0,6:-24.8:PASS:217,33,0 chr1 117660754 . C T 1403 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:4:0,38:0,19:0,19:-61:PASS:370,114,0 chr1 118165691 . C T 350 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:27:9:17,10:7,6:10,4:-12.6:PASS:136,0,201 chr1 118441716 . T C 715 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:239:208:56:5:28,28:17,22:11,6:-14.4:PASS:243,0,242 chr1 118441722 . A G 692 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:247:215:56:9:28,28:16,21:12,7:-16.5:PASS:250,0,252 chr1 118565953 . G A 747 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:136:30:7:11,19:6,9:5,10:-24.2:PASS:222,0,133 chr1 118583408 . G A 1032 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:52:4:31,21:16,9:15,12:-16.9:PASS:171,0,290 chr1 118644430 . A G 2637 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:8:0,66:0,43:0,23:-71.1:PASS:370,199,0 chr1 118644524 . T A 1291 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:69:5:47,22:20,6:27,16:-8.7:PASS:141,0,370 chr1 119923724 . T C 519 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:60:13:3:8,5:5,4:3,1:-5.7:PASS:94,0,141 chr1 120057158 . C T 1333 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:69:11:41,28:16,14:25,14:-21:PASS:204,0,351 chr1 120057246 . C A 925 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:56:5:29,27:10,2:19,25:-7:PASS:228,0,260 chr1 120165826 . C T 93 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:75:10:3:5,5:0,2:5,3:-12.4:PASS:115,0,73 chr1 120166681 . G A 929 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:6:0,27:0,10:0,17:-37.7:PASS:370,81,0 chr1 120285546 . G A 2707 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:388:355:167:48:95,72:46,27:49,45:-27.5:PASS:370,0,370 chr1 120378678 . C T 2357 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:6:0,52:0,26:0,26:-78.1:PASS:370,156,0 chr1 120384205 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:394:394:132:10:0,132:0,56:0,76:-158.5:PASS:370,370,0 chr1 120387120 . G A 924 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:359:350:102:17:50,52:17,13:33,39:-24.8:PASS:370,0,356 chr1 120438827 . T C 687 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:243:238:63:15:30,33:7,9:23,24:-22:PASS:275,0,240 chr1 120572547 . T C 182 PASS SNVHPOL=2;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:31:3:22,9:16,8:6,1:-4.5:PASS:80,0,254 chr1 120572572 . C T 207 PASS SNVHPOL=3;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:102:69:31:1:20,11:16,10:4,1:-5:PASS:104,0,232 chr1 120611964 . G C 88 PASS SNVHPOL=3;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:32:5:3:3,2:2,1:1,1:-7.3:PASS:66,0,86 chr1 143767513 . A T 349 PASS SNVHPOL=5;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:83:50:122:11:91,31:47,11:44,20:-0.8:PASS:85,0,370 chr1 143767522 . A G 983 PASS SNVHPOL=3;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:280:247:101:27:58,43:23,20:35,23:-32.2:PASS:282,0,370 chr1 143767547 . G A 630 PASS SNVHPOL=4;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:104:11:67,37:31,14:36,23:-15.6:PASS:204,0,370 chr1 143767628 . C T 217 PASS SNVHPOL=2;MQ=48;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:70:3:48,22:18,4:30,18:-3.4:PASS:108,0,370 chr1 143767643 . T C 526 PASS SNVHPOL=5;MQ=47;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:56:10:35,21:19,4:16,17:-2.3:PASS:139,0,320 chr1 143767778 . T A 246 PASS SNVHPOL=2;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:16:56:6:45,11:27,2:18,9:4.9:PASS:51,0,370 chr1 143767833 . T C 102 PASS SNVHPOL=2;MQ=47;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:58:25:50:9:39,11:19,3:20,8:-1.7:PASS:59,0,370 chr1 144615138 . T G 55 PASS SNVHPOL=3;MQ=40;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:58:25:66:8:52,14:23,7:29,7:-4.8:PASS:60,0,370 chr1 144615237 . T G 152 PASS SNVHPOL=4;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:69:36:119:10:88,31:47,18:41,13:-6.1:PASS:71,0,370 chr1 144615246 . A AAG 1760 PASS CIGAR=1M2I;RU=AG;REFREP=2;IDREP=3;MQ=42;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:395:361:130:92,33:50,17:42,16:PASS:392,0,999 chr1 144615250 . G GAA 277 PASS CIGAR=1M2I;RU=A;REFREP=1;IDREP=3;MQ=42;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:247:204:132:97,27:49,16:48,11:PASS:244,0,999 chr1 144617251 . A G 147 PASS SNVHPOL=3;MQ=36;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:88:55:17:5:11,6:2,3:9,3:-5.5:PASS:89,0,153 chr1 144618144 . A G 3070 PASS SNVHPOL=3;MQ=45;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:936:936:312:41:0,312:0,173:0,139:-369.5:PASS:370,370,0 chr1 144618201 . T C 1788 PASS SNVHPOL=3;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:474:441:208:49:117,91:56,32:61,59:-29.1:PASS:370,0,370 chr1 144619354 . C T 450 PASS SNVHPOL=2;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:41:1:25,16:22,12:3,4:-14.9:PASS:142,0,257 chr1 144619903 . T A 143 PASS SNVHPOL=3;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:21:40:8:32,8:20,2:12,6:2.3:PASS:56,0,336 chr1 144852390 . C T 553 PASS SNVHPOL=3;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:114:48:16:30,18:15,8:15,10:-14.7:PASS:149,0,293 chr1 144852476 . T C 831 PASS SNVHPOL=3;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:56:8:38,18:12,6:26,12:-13.1:PASS:124,0,360 chr1 144854180 . T C 279 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:58:115:14:85,30:34,17:51,13:-0.1:PASS:92,0,370 chr1 144854528 . A G 577 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:73:10:43,30:28,16:15,14:-22.3:PASS:216,0,364 chr1 144854537 . T C 642 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:73:13:48,25:32,14:16,11:-16.3:PASS:164,0,370 chr1 144854597 . T C 1749 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:202:202:80:19:30,50:19,27:11,23:-46.6:PASS:370,0,199:144854597 chr1 144854598 . C T 943 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:287:254:85:14:46,39:27,22:19,17:-30.7:PASS:289,0,350:144854597 chr1 144855812 . T C 477 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:136:27:10:13,14:7,6:6,8:-16.6:PASS:171,0,160 chr1 144855866 . A G 403 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:34:4:19,15:3,5:16,10:-19.2:PASS:168,0,204 chr1 144856944 . T C 103 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:44:86:12:65,21:25,6:40,15:-6.2:PASS:78,0,370 chr1 144865850 . G T 1352 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:292:259:79:21:41,38:27,20:14,18:-31.3:PASS:294,0,332 chr1 144866643 . G A 642 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:150:45:15:23,22:12,14:11,8:-16.5:PASS:184,0,207 chr1 144866662 . T C 805 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:152:42:18:17,25:9,16:8,9:-20.5:PASS:230,0,149 chr1 144868170 . C T 984 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:296:263:92:16:49,43:15,11:34,32:-19.3:PASS:298,0,367 chr1 144871738 . C A 320 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:38:10:20,18:14,13:6,5:-13.9:PASS:161,0,211 chr1 144871755 . A T 501 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:187:154:41:10:20,21:11,15:9,6:-13.8:PASS:189,0,198 chr1 144871782 . A G 737 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:54:10:27,27:14,12:13,15:-24:PASS:228,0,237 chr1 144873887 . C T 1208 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:320:287:117:33:65,52:46,41:19,11:-17.7:PASS:322,0,370 chr1 144873962 . CT C 1755 PASS CIGAR=1M1D;RU=T;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:498:455:190:131,44:59,25:72,19:PASS:495,0,999 chr1 144874760 . T C 916 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:197:67:12:37,30:28,20:9,10:-22.6:PASS:232,0,314 chr1 144874815 . T C 191 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:72:60:15:43,17:27,8:16,9:-8:PASS:107,0,370 chr1 144877176 . C T 1550 PASS SNVHPOL=4;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:391:391:125:12:60,65:37,33:23,32:-48.5:PASS:370,0,370 chr1 144879264 . A G 2292 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:143:88:20:27,61:17,35:10,26:-53.5:PASS:370,0,140 chr1 144879375 . T C 1676 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:407:374:132:19:70,62:43,32:27,30:-43.6:PASS:370,0,370 chr1 144882581 . A G 1364 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:315:315:94:22:44,50:24,28:20,22:-39.5:PASS:370,0,312 chr1 144882823 . C T 1366 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:365:362:109:19:52,57:21,22:31,35:-35.8:PASS:370,0,362 chr1 144886197 . A T 1434 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:298:265:103:37:57,46:27,32:30,14:-14.8:PASS:300,0,370 chr1 144906508 . C T 468 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:59:59:24:1:4,20:2,10:2,10:-27.6:PASS:248,0,56 chr1 144912153 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:155:153:29:45,108:29,66:16,42:-83.2:PASS:370,0,151 chr1 144912233 . C T 1660 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:399:366:150:27:83,67:29,22:54,45:-33.1:PASS:370,0,370 chr1 144915561 . G A 2016 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:365:365:138:24:59,79:26,38:33,41:-65.1:PASS:370,0,362 chr1 144915623 . AG A 1166 PASS CIGAR=1M1D;RU=G;REFREP=1;IDREP=0;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:330:287:125:86,29:23,5:63,24:PASS:327,0,999 chr1 144916676 . C T 379 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:98:150:23:108,42:54,17:54,25:-7.8:PASS:133,0,370 chr1 144916748 . C G 1625 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:311:278:123:12:71,52:21,10:50,42:-14.9:PASS:313,0,370 chr1 144917546 . A G 1377 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:268:87:10:38,49:25,29:13,20:-40.2:PASS:370,0,265 chr1 144917827 . CA C 1424 PASS CIGAR=1M1D;RU=A;REFREP=2;IDREP=1;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:314:279:176:133,36:74,20:59,16:PASS:311,0,999 chr1 144917841 . T C 1924 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:452:419:153:19:82,71:45,37:37,34:-51.4:PASS:370,0,370 chr1 144918957 . T A 1473 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:423:390:123:18:62,61:22,20:40,41:-35:PASS:370,0,370 chr1 144922523 . C T 364 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:61:184:17:135,48:79,20:56,28:4.5:PASS:96,0,370 chr1 144922583 . G A 2020 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:563:563:182:20:89,93:33,31:56,62:-47:PASS:370,0,370 chr1 144923728 . GT G 1798 PASS CIGAR=1M1D;RU=T;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:778:744:206:141,61:79,28:62,33:PASS:775,0,999 chr1 144930596 . C A 1854 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:505:472:166:29:85,81:56,59:29,22:-32.5:PASS:370,0,370 chr1 144930940 . T C 1969 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:520:487:170:27:87,83:37,42:50,41:-55.2:PASS:370,0,370 chr1 144931330 . C T 2091 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:538:505:189:37:100,89:49,40:51,49:-54.4:PASS:370,0,370 chr1 144931392 . G A 1691 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:420:387:177:30:101,76:40,25:61,51:-29.4:PASS:370,0,370 chr1 144994658 . C A 1028 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:308:275:93:18:50,43:25,15:25,28:-22.9:PASS:310,0,370 chr1 145075854 . G C 307 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:57:12:2:7,5:1,1:6,4:-7.1:PASS:92,0,123 chr1 145103928 . G A 610 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:61:7:37,24:25,14:12,10:-18:PASS:159,0,330 chr1 145103947 . T C 617 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:71:7:44,27:20,15:24,12:-15.1:PASS:166,0,370 chr1 145109583 . C A 1477 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:382:349:127:17:68,59:39,27:29,32:-36.3:PASS:370,0,370 chr1 145109661 . G A 182 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:65:32:111:16:83,27:26,10:57,17:-4.4:PASS:67,0,370 chr1 145112414 . T C 173 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:82:49:105:6:79,26:45,16:34,10:-7:PASS:84,0,370 chr1 145112420 . C T 59 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:79:46:102:11:77,25:49,13:28,12:-3.1:PASS:81,0,370 chr1 145112428 . C T 131 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:104:13:79,25:44,16:35,9:-3.5:PASS:70,0,370 chr1 145112485 . C T 106 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:74:41:101:7:76,25:34,14:42,11:-3.3:PASS:76,0,370 chr1 145115810 . A G 2632 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:348:348:151:14:62,89:21,40:41,49:-74:PASS:370,0,345 chr1 145115820 . T C 470 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:141:16:102,39:36,21:66,18:-1.3:PASS:123,0,370 chr1 145293515 . A G 2480 PASS SNVHPOL=3;MQ=48;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:859:859:332:73:156,176:61,74:95,102:-113.8:PASS:370,0,370 chr1 145296372 . A G 3070 PASS SNVHPOL=2;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:976:943:341:34:171,170:94,87:77,83:-107.7:PASS:370,0,370 chr1 145303971 . A G 404 PASS SNVHPOL=2;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:61:6:41,20:21,11:20,9:-13.4:PASS:135,0,370 chr1 145368461 . A C 100 PASS SNVHPOL=3;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:24:153:18:116,37:96,32:20,5:-6:PASS:58,0,370 chr1 145532549 . T C 1053 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:6:0,26:0,20:0,6:-26.7:PASS:370,78,0 chr1 145536082 . G A 406 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:62:62:18:5:4,14:1,6:3,8:-21.6:PASS:195,0,59 chr1 145561594 . C T 449 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:201:49:9:22,27:13,17:9,10:-22.9:PASS:244,0,199 chr1 145562293 . G C 485 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:100:16:5:8,8:4,3:4,5:-14.6:PASS:135,0,135 chr1 145562881 . T C 110 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:61:29:6:1:4,2:1,1:3,1:-6.6:PASS:63,0,103 chr1 146409969 . A C 280 PASS SNVHPOL=2;MQ=16;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:79:79:10:2:3,7:2,4:1,3:-14.8:PASS:139,0,76 chr1 146672906 . C T 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:15:0,79:0,40:0,39:-113.7:PASS:370,238,0 chr1 146714392 . G T,C 999 PASS SNVHPOL=4;MQ=60;AC=2,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:10:0,21,0:0,9,0:0,12,0:-34.1:PASS:331,63,0,331,63,331 chr1 146736092 . C T 765 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:5:0,17:0,16:0,1:-9.4:PASS:278,51,0 chr1 146736137 . A G 206 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:24:13:8:10,3:8,2:2,1:-6.2:PASS:59,0,170 chr1 146740502 . C G 1260 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:5:0,28:0,7:0,21:-28.3:PASS:370,84,0 chr1 146751782 . A C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:10:0,65:0,42:0,23:-72:PASS:370,196,0 chr1 146767149 . G T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:879:879:293:22:0,293:0,173:0,120:-328.9:PASS:370,370,0 chr1 147119273 . G A 297 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:29:3:21,8:10,4:11,4:-11.2:PASS:99,0,249 chr1 147121977 . C T 770 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:4:0,14:0,4:0,10:-22.3:PASS:260,42,0 chr1 147124310 . T G 644 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:21:21:8:3:0,8:0,3:0,5:-18.6:PASS:179,24,0 chr1 148341812 . G A 223 PASS SNVHPOL=2;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:82:46:2:32,14:21,5:11,9:-5.6:PASS:117,0,313 chr1 148344660 . G C 240 PASS SNVHPOL=3;MQ=31;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:25:14:14,11:8,6:6,5:-14.6:PASS:139,0,168 chr1 150199123 . G T 694 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:177:48:5:19,28:4,5:15,23:-18.5:PASS:268,0,174 chr1 150234657 . G T 335 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:112:23:6:12,11:4,5:8,6:-16.1:PASS:147,0,156 chr1 150280550 . G A 287 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:62:12:6:7,5:2,2:5,3:-10.3:PASS:97,0,117 chr1 150300880 . C T 438 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:27:10:15,12:5,6:10,6:-14.9:PASS:147,0,186 chr1 150483355 . C T 882 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:304:271:92:20:49,43:39,34:10,9:-20.6:PASS:306,0,361 chr1 150484004 . G A 954 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:367:334:136:34:75,61:41,33:34,28:-40.9:PASS:369,0,370 chr1 150484987 . G A 828 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:320:287:97:21:51,46:41,37:10,9:-19.6:PASS:322,0,370 chr1 150526044 . G C 2978 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:15:0,61:0,11:0,50:-40:PASS:370,184,0 chr1 150526406 . C T 2444 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:256:256:86:43:0,86:0,84:0,2:-14.8:PASS:370,259,0 chr1 150531008 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:26:0,63:0,33:0,30:-89.9:PASS:370,190,0 chr1 150531078 . A G 655 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:211:56:33:28,28:7,14:21,14:-22.9:PASS:246,0,230 chr1 150531170 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:19:0,68:0,9:0,59:-33.2:PASS:370,205,0 chr1 150737220 . A G 361 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:43:3:27,16:5,5:22,11:-17.8:PASS:155,0,280 chr1 150771703 . T C 2207 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:6:0,32:0,13:0,19:-44.2:PASS:370,96,0 chr1 150808889 . C G 768 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:172:46:10:24,22:11,8:13,14:-19.2:PASS:206,0,232 chr1 150940625 . T G 668 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:7:0,18:0,10:0,8:-32.6:PASS:305,54,0 chr1 150955582 . A G 186 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:99:12:4:4,8:2,6:2,2:-12.6:PASS:139,0,97 chr1 150958836 . A G 288 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:81:18:4:11,7:8,4:3,3:-12.8:PASS:115,0,156 chr1 150970577 . G T 966 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:4:0,23:0,17:0,6:-27.2:PASS:358,69,0 chr1 150974971 . T A 356 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:39:9:20,19:10,11:10,8:-17.5:PASS:183,0,207 chr1 150975108 . T C 2574 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:2:0,52:0,16:0,36:-52.6:PASS:370,157,0 chr1 151006539 . C A 1922 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:7:0,40:0,23:0,17:-56.1:PASS:370,120,0 chr1 151015868 . G A 2039 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:14:0,59:0,31:0,28:-83.1:PASS:370,178,0 chr1 151062957 . G A 1254 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:9:0,36:0,18:0,18:-57.4:PASS:370,108,0 chr1 151108137 . T G 1333 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:8:0,22:0,12:0,10:-37.5:PASS:346,66,0 chr1 151209063 . C T 1250 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:201:46:5:21,25:16,21:5,4:-15.3:PASS:249,0,198 chr1 151239051 . T C 370 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:81:14:1:7,7:1,2:6,5:-11.3:PASS:116,0,106 chr1 151259043 . C T 285 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:35:6:20,15:14,14:6,1:-3.6:PASS:141,0,220 chr1 151259543 . G A 380 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:33:14:18,14:9,7:9,7:-17.2:PASS:155,0,199 chr1 151260673 . G A 300 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:22:3:13,9:10,3:3,6:-7.6:PASS:125,0,171 chr1 151288172 . G A 856 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:155:29:6:12,17:7,12:5,5:-17.6:PASS:204,0,152 chr1 151288391 . A G 2795 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:16:0,44:0,27:0,17:-55.4:PASS:370,132,0 chr1 151316161 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:17:0,88:0,49:0,39:-111.8:PASS:370,265,0 chr1 151733335 . T G 458 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:125:18:10:8,10:6,6:2,4:-18.1:PASS:162,0,127 chr1 151740666 . T C 2108 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:6:0,48:0,19:0,29:-60.3:PASS:370,144,0 chr1 151747970 . A G 390 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:98:26:4:15,11:7,2:8,9:-8.1:PASS:133,0,185 chr1 151820298 . G C 1163 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:7:0,23:0,13:0,10:-38.2:PASS:355,69,0 chr1 151820324 . T C 570 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:121:22:8:11,11:7,6:4,5:-17.4:PASS:156,0,152 chr1 151825991 . G T 467 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:139:23:7:10,13:6,5:4,8:-16:PASS:175,0,146 chr1 151867560 . G A 3005 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:8:0,68:0,34:0,34:-98.1:PASS:370,205,0 chr1 152079989 . T G 669 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:226:67:17:34,33:20,21:14,12:-22.5:PASS:260,0,276 chr1 152081921 . G C 826 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:298:106:12:57,49:24,21:33,28:-34.7:PASS:332,0,370 chr1 152084175 . T TTGCTGCTCGCGCCTCTCC 797 PASS CIGAR=1M18I;RU=TGCTGCTCGCGCCTCTCC;REFREP=2;IDREP=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:246:212:40:19,15:6,6:13,9:PASS:243,0,275 chr1 152085505 . A C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:289:289:97:10:0,97:0,31:0,66:-93.1:PASS:370,292,0 chr1 152127455 . T C 879 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:340:307:103:17:54,49:36,26:18,23:-35.7:PASS:341,0,370 chr1 152129065 . GTGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA G 2185 PASS CIGAR=1M36D;RU=.;REFREP=1;IDREP=0;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:767:724:116:61,47:40,35:21,12:PASS:764,0,877 chr1 152185750 . G A 420 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:24:34:11:28,6:6,3:22,3:-1.7:PASS:59,0,320 chr1 152185762 . C G 962 PASS SNVHPOL=2;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:11:0,31:0,9:0,22:-33.8:PASS:370,93,0 chr1 152185780 . G A 794 PASS SNVHPOL=4;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:12:0,25:0,5:0,20:-22.9:PASS:370,75,0 chr1 152185790 . T C 565 PASS SNVHPOL=4;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:51:51:18:12:0,18:0,1:0,17:-5.9:PASS:265,54,0:. chr1 152185796 . A G 616 PASS SNVHPOL=2;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:7:0,17:0,4:0,13:-20.8:PASS:292,51,0 chr1 152185815 . C A 313 PASS SNVHPOL=4;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:33:33:12:4:0,12:0,2:0,10:-12:PASS:216,36,0:. chr1 152185816 . C G 230 PASS SNVHPOL=4;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:27:27:10:6:0,10:0,0:0,10:0:PASS:163,30,0:. chr1 152185819 . A C 252 PASS SNVHPOL=5;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:6:0,9:0,0:0,9:0:PASS:153,27,0 chr1 152185823 . C T 181 PASS SNVHPOL=3;MQ=56;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:21:21:8:4:0,8:0,0:0,8:0:PASS:141,24,0 chr1 152186042 . A G 367 PASS SNVHPOL=4;MQ=39;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:23:23:7:2:1,6:1,0:0,6:0.7:PASS:98,0,20 chr1 152186222 . T C 102 PASS SNVHPOL=5;MQ=26;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:3:0,6:0,0:0,6:0:PASS:116,18,0 chr1 152186766 . G A 164 PASS SNVHPOL=2;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:55:55:9:4:3,6:1,4:2,2:-11.8:PASS:126,0,52 chr1 152188109 . T A 142 PASS SNVHPOL=2;MQ=28;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:76:33:11:22,11:21,4:1,7:-2.8:PASS:111,0,215 chr1 152188176 . G A 314 PASS SNVHPOL=2;MQ=31;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:144:44:22:24,20:17,14:7,6:-17.1:PASS:178,0,224 chr1 152189029 . A G 46 PASS SNVHPOL=4;MQ=19;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:15:5:9,6:0,0:9,6:0:PASS:66,0,102 chr1 152189055 . G C 291 PASS SNVHPOL=2;MQ=14;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:3:0,6:0,0:0,6:0:PASS:114,18,0 chr1 152190720 . C T 150 PASS SNVHPOL=2;MQ=22;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:2:0,6:0,6:0,0:0:PASS:118,18,0 chr1 152191709 . C G 1102 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:18:0,34:0,16:0,18:-52.8:PASS:370,102,0 chr1 152192114 . C T 899 PASS SNVHPOL=3;MQ=55;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:20:0,32:0,16:0,16:-52.3:PASS:370,96,0 chr1 152192293 . C T 1461 PASS SNVHPOL=3;MQ=56;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:165:165:56:15:0,56:0,28:0,28:-81.8:PASS:370,169,0 chr1 152192549 . T G 293 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:52:19:36:19:28,8:18,1:10,7:3.8:PASS:53,0,302 chr1 152192631 . C T 1405 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:23:0,39:0,17:0,22:-55.3:PASS:370,117,0 chr1 152192978 . T C 2020 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:15:0,37:0,19:0,18:-57.7:PASS:370,111,0 chr1 152193052 . A G 1743 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:14:0,38:0,20:0,18:-58.7:PASS:370,114,0 chr1 152193291 . G T 1085 PASS SNVHPOL=3;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:20:0,35:0,10:0,25:-37.3:PASS:370,105,0 chr1 152193544 . A G 2077 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:22:0,68:0,44:0,24:-73.5:PASS:370,205,0 chr1 152193547 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:26:0,65:0,39:0,26:-77.6:PASS:370,196,0 chr1 152193851 . C T 2635 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:250:250:84:10:0,84:0,23:0,61:-70.8:PASS:370,253,0 chr1 152195728 . ATT AT,A 3070 PASS CIGAR=1M1D1M,1M2D;RU=T,T;REFREP=11,11;IDREP=10,9;MQ=60;AC=2,0;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:110:110:47:1,42,1:0,14,0:1,28,1:PASS:744,114,0,683,109,656 chr1 152324002 . T C 244 PASS SNVHPOL=2;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:58:36:41,17:22,8:19,9:-12:PASS:121,0,370 chr1 152329369 . C G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:16:0,83:0,53:0,30:-88.5:PASS:370,250,0 chr1 152681680 . C CAGCTCTGGGGGCTGCTGT 844 PASS CIGAR=1M18I;RU=AGCTCTGGGGGCTGCTGT;REFREP=0;IDREP=1;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:95:90:26:7,7:1,2:6,5:PASS:132,0,92 chr1 152732436 . G C 1831 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:86:9:55,31:24,17:31,14:-17.1:PASS:191,0,370 chr1 152733301 . T A 1338 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:161:67:26:39,28:21,9:18,19:-12.1:PASS:196,0,331 chr1 152785170 . G A 239 PASS SNVHPOL=3;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:24:7:4:4,3:1,0:3,3:0.7:PASS:59,0,96 chr1 152944594 . C T 1211 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:13:0,27:0,9:0,18:-33:PASS:370,81,0 chr1 152975941 . C G 1385 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:11:0,38:0,14:0,24:-47.7:PASS:370,114,0 chr1 153004848 . T C 1139 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:8:0,25:0,20:0,5:-24.8:PASS:370,75,0 chr1 153004853 . C T 1144 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:7:0,27:0,24:0,3:-19:PASS:370,81,0 chr1 153277423 . C T 1002 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:44:15:24,20:15,13:9,7:-18.2:PASS:188,0,233 chr1 153314153 . C A 1305 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:7:0,20:0,10:0,10:-36:PASS:318,60,0 chr1 153315579 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:10:0,64:0,45:0,19:-61:PASS:370,193,0 chr1 153320372 . T G 1009 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:4:0,12:0,6:0,6:-25.8:PASS:231,36,0 chr1 153410822 . C A 1290 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:7:0,44:0,15:0,29:-49.6:PASS:370,132,0 chr1 153431406 . C G 1847 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:6:0,33:0,12:0,21:-42.1:PASS:370,99,0 chr1 153509892 . A G 338 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:93:21:7:12,9:5,4:7,5:-14.2:PASS:128,0,170 chr1 153517172 . T C 341 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:104:17:5:8,9:4,5:4,4:-13.3:PASS:139,0,137 chr1 153520203 . G A 249 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:48:32:7:23,9:13,7:10,2:-5.4:PASS:83,0,265 chr1 153520954 . C T 132 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:62:31:4:2:2,2:1,1:1,1:-7.1:PASS:65,0,70 chr1 153534027 . C T 652 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:18:3:10,8:5,6:5,2:-9.9:PASS:126,0,155 chr1 154108387 . G A 1856 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:9:0,46:0,15:0,31:-50.5:PASS:370,138,0 chr1 154245917 . T C 679 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:31:6:17,14:10,10:7,4:-12.4:PASS:151,0,184 chr1 154310048 . C G 2548 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:10:0,83:0,40:0,43:-115.7:PASS:370,250,0 chr1 154317153 . C T 1036 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:7:0,32:0,17:0,15:-50.2:PASS:370,96,0 chr1 154474131 . C G 1415 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:5:0,30:0,5:0,25:-25:PASS:370,90,0 chr1 154516571 . T C 951 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:1:0,21:0,11:0,10:-37.7:PASS:340,63,0 chr1 154516578 . G A 234 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:22:1:15,7:9,3:6,4:-11.1:PASS:115,0,208 chr1 154573967 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:11:0,77:0,45:0,32:-93.4:PASS:370,232,0 chr1 154574820 . T C 3035 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:12:0,70:0,34:0,36:-100.1:PASS:370,211,0 chr1 154575040 . C T 2282 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:15:0,47:0,16:0,31:-53.2:PASS:370,141,0 chr1 154744807 . C G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:322:322:108:18:0,108:0,62:0,46:-132.3:PASS:370,325,0 chr1 154744852 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:370:370:124:19:0,124:0,63:0,61:-171.7:PASS:370,370,0 chr1 154842123 . G C 604 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:197:51:23:25,26:13,13:12,13:-25.5:PASS:231,0,217 chr1 154919080 . C T 247 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:23:3:16,7:6,5:10,2:-6.4:PASS:102,0,202 chr1 154987526 . C T 317 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:88:55:19:4:13,6:6,5:7,1:-3.8:PASS:90,0,191 chr1 154988957 . A G 425 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:130:21:9:8,13:3,6:5,7:-19.7:PASS:178,0,127 chr1 155006091 . A G 568 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:141:29:10:14,15:5,10:9,5:-14.1:PASS:176,0,157 chr1 155006999 . C T 204 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:65:32:16:5:10,6:6,6:4,0:2.8:PASS:67,0,155 chr1 155019710 . A C 315 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:109:20:6:10,10:6,5:4,5:-16.5:PASS:144,0,142 chr1 155026871 . G T 259 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:50:18:22:6:18,4:10,1:8,3:-1.8:PASS:52,0,229 chr1 155026942 . A C 881 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:5:0,14:0,3:0,11:-17.9:PASS:251,42,0 chr1 155030557 . A C 1214 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:7:0,32:0,16:0,16:-51.7:PASS:370,96,0 chr1 155033918 . C T 30 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:61:29:6:2:4,2:3,1:1,1:-6.6:PASS:63,0,107 chr1 155106227 . A T 855 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:5:0,12:0,6:0,6:-24.6:PASS:217,36,0 chr1 155154528 . G A 155 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:74:41:15:4:11,4:4,1:7,3:-5:PASS:76,0,171 chr1 155162067 . C T 789 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:153:35:5:18,17:9,6:9,11:-17:PASS:188,0,184 chr1 155167841 . G A 285 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:107:74:23:14:14,9:7,5:7,4:-11.5:PASS:109,0,183 chr1 155408635 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:286:286:96:15:0,96:0,45:0,51:-128.3:PASS:370,289,0 chr1 155583937 . A G 128 PASS SNVHPOL=3;MQ=20;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:28:6:1:3,3:0,0:3,3:0:PASS:63,0,64 chr1 155658085 . T C 434 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:159:31:11:14,17:9,8:5,9:-19.9:PASS:199,0,157 chr1 155706776 . G A 622 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:258:73:5:37,36:12,14:25,22:-30.5:PASS:292,0,288 chr1 155735012 . T C 1275 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:418:417:124:15:60,64:12,15:48,49:-32.1:PASS:370,0,370 chr1 155837865 . G C 1711 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:8:0,37:0,24:0,13:-45.3:PASS:370,111,0 chr1 155838267 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:18:0,60:0,29:0,31:-87.3:PASS:370,181,0 chr1 155880573 . C G 2560 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:5:0,57:0,29:0,28:-84.7:PASS:370,172,0 chr1 155912486 . T C 1931 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:10:0,43:0,15:0,28:-50.5:PASS:370,129,0 chr1 156107534 . C T 536 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:110:35:72,38:24,17:48,21:-16.7:PASS:192,0,370 chr1 156146218 . C T 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:464:464:196:61:85,111:47,49:38,62:-72.9:PASS:370,0,370 chr1 156202173 . A G 428 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:78:16:4:9,7:5,5:4,2:-8.2:PASS:113,0,156 chr1 156206121 . G A 460 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:90:12:4:4,8:3,5:1,3:-16.6:PASS:152,0,87 chr1 156347834 . T A 399 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:4:0,11:0,5:0,6:-22.7:PASS:218,33,0 chr1 156351699 . G A 277 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:23:3:14,9:6,5:8,4:-12.6:PASS:130,0,193 chr1 156354367 . A G 761 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:5:0,16:0,4:0,12:-20.2:PASS:270,48,0 chr1 156446903 . T C 715 PASS SNVHPOL=8;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:8:0,13:0,9:0,4:-18.7:PASS:230,39,0 chr1 156450740 . G A 517 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:2:0,7:0,1:0,6:-9.4:PASS:160,21,0 chr1 156499969 . T C 1201 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:260:93:46:39,53:13,25:26,28:-46.3:PASS:370,0,257 chr1 156502870 . C T 395 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:111:27:2:10,17:1,3:9,14:-13.2:PASS:193,0,108 chr1 156526387 . C G 1834 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:309:276:100:17:54,46:20,23:34,23:-31.2:PASS:311,0,370 chr1 156526444 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:280:280:94:17:0,94:0,33:0,61:-95.8:PASS:370,283,0 chr1 156532977 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:650:650:217:38:0,217:0,97:0,120:-261.9:PASS:370,370,0 chr1 156536221 . G C 1684 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:6:0,29:0,20:0,9:-34.6:PASS:370,87,0 chr1 156536251 . T C 1592 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:3:0,31:0,18:0,13:-44.6:PASS:370,93,0 chr1 156551848 . A G 509 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:111:15:5:7,8:3,4:4,4:-16.1:PASS:146,0,123 chr1 156553231 . GC G 532 PASS CIGAR=1M1D;RU=C;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:86:86:19:7,11:2,9:5,2:PASS:189,0,83 chr1 156556321 . G A 274 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:17:5:0:3,2:3,0:0,2:2.1:PASS:52,0,65 chr1 156563726 . A C 770 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:160:32:8:14,18:11,9:3,9:-20.4:PASS:206,0,157 chr1 156563813 . G A 633 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:152:28:7:13,15:6,4:7,11:-15.3:PASS:188,0,156 chr1 156563852 . C T 631 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:135:24:4:10,14:4,4:6,10:-15.3:PASS:183,0,132 chr1 156565049 . A AAC 3070 PASS CIGAR=1M2I;RU=AC;REFREP=0;IDREP=1;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:138:138:73:3,63:1,42:2,21:PASS:999,141,0 chr1 156565170 . T G 684 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:240:66:12:31,35:18,15:13,20:-27.1:PASS:287,0,237 chr1 156565218 . C T 618 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:168:58:19:22,36:11,14:11,22:-29.6:PASS:324,0,165 chr1 156568252 . A G 305 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:40:7:21,19:7,6:14,13:-17.5:PASS:187,0,214 chr1 156622252 . G A 244 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:25:6:14,11:10,2:4,9:-7:PASS:138,0,176 chr1 156627996 . T C 265 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:76:12:5:7,5:6,2:1,3:-9.8:PASS:111,0,115 chr1 156639636 . G A 195 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:58:20:12:14,6:9,4:5,2:-10.5:PASS:93,0,186 chr1 156639753 . G A 594 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:26:12:16,10:10,3:6,7:-8.9:PASS:123,0,191 chr1 156640156 . G A 633 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:32:16:20,12:8,9:12,3:-9:PASS:135,0,226 chr1 156640308 . C T 364 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:140:25:12:12,13:4,6:8,7:-19.9:PASS:175,0,149 chr1 156640503 . C T 421 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:183:44:14:21,23:12,14:9,9:-20.7:PASS:218,0,196 chr1 156641537 . C T 745 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:278:245:73:10:38,35:25,17:13,18:-27:PASS:280,0,309 chr1 156704234 . G A 127 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:45:6:4:3,3:1,1:2,2:-8:PASS:80,0,89 chr1 156705593 . G C 1012 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:2:0,16:0,10:0,6:-23.1:PASS:257,48,0 chr1 156713512 . C T 943 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:6:0,16:0,8:0,8:-30.7:PASS:275,48,0 chr1 156784982 . T C 512 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:3:0,7:0,2:0,5:-14.3:PASS:164,21,0 chr1 156810679 . C A 283 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:66:14:4:8,6:8,5:0,1:-8.7:PASS:101,0,98 chr1 156814027 . G A 149 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:24:14:1:11,3:6,2:5,1:-5.2:PASS:59,0,180 chr1 156848995 . C T 978 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:85:12:51,34:29,18:22,16:-22.6:PASS:204,0,370 chr1 156877457 . T C 1170 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:5:0,24:0,15:0,9:-34.8:PASS:366,72,0 chr1 157069154 . A G 627 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:112:25:12:12,12:6,2:6,10:-6.7:PASS:147,0,145 chr1 157095470 . A G 1705 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:165:165:56:9:0,56:0,30:0,26:-78.1:PASS:370,169,0 chr1 157508882 . C T 941 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:3:0,20:0,18:0,2:-15.3:PASS:317,60,0 chr1 157509025 . C T 1091 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:2:0,18:0,4:0,14:-20.1:PASS:297,54,0 chr1 157514097 . A G 2118 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:8:0,36:0,24:0,12:-42.8:PASS:370,108,0 chr1 157557701 . G A 1040 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:203:54:4:27,27:12,16:15,11:-22.1:PASS:238,0,234 chr1 157668390 . T C 571 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:150:44:7:17,27:8,11:9,16:-27.3:PASS:271,0,147 chr1 157771880 . C T 1385 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:12:0,21:0,12:0,9:-33.4:PASS:333,63,0 chr1 158057633 . C G 481 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:3:0,17:0,13:0,4:-22:PASS:294,51,0 chr1 158151347 . C T 170 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:24:8:14,10:9,7:5,3:-13.5:PASS:138,0,181 chr1 158368541 . A G 778 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:272:239:69:8:35,34:15,23:20,11:-17.2:PASS:273,0,288 chr1 158368846 . T C 796 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:336:320:94:12:46,48:13,20:33,28:-39.6:PASS:355,0,333 chr1 158368964 . C T 759 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:296:296:85:8:40,45:21,23:19,22:-40:PASS:353,0,293 chr1 158368974 . A G 879 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:238:82:7:34,48:15,25:19,23:-43.2:PASS:370,0,235 chr1 158369064 . A G 698 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:209:73:17:29,44:18,16:11,28:-30.5:PASS:370,0,206 chr1 158390252 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:395:364:114:26:57,57:31,31:26,26:-43:PASS:370,0,370 chr1 158390501 . G A 2924 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:337:304:103:20:54,49:23,15:31,34:-24:PASS:339,0,370 chr1 158450238 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:333:300:120:19:67,53:31,21:36,32:-27.6:PASS:335,0,370 chr1 158450314 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:433:433:145:18:0,145:0,73:0,72:-199.5:PASS:370,370,0 chr1 158450382 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:385:385:129:20:0,129:0,73:0,56:-159.6:PASS:370,370,0 chr1 158517142 . C T 369 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:270:237:73:4:38,35:23,19:15,16:-30.5:PASS:272,0,300 chr1 158517353 . G A 410 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:294:273:76:8:38,38:19,27:19,11:-20.1:PASS:308,0,291 chr1 158533140 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:12:0,78:0,32:0,46:-95.7:PASS:370,235,0 chr1 158533224 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:14:0,85:0,36:0,49:-106.2:PASS:370,256,0 chr1 158549264 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:313:313:105:17:0,105:0,46:0,59:-132.2:PASS:370,316,0 chr1 158549420 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:280:280:94:18:0,94:0,54:0,40:-116.5:PASS:370,283,0 chr1 158549492 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:286:286:96:32:0,96:0,52:0,44:-123.2:PASS:370,289,0 chr1 158549511 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:30:0,89:0,48:0,41:-115.5:PASS:370,268,0 chr1 158577109 . A C 347 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:72:9:44,28:14,8:30,20:-17.1:PASS:201,0,370 chr1 158582646 . T C 1835 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:5:0,44:0,17:0,27:-55.4:PASS:370,132,0 chr1 158584091 . A G 1326 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:16:0,24:0,12:0,12:-41.9:PASS:368,72,0 chr1 158592935 . G A 542 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:23:0:13,10:4,3:9,7:-14.2:PASS:136,0,171 chr1 158597507 . G C 623 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:33:2:21,12:3,2:18,10:-10.8:PASS:130,0,233 chr1 158606449 . G T 612 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:30:7:17,13:9,12:8,1:-1.1:PASS:125,0,185 chr1 158607935 . T G 419 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:212:53:8:24,29:9,15:15,14:-27.9:PASS:267,0,209 chr1 158612236 . A G 1032 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:7:0,25:0,16:0,9:-34.1:PASS:370,75,0 chr1 158619728 . A C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:576:576:197:28:0,196:0,86:0,110:-238:PASS:370,370,0 chr1 158626378 . C T 182 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:24:5:17,7:6,3:11,4:-10.5:PASS:103,0,213 chr1 158631171 . A C 429 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:173:36:7:16,20:7,7:9,13:-18.1:PASS:212,0,172 chr1 158647495 . A T 1768 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:5:0,27:0,19:0,8:-32:PASS:370,81,0 chr1 158647522 . A G 1014 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:33:7:18,15:9,10:9,5:-14.1:PASS:166,0,195 chr1 158648205 . T C 1095 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:342:342:106:10:49,56:44,48:5,8:-21.8:PASS:370,0,339 chr1 158655036 . G A 2659 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:21:0,47:0,27:0,20:-63.5:PASS:370,141,0 chr1 158687163 . G A 730 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:226:59:10:29,30:15,19:14,11:-23.1:PASS:261,0,242 chr1 158687224 . G A 717 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:278:263:69:8:33,36:21,18:12,18:-31.7:PASS:298,0,275 chr1 158735595 . C T 1457 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:5:0,33:0,18:0,15:-49.5:PASS:370,99,0 chr1 158735691 . T C 1623 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:6:0,43:0,24:0,19:-62.2:PASS:370,129,0 chr1 158735740 . A G 1662 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:8:0,40:0,25:0,15:-49.6:PASS:370,120,0 chr1 158735892 . A G 2472 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:7:0,62:0,37:0,25:-76.4:PASS:370,187,0 chr1 158736215 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:143:143:52:19:0,51:0,35:0,16:-52.2:PASS:370,153,0 chr1 158736445 . C T 1389 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:14:0,64:0,28:0,36:-83.7:PASS:370,193,0 chr1 158813819 . A G 2036 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:18:0,53:0,34:0,19:-59.2:PASS:370,160,0 chr1 158988270 . T C 1018 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:385:352:110:9:56,54:33,36:23,18:-30.8:PASS:370,0,370 chr1 158990247 . A G 493 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:119:61:3:40,21:17,11:23,10:-14.9:PASS:153,0,366 chr1 159002377 . C A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:12:0,65:0,44:0,21:-65.6:PASS:370,196,0 chr1 159002389 . T A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:12:0,65:0,42:0,23:-70.1:PASS:370,196,0 chr1 159169641 . T C 696 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:6:0,25:0,7:0,18:-28.3:PASS:370,75,0 chr1 159175354 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:657:624:228:65:118,110:62,57:56,53:-73.8:PASS:370,0,370 chr1 159409734 . G T 3048 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:54:7:0,54:0,36:0,18:-58.9:PASS:370,163,0 chr1 159409857 . A G 740 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:301:272:75:11:37,38:21,21:16,17:-33.5:PASS:307,0,301 chr1 159410340 . T A 1484 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:59:23:33,26:19,12:14,14:-19.2:PASS:210,0,288 chr1 159505297 . C T 1764 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:11:0,78:0,60:0,18:-58.5:PASS:370,235,0 chr1 159558258 . A G 2910 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:22:0,76:0,29:0,47:-87.2:PASS:370,229,0 chr1 159778910 . G A 244 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:76:21:11:14,7:8,3:6,4:-11.4:PASS:110,0,188 chr1 159778983 . T C 295 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:119:21:8:10,11:5,3:5,8:-13.9:PASS:154,0,136 chr1 159785413 . C T 381 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:74:74:24:2:6,18:4,6:2,12:-20:PASS:233,0,71 chr1 159785425 . A G 345 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:81:24:4:6,18:3,4:3,14:-17.4:PASS:232,0,78 chr1 159799917 . T C 227 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:19:7:11,8:5,2:6,6:-10.5:PASS:130,0,160 chr1 159799922 . G T 154 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:61:21:5:14,7:8,1:6,6:-3.2:PASS:96,0,186 chr1 159827747 . G A 411 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:170:36:6:17,19:9,11:8,8:-20.9:PASS:205,0,181 chr1 159898100 . A G 153 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:29:28:5:2:1,4:1,4:0,0:0:PASS:75,0,26 chr1 159923111 . T G 1806 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:4:0,33:0,20:0,13:-45.4:PASS:370,99,0 chr1 159923904 . A C 309 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:55:53:5:0:2,3:2,2:0,1:-8.7:PASS:92,0,52 chr1 160000380 . T C 421 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:151:40:10:15,25:8,16:7,9:-24.6:PASS:269,0,148 chr1 160001524 . G A 330 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:204:54:11:27,27:5,3:22,24:-11.9:PASS:239,0,233 chr1 160105250 . C T 292 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:51:13:28,23:14,11:14,12:-21.9:PASS:200,0,254 chr1 160124875 . G A 1469 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:16:0,30:0,15:0,15:-48.4:PASS:370,90,0 chr1 160134205 . C T 1131 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:150:44:7:24,20:4,8:20,12:-20.7:PASS:184,0,225 chr1 160136350 . G A 1987 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:14:0,31:0,21:0,10:-35.9:PASS:370,93,0 chr1 160141196 . C T 2228 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:11:0,40:0,18:0,22:-58:PASS:370,120,0 chr1 160303416 . G A 959 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:3:0,26:0,10:0,16:-37.1:PASS:370,78,0 chr1 160393905 . A G 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:608:608:203:78:0,203:0,93:0,110:-253.6:PASS:370,370,0 chr1 160394937 . A C 580 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:110:27:4:15,12:11,10:4,2:-11.2:PASS:145,0,187 chr1 160395003 . G A 811 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:33:4:18,15:9,13:9,2:-6.4:PASS:154,0,199 chr1 160523243 . C T 328 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:138:28:10:12,16:8,10:4,6:-20.7:PASS:197,0,135 chr1 160616703 . G T 231 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:115:17:3:7,10:4,7:3,3:-13.7:PASS:150,0,130 chr1 160650913 . A G 1953 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:10:0,43:0,29:0,14:-48.7:PASS:370,129,0 chr1 160650938 . C T 360 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:140:48:10:29,19:18,12:11,7:-17.9:PASS:175,0,274 chr1 160654786 . G A 988 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:277:86:12:39,47:21,22:18,25:-38:PASS:367,0,274 chr1 160793442 . A G 341 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:170:42:6:21,21:12,13:9,8:-19.4:PASS:205,0,203 chr1 160793560 . A G 332 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:47:5:27,20:10,6:17,14:-15.6:PASS:183,0,258 chr1 160851826 . A T 2065 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:18:0,35:0,18:0,17:-54.6:PASS:370,105,0 chr1 160851894 . G A 2230 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:16:0,48:0,20:0,28:-64.8:PASS:370,144,0 chr1 160920966 . C T 1614 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:17:0,53:0,26:0,27:-78.8:PASS:370,160,0 chr1 161021472 . C T 150 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:23:4:14,9:4,3:10,6:-13.7:PASS:129,0,171 chr1 161479745 . A G 1892 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:383:350:111:17:56,55:20,19:36,36:-33:PASS:370,0,370 chr1 161487863 . C T 408 PASS SNVHPOL=4;MQ=47;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:171:44:6:23,21:13,7:10,14:-15:PASS:205,0,225 chr1 161495040 . C T 188 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:19:9:10,9:6,4:4,5:-14.7:PASS:136,0,148 chr1 161495477 . A T 842 PASS SNVHPOL=3;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:133:31:6:17,14:4,7:13,7:-16.1:PASS:167,0,194 chr1 161495885 . T C 1397 PASS SNVHPOL=4;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:97:45:10:29,16:12,5:17,11:-9.2:PASS:132,0,288 chr1 161496134 . C G 310 PASS SNVHPOL=4;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:183:46:5:23,23:10,9:13,14:-22.1:PASS:218,0,212 chr1 161496178 . G A 241 PASS SNVHPOL=3;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:47:4:26,21:11,7:15,14:-16.4:PASS:186,0,243 chr1 161514542 . A C 628 PASS SNVHPOL=5;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:193:43:12:20,23:16,14:4,9:-25.1:PASS:228,0,198 chr1 161518214 . T C 152 PASS SNVHPOL=3;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:73:40:47:9:35,12:27,11:8,1:-2.9:PASS:74,0,342 chr1 161518314 . C T 171 PASS SNVHPOL=2;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:72:14:55,17:30,9:25,8:-7.6:PASS:70,0,370 chr1 161559571 . C T 224 PASS SNVHPOL=2;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:122:48:12:30,18:11,7:19,11:-16.5:PASS:157,0,285 chr1 161565352 . C G 258 PASS SNVHPOL=2;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:44:7:23,21:14,11:9,10:-22.1:PASS:201,0,220 chr1 161599693 . T C 1186 PASS SNVHPOL=3;MQ=42;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:1:0,19:0,14:0,5:-21:PASS:292,57,0 chr1 161642985 . G A 1050 PASS SNVHPOL=3;MQ=48;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:165:51:8:20,31:7,11:13,20:-27.9:PASS:298,0,162 chr1 161681780 . A G 427 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:114:25:7:10,15:8,8:2,7:-19.8:PASS:190,0,111 chr1 161683136 . G A 231 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:139:32:2:17,15:5,8:12,7:-16.3:PASS:173,0,189 chr1 161695639 . G T 616 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:7:0,12:0,11:0,1:-9.4:PASS:207,36,0 chr1 161697072 . G C 277 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:96:95:20:2:9,11:9,10:0,1:-7.8:PASS:137,0,93 chr1 161721707 . C T 1356 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:15:0,80:0,28:0,52:-84.4:PASS:370,241,0 chr1 161721771 . C G 502 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:232:74:14:40,34:11,7:29,27:-17.2:PASS:267,0,320 chr1 161751741 . A G 825 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:31:6:16,15:6,4:10,11:-14.1:PASS:171,0,184 chr1 161928327 . A G 989 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:158:50:4:28,22:15,16:13,6:-12.2:PASS:193,0,260 chr1 161967681 . A G 1679 PASS SNVHPOL=8;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:7:0,34:0,19:0,15:-50.3:PASS:370,102,0 chr1 161976234 . A G 1860 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:227:57:6:26,31:15,14:11,17:-28.2:PASS:279,0,224 chr1 162344102 . C T 532 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:118:24:10:12,12:5,4:7,8:-14.7:PASS:152,0,151 chr1 162344390 . A G 1328 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:1:0,28:0,6:0,22:-27.7:PASS:370,84,0 chr1 162345091 . G A 1045 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:3:0,14:0,7:0,7:-29.4:PASS:257,42,0 chr1 165173216 . A G 1946 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:5:0,45:0,22:0,23:-68.7:PASS:370,135,0 chr1 165218679 . C T 277 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:17:4:9,8:7,4:2,4:-14.4:PASS:129,0,138 chr1 165377552 . G A 461 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:48:3:31,17:7,4:24,13:-12.9:PASS:143,0,301 chr1 165398115 . T C 302 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:2:0,10:0,6:0,4:-22:PASS:212,30,0 chr1 165652273 . A G 2128 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:2:0,30:0,13:0,17:-46:PASS:370,90,0 chr1 165667781 . T G 273 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:74:68:7:4:3,4:1,1:2,3:-8:PASS:104,0,71 chr1 165865478 . G A 261 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:163:32:6:15,17:9,8:6,9:-20.5:PASS:198,0,173 chr1 166905927 . C T 230 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:22:9:13,9:7,4:6,5:-12.9:PASS:130,0,175 chr1 167095163 . G C 946 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:7:0,29:0,10:0,19:-36.8:PASS:370,87,0 chr1 167095765 . G A 269 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:85:52:16:4:11,5:5,1:6,4:-5.2:PASS:87,0,164 chr1 167095881 . G A 415 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:113:22:9:12,10:9,6:3,4:-16.5:PASS:147,0,154 chr1 167097567 . G A 375 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:75:13:45,30:9,8:36,22:-19.9:PASS:211,0,370 chr1 167097739 . C A 1427 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:80:80:41:15:1,40:0,10:1,30:-37.1:PASS:370,83,0 chr1 167817639 . A G 2372 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:3:0,52:0,20:0,32:-63.4:PASS:370,156,0 chr1 167825485 . T C 2540 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:9:0,46:0,28:0,18:-58.3:PASS:370,138,0 chr1 167849414 . A G 309 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:107:74:16:2:10,6:6,3:4,3:-10.4:PASS:108,0,153 chr1 167865871 . G A 453 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:186:47:5:20,27:10,14:10,13:-29:PASS:264,0,183 chr1 167893759 . G A 967 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:133:31:4:16,15:10,6:6,9:-14.7:PASS:168,0,184 chr1 168013850 . T C 204 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:144:35:8:18,17:14,7:4,10:-13.8:PASS:179,0,195 chr1 168059866 . A G 328 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:26:18:3:1:1,2:1,0:0,2:0.7:PASS:53,0,23 chr1 169391154 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:379:379:127:8:0,127:0,72:0,55:-155.5:PASS:370,370,0 chr1 169519049 . T C 2886 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:165:165:56:4:0,56:0,47:0,9:-34.3:PASS:370,169,0 chr1 169521849 . T C 552 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:305:272:83:13:42,41:23,24:19,17:-30.8:PASS:307,0,325 chr1 169580885 . C T 1081 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:292:259:115:28:67,48:21,17:46,31:-28:PASS:293,0,370 chr1 169673838 . G A 442 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:167:37:3:18,19:7,7:11,12:-19.3:PASS:202,0,192 chr1 169676486 . A G 864 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:157:33:9:16,17:10,11:6,6:-18.4:PASS:192,0,169 chr1 169677709 . A G 1877 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:384:372:110:26:54,56:33,31:21,25:-44.9:PASS:370,0,370 chr1 169694918 . A G 633 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:343:310:118:10:64,54:52,44:12,10:-21.9:PASS:345,0,370 chr1 169696946 . G A 351 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:183:41:9:19,22:7,11:12,11:-23.3:PASS:220,0,183 chr1 169773317 . G A 938 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:157:33:2:16,17:6,4:10,13:-15.3:PASS:191,0,176 chr1 169823660 . C T 1854 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:328:295:90:22:46,44:22,24:24,20:-34.1:PASS:330,0,346 chr1 169823718 . T C 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:18:0,80:0,29:0,51:-88.3:PASS:370,241,0 chr1 169825081 . C T 332 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:136:26:7:10,16:3,4:7,12:-13.9:PASS:193,0,133 chr1 170135669 . C T 829 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:43:7:25,18:20,14:5,4:-14.1:PASS:168,0,252 chr1 170135760 . T C 1075 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:60:14:32,28:21,16:11,12:-26.5:PASS:235,0,271 chr1 170135765 . T C 1043 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:216:63:10:33,30:20,17:13,13:-26.9:PASS:251,0,276 chr1 170501385 . A C 655 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:67:34:18:4:13,5:6,4:7,1:-0.4:PASS:68,0,186 chr1 170521376 . G A 2848 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:286:253:82:12:44,38:23,22:21,16:-27.2:PASS:288,0,344 chr1 170967395 . G A 1295 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:235:67:10:34,33:22,18:12,15:-30.6:PASS:269,0,284 chr1 170985471 . G T 340 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:50:1:29,21:10,5:19,16:-13.9:PASS:187,0,273 chr1 171168584 . C T 426 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:150:117:34:8:20,14:11,9:9,5:-13.1:PASS:152,0,220:171168584 chr1 171168585 . A G 428 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:167:134:37:5:21,16:11,10:10,6:-15.3:PASS:169,0,219:171168584 chr1 171227216 . T C 417 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:1:0,12:0,9:0,3:-16.7:PASS:216,36,0 chr1 171250044 . C T 331 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:168:55:6:31,24:17,14:14,10:-20:PASS:202,0,277 chr1 171251196 . A G 1312 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:6:0,71:0,43:0,28:-85.4:PASS:370,214,0 chr1 171251268 . T C 470 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:246:213:77:10:43,34:34,14:9,20:-14:PASS:248,0,354 chr1 171251407 . A G 441 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:68:16:37,31:14,10:23,21:-20.6:PASS:246,0,308 chr1 171252287 . A G 479 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:206:51:11:24,26:7,13:17,13:-24.8:PASS:241,0,215 chr1 171303690 . T C 715 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:322:289:96:11:50,46:30,28:20,18:-31.3:PASS:324,0,370 chr1 171509327 . G A 1499 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:177:41:11:20,21:12,15:8,6:-17.3:PASS:212,0,198 chr1 171511039 . C G 2856 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:329:314:94:18:46,48:20,21:26,27:-36.2:PASS:349,0,326 chr1 171514731 . C G 2418 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:273:242:71:13:36,35:18,20:18,15:-28.5:PASS:277,0,273 chr1 171556165 . G C 1188 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:30:10:15,15:10,13:5,2:-10.5:PASS:160,0,174 chr1 171751236 . T C 702 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:49:16:26,23:9,13:17,10:-17.9:PASS:211,0,246 chr1 171753241 . G A 205 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:39:10:23,16:9,5:14,11:-14.8:PASS:163,0,239 chr1 171956803 . C T 1555 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:5:0,47:0,35:0,12:-42.2:PASS:370,141,0 chr1 172356437 . A G 1158 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:6:0,18:0,8:0,10:-31.8:PASS:298,54,0 chr1 172410967 . G A 557 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:116:31:8:12,19:11,11:1,8:-24.5:PASS:218,0,113 chr1 172411496 . A G 2497 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:204:68:23:27,41:10,22:17,19:-36:PASS:358,0,201 chr1 172422206 . C A 227 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:14:8:7,7:3,5:4,2:-9.2:PASS:120,0,128 chr1 172437592 . G A 1013 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:4:0,30:0,23:0,7:-28.6:PASS:370,90,0 chr1 172501856 . T C 452 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:59:12:35,24:24,9:11,15:-12.2:PASS:192,0,319 chr1 172502340 . T C 1506 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:163:42:16:20,22:19,21:1,1:-8:PASS:202,0,162 chr1 172502479 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:336:303:106:27:56,50:44,40:12,10:-20.6:PASS:338,0,370 chr1 173516871 . G C 417 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:37:3:24,13:10,5:14,8:-14.6:PASS:129,0,259 chr1 173516903 . A G 398 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:39:3:26,13:12,5:14,8:-13.2:PASS:134,0,283 chr1 173552703 . G A 410 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:49:8:26,23:14,11:12,12:-22.5:PASS:208,0,246 chr1 173596257 . A T 263 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:39:8:20,19:5,8:15,11:-18.4:PASS:163,0,206 chr1 173596273 . A G 218 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:33:8:19,14:5,6:14,8:-13.9:PASS:130,0,207 chr1 173878832 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:316:316:106:24:0,106:0,20:0,86:-61.6:PASS:370,319,0 chr1 173878862 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:283:283:95:21:0,95:0,17:0,78:-55.6:PASS:370,286,0 chr1 174219724 . A G 379 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:95:10:61,34:25,12:36,22:-16.4:PASS:188,0,370 chr1 175046789 . A G 853 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:124:20:2:7,13:3,3:4,10:-13.6:PASS:176,0,121 chr1 175049379 . G A 259 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:105:31:6:19,12:15,7:4,5:-14:PASS:140,0,211 chr1 175087884 . C T 212 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:169:140:30:7:15,15:6,8:9,7:-19:PASS:175,0,169:175087884 chr1 175087885 . A G 289 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:155:155:33:4:14,19:4,8:10,11:-22.3:PASS:207,0,152:175087884 chr1 175092674 . C T 1846 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:20:0,35:0,12:0,23:-41.2:PASS:370,105,0 chr1 175092707 . C T 853 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:32:12:23,9:6,3:17,6:-10.5:PASS:103,0,259 chr1 175113578 . T C 1579 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:3:0,22:0,12:0,10:-37.1:PASS:348,66,0 chr1 175129924 . CCTTCTTCTT C 2380 PASS CIGAR=1M9D;RU=CTT;REFREP=10;IDREP=7;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:201:176:66:36,15:16,12:20,3:PASS:198,0,573 chr1 175129946 . C T 392 PASS SNVHPOL=5;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:89:89:42:14:13,29:10,15:3,14:-31.7:PASS:292,0,86 chr1 175129955 . G T 1405 PASS SNVHPOL=5;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:93:44:12:29,15:14,12:15,3:-6.5:PASS:128,0,266 chr1 175299301 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:460:460:157:16:73,84:25,39:48,45:-66.1:PASS:370,0,370 chr1 175324651 . A G 1259 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:5:0,19:0,10:0,9:-34.5:PASS:310,57,0 chr1 175324711 . G A 304 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:141:26:2:12,14:7,8:5,6:-18.2:PASS:176,0,147 chr1 175334309 . G A 500 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:191:53:8:22,31:6,6:16,25:-16.9:PASS:287,0,188 chr1 175335234 . C T 1162 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:182:50:11:26,24:9,10:17,14:-23.5:PASS:216,0,244 chr1 175355391 . A G 2629 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:442:409:149:21:79,70:28,21:51,49:-33.2:PASS:370,0,370 chr1 176863867 . T C 938 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:9:0,15:0,7:0,8:-30.1:PASS:264,45,0 chr1 177247854 . C G 181 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:76:21:4:14,7:7,5:7,2:-9.1:PASS:111,0,183 chr1 177902753 . G C 800 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:50:6:30,20:7,4:23,16:-13.8:PASS:176,0,287 chr1 177908852 . C T 415 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:211:53:3:26,27:15,15:11,12:-26.4:PASS:246,0,231 chr1 177929987 . T C 1578 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:8:0,28:0,20:0,8:-30.8:PASS:370,84,0 chr1 177935050 . T A 613 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:22:14:14,8:6,5:8,3:-10.3:PASS:115,0,191 chr1 179112145 . C G 276 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:50:3:28,22:14,11:14,11:-23.1:PASS:204,0,259 chr1 179399715 . G A 464 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:158:51:4:19,32:5,12:14,20:-30.6:PASS:306,0,155 chr1 179520422 . T C 768 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:442:409:149:27:78,70:52,56:26,14:-20.7:PASS:370,0,370 chr1 179533915 . G A 1952 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:932:899:330:36:170,160:63,41:107,119:-45.6:PASS:370,0,370 chr1 179604864 . C T 265 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:49:3:31,18:20,11:11,7:-16.5:PASS:155,0,305 chr1 179852074 . T C 887 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:13:6:7,6:1,1:6,5:-8:PASS:105,0,121 chr1 179876988 . C G 633 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:48:15:4:10,5:7,4:3,1:-6.6:PASS:83,0,166 chr1 179887125 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:385:385:129:15:0,129:0,54:0,75:-152.8:PASS:370,370,0 chr1 180145088 . A G 736 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:3:0,12:0,10:0,2:-15.3:PASS:229,36,0 chr1 180885430 . T C 1679 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:5:0,31:0,19:0,12:-43.6:PASS:370,93,0 chr1 180897569 . C T 165 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:62:8:2:4,4:4,3:0,1:-7.8:PASS:97,0,73 chr1 180905352 . C T 236 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:154:37:8:19,18:9,10:10,8:-18.9:PASS:189,0,191 chr1 180905448 . G T 290 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:28:14:14,14:5,9:9,5:-12.8:PASS:161,0,174 chr1 180910200 . A G 112 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:55:6:3:3,3:1,2:2,1:-7.3:PASS:89,0,89 chr1 180913597 . A G 829 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:0:0,9:0,4:0,5:-20.9:PASS:198,27,0 chr1 180953853 . A G 827 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:115:33:4:10,23:7,13:3,10:-29.4:PASS:266,0,112 chr1 181725110 . T C 338 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:41:5:24,17:13,12:11,5:-12:PASS:160,0,238 chr1 181727947 . C T 341 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:192:49:10:21,28:14,16:7,12:-27.6:PASS:260,0,189 chr1 181741301 . C T 360 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:218:54:12:25,29:6,8:19,21:-23.1:PASS:265,0,215 chr1 181759657 . G A 529 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:97:21:7:12,9:6,2:6,7:-9.8:PASS:131,0,164 chr1 182026278 . G A 157 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:21:7:16,5:6,2:10,3:-8.5:PASS:80,0,210 chr1 182356399 . A G 1891 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:8:0,34:0,9:0,25:-34.5:PASS:370,102,0 chr1 182369078 . G A 2597 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:6:0,50:0,32:0,18:-57.5:PASS:370,150,0 chr1 182369233 . A G 2566 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:18:0,47:0,21:0,26:-65.8:PASS:370,141,0 chr1 182442981 . G A 585 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:298:298:93:19:43,50:25,32:18,18:-34:PASS:370,0,295 chr1 182443462 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:9:0,83:0,31:0,52:-91.5:PASS:370,250,0 chr1 182569626 . T C 1201 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:8:0,29:0,10:0,19:-36.8:PASS:370,87,0 chr1 182775637 . C T 402 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:222:213:51:18:24,27:3,2:21,25:-11.9:PASS:248,0,219 chr1 182785865 . C T 736 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:5:0,34:0,18:0,16:-53:PASS:370,102,0 chr1 182787951 . C T 806 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:1:0,35:0,12:0,23:-43.8:PASS:370,105,0 chr1 182850727 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:10:0,88:0,43:0,45:-118.9:PASS:370,265,0 chr1 182874667 . T G 612 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:292:291:82:7:38,44:30,31:8,13:-27.6:PASS:334,0,289 chr1 182920465 . A G 254 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:39:10:25,14:19,9:6,5:-15.4:PASS:134,0,256 chr1 182922003 . G T 93 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:75:50:6:0:3,3:2,1:1,2:-7.3:PASS:85,0,73 chr1 183072590 . T C 772 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:50:12:28,22:15,7:13,15:-13.6:PASS:192,0,256 chr1 183085755 . A G 872 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:182:50:10:21,29:15,23:6,6:-19.3:PASS:285,0,179 chr1 183086757 . A C 852 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:212:50:5:23,27:11,10:12,17:-22.4:PASS:250,0,211 chr1 183093875 . T C 781 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:133:37:15:21,16:11,11:10,5:-13.2:PASS:168,0,211 chr1 183094547 . T C 463 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:36:2:19,17:15,14:4,3:-13.7:PASS:178,0,197 chr1 183105534 . T C 1077 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:6:0,26:0,19:0,7:-29.3:PASS:370,78,0 chr1 183105705 . G A 965 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:4:0,25:0,1:0,24:-9.4:PASS:359,75,0 chr1 183184616 . C T 323 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:31:5:17,14:11,10:6,4:-13.6:PASS:159,0,196 chr1 183187603 . C T 565 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:254:76:15:34,42:14,23:20,19:-34.4:PASS:343,0,251 chr1 183192304 . T G 281 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:138:25:3:10,15:8,10:2,5:-19.9:PASS:191,0,135 chr1 183192386 . C T 218 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:134:27:5:13,14:1,8:12,6:-12.1:PASS:169,0,143 chr1 183206573 . G A 487 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:165:42:5:17,25:4,13:13,12:-24.2:PASS:255,0,162 chr1 183486859 . G A 2527 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:10:0,47:0,28:0,19:-60.2:PASS:370,141,0 chr1 183516326 . C T 287 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:40:8:23,17:14,9:9,8:-18:PASS:166,0,230 chr1 183542387 . T C 515 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:92:27:3:16,11:4,3:12,8:-11.8:PASS:127,0,199 chr1 183616926 . T C 897 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:43:12:28,15:22,9:6,6:-12.6:PASS:139,0,288 chr1 183617105 . A G 1612 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:224:96:15:56,40:28,18:28,22:-25:PASS:259,0,370 chr1 183909717 . G A 261 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:36:5:20,16:17,14:3,2:-9.9:PASS:162,0,211 chr1 183920191 . T G 392 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:207:52:2:26,26:12,14:14,12:-24.9:PASS:241,0,235 chr1 184801065 . T C 419 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:205:54:14:25,29:12,16:13,13:-26.6:PASS:253,0,202 chr1 185067325 . C T 472 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:216:73:11:40,33:19,14:21,19:-24.8:PASS:251,0,328 chr1 185135745 . A G 887 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:5:0,42:0,17:0,25:-55.9:PASS:370,126,0 chr1 185143721 . A G 1127 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:275:275:82:14:37,45:24,26:13,19:-38.8:PASS:361,0,272 chr1 185171869 . A G 388 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:241:208:61:10:32,29:15,12:17,17:-24:PASS:242,0,279 chr1 185240474 . A G 552 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:7:0,25:0,10:0,15:-38:PASS:370,75,0 chr1 186026474 . T C 2882 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:4:0,59:0,28:0,31:-84.2:PASS:370,178,0 chr1 186031041 . C T 2189 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:4:0,46:0,25:0,21:-66.7:PASS:370,138,0 chr1 186050417 . A G 2302 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:50:7:1,49:1,25:0,24:-67.9:PASS:370,114,0 chr1 186101539 . A G 1495 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:3:0,36:0,15:0,21:-50.3:PASS:370,108,0 chr1 186273994 . C T 964 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:504:471:221:42:125,96:65,49:60,47:-56.8:PASS:370,0,370 chr1 186277088 . G C 2132 PASS SNVHPOL=3;MQ=40;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:21:0,35:0,27:0,8:-32.9:PASS:370,105,0 chr1 186277989 . A G 1154 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:543:510:187:40:98,89:46,35:52,54:-46.2:PASS:370,0,370 chr1 186363119 . C G 322 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:38:1:23,15:8,4:15,11:-13.7:PASS:156,0,245 chr1 186370281 . C G 487 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:187:69:10:40,29:9,12:31,17:-22.8:PASS:221,0,331 chr1 186946912 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:11:0,88:0,24:0,64:-73.8:PASS:370,265,0 chr1 196227526 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:10:0,76:0,48:0,28:-83.7:PASS:370,229,0 chr1 196646659 . G T 592 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:139:61:8:38,23:23,15:15,8:-16.2:PASS:174,0,343 chr1 196654324 . A C 1609 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:9:0,72:0,24:0,48:-74.9:PASS:370,217,0 chr1 196659237 . C T 1739 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:9:0,82:0,54:0,28:-84.1:PASS:370,247,0 chr1 196695742 . A G 2459 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:337:337:113:13:0,113:0,46:0,67:-131.9:PASS:370,340,0 chr1 196709774 . G T 1110 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:10:0,41:0,25:0,16:-52.6:PASS:370,123,0 chr1 196757392 . C T 2965 PASS SNVHPOL=2;MQ=54;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:8:0,71:0,51:0,20:-60.3:PASS:370,214,0 chr1 196759282 . C T 463 PASS SNVHPOL=3;MQ=44;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:3:0,6:0,3:0,3:-18.4:PASS:164,18,0 chr1 196759347 . A T 491 PASS SNVHPOL=3;MQ=32;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:1:0,10:0,4:0,6:-21.7:PASS:208,30,0 chr1 196797238 . C T 3070 PASS SNVHPOL=2;MQ=54;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:388:388:130:16:0,130:0,80:0,50:-138.6:PASS:370,370,0 chr1 196797244 . C G 3070 PASS SNVHPOL=2;MQ=53;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:337:337:113:26:0,113:0,65:0,48:-134.5:PASS:370,340,0 chr1 196797292 . G C 3070 PASS SNVHPOL=3;MQ=52;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:325:325:109:14:0,109:0,71:0,38:-106.4:PASS:370,328,0 chr1 196797357 . A G 3070 PASS SNVHPOL=2;MQ=51;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:352:352:118:19:0,118:0,70:0,48:-132.4:PASS:370,355,0 chr1 196799691 . G A 2335 PASS SNVHPOL=4;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:331:331:111:10:0,111:0,60:0,51:-144.2:PASS:370,334,0 chr1 196801042 . G T 3070 PASS SNVHPOL=4;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:319:319:107:12:0,107:0,55:0,52:-146.4:PASS:370,322,0 chr1 196801078 . A T 3070 PASS SNVHPOL=2;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:307:307:103:8:0,103:0,40:0,63:-116.5:PASS:370,310,0 chr1 196874356 . G T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:5:0,76:0,43:0,33:-97.4:PASS:370,229,0 chr1 196884258 . A T 882 PASS SNVHPOL=3;MQ=39;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:293:260:115:9:67,48:22,6:45,42:-6.1:PASS:294,0,370 chr1 196967354 . G A 635 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:321:317:89:11:43,46:17,22:26,24:-39.2:PASS:355,0,318 chr1 197030201 . T C 1692 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:11:0,38:0,11:0,27:-40:PASS:370,114,0 chr1 197031021 . C T 1583 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:4:0,45:0,19:0,26:-61:PASS:370,135,0 chr1 197070442 . G T 1858 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:250:250:84:8:0,84:0,47:0,37:-108.3:PASS:370,253,0 chr1 197070697 . T C 1536 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:6:0,71:0,37:0,34:-100.3:PASS:370,214,0 chr1 197070707 . G A 1523 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:5:0,71:0,34:0,37:-101.6:PASS:370,214,0 chr1 197070815 . T C 2148 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:16:0,75:0,35:0,40:-100.9:PASS:370,226,0 chr1 197070901 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:13:0,77:0,40:0,37:-107.5:PASS:370,232,0 chr1 197072420 . T C 2699 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:388:388:130:16:0,130:0,61:0,69:-169.2:PASS:370,370,0 chr1 197072929 . G A 720 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:382:349:137:17:76,61:34,30:42,31:-42:PASS:370,0,370 chr1 197073932 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:400:400:146:6:1,145:0,75:1,70:-186:PASS:370,370,0 chr1 197091537 . A T 2268 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:8:0,81:0,37:0,44:-109.9:PASS:370,244,0 chr1 197112533 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:456:456:166:21:1,165:1,85:0,80:-220.7:PASS:370,370,0 chr1 197298095 . T C 551 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:140:51:4:30,21:8,8:22,13:-19.4:PASS:175,0,287 chr1 197390368 . A G 1875 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:295:277:77:12:38,39:20,19:18,20:-34.1:PASS:312,0,292 chr1 197480927 . C T 396 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:60:8:34,26:22,17:12,9:-19.7:PASS:216,0,309 chr1 198676063 . A C 741 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:231:203:51:3:25,26:10,6:15,20:-15.3:PASS:238,0,230 chr1 200017586 . C G 1568 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:297:266:76:7:38,38:17,22:21,16:-27.4:PASS:300,0,298 chr1 200376695 . C T 590 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:341:308:106:16:56,50:36,29:20,21:-37.8:PASS:343,0,370 chr1 200522566 . G C 1876 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:280:280:94:8:0,94:0,66:0,28:-83.8:PASS:370,283,0 chr1 200534248 . C T 2284 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:6:0,46:0,25:0,21:-66.4:PASS:370,138,0 chr1 200558363 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:6:0,72:0,49:0,23:-71.4:PASS:370,217,0 chr1 200618238 . T C 2870 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:6:0,61:0,41:0,20:-61.9:PASS:370,184,0 chr1 200956288 . A G 836 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:7:0,32:0,3:0,29:-17.5:PASS:370,96,0 chr1 200967687 . C G 119 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:104:71:11:2:6,5:2,2:4,3:-11.8:PASS:106,0,128 chr1 200978412 . C T 240 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:30:2:17,13:13,9:4,4:-16.5:PASS:153,0,197 chr1 201009182 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:16:0,81:0,54:0,27:-81.8:PASS:370,244,0 chr1 201012484 . C T 323 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:30:8:18,12:9,7:9,5:-14.8:PASS:134,0,202 chr1 201035429 . G A 1729 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:302:269:83:28:43,40:16,23:27,17:-24.4:PASS:304,0,329 chr1 201038687 . A G 807 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:413:380:150:38:83,67:47,44:36,23:-31:PASS:370,0,370 chr1 201047062 . G A 980 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:49:8:28,21:11,8:17,13:-18.6:PASS:184,0,260 chr1 201047075 . A G 3041 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:5:0,57:0,19:0,38:-61:PASS:370,172,0 chr1 201112981 . A G 391 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:113:20:3:10,10:3,5:7,5:-16.6:PASS:148,0,144 chr1 201122947 . T G 680 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:22:4:14,8:5,4:9,4:-13.3:PASS:125,0,184 chr1 201166383 . G A 400 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:44:8:2:5,3:3,1:2,2:-6.6:PASS:79,0,120 chr1 201166435 . T C 685 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:0:0,11:0,4:0,7:-22.3:PASS:218,33,0 chr1 201175227 . C A 874 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:5:0,15:0,12:0,3:-19:PASS:268,45,0 chr1 201175274 . A G 256 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:95:15:8:5,10:4,9:1,1:-7.1:PASS:139,0,92 chr1 201175715 . G T 1825 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:11:0,32:0,17:0,15:-50.2:PASS:370,96,0 chr1 201176018 . A G 1357 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:12:0,25:0,17:0,8:-31.8:PASS:370,75,0 chr1 201176651 . C T 907 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:158:40:14:16,24:5,15:11,9:-20:PASS:234,0,155 chr1 201181223 . A G 1974 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:13:0,35:0,21:0,14:-48.9:PASS:370,105,0 chr1 201181994 . A G 591 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:133:29:7:15,14:13,11:2,3:-15.9:PASS:168,0,167 chr1 201187764 . T C 596 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:3:0,10:0,3:0,7:-17.1:PASS:204,30,0 chr1 201285759 . A G 1141 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:7:0,18:0,5:0,13:-23.4:PASS:299,54,0 chr1 201334382 . G A 2288 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:10:0,55:0,30:0,25:-76.2:PASS:370,166,0 chr1 201355522 . T C 998 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:108:20:8:10,10:8,8:2,2:-12.6:PASS:143,0,138 chr1 201355943 . C T 1988 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:261:228:67:23:34,33:13,25:21,8:-11.4:PASS:263,0,287 chr1 201860626 . A G 876 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:5:0,20:0,5:0,15:-23.8:PASS:325,60,0 chr1 201934578 . G A 388 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:40:3:25,15:22,10:3,5:-15.6:PASS:146,0,259 chr1 201969082 . G A 1152 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:9:0,28:0,16:0,12:-42.7:PASS:370,84,0 chr1 201970562 . T C 2144 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:8:0,59:0,38:0,21:-65.3:PASS:370,178,0 chr1 201981218 . C G 510 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:16:2:8,8:5,4:3,4:-13.8:PASS:129,0,136 chr1 201981862 . T C 259 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:57:8:4:3,5:0,4:3,1:-6.6:PASS:112,0,54 chr1 202092415 . A G 1084 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:36:18:22,14:7,12:15,2:-3.6:PASS:146,0,239 chr1 202092580 . T C 1680 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:186:54:17:22,32:12,16:10,16:-33.2:PASS:292,0,183 chr1 202129826 . T C 270 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:94:14:4:6,8:1,5:5,3:-13.9:PASS:149,0,91 chr1 202129895 . G A 136 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:9:4:5,4:1,0:4,4:0.7:PASS:70,0,109 chr1 202276494 . C T 359 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:60:16:3:11,5:6,3:5,2:-10.5:PASS:95,0,164 chr1 202287206 . T C 587 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:80:12:5:5,7:2,1:3,6:-7.3:PASS:115,0,99 chr1 202287537 . G A 534 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:22:9:13,9:6,5:7,4:-14:PASS:128,0,173 chr1 202287813 . T C 1064 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:38:17:23,15:15,6:8,9:-12.4:PASS:151,0,240 chr1 202304868 . T C 209 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:82:35:4:24,11:10,5:14,6:-12.3:PASS:117,0,250 chr1 202565948 . G A 214 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:104:21:7:11,10:11,5:0,5:-10.6:PASS:140,0,106 chr1 202574784 . G A 744 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:31:8:19,11:10,6:9,5:-12.4:PASS:123,0,219 chr1 202705455 . G C 1675 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:3:0,51:0,21:0,30:-65.5:PASS:370,153,0 chr1 202715284 . G A 2463 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:19:0,58:0,33:0,25:-76.6:PASS:370,175,0 chr1 202718202 . G A 2148 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:6:0,53:0,20:0,33:-64.2:PASS:370,160,0 chr1 202733238 . C T 1883 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:5:0,50:0,23:0,27:-71.9:PASS:370,150,0 chr1 203143725 . G C 104 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:75:42:16:2:9,7:1,0:8,7:0.7:PASS:77,0,131 chr1 203148633 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:406:406:136:33:0,136:0,78:0,58:-161.2:PASS:370,370,0 chr1 203317162 . C T 982 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:47:12:24,23:16,18:8,5:-12.3:PASS:194,0,216 chr1 203652444 . A G 1174 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:5:0,32:0,16:0,16:-52.3:PASS:370,96,0 chr1 203667409 . T C 1822 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:8:0,43:0,10:0,33:-37.1:PASS:370,129,0 chr1 203677220 . C T 499 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:133:38:9:22,16:9,6:13,10:-16.8:PASS:168,0,234 chr1 203681255 . C T 462 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:155:59:17:35,24:16,16:19,8:-14.3:PASS:190,0,315 chr1 203696609 . C T 466 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:142:29:11:14,15:7,12:7,3:-12.1:PASS:177,0,158 chr1 203766827 . T C 914 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:272:269:71:10:34,37:21,24:13,13:-27.7:PASS:306,0,269 chr1 203787700 . T C 2142 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:7:0,41:0,27:0,14:-47.6:PASS:370,123,0 chr1 204159922 . T C 539 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:109:20:12:11,9:1,3:10,6:-16.6:PASS:144,0,137 chr1 204198209 . A G 509 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:107:74:22:5:14,8:1,2:13,6:-11.8:PASS:109,0,164 chr1 204199614 . C T 374 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:64:17:3:11,6:3,4:8,2:-8.4:PASS:99,0,146 chr1 204237416 . C T 261 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:85:69:7:1:3,4:1,1:2,3:-8:PASS:104,0,82 chr1 204379617 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:245:245:86:7:0,85:0,42:0,43:-120.9:PASS:370,256,0 chr1 204394082 . G A 257 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:67:67:11:2:4,7:0,4:4,3:-14.2:PASS:140,0,64 chr1 204394809 . G A 464 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:220:66:11:35,31:9,12:26,19:-28.4:PASS:255,0,284 chr1 204396830 . G A 587 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:168:39:14:19,20:11,13:8,7:-18.6:PASS:203,0,191 chr1 204399061 . A G 82 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:10:4:6,4:5,2:1,2:-7.1:PASS:80,0,105 chr1 204399064 . G A 95 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:66:33:9:5:6,3:5,1:1,2:-5.2:PASS:68,0,108 chr1 204402500 . C T 330 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:17:3:9,8:4,2:5,6:-11.2:PASS:135,0,144 chr1 204403659 . A G 376 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:125:21:2:10,11:7,7:3,4:-17.4:PASS:160,0,143 chr1 204438334 . C T 1060 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:155:34:18:16,18:6,9:10,9:-21:PASS:190,0,167 chr1 204438643 . G T 910 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:36:8:25,11:11,2:14,9:-6.3:PASS:112,0,260 chr1 204587240 . G A 595 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:115:22:6:8,14:5,6:3,8:-19.4:PASS:188,0,112 chr1 204943947 . C A 1246 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:3:0,28:0,10:0,18:-36:PASS:370,84,0 chr1 205130413 . A G 1357 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:2:0,24:0,15:0,9:-34.8:PASS:370,72,0 chr1 205492756 . A G 661 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:21:21:8:4:0,8:0,5:0,3:-19:PASS:190,24,0 chr1 205549059 . C T 268 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:88:88:12:7:4,8:3,5:1,3:-16.3:PASS:151,0,85 chr1 205554085 . G C 812 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:8:0,19:0,8:0,11:-30:PASS:302,57,0 chr1 205554095 . A C 362 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:110:17:7:8,9:3,3:5,6:-15.2:PASS:145,0,125 chr1 205589574 . C T 2499 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:292:292:98:19:0,98:0,48:0,50:-138:PASS:370,295,0 chr1 205779231 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:19:0,88:0,42:0,46:-121.8:PASS:370,265,0 chr1 205812912 . A G 462 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:58:25:13:7:10,3:3,1:7,2:-5.7:PASS:60,0,176 chr1 205814497 . T C 1258 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:3:0,28:0,19:0,9:-34:PASS:370,84,0 chr1 205817018 . T C 226 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:140:24:4:11,13:6,10:5,3:-13.4:PASS:177,0,141 chr1 205819039 . C T 165 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:18:5:9,9:5,6:4,3:-12.6:PASS:134,0,140 chr1 205819104 . G A 157 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:102:69:21:8:14,7:10,3:4,4:-9:PASS:103,0,192 chr1 205884062 . T C 422 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:122:34:9:19,15:13,9:6,6:-16.3:PASS:157,0,211 chr1 205884274 . T C 441 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:98:36:7:11,25:1,9:10,16:-27.6:PASS:266,0,95 chr1 206325299 . C G 409 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:142:36:11:14,22:12,15:2,7:-23.9:PASS:237,0,139 chr1 206327510 . T C 272 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:137:31:8:16,15:9,10:7,5:-15.8:PASS:172,0,178 chr1 206328803 . T C 287 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:142:35:10:19,16:13,9:6,7:-19.6:PASS:177,0,205 chr1 206516261 . C T 502 PASS SNVHPOL=5;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:65:13:44,21:36,17:8,4:-11.3:PASS:134,0,370 chr1 206566904 . T C 1556 PASS SNVHPOL=2;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:432:399:134:42:69,65:50,55:19,10:-17.5:PASS:370,0,370 chr1 206579798 . T C 240 PASS SNVHPOL=3;MQ=13;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:74:41:17:3:10,7:7,7:3,0:2.1:PASS:76,0,145 chr1 206579936 . A G 133 PASS SNVHPOL=2;MQ=15;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:27:4:17,10:10,8:7,2:-6.4:PASS:107,0,194 chr1 206603535 . G A 785 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:2:0,17:0,9:0,8:-32.8:PASS:294,51,0 chr1 206634429 . A G 350 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:97:25:5:15,10:9,8:6,2:-9.8:PASS:132,0,185 chr1 206647742 . A G 1327 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:3:0,32:0,15:0,17:-49.4:PASS:370,96,0 chr1 206647787 . T C 547 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:30:6:20,10:8,3:12,7:-10.1:PASS:117,0,226 chr1 206669465 . C T 130 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:7:0:4,3:2,2:2,1:-7.3:PASS:80,0,110 chr1 206680983 . A C 951 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:6:0,10:0,4:0,6:-21.8:PASS:214,30,0 chr1 206773659 . A G 1253 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:7:0,24:0,8:0,16:-31.5:PASS:370,72,0 chr1 206905040 . C T 344 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:32:32:21:7:5,16:0,6:5,10:-23.1:PASS:218,0,29 chr1 207015957 . T C 597 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:26:1:16,10:7,4:9,6:-14.7:PASS:139,0,202 chr1 207074905 . T C 426 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:180:44:2:19,25:10,11:9,14:-25.3:PASS:249,0,177 chr1 207087435 . C T 304 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:41:9:24,17:8,2:16,15:-8.4:PASS:162,0,236 chr1 207106444 . A G 405 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:117:26:3:10,16:5,11:5,5:-15.9:PASS:194,0,114 chr1 207106478 . G A 327 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:112:22:3:8,14:2,5:6,9:-18.5:PASS:182,0,109 chr1 207109116 . C T 342 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:57:16:32,25:13,17:19,8:-14.1:PASS:212,0,290 chr1 207110888 . G A 626 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:60:10:34,26:16,9:18,17:-17.8:PASS:213,0,301 chr1 207110936 . T C 1368 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:11:0,53:0,29:0,24:-74.8:PASS:370,160,0 chr1 207134564 . G A 305 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:123:27:7:12,15:2,1:10,14:-6.4:PASS:157,0,141 chr1 207195779 . A G 1861 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:7:0,35:0,17:0,18:-55.4:PASS:370,105,0 chr1 207238419 . C T 310 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:59:5:36,23:24,14:12,9:-20.5:PASS:182,0,324 chr1 207269919 . C T 968 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:104:89:10:2:4,6:2,3:2,3:-14.1:PASS:124,0,101 chr1 207297680 . T C 1821 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:61:11:35,26:12,12:23,14:-21.2:PASS:199,0,306 chr1 207304900 . T C 1178 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:142:43:7:24,19:19,12:5,7:-20.1:PASS:177,0,234 chr1 207305069 . A C 720 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:70:9:41,29:15,9:26,20:-17.3:PASS:212,0,349 chr1 207497911 . C T 572 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:57:9:36,21:29,18:7,3:-12.5:PASS:164,0,335 chr1 207646322 . G A 763 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:253:77:13:34,42:20,25:14,17:-34.1:PASS:346,0,250 chr1 207646898 . T C 695 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:256:67:13:32,35:27,31:5,4:-16:PASS:297,0,254 chr1 207653364 . A G 1112 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:223:70:4:37,33:22,14:15,19:-21.4:PASS:258,0,307 chr1 207653395 . C A 1194 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:267:240:67:5:33,34:21,13:12,21:-20.8:PASS:275,0,266 chr1 207679307 . A G 1826 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:264:261:69:19:33,36:23,19:10,17:-32.1:PASS:300,0,261 chr1 207715740 . T C 43 PASS SNVHPOL=3;MQ=9;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:46:18:4:0:2,2:2,2:0,0:0:PASS:52,0,46 chr1 207753621 . A G 528 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:172:51:15:28,23:16,12:12,11:-23.5:PASS:207,0,260 chr1 207782916 . A T 2692 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:18:0,42:0,19:0,23:-58.6:PASS:370,126,0 chr1 207782931 . A G 466 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:142:43:13:22,21:10,9:12,12:-18.3:PASS:176,0,190 chr1 207790088 . C G 813 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:318:90:15:44,46:10,16:34,30:-35.2:PASS:353,0,328 chr1 207795320 . A G 1361 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:114:40:1:25,15:11,8:14,7:-15.4:PASS:149,0,266 chr1 207851611 . A G 1615 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:182:43:2:21,22:9,13:12,9:-20.3:PASS:217,0,199 chr1 207857254 . A G 616 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:233:59:4:27,32:9,9:18,23:-21.6:PASS:280,0,230 chr1 207881557 . A G 1427 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:160:46:4:26,20:13,14:13,6:-14.4:PASS:195,0,257 chr1 207890866 . T C 524 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:326:314:91:20:44,47:26,28:18,19:-35.3:PASS:349,0,323 chr1 208207839 . G A 724 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:1:0,18:0,11:0,7:-29.5:PASS:301,54,0 chr1 208212224 . C T 350 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:158:43:8:23,20:14,8:9,12:-16.8:PASS:193,0,226 chr1 209783233 . G A 277 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:159:36:3:16,20:8,11:8,9:-22:PASS:214,0,157 chr1 209785206 . G A 896 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:18:0,34:0,19:0,15:-48.3:PASS:370,102,0 chr1 209788703 . T C 2335 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:331:331:111:21:0,111:0,50:0,61:-141.1:PASS:370,334,0 chr1 209799253 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:494:494:165:42:0,165:0,92:0,73:-198.9:PASS:370,370,0 chr1 209811886 . T G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:563:563:188:56:0,188:0,117:0,71:-191.3:PASS:370,370,0 chr1 209849194 . T G 18 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:51:18:10:4:7,3:3,1:4,2:-4.5:PASS:53,0,139 chr1 209933540 . A G 839 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:140:26:6:11,15:6,4:5,11:-14:PASS:185,0,137 chr1 209936914 . C T 886 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:28:10:18,10:9,3:9,7:-10.1:PASS:120,0,216 chr1 209950760 . C G 225 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:107:21:4:11,10:8,7:3,3:-14.3:PASS:142,0,160 chr1 210004199 . C G 750 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:114:36:3:22,14:15,11:7,3:-12.5:PASS:149,0,238 chr1 210006603 . C T 1227 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:243:243:64:8:30,34:18,15:12,19:-27.1:PASS:286,0,240 chr1 210267893 . TGAA T 1134 PASS CIGAR=1M3D;RU=GAA;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:395:361:74:44,26:19,9:25,17:PASS:392,0,675 chr1 210334081 . T C 335 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:58:4:37,21:30,18:7,3:-12.5:PASS:164,0,338 chr1 210573916 . C T 376 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:33:11:22,11:13,5:9,6:-12.5:PASS:121,0,240 chr1 210577873 . G C 1346 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:8:0,37:0,29:0,8:-31:PASS:370,111,0 chr1 210761365 . A G 425 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:122:33:10:18,15:12,11:6,4:-15.1:PASS:157,0,205 chr1 210857457 . A G 713 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:156:36:6:15,21:4,9:11,12:-24.8:PASS:218,0,153 chr1 212273639 . C T 2008 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:8:0,33:0,25:0,8:-32.8:PASS:370,99,0 chr1 212274413 . A C 2323 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:16:0,48:0,19:0,29:-58:PASS:370,144,0 chr1 212515613 . C T 1744 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:2:0,37:0,15:0,22:-48.5:PASS:370,111,0 chr1 212560327 . A G 1508 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:5:0,24:0,11:0,13:-40.9:PASS:369,72,0 chr1 212619339 . T C 347 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:38:12:19,19:9,7:10,12:-17.3:PASS:194,0,201 chr1 212798977 . A G 1138 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:170:41:11:20,21:12,12:8,9:-22:PASS:205,0,202 chr1 212799870 . A G 2647 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:8:0,59:0,28:0,31:-84.1:PASS:370,178,0 chr1 212799949 . C T 357 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:34:13:18,16:4,4:14,12:-14:PASS:163,0,184 chr1 212911836 . T C 1637 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:64:9:40,24:26,16:14,8:-15.2:PASS:170,0,359 chr1 212965067 . T C 495 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:15:1:9,6:6,3:3,3:-11.3:PASS:108,0,140 chr1 212965284 . C G 217 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:16:9:3:7,2:1,1:6,1:-3.6:PASS:50,0,120 chr1 213186688 . C G 1193 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:64:8:41,23:12,7:29,16:-17:PASS:170,0,370 chr1 213415378 . G T 3004 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:411:378:168:9:96,72:42,36:54,36:-43.5:PASS:370,0,370 chr1 214492286 . G A 1648 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:9:0,29:0,12:0,17:-42.2:PASS:370,87,0 chr1 214537978 . G A 524 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:33:2:19,14:2,3:17,11:-12.6:PASS:146,0,203 chr1 214542819 . T C 1582 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:49:7:26,23:21,16:5,7:-21.6:PASS:211,0,241 chr1 214564340 . T C 2543 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:262:229:83:18:46,37:34,23:12,14:-29.2:PASS:264,0,370 chr1 214811244 . C G 1387 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:161:37:3:18,19:12,9:6,10:-19.8:PASS:195,0,189 chr1 214815304 . C T 2040 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:272:239:79:16:43,36:14,12:29,24:-25.3:PASS:273,0,344 chr1 214816224 . G A 2562 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:218:72:11:30,42:13,23:17,19:-36.8:PASS:359,0,215 chr1 214816281 . G C 1566 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:227:75:11:31,44:13,18:18,26:-37.7:PASS:370,0,224 chr1 214818223 . T A 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:244:93:10:53,40:30,19:23,21:-28:PASS:279,0,370 chr1 214826196 . G A 442 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:231:198:55:4:29,26:25,19:4,7:-22.5:PASS:233,0,259 chr1 214830617 . A G 665 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:313:280:93:13:49,44:18,23:31,21:-29.6:PASS:315,0,370 chr1 214837110 . C G 283 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:90:37:4:13,24:0,3:13,21:-16.9:PASS:259,0,87 chr1 215793834 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:310:310:104:19:0,104:0,59:0,45:-130.6:PASS:370,313,0 chr1 215848641 . T C 816 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:207:92:11:54,38:29,18:25,20:-23.9:PASS:242,0,370 chr1 215914826 . T C 186 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:27:21:9:17,4:9,3:8,1:-3.2:PASS:62,0,219 chr1 215916563 . G A 552 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:137:43:7:25,18:16,10:9,8:-19.5:PASS:171,0,251 chr1 215953288 . G T 1046 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:167:34:7:15,19:11,12:4,7:-21.4:PASS:203,0,171 chr1 215960167 . T G 1580 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:5:0,40:0,13:0,27:-43.6:PASS:370,120,0 chr1 215987222 . T C 1879 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:318:285:90:12:47,43:7,17:40,26:-34.1:PASS:320,0,369 chr1 216172380 . A G 714 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:278:256:68:4:33,35:9,16:24,19:-31.7:PASS:291,0,276 chr1 216173861 . G A 924 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:161:36:4:18,18:7,5:11,13:-15.3:PASS:196,0,183 chr1 216219781 . A G 1945 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:11:0,45:0,23:0,22:-70.6:PASS:370,135,0 chr1 216258213 . A G 319 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:59:2:36,23:11,6:25,17:-14.3:PASS:178,0,331 chr1 216348764 . C T 2056 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:71:8:43,28:17,13:26,15:-22:PASS:200,0,370 chr1 216462662 . T A 360 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:61:6:36,25:19,19:17,6:-11.2:PASS:205,0,317 chr1 216692669 . C T 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:10:0,68:0,28:0,40:-85.9:PASS:370,205,0 chr1 216692741 . C T 1578 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:224:191:66:4:37,29:13,9:24,20:-19.1:PASS:226,0,311 chr1 216880743 . C T 220 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:93:36:3:24,12:12,6:12,6:-14.5:PASS:128,0,258 chr1 217856626 . G A 944 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:122:24:3:8,16:4,9:4,7:-22.7:PASS:211,0,119 chr1 217947738 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:13:0,58:0,38:0,20:-61.9:PASS:370,175,0 chr1 217947861 . T A 507 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:252:247:64:9:31,33:11,9:20,24:-21.6:PASS:284,0,249 chr1 218478411 . G C 417 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:160:47:1:18,29:8,20:10,9:-21.1:PASS:278,0,157 chr1 219383867 . T C 1398 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:7:0,39:0,27:0,12:-39.1:PASS:370,117,0 chr1 219383905 . A G 1927 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:7:0,47:0,28:0,19:-59.2:PASS:370,141,0 chr1 220101514 . G A 1086 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:50:17:31,19:14,9:17,10:-18.9:PASS:165,0,299 chr1 220197625 . G T 1730 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:222:189:64:9:36,28:27,22:9,6:-15.8:PASS:223,0,316 chr1 220970028 . A G 1176 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:31:31:25:5:1,24:0,16:1,8:-23.4:PASS:328,34,0 chr1 221057739 . C G 1049 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:47:14:25,22:16,10:9,12:-18.5:PASS:191,0,231 chr1 221912361 . T C 2281 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:10:0,54:0,23:0,31:-71.3:PASS:370,163,0 chr1 222713503 . C G 1115 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:213:180:59:14:33,26:18,19:15,7:-13.7:PASS:215,0,288 chr1 222713631 . G C 1242 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:216:58:12:25,33:8,10:17,23:-24.4:PASS:294,0,213 chr1 222721160 . C T 574 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:48:24:2:15,9:11,9:4,0:2.8:PASS:83,0,191 chr1 222721288 . C T 547 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:17:5:10,7:3,4:7,3:-11:PASS:122,0,152 chr1 222802006 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:17:0,71:0,32:0,39:-93.6:PASS:370,214,0 chr1 222802376 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:250:250:84:16:0,84:0,38:0,46:-110.9:PASS:370,253,0 chr1 222802926 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:277:277:93:17:0,93:0,42:0,51:-122.6:PASS:370,280,0 chr1 222803204 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:19:0,70:0,34:0,36:-100:PASS:370,211,0 chr1 222833601 . T C 1935 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:5:0,34:0,12:0,22:-42.5:PASS:370,102,0 chr1 223116240 . G A 1081 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:40:12:25,15:16,8:9,7:-13.7:PASS:139,0,256 chr1 223116472 . G A 403 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:251:218:67:11:35,31:17,18:18,13:-23.2:PASS:253,0,286:223116472 chr1 223116474 . G T 493 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:250:250:71:8:33,38:17,20:16,18:-34.5:PASS:321,0,247:223116472 chr1 223177574 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:280:280:94:8:0,94:0,50:0,44:-125.1:PASS:370,283,0 chr1 223283910 . A G 2690 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:9:0,44:0,35:0,9:-35.5:PASS:370,132,0 chr1 223284528 . A G 636 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:334:334:103:27:48,55:23,20:25,35:-34.1:PASS:370,0,331 chr1 223717484 . G A 872 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:6:0,10:0,4:0,6:-22:PASS:209,30,0 chr1 223718651 . G A 95 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:57:17:4:10,7:3,1:7,6:-6.6:PASS:92,0,131 chr1 223813586 . G T 515 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:98:17:1:6,11:2,4:4,7:-16.8:PASS:162,0,95 chr1 223816454 . G A 663 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:22:5:12,10:7,4:5,6:-12.8:PASS:140,0,156 chr1 223900408 . C G 142 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:7:4:4,3:3,2:1,1:-8:PASS:80,0,104 chr1 223905532 . G A 209 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:88:88:15:4:6,9:1,3:5,6:-12.9:PASS:136,0,85 chr1 223934720 . G A 1366 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:10:0,22:0,18:0,4:-20.8:PASS:339,66,0 chr1 223947081 . A G 1261 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:173:54:16:21,33:12,19:9,14:-32.4:PASS:313,0,170 chr1 224489411 . A G 246 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:48:15:25:6:18,7:18,7:0,0:0:PASS:49,0,178 chr1 224492746 . C T 702 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:249:74:10:38,36:21,12:17,24:-18.7:PASS:283,0,302 chr1 224495852 . C T 706 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:226:83:10:46,37:25,14:21,23:-19.4:PASS:261,0,369 chr1 225230608 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:11:0,64:0,36:0,28:-85.6:PASS:370,193,0 chr1 225266966 . C G 2289 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:7:0,40:0,32:0,8:-31.8:PASS:370,120,0 chr1 225268343 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:9:0,78:0,27:0,51:-83.1:PASS:370,235,0 chr1 225268346 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:8:0,80:0,24:0,56:-75.5:PASS:370,241,0 chr1 225270409 . A T 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:5:0,85:0,31:0,54:-93.5:PASS:370,256,0 chr1 225273248 . G T 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:3:0,64:0,47:0,17:-56.1:PASS:370,193,0 chr1 225555512 . C T 2600 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:8:0,47:0,32:0,15:-50.8:PASS:370,141,0 chr1 225555602 . T G 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:10:0,74:0,42:0,32:-95.1:PASS:370,223,0 chr1 225565015 . T C 2613 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:6:0,62:0,37:0,25:-77.3:PASS:370,187,0 chr1 225565073 . C T 2526 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:19:0,50:0,23:0,27:-71.3:PASS:370,150,0 chr1 225569241 . T G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:201:201:80:13:1,79:1,26:0,53:-71.5:PASS:370,204,0 chr1 225607144 . C T 2805 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:5:0,63:0,24:0,39:-74.4:PASS:370,190,0 chr1 225609884 . A G 2312 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:12:0,37:0,17:0,20:-53.8:PASS:370,111,0 chr1 225611661 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:7:0,76:0,52:0,24:-74.2:PASS:370,229,0 chr1 225707033 . ATCCAGGCGTTCCTGCCGC A 2713 PASS CIGAR=1M18D;RU=TCCAGGCGTTCCTGCCGC;REFREP=3;IDREP=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:375:343:97:40,24:20,9:20,15:PASS:372,0,610 chr1 226026406 . A G 1019 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:98:30:17:8,22:3,9:5,13:-26.2:PASS:258,0,95 chr1 226032229 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:457:424:146:35:75,71:52,53:23,18:-29.5:PASS:370,0,370 chr1 226040404 . C T 263 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:127:21:4:10,11:6,3:4,8:-12.8:PASS:162,0,140 chr1 226055595 . G A 825 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:151:29:9:13,16:6,12:7,4:-13.1:PASS:189,0,151 chr1 226074563 . T G 1784 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:6:0,28:0,18:0,10:-37.6:PASS:370,84,0 chr1 226108200 . C T 148 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:19:7:11,8:8,6:3,2:-10.6:PASS:123,0,160 chr1 226352498 . T G 423 PASS SNVHPOL=9;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:222:61:10:31,30:21,22:10,8:-19.8:PASS:257,0,257 chr1 226474132 . G A 752 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:290:290:99:17:43,56:18,19:25,37:-34.7:PASS:370,0,287 chr1 226570840 . T C 1162 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:7:0,22:0,11:0,11:-40.3:PASS:351,66,0 chr1 226923264 . G A 691 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:145:28:6:13,15:10,9:3,6:-20.6:PASS:179,0,157 chr1 226923505 . G T 1500 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:9:0,18:0,13:0,5:-24:PASS:300,54,0 chr1 226923938 . A C 1116 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:5:0,18:0,8:0,10:-32.1:PASS:297,54,0 chr1 226924642 . C T 223 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:26:12:16,10:7,2:9,8:-9.1:PASS:120,0,184 chr1 226924875 . ACTGCCGCTG A 573 PASS CIGAR=1M9D;RU=CTGCCGCTG;REFREP=2;IDREP=1;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:39:39:9:3,5:1,0:2,5:PASS:91,0,36 chr1 227069677 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:14:0,61:0,39:0,22:-66.4:PASS:370,184,0 chr1 227069737 . C T 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:22:0,58:0,20:0,38:-63.1:PASS:370,175,0 chr1 227071525 . C T 1450 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:9:0,27:0,7:0,20:-30.1:PASS:370,81,0 chr1 227149203 . G A 192 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:104:26:6:14,11:7,2:7,9:-9.1:PASS:139,0,172 chr1 227172290 . C T 293 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:68:14:38,30:31,26:7,4:-14:PASS:227,0,316 chr1 227174210 . T C 371 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:224:59:19:29,30:15,14:14,16:-26.9:PASS:259,0,249 chr1 227182575 . A G 2212 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:8:0,52:0,23:0,29:-71.9:PASS:370,157,0 chr1 227216662 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:13:0,77:0,42:0,35:-102.8:PASS:370,232,0 chr1 227216775 . C T 1780 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:223:73:9:40,33:21,16:19,17:-27.5:PASS:258,0,334 chr1 227504794 . T C 1258 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:229:63:5:31,32:20,21:11,11:-23:PASS:264,0,261 chr1 227920103 . G A 271 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:112:21:12:11,10:10,8:1,2:-13.3:PASS:147,0,137 chr1 227935444 . A G 413 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:144:34:13:14,20:9,12:5,8:-22.3:PASS:220,0,141 chr1 228113163 . A G 126 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:57:10:3:3,7:0,5:3,2:-10.3:PASS:137,0,54 chr1 228238607 . C T 551 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:26:13:15,11:2,3:13,8:-15.9:PASS:146,0,174 chr1 228346620 . A G 17 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:17:5:3:3,2:3,2:0,0:0:PASS:52,0,57 chr1 228362682 . G A 206 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:81:21:8:13,8:6,3:7,5:-11.8:PASS:116,0,175 chr1 228399766 . T C 1204 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:171:44:13:22,22:1,2:21,20:-13.3:PASS:212,0,169 chr1 228402047 . A G 1985 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:56:14:33,23:14,9:19,14:-17.9:PASS:185,0,295 chr1 228402121 . A G 2179 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:203:72:18:40,32:14,11:26,21:-22:PASS:237,0,332 chr1 228402508 . C T 202 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:121:23:9:12,11:4,5:8,6:-17.3:PASS:155,0,150 chr1 228407260 . G A 219 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:35:11:23,12:10,3:13,9:-9:PASS:118,0,252 chr1 228412227 . T C 364 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:134:134:29:11:11,18:9,11:2,7:-23.9:PASS:217,0,131:228412227 chr1 228412228 . G A 211 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:146:113:28:12:16,12:11,3:5,9:-8.3:PASS:148,0,192:228412227 chr1 228412308 . G A 180 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:148:115:36:5:22,14:7,4:15,10:-13.8:PASS:149,0,231 chr1 228431095 . A G 369 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:60:15:33,27:7,3:26,24:-10.8:PASS:213,0,284 chr1 228433217 . A G 293 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:151:33:11:14,19:7,6:7,13:-18.6:PASS:210,0,148 chr1 228434395 . T C 307 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:118:22:11:8,14:5,5:3,9:-14.7:PASS:173,0,115 chr1 228434467 . T C 219 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:131:26:9:12,14:4,3:8,11:-12.3:PASS:166,0,138 chr1 228444565 . T A 1332 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:46:46:21:10:0,20:0,1:0,19:-8.5:PASS:303,60,0 chr1 228461129 . A G 337 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:125:34:13:11,23:5,12:6,11:-27.6:PASS:251,0,122 chr1 228464248 . T G 747 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:365:365:113:54:54,59:45,35:9,24:-48.3:PASS:370,0,362 chr1 228464276 . T C 825 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:386:386:123:70:59,64:50,37:9,27:-47.7:PASS:370,0,370 chr1 228465346 . A G 321 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:166:35:11:16,19:7,13:9,6:-17:PASS:202,0,169 chr1 228471379 . G C 333 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:192:59:10:32,27:7,5:25,22:-16:PASS:226,0,280 chr1 228480282 . A G 338 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:44:12:29,15:15,10:14,5:-11.8:PASS:140,0,296 chr1 228482028 . G C 268 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:44:4:28,16:15,5:13,11:-10.9:PASS:146,0,277 chr1 228486404 . C T 276 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:23:14:14,9:6,4:8,5:-15.3:PASS:135,0,180 chr1 228494696 . G A 367 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:171:44:9:22,22:14,9:8,13:-18.1:PASS:206,0,213 chr1 228496014 . G A 377 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:144:41:12:16,25:7,4:9,21:-12.7:PASS:254,0,141 chr1 228503677 . A G 373 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:195:47:9:21,26:8,8:13,18:-21.2:PASS:245,0,193 chr1 228504472 . T C 525 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:62:16:32,30:21,14:11,16:-22.9:PASS:247,0,272 chr1 228504591 . C A 104 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:61:50:25:36,14:9,6:27,8:-6:PASS:95,0,349 chr1 228504669 . G A 201 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:64:44:14:31,13:8,2:23,11:-6.2:PASS:99,0,313 chr1 228505204 . G A 121 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:79:24:7:16,8:11,6:5,2:-10.5:PASS:114,0,202 chr1 228505257 . G A 846 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:110:27:11:15,12:12,9:3,3:-15.2:PASS:145,0,186 chr1 228505668 . C G 196 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:36:12:24,12:18,9:6,3:-12.8:PASS:118,0,255 chr1 228505699 . T C 226 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:32:20:22,10:15,7:7,3:-12.5:PASS:112,0,238 chr1 228505739 . G A 192 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:82:49:36:13:27,9:14,7:13,2:-4.4:PASS:84,0,280 chr1 228506661 . G A 180 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:84:18:8:11,7:7,5:4,2:-11.2:PASS:119,0,154 chr1 228509427 . A G 755 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:278:278:90:28:41,49:28,33:13,16:-31.8:PASS:370,0,275 chr1 228525008 . G A 422 PASS SNVHPOL=9;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:125:47:79,45:38,13:41,32:-7.8:PASS:223,0,370 chr1 228526011 . C T 257 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:158:36:11:18,18:6,8:12,10:-21.8:PASS:192,0,182 chr1 228547901 . C T 1654 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:55:17:31,24:12,11:19,13:-21.8:PASS:200,0,283 chr1 228559967 . C T 1309 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:155:34:16:16,18:4,5:12,13:-17.1:PASS:190,0,166 chr1 228559994 . C T 1061 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:29:13:16,13:3,4:13,9:-17.2:PASS:150,0,185 chr1 228560139 . A G 1113 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:160:34:9:16,18:10,13:6,5:-15.3:PASS:195,0,173 chr1 228560592 . A G 2213 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:301:301:99:25:44,55:30,35:14,20:-40.6:PASS:370,0,298 chr1 228560700 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:336:336:125:47:1,124:1,69:0,55:-152.7:PASS:370,339,0 chr1 228612838 . G T 2555 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:24:0,43:0,32:0,11:-40.9:PASS:370,129,0 chr1 228698143 . G A 938 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:155:36:6:14,22:11,14:3,8:-24:PASS:236,0,152 chr1 228699619 . G A 819 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:130:25:2:12,13:4,3:8,10:-12.9:PASS:165,0,160 chr1 228879367 . C T 1464 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:258:68:10:32,36:13,13:19,23:-28:PASS:307,0,256 chr1 229622162 . A G 706 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:59:6:37,22:26,14:11,8:-18:PASS:162,0,336 chr1 229623338 . T C 499 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:174:48:5:25,23:8,8:17,15:-20.2:PASS:208,0,239 chr1 229631734 . T C 610 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:261:261:72:12:33,39:12,15:21,24:-31.7:PASS:323,0,258 chr1 229635521 . A G 657 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:206:51:5:24,27:12,15:12,12:-25.3:PASS:241,0,212 chr1 229683264 . G A 360 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:119:24:7:9,15:7,9:2,6:-20.1:PASS:193,0,116 chr1 229730452 . G A 2143 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:24:0,41:0,15:0,26:-48.6:PASS:370,123,0 chr1 229738170 . T G 2909 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:13:0,70:0,39:0,31:-91.7:PASS:370,211,0 chr1 229738236 . G A 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:18:0,76:0,47:0,29:-87.2:PASS:370,229,0 chr1 229772693 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:15:0,66:0,36:0,30:-88.9:PASS:370,199,0 chr1 229790048 . A G 1983 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:35:3:1,34:0,22:1,12:-31.9:PASS:370,69,0 chr1 230492801 . C T 272 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:43:14:26,17:12,13:14,4:-8.9:PASS:160,0,265 chr1 230841687 . T C 1702 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:18:0,37:0,18:0,19:-59:PASS:370,111,0 chr1 230845794 . A G 1515 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:193:50:8:23,27:15,14:8,13:-27.6:PASS:258,0,190 chr1 231376806 . G C 456 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:58:17:6:11,6:5,5:6,1:-4.5:PASS:93,0,164 chr1 231401902 . G A 2874 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:282:101:11:43,58:21,30:22,28:-50.2:PASS:370,0,279 chr1 231488524 . C T 743 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:426:415:126:10:62,64:38,46:24,18:-30:PASS:370,0,370 chr1 231830295 . G A 988 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:44:11:26,18:16,12:10,6:-16.6:PASS:166,0,253 chr1 231954145 . G A 1971 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:822:822:336:45:153,182:59,89:94,93:-126:PASS:370,0,370 chr1 232534957 . T C 296 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:122:30:5:17,13:12,9:5,4:-16:PASS:157,0,194 chr1 232650750 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:288:288:98:12:0,97:0,48:0,49:-137.7:PASS:370,292,0 chr1 232650867 . C T 793 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:280:247:102:17:58,44:28,21:30,23:-30.3:PASS:282,0,370 chr1 232941153 . C T 1709 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:14:0,30:0,11:0,19:-39.7:PASS:370,90,0 chr1 232942028 . A G 446 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:295:262:82:7:43,39:23,23:20,16:-28.2:PASS:297,0,345 chr1 233091463 . T A 1014 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:162:36:9:15,21:8,14:7,7:-18.9:PASS:227,0,159 chr1 233121884 . T C 394 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:159:42:18:17,25:9,6:8,19:-15.6:PASS:247,0,156 chr1 233134086 . C T 647 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:28:9:14,14:8,9:6,5:-16.6:PASS:167,0,170 chr1 233225848 . T C 265 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:40:6:24,16:15,9:9,7:-17.8:PASS:161,0,250 chr1 233394248 . T C 2087 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:250:250:70:31:32,38:10,19:22,19:-32.8:PASS:320,0,247 chr1 234041422 . G C 303 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:53:13:29,24:11,14:18,10:-17.3:PASS:207,0,261 chr1 234509259 . G C 755 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:67:37:13:26,11:18,8:8,3:-10.3:PASS:102,0,263 chr1 234541801 . A G 1581 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:221:76:7:42,34:10,15:32,19:-26.8:PASS:256,0,345 chr1 234569192 . T C 278 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:107:33:5:19,14:14,12:5,2:-8.4:PASS:142,0,218 chr1 234582651 . T C 1226 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:236:66:7:33,33:7,12:26,21:-29.2:PASS:270,0,273 chr1 234584231 . C T 878 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:34:2:20,14:14,8:6,6:-16.8:PASS:155,0,215 chr1 234603322 . A T 1453 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:240:69:6:31,38:14,23:17,15:-28.3:PASS:320,0,237 chr1 234606998 . A G 679 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:32:1:18,14:5,5:13,9:-17.4:PASS:153,0,206 chr1 234743237 . G A 440 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:42:22:24,18:7,5:17,13:-15.1:PASS:167,0,238 chr1 235324298 . T C 1434 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:11:0,33:0,16:0,17:-52.6:PASS:370,99,0 chr1 235383188 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:332:332:125:19:1,124:1,59:0,65:-157.1:PASS:370,335,0 chr1 235392546 . T C 2231 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:191:191:68:11:0,67:0,50:0,17:-56.1:PASS:370,202,0 chr1 235715523 . A G 2310 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:10:0,42:0,8:0,34:-30.9:PASS:370,126,0 chr1 235940450 . C T 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:256:256:86:9:0,86:0,54:0,32:-96.8:PASS:370,259,0 chr1 235945294 . T C 2950 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:217:217:73:11:0,73:0,28:0,45:-83.4:PASS:370,220,0 chr1 235971763 . A G 274 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:114:29:8:17,12:6,5:11,7:-17.1:PASS:149,0,202 chr1 235972435 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:313:313:105:8:0,105:0,63:0,42:-122.6:PASS:370,316,0 chr1 235972867 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:256:256:86:7:0,86:0,54:0,32:-96.4:PASS:370,259,0 chr1 236141174 . T C 564 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:81:21:1:8,13:8,11:0,2:-14:PASS:175,0,78 chr1 236144951 . A G 909 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:27:4:15,12:8,7:7,5:-16:PASS:156,0,177 chr1 236175339 . T C 1172 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:53:13:33,20:7,13:26,7:-7:PASS:163,0,305 chr1 236208773 . C T 1765 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:294:261:79:8:40,39:25,27:15,12:-23.2:PASS:295,0,312 chr1 236212038 . G A 844 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:123:33:11:19,14:13,4:6,10:-10.5:PASS:158,0,205 chr1 236381825 . G C 1709 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:1:0,38:0,18:0,20:-58.6:PASS:370,114,0 chr1 236413230 . T A 1531 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:239:239:65:6:30,35:18,15:12,20:-28.3:PASS:303,0,236 chr1 236557771 . G A 1873 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:122:58:8:36,22:17,8:19,14:-13.9:PASS:157,0,334 chr1 236645670 . C T 380 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:50:7:30,20:14,10:16,10:-19.9:PASS:173,0,286 chr1 236700807 . T A 187 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:104:71:52:5:35,17:26,9:9,8:-7.6:PASS:105,0,337 chr1 236700823 . T C 165 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:72:51:7:34,17:24,7:10,10:-4.1:PASS:107,0,329 chr1 236700857 . C T 387 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:51:5:31,20:20,5:11,15:-7.2:PASS:170,0,291 chr1 236702209 . C T 364 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:106:73:44:10:29,15:17,12:12,3:-5.1:PASS:107,0,286:236702209 chr1 236702210 . A G 364 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:115:82:44:11:28,16:15,13:13,3:-4.4:PASS:117,0,274:236702209 chr1 236702374 . G A 455 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:51:4:31,20:11,6:20,14:-14.2:PASS:164,0,300 chr1 236706862 . G C 359 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:48:28:1:20,8:11,7:9,1:-2.5:PASS:83,0,245 chr1 236711323 . T C 411 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:117:35:6:21,14:15,8:6,6:-16.5:PASS:151,0,227 chr1 236716959 . C T 432 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:42:8:27,15:18,8:9,7:-14.8:PASS:148,0,268 chr1 236717926 . T C 523 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:56:9:37,19:21,14:16,5:-9.3:PASS:146,0,355 chr1 236718620 . T C 626 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:246:61:7:29,32:23,22:6,10:-26.7:PASS:282,0,250 chr1 236719135 . T C 2681 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:13:0,61:0,34:0,27:-81:PASS:370,184,0 chr1 236719193 . A G 779 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:233:66:11:30,36:8,10:22,26:-25.3:PASS:312,0,230 chr1 236721610 . G A 545 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:58:14:36,22:20,16:16,6:-12:PASS:169,0,324 chr1 236721660 . T C 648 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:59:12:32,27:14,17:18,10:-18.1:PASS:228,0,274 chr1 236721731 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:18:0,79:0,45:0,34:-99.9:PASS:370,238,0 chr1 236746443 . C T 484 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:45:7:26,18:12,10:14,8:-16.6:PASS:170,0,256 chr1 236748505 . T C 924 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:387:354:117:9:61,56:31,28:30,28:-43.9:PASS:370,0,370 chr1 236749649 . T C 765 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:58:4:33,25:14,16:19,9:-16.1:PASS:207,0,296 chr1 236755837 . C T 581 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:57:10:32,25:21,16:11,9:-20.9:PASS:213,0,282 chr1 236758887 . T C 600 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:52:4:27,25:20,18:7,7:-19.3:PASS:223,0,238 chr1 236767330 . A G 336 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:42:8:21,21:9,9:12,12:-22.4:PASS:202,0,208 chr1 236882303 . T C 2350 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:8:0,49:0,23:0,26:-68.6:PASS:370,147,0 chr1 236883421 . C T 1774 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:222:54:5:25,29:14,17:11,12:-26.6:PASS:265,0,220 chr1 236899899 . TC T 1186 PASS CIGAR=1M1D;RU=C;REFREP=5;IDREP=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:228:228:46:19,24:8,14:11,10:PASS:377,0,225 chr1 236925844 . G A 511 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:22:5:13,9:5,2:8,7:-10.5:PASS:128,0,167 chr1 237617757 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:15:0,74:0,58:0,16:-53.2:PASS:370,223,0 chr1 237711797 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:280:280:94:20:0,94:0,57:0,37:-108.1:PASS:370,283,0 chr1 237801770 . T C 2451 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:3:0,52:0,18:0,34:-55.5:PASS:370,156,0 chr1 237814783 . C T 2766 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:3:0,57:0,24:0,33:-75.1:PASS:370,172,0 chr1 237863718 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:581:581:194:82:0,194:0,116:0,78:-213:PASS:370,370,0 chr1 237881770 . C T 2843 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:217:217:73:1:0,73:0,47:0,26:-79.4:PASS:370,220,0 chr1 237890437 . C T 2033 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:8:0,30:0,20:0,10:-37.5:PASS:370,90,0 chr1 240255568 . GGGC G 2426 PASS CIGAR=1M3D;RU=GGC;REFREP=5;IDREP=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:248:248:53:19,28:16,24:3,4:PASS:499,0,245 chr1 240256822 . C A 854 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:17:4:9,8:2,3:7,5:-13.5:PASS:124,0,132 chr1 241712134 . C T 329 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:40:1:25,15:13,13:12,2:-4.2:PASS:141,0,262 chr1 241755348 . C T 1038 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:274:274:82:9:39,43:24,27:15,16:-31.7:PASS:339,0,271 chr1 241907817 . T C 296 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:35:4:19,16:9,5:10,11:-13.9:PASS:171,0,207 chr1 242030151 . A G 2633 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:304:304:102:12:0,102:0,85:0,17:-55.4:PASS:370,307,0 chr1 242042301 . G A 3070 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:367:334:118:12:63,55:28,27:35,28:-40.2:PASS:369,0,370 chr1 242042545 . A G 2659 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:18:0,83:0,28:0,55:-84.9:PASS:370,250,0 chr1 242045275 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:1394:1394:469:55:0,468:0,232:0,236:-619.9:PASS:370,370,0 chr1 242121377 . T G 771 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:202:72:8:41,31:19,15:22,16:-26.4:PASS:237,0,345 chr1 242121540 . G A 290 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:119:41:17:25,16:9,6:16,10:-15.8:PASS:153,0,259 chr1 242121796 . G T 286 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:45:13:28,17:11,9:17,8:-13.7:PASS:146,0,269 chr1 243354791 . C T 171 PASS SNVHPOL=2;MQ=40;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:72:39:27:3:21,6:6,2:15,4:-8.3:PASS:74,0,257 chr1 243493907 . A T 1269 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:343:310:116:17:64,52:43,32:21,20:-34.7:PASS:344,0,370 chr1 244724277 . C T 645 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:364:331:133:13:74,59:30,24:44,35:-36.9:PASS:366,0,370 chr1 245530282 . G A 1167 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:14:0,64:0,33:0,31:-91.9:PASS:370,193,0 chr1 245704130 . G C 339 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:148:29:7:13,16:8,9:5,7:-20.9:PASS:185,0,149 chr1 245851304 . A G 1580 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:8:0,27:0,9:0,18:-34.1:PASS:370,81,0 chr1 245851589 . C A 170 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:121:19:10:8,11:3,3:5,8:-13.7:PASS:156,0,131 chr1 246021941 . T C 2439 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:9:0,44:0,18:0,26:-58.4:PASS:370,132,0 chr1 246670481 . C G 392 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:60:11:4:6,5:2,1:4,4:-6.4:PASS:95,0,119 chr1 246707858 . A G 428 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:67:1:34,33:19,20:15,13:-26.2:PASS:268,0,283 chr1 246714587 . G A 1849 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:308:275:92:8:48,44:19,17:29,27:-30.2:PASS:310,0,360 chr1 246720798 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:239:239:84:6:0,83:0,30:0,53:-89.8:PASS:370,250,0 chr1 246755124 . T C 2141 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:16:0,69:0,25:0,44:-76.5:PASS:370,208,0 chr1 247006051 . G C 235 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:37:5:19,18:10,10:9,8:-20.1:PASS:187,0,200 chr1 247024326 . G A 548 PASS SNVHPOL=3;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:315:286:82:6:41,41:19,24:22,17:-28.9:PASS:321,0,315 chr1 247048834 . T C 2324 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:247:214:67:3:36,31:28,25:8,6:-17.5:PASS:249,0,296 chr1 247151557 . A G 1000 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:217:54:3:26,28:2,9:24,19:-27.2:PASS:252,0,227 chr1 247162658 . C T 1155 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:117:35:12:21,14:14,6:7,8:-13.3:PASS:152,0,220 chr1 247275218 . C G 331 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:6:0,13:0,12:0,1:-9.4:PASS:226,39,0 chr1 247419509 . T C 2795 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:5:0,89:0,48:0,41:-118.8:PASS:370,268,0 chr1 247419664 . C T 2973 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:322:322:108:12:0,108:0,48:0,60:-139:PASS:370,325,0 chr1 247420421 . C T 988 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:234:64:10:32,32:2,7:30,25:-23.1:PASS:269,0,267 chr1 247587477 . G A 768 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:285:252:85:13:46,39:23,12:23,27:-18.7:PASS:286,0,357 chr1 247587531 . A G 2033 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:17:0,72:0,30:0,42:-89.4:PASS:370,217,0 chr1 247614693 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:18:0,75:0,31:0,44:-91.5:PASS:370,226,0 chr1 247614896 . A C 2054 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:279:247:70:20:35,35:11,21:24,14:-20.9:PASS:282,0,284 chr1 247654993 . T C 1137 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:5:0,59:0,27:0,32:-81.9:PASS:370,178,0 chr1 247655275 . T C 794 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:5:0,30:0,17:0,13:-44.8:PASS:370,90,0 chr1 247695612 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:384:384:130:23:0,129:0,63:0,66:-177.9:PASS:370,370,0 chr1 247695756 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:361:361:121:28:0,121:0,57:0,64:-159.1:PASS:370,364,0 chr1 247751731 . C G 1341 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:270:237:100:18:58,42:28,29:30,13:-13.9:PASS:272,0,370 chr1 247752019 . G C 2873 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:317:93:15:44,49:16,25:28,24:-37.9:PASS:370,0,314 chr1 247752161 . T C 1136 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:309:276:87:11:45,42:16,23:29,19:-27.4:PASS:311,0,347 chr1 247752367 . A G 1550 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:301:272:79:9:39,40:23,25:16,15:-28.2:PASS:307,0,299 chr1 247769062 . A G 676 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:319:286:88:21:45,43:31,25:14,18:-35.2:PASS:321,0,342 chr1 247769752 . A G 1499 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:249:99:11:56,43:29,17:27,26:-24.5:PASS:284,0,370 chr1 247835674 . G A 1621 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:290:263:77:14:38,39:22,19:16,20:-32.2:PASS:298,0,288 chr1 247835908 . T A 1703 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:281:248:90:11:50,40:19,18:31,22:-32.3:PASS:283,0,370 chr1 247836008 . G A 1920 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:248:97:15:39,58:20,39:19,19:-33.5:PASS:370,0,245 chr1 247836207 . T A 2197 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:383:350:115:17:59,56:31,25:28,31:-36.7:PASS:370,0,370 chr1 247875415 . A G 704 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:412:379:126:21:64,62:21,24:43,38:-41.9:PASS:370,0,370 chr1 247921100 . T G 3070 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:464:464:148:15:71,77:31,38:40,39:-59:PASS:370,0,370 chr1 247921352 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:419:386:127:23:65,62:31,31:34,31:-48.1:PASS:370,0,370 chr1 247978135 . C A 395 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:158:56:8:33,23:22,17:11,6:-15:PASS:192,0,306 chr1 247978319 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:11:0,83:0,41:0,42:-118.3:PASS:370,250,0 chr1 247978541 . AAGG A 3070 PASS CIGAR=1M3D;RU=AGG;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:772:772:110:54,52:25,30:29,22:PASS:883,0,769 chr1 247978996 . A G 1637 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:356:324:98:5:49,49:17,11:32,38:-20.5:PASS:359,0,361 chr1 248004614 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:319:319:107:9:0,107:0,42:0,65:-121.8:PASS:370,322,0 chr1 248004687 . C G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:80:13:0,78:0,43:0,35:-103.1:PASS:370,235,0 chr1 248004775 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:27:0,61:0,25:0,36:-77.6:PASS:370,184,0 chr1 248004848 . G C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:8:0,78:0,32:0,46:-93.7:PASS:370,235,0 chr1 248004877 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:146:146:63:19:1,62:0,26:1,36:-80.1:PASS:370,149,0 chr1 248004884 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:9:0,74:0,34:0,40:-101.6:PASS:370,223,0 chr1 248023966 . C T 817 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:395:362:151:25:85,66:52,34:33,32:-40.8:PASS:370,0,370 chr1 248039451 . C T 339 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:68:8:39,29:26,17:13,12:-24.5:PASS:218,0,333 chr1 248039713 . A G 2094 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:13:0,72:0,33:0,39:-95.9:PASS:370,217,0 chr1 248059476 . A C 894 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:158:51:14:29,22:15,13:14,9:-18.6:PASS:192,0,255 chr1 248059779 . G GA 858 PASS CIGAR=1M1I;RU=A;REFREP=2;IDREP=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:474:469:70:35,31:13,17:22,14:PASS:503,0,471 chr1 248084434 . G A 1137 PASS SNVHPOL=4;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:132:70:18:21,48:3,19:18,29:-45.6:PASS:370,0,129 chr1 248084464 . T C 1855 PASS SNVHPOL=4;MQ=52;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:14:0,54:0,8:0,46:-31.7:PASS:370,163,0 chr1 248084471 . A G 797 PASS SNVHPOL=5;MQ=50;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:49:16:7,42:0,7:7,35:-29.2:PASS:370,27,0 chr1 248084511 . T C 989 PASS SNVHPOL=3;MQ=44;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:6:0,34:0,1:0,33:-9.4:PASS:370,102,0 chr1 248084631 . A C 255 PASS SNVHPOL=3;MQ=37;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:16:16:17:10:1,16:1,0:0,16:7.5:PASS:193,18,0 chr1 248084747 . A C 291 PASS SNVHPOL=3;MQ=39;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:4:0,7:0,2:0,5:-11.6:PASS:157,21,0 chr1 248084854 . A G 194 PASS SNVHPOL=6;MQ=39;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:64:34:9:23,11:17,9:6,2:-8.1:PASS:99,0,248 chr1 248084909 . T G 85 PASS SNVHPOL=2;MQ=38;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:53:40:5:30,10:22,7:8,3:-8.7:PASS:88,0,312 chr1 248084980 . G T 274 PASS SNVHPOL=3;MQ=41;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:140:48:6:28,20:19,16:9,4:-10.8:PASS:175,0,260 chr1 248085011 . C G 1019 PASS SNVHPOL=3;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:215:57:9:26,31:21,24:5,7:-21.7:PASS:276,0,212 chr1 248085108 . C T 650 PASS SNVHPOL=3;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:81:16:44,37:25,31:19,6:-8.3:PASS:268,0,322 chr1 248085124 . G A 1155 PASS SNVHPOL=2;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:287:286:84:18:41,43:31,23:10,20:-32.5:PASS:326,0,284 chr1 248112627 . T C 1416 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:275:275:120:20:47,73:25,36:22,37:-62.7:PASS:370,0,272 chr1 248112745 . G T 3070 PASS SNVHPOL=3;MQ=55;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:286:286:96:18:0,96:0,39:0,57:-112.6:PASS:370,289,0 chr1 248112762 . T C 3070 PASS SNVHPOL=3;MQ=55;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:298:298:100:12:0,100:0,35:0,65:-102.1:PASS:370,301,0 chr1 248112763 . G A 3070 PASS SNVHPOL=3;MQ=55;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:274:274:92:19:0,92:0,26:0,66:-78.3:PASS:370,277,0 chr1 248112771 . C T 3070 PASS SNVHPOL=5;MQ=55;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:310:310:104:11:0,104:0,36:0,68:-104.3:PASS:370,313,0 chr1 248112809 . A G 3070 PASS SNVHPOL=3;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:316:316:106:16:0,106:0,42:0,64:-119.6:PASS:370,319,0 chr1 248112836 . A G 3070 PASS SNVHPOL=4;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:274:274:92:14:0,92:0,31:0,61:-90:PASS:370,277,0 chr1 248112915 . A G 1279 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:284:279:76:18:37,39:16,18:21,21:-34.6:PASS:316,0,281 chr1 248113026 . T A 2906 PASS SNVHPOL=3;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:128:128:45:15:0,44:0,23:0,21:-63.3:PASS:370,132,0 chr1 248113040 . A G 3070 PASS SNVHPOL=3;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:10:0,50:0,22:0,28:-68.9:PASS:370,150,0 chr1 248128929 . G A 496 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:99:17:61,38:23,21:38,17:-16.3:PASS:225,0,370 chr1 248129240 . G A 2961 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:342:309:123:15:69,54:42,28:27,26:-36:PASS:344,0,370 chr1 248202211 . A G 795 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:261:261:112:17:44,68:19,35:25,33:-54.8:PASS:370,0,258 chr1 248436310 . G A 848 PASS SNVHPOL=4;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:432:399:154:23:83,71:39,37:44,34:-44.8:PASS:370,0,370 chr1 248436611 . G A 2974 PASS SNVHPOL=2;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:376:343:124:26:66,58:41,32:25,26:-42.1:PASS:370,0,370 chr1 248436616 . A G 3070 PASS SNVHPOL=4;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:311:311:110:44:48,62:25,35:23,27:-46.2:PASS:370,0,308 chr1 248436805 . T G 3070 PASS SNVHPOL=3;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:188:114:30:38,76:5,8:33,68:-23.1:PASS:370,0,185 chr1 248457979 . C A 3070 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:397:397:134:17:63,71:39,44:24,27:-46:PASS:370,0,370 chr1 248487300 . C T 3070 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:307:274:120:14:70,50:41,23:29,27:-27:PASS:309,0,370 chr1 248487338 . C A 3070 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:238:111:20:67,44:36,22:31,22:-29.8:PASS:273,0,370 chr1 248487638 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:88:18:53,35:24,21:29,14:-18:PASS:235,0,370 chr1 248487768 . A G 2700 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:263:230:73:19:39,34:13,16:26,18:-27.9:PASS:264,0,311 chr1 248512094 . C T 1902 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:250:217:63:11:32,31:21,21:11,10:-20.6:PASS:252,0,263 chr1 248512637 . C T 2414 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:272:238:96:17:55,41:27,24:28,17:-24.1:PASS:273,0,370 chr1 248512749 . G A 2605 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:244:84:18:44,40:25,17:19,23:-23.5:PASS:278,0,336 chr1 248512767 . G T 2592 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:72:28:43,29:23,10:20,19:-11.2:PASS:184,0,365 chr1 248525638 . CA C 3070 PASS CIGAR=1M1D;RU=A;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:1045:1045:185:78,98:47,61:31,37:PASS:999,0,999 chr1 248550976 . T G 767 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:206:53:10:26,27:20,17:6,10:-25.6:PASS:241,0,233 chr1 248569369 . A G 1167 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:284:92:7:47,45:27,25:20,20:-36:PASS:319,0,356 chr1 248616704 . CTGCTGCG C 606 PASS CIGAR=1M7D;RU=TGCTGCG;REFREP=1;IDREP=0;MQ=38;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:399:356:64:36,25:21,0:15,25:PASS:396,0,543 chr1 248616749 . C G 169 PASS SNVHPOL=3;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:55:4:36,19:24,3:12,16:3:PASS:120,0,328 chr1 248616883 . T A 62 PASS SNVHPOL=2;MQ=38;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:62:34:12:25,9:20,6:5,3:-8.4:PASS:97,0,273 chr1 248617028 . T C 16 PASS SNVHPOL=3;MQ=47;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:16:47:21:34,13:21,13:13,0:9:PASS:50,0,333 chr1 248685253 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:13:0,70:0,33:0,37:-98.7:PASS:370,211,0 chr1 248685499 . C T 605 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:355:326:98:18:49,49:26,26:23,23:-39.8:PASS:361,0,354 chr1 248722722 . T C 726 PASS SNVHPOL=2;MQ=20;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:4:0,20:0,18:0,2:-13.9:PASS:303,60,0 chr1 248737259 . C G 1551 PASS SNVHPOL=3;MQ=44;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:9:0,47:0,42:0,5:-23.3:PASS:370,141,0 chr1 248789504 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:351:351:120:19:0,119:0,75:0,44:-125.2:PASS:370,358,0 chr1 248790075 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:385:385:129:27:0,129:0,56:0,73:-158.2:PASS:370,370,0 chr1 248801592 . C T 906 PASS SNVHPOL=3;MQ=46;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:23:23:35:17:4,31:0,28:4,3:-1.2:PASS:370,26,0 chr1 248801602 . T TCA 1540 PASS CIGAR=1M2I;RU=CA;REFREP=2;IDREP=3;MQ=43;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:104:104:50:12,34:4,30:8,4:PASS:652,0,101 chr1 248801611 . C T 900 PASS SNVHPOL=2;MQ=41;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:51:51:41:9:9,32:1,27:8,5:-14.8:PASS:338,0,48 chr1 248801633 . A G 878 PASS SNVHPOL=3;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:41:41:38:10:9,29:0,24:9,5:-15.3:PASS:314,0,38 chr1 248801778 . A T 651 PASS SNVHPOL=2;MQ=24;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:113:34:11:11,23:5,12:6,11:-27.4:PASS:244,0,110 chr1 248801897 . G A 273 PASS SNVHPOL=2;MQ=28;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:54:7:32,22:9,12:23,10:-14.6:PASS:181,0,288 chr1 248801944 . TCAGCACG T 1814 PASS CIGAR=1M7D;RU=CAGCACG;REFREP=1;IDREP=0;MQ=28;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:416:416:56:29,28:21,9:8,19:PASS:476,0,413 chr1 248802249 . T TAGA 2762 PASS CIGAR=1M3I;RU=AGA;REFREP=2;IDREP=3;MQ=41;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:154:154:67:2,64:1,30:1,34:PASS:999,157,0 chr1 248802469 . C T 344 PASS SNVHPOL=2;MQ=30;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:5:0,13:0,1:0,12:-9.4:PASS:217,39,0 chr1 248813547 . G C 1992 PASS SNVHPOL=2;MQ=42;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:143:143:59:4:1,58:1,3:0,55:-10.3:PASS:370,146,0 chr1 248813827 . T C 647 PASS SNVHPOL=3;MQ=30;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:2:0,12:0,8:0,4:-17.2:PASS:206,36,0 chr1 248813901 . A T 710 PASS SNVHPOL=3;MQ=31;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:2:0,15:0,14:0,1:-9.4:PASS:238,45,0 chr1 248814052 . T A 753 PASS SNVHPOL=2;MQ=40;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:8:0,18:0,13:0,5:-24.7:PASS:295,54,0 chr1 248814080 . A C 1141 PASS SNVHPOL=5;MQ=44;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:9:0,23:0,10:0,13:-37.2:PASS:346,69,0 chr1 248814126 . G A 763 PASS SNVHPOL=3;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:155:50:5:19,31:3,11:16,20:-31.1:PASS:291,0,152 chr1 248845097 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:256:256:86:22:0,86:0,40:0,46:-115.3:PASS:370,259,0 chr1 248845411 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:412:412:138:19:0,138:0,80:0,58:-160.7:PASS:370,370,0 chr1 248845458 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:430:430:144:21:0,144:0,75:0,69:-192.3:PASS:370,370,0 chr1 248845471 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:415:415:139:23:0,139:0,71:0,68:-189.6:PASS:370,370,0 chr1 248845499 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:397:397:133:24:0,133:0,55:0,78:-156.8:PASS:370,370,0 chr1 249150116 . G C 361 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:71:15:42,29:11,11:31,18:-23.7:PASS:208,0,354 chr2 45895 . A G 600 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:4:0,6:0,2:0,4:-13.1:PASS:154,18,0 chr2 242800 . T C 721 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:376:376:116:12:55,61:38,36:17,25:-48.5:PASS:370,0,370 chr2 677295 . C T 554 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:200:49:17:22,27:14,19:8,8:-20:PASS:244,0,198 chr2 1079320 . C T 1766 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:23:0,56:0,28:0,28:-82.7:PASS:370,169,0 chr2 1168781 . C A 314 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:45:10:25,20:20,10:5,10:-16.3:PASS:188,0,236 chr2 1271230 . A G 632 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:316:283:89:12:45,43:22,24:23,19:-31.5:PASS:318,0,344 chr2 1320143 . C T 483 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:261:70:11:34,36:14,16:20,20:-32.2:PASS:297,0,266 chr2 1481155 . G T 450 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:66:64:7:4:3,4:3,1:0,3:-6.6:PASS:102,0,63 chr2 1481231 . G C 683 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:3:0,9:0,6:0,3:-19.4:PASS:202,27,0 chr2 1520676 . T C 2011 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:291:258:78:39:40,38:29,20:11,18:-29.3:PASS:292,0,308 chr2 1647171 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:23:0,76:0,54:0,22:-67.7:PASS:370,229,0 chr2 1647216 . C T 470 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:258:225:72:28:38,34:19,19:19,15:-26.3:PASS:260,0,307 chr2 1652822 . T G 2020 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:11:0,44:0,25:0,19:-61.6:PASS:370,132,0 chr2 1664654 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:21:0,72:0,57:0,15:-50.3:PASS:370,217,0 chr2 1926437 . G T 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:14:0,64:0,36:0,28:-84.4:PASS:370,193,0 chr2 3392075 . T C 876 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:139:26:3:12,14:5,5:7,9:-17.6:PASS:174,0,150 chr2 3392295 . A G 791 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:72:36:16:21,15:16,15:5,0:3.5:PASS:107,0,224 chr2 3469463 . G C 1407 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:9:0,64:0,20:0,44:-64:PASS:370,193,0 chr2 3483205 . C T 1068 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:9:0,47:0,4:0,43:-20.8:PASS:370,141,0 chr2 3504687 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:11:0,69:0,30:0,39:-89.9:PASS:370,208,0 chr2 3673648 . G A 655 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:154:40:3:16,24:9,14:7,10:-25.2:PASS:250,0,151 chr2 3673680 . A G 230 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:45:5:29,16:12,8:17,8:-14.2:PASS:143,0,287 chr2 3685175 . T C 313 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:43:9:23,20:10,11:13,9:-20:PASS:197,0,235 chr2 3691071 . C T 463 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:168:49:14:27,22:14,11:13,11:-22.6:PASS:203,0,254 chr2 3691548 . A G 1523 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:237:237:77:22:34,43:11,16:23,27:-34:PASS:349,0,234 chr2 3749151 . GGAA G 3070 PASS CIGAR=1M3D;RU=GAA;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:575:544:82:44,35:24,23:20,12:PASS:572,0,647 chr2 6990020 . C T 508 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:47:11:29,18:9,13:20,5:-6.5:PASS:161,0,287 chr2 7005369 . A G 690 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:2:0,12:0,1:0,11:-9.4:PASS:217,36,0 chr2 7137067 . A G 1787 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:10:0,39:0,30:0,9:-34.1:PASS:370,117,0 chr2 7154632 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:289:289:97:19:0,97:0,55:0,42:-121.3:PASS:370,292,0 chr2 8926469 . G A 540 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:69:5:46,23:8,7:38,16:-15.6:PASS:144,0,370 chr2 8998971 . T C 1032 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:323:290:91:10:48,43:24,22:24,21:-36.6:PASS:324,0,368 chr2 9013424 . C T 884 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:271:75:7:35,40:14,9:21,31:-18.5:PASS:327,0,268 chr2 9491017 . C T 2251 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:14:0,49:0,15:0,34:-48.8:PASS:370,147,0 chr2 9520874 . C T 480 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:25:0:13,12:8,9:5,3:-13.9:PASS:160,0,171 chr2 9528536 . G C 1541 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:8:0,41:0,22:0,19:-62.4:PASS:370,123,0 chr2 9588338 . T C 731 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:285:252:75:10:38,37:31,25:7,12:-28.1:PASS:286,0,301 chr2 9634856 . A G 2625 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:8:0,33:0,18:0,15:-50.3:PASS:370,99,0 chr2 10045014 . C T 3070 PASS SNVHPOL=9;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:301:301:101:6:0,101:0,66:0,35:-102.1:PASS:370,304,0 chr2 10045024 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:298:298:100:13:0,100:0,60:0,40:-115.7:PASS:370,301,0 chr2 10095185 . T C 563 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:194:57:16:30,27:13,5:17,22:-9.7:PASS:229,0,258 chr2 10101468 . A G 685 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:193:47:15:22,25:10,7:12,18:-17.1:PASS:236,0,191 chr2 10126330 . G A 2517 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:10:0,77:0,46:0,31:-92:PASS:370,232,0 chr2 10188649 . A T 2140 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:18:0,53:0,29:0,24:-74.3:PASS:370,159,0 chr2 10350599 . G C 494 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:46:9:24,22:7,10:17,12:-21.2:PASS:201,0,237 chr2 10894132 . G A 398 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:39:8:23,16:16,8:7,8:-14.7:PASS:162,0,234 chr2 10908893 . A G 565 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:155:42:8:23,19:11,12:12,7:-17:PASS:190,0,227 chr2 10912719 . G A 413 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:24:6:13,11:5,7:8,4:-12.4:PASS:143,0,171 chr2 10930903 . T C 876 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:137:43:5:25,18:9,7:16,11:-18.4:PASS:172,0,247 chr2 10933249 . C T 1452 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:182:86:5:53,33:30,24:23,9:-12.6:PASS:217,0,370 chr2 10942687 . C T 1622 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:283:250:73:10:38,35:20,15:18,20:-27.4:PASS:285,0,310 chr2 10960951 . G C 431 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:193:160:54:9:31,23:9,11:22,12:-18.8:PASS:195,0,287:. chr2 11053020 . A G 2258 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:12:0,51:0,28:0,23:-70.7:PASS:370,153,0 chr2 11053740 . C T 842 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:28:6:18,10:9,4:9,6:-12.8:PASS:124,0,199 chr2 11359120 . G T 663 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:161:44:3:17,27:10,14:7,13:-31.5:PASS:276,0,158 chr2 11738091 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:256:256:86:13:0,86:0,39:0,47:-112.1:PASS:370,259,0 chr2 11752635 . T C 1546 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:3:0,23:0,17:0,6:-27.4:PASS:350,69,0 chr2 11758429 . G A 573 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:185:58:11:24,34:18,23:6,11:-27.2:PASS:304,0,182 chr2 11817812 . G C 575 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:169:38:5:19,19:7,13:12,6:-14.8:PASS:204,0,180 chr2 11853913 . G A 397 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:129:30:3:12,18:6,11:6,7:-19.3:PASS:205,0,126 chr2 11911761 . C T 577 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:231:198:60:14:32,28:9,13:23,15:-23.5:PASS:233,0,272 chr2 15601441 . C T 1641 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:268:74:14:35,39:18,14:17,25:-24.8:PASS:311,0,266 chr2 15607842 . T C 1987 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:352:352:108:10:51,57:21,27:30,30:-47.1:PASS:370,0,349 chr2 15614404 . T C 1857 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:279:279:91:13:40,51:11,10:29,41:-22.3:PASS:370,0,276 chr2 15615910 . A G 1328 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:175:52:8:20,32:8,8:12,24:-21.1:PASS:298,0,172 chr2 15674686 . T C 744 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:231:211:53:5:26,27:15,16:11,11:-24.7:PASS:246,0,228 chr2 15747393 . C T 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:9:0,85:0,35:0,50:-101.9:PASS:370,256,0 chr2 17696573 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:316:316:106:19:0,106:0,61:0,45:-128.6:PASS:370,319,0 chr2 17698678 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:494:494:165:20:0,165:0,73:0,92:-203.4:PASS:370,370,0 chr2 17942775 . T A 2922 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:17:0,62:0,33:0,29:-87.2:PASS:370,187,0 chr2 17954027 . G A 2670 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:5:0,49:0,20:0,29:-64.7:PASS:370,147,0 chr2 17962450 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:409:409:137:9:0,137:0,77:0,60:-164.3:PASS:370,370,0 chr2 17962518 . C T 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:448:448:150:19:0,150:0,87:0,63:-174.7:PASS:370,370,0 chr2 18112301 . G A 313 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:30:7:17,13:14,10:3,3:-12.5:PASS:141,0,194 chr2 18112473 . G A 2551 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:54:7:0,54:0,26:0,28:-80.4:PASS:370,163,0 chr2 18113508 . G A 1646 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:318:290:84:16:42,42:16,21:26,21:-34.3:PASS:324,0,317 chr2 18113623 . A G 1618 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:73:11:38,35:13,18:25,17:-26.1:PASS:268,0,304 chr2 18757501 . G C 498 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:161:53:6:29,24:14,14:15,10:-18.2:PASS:195,0,269 chr2 18766123 . C T 287 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:18:9:11,7:7,3:4,4:-12.1:PASS:115,0,159 chr2 18768850 . A G 325 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:80:15:1:8,7:0,1:8,6:-8.7:PASS:115,0,88 chr2 20135283 . T C 1940 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:382:349:116:12:60,56:37,31:23,25:-44.2:PASS:370,0,370 chr2 20175312 . G A 1455 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:230:72:10:30,42:16,23:14,19:-37.4:PASS:356,0,227 chr2 20205680 . C T 673 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:46:14:28,18:16,8:12,10:-16.2:PASS:166,0,270 chr2 20205769 . C A 470 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:41:14:26,15:17,9:9,6:-16:PASS:139,0,261 chr2 20205848 . G A 1038 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:219:54:10:25,29:11,16:14,13:-26.1:PASS:262,0,216 chr2 20818764 . C T 276 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:18:7:10,8:7,7:3,1:-6.6:PASS:105,0,149 chr2 20818840 . C T 299 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:34:7:18,16:13,15:5,1:-5.2:PASS:159,0,201 chr2 20823724 . T C 1158 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:5:0,21:0,7:0,14:-28.2:PASS:332,63,0 chr2 20824498 . C T 428 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:32:9:19,13:14,11:5,2:-9:PASS:133,0,208 chr2 20824559 . C T 445 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:104:71:32:11:23,9:14,4:9,5:-9.2:PASS:106,0,250 chr2 20838222 . C T 646 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:150:34:11:16,18:11,13:5,5:-15:PASS:185,0,165 chr2 20838318 . G A 470 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:37:9:20,17:8,5:12,12:-16:PASS:184,0,203 chr2 21225281 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:357:357:154:19:64,90:32,44:32,46:-73.7:PASS:370,0,354 chr2 21225753 . C T 1008 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:318:285:123:18:71,52:30,24:41,28:-36.7:PASS:320,0,370 chr2 21231524 . G A 1214 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:440:407:162:27:89,73:37,41:52,32:-37.1:PASS:370,0,370 chr2 21232803 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:524:524:175:17:0,175:0,80:0,95:-219.1:PASS:370,370,0 chr2 21235475 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:10:0,80:0,25:0,55:-75.6:PASS:370,241,0 chr2 21245813 . G A 482 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:58:12:32,26:15,11:17,15:-20.9:PASS:212,0,283 chr2 21250914 . G A 2884 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:7:0,64:0,19:0,45:-61:PASS:370,193,0 chr2 21260121 . C T 433 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:154:33:11:16,17:6,5:10,12:-16:PASS:189,0,174 chr2 23865260 . T C 1275 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:6:0,17:0,9:0,8:-32.2:PASS:290,51,0 chr2 23919375 . C T 1029 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:174:49:11:26,23:9,6:17,17:-16.1:PASS:209,0,242 chr2 23926659 . T C 668 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:30:7:15,15:4,13:11,2:-5.3:PASS:166,0,176 chr2 24108652 . T C 1602 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:3:0,33:0,14:0,19:-47.5:PASS:370,99,0 chr2 24342505 . T C 452 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:34:4:18,16:6,9:12,7:-15.3:PASS:172,0,199 chr2 24342532 . G A 435 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:32:5:19,13:4,7:15,6:-13.1:PASS:155,0,217 chr2 24369674 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:6:0,80:0,47:0,33:-98.9:PASS:370,241,0 chr2 24384424 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:7:0,79:0,40:0,39:-114.4:PASS:370,238,0 chr2 24387178 . G GC 3070 PASS CIGAR=1M1I;RU=C;REFREP=1;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:121:121:50:1,47:0,17:1,30:PASS:999,124,0 chr2 24390517 . G A 874 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:2:0,12:0,5:0,7:-23.8:PASS:228,36,0 chr2 24905927 . G C 1912 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:10:0,52:0,26:0,26:-76.4:PASS:370,156,0 chr2 24974945 . T G 1516 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:6:0,33:0,11:0,22:-40.3:PASS:370,99,0 chr2 25046090 . T C 704 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:11:0,29:0,16:0,13:-45.8:PASS:370,87,0 chr2 25050977 . T C 728 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:4:0,17:0,4:0,13:-22.3:PASS:292,51,0 chr2 25377176 . T C 972 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:121:25:13:9,16:2,6:7,10:-20.4:PASS:195,0,118 chr2 25655772 . T C 323 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:32:2:19,13:12,8:7,5:-15.3:PASS:144,0,218 chr2 26177198 . A G 281 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:26:7:16,10:7,4:9,6:-12.8:PASS:125,0,194 chr2 26203678 . T C 2052 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:13:0,41:0,26:0,15:-51.8:PASS:370,123,0 chr2 26204640 . G A 946 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:11:0,18:0,4:0,14:-22:PASS:305,54,0 chr2 26399214 . G A 971 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:120:24:2:10,14:9,10:1,4:-17.1:PASS:174,0,117 chr2 26455127 . G A 586 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:181:42:5:21,21:5,9:16,12:-24.4:PASS:216,0,201 chr2 26477125 . G GACT 3070 PASS CIGAR=1M3I;RU=ACT;REFREP=1;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:317:317:114:0,108:0,78:0,30:PASS:999,320,0 chr2 26502875 . T C 527 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:169:36:6:16,20:14,13:2,7:-22:PASS:211,0,166 chr2 26534112 . G A 252 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:24:12:16,8:9,3:7,5:-10.1:PASS:111,0,196 chr2 26536299 . C G 1422 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:9:0,27:0,16:0,11:-40.6:PASS:370,81,0 chr2 26590084 . T G 1262 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:35:3:20,15:7,4:13,11:-14.7:PASS:159,0,223 chr2 26607992 . T C 2291 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:5:0,72:0,22:0,50:-68.8:PASS:370,217,0 chr2 26647277 . T G 2246 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:9:0,57:0,23:0,34:-71.2:PASS:370,172,0 chr2 26667130 . A G 420 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:39:4:24,15:11,10:13,5:-10.9:PASS:148,0,254 chr2 26667615 . T C 1588 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:12:0,40:0,25:0,15:-49.9:PASS:370,120,0 chr2 26676322 . A G 2107 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:18:0,45:0,21:0,24:-66.4:PASS:370,135,0 chr2 26699126 . C G 1986 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:205:64:17:27,37:17,22:10,15:-31.3:PASS:317,0,202 chr2 26699855 . G C 594 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:58:57:12:7:4,8:4,8:0,0:0:PASS:103,0,55 chr2 26700700 . G A 814 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:58:14:35,23:13,6:22,17:-12.8:PASS:178,0,309 chr2 26741961 . G A 753 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:5:0,23:0,12:0,11:-39.2:PASS:353,69,0 chr2 26798893 . A T 329 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:32:19:17,14:9,5:8,9:-15.1:PASS:165,0,199 chr2 26800422 . G A 276 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:61:61:15:5:3,12:2,7:1,5:-19.2:PASS:186,0,58 chr2 26804247 . T C 662 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:2:0,16:0,7:0,9:-29.7:PASS:279,48,0 chr2 27169842 . C A 572 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:8:0,13:0,4:0,9:-19.1:PASS:232,39,0 chr2 27246285 . C T 2850 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:5:0,51:0,28:0,23:-71.6:PASS:370,153,0 chr2 27324724 . G C 941 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:6:0,33:0,9:0,24:-31.9:PASS:370,99,0 chr2 27324751 . G T 830 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:5:0,28:0,6:0,22:-26.2:PASS:370,84,0 chr2 27351948 . T G 1465 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:2:0,33:0,11:0,22:-40.1:PASS:370,99,0 chr2 27424636 . G A 2491 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:24:0,56:0,28:0,28:-83.5:PASS:370,169,0 chr2 27428295 . A G 1885 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:7:0,33:0,16:0,17:-52.5:PASS:370,99,0 chr2 27435250 . A G 899 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:8:0,17:0,8:0,9:-32:PASS:285,51,0 chr2 27440785 . C T 1600 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:14:0,31:0,18:0,13:-45.5:PASS:370,93,0 chr2 27600664 . G A 652 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:255:68:17:33,35:13,9:20,26:-19.3:PASS:290,0,266 chr2 27672200 . C T 391 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:107:36:6:22,14:14,10:8,4:-12.4:PASS:142,0,234 chr2 27677498 . C A 567 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:198:47:4:22,25:5,6:17,19:-18.4:PASS:234,0,204 chr2 27801403 . C G 2646 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:388:388:130:26:0,130:0,58:0,72:-161.1:PASS:370,370,0 chr2 27801418 . C A 2549 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:391:391:131:23:0,131:0,60:0,71:-166.8:PASS:370,370,0 chr2 27801493 . T C 2531 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:373:373:125:18:0,125:0,65:0,60:-168:PASS:370,370,0 chr2 27801759 . A G 1950 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:259:259:87:14:0,87:0,31:0,56:-92.3:PASS:370,262,0 chr2 27838058 . C A 1185 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:4:0,45:0,21:0,24:-66:PASS:370,135,0 chr2 27851918 . G A 667 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:8:0,24:0,19:0,5:-23.1:PASS:362,72,0 chr2 28814033 . A G 534 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:4:0,11:0,5:0,6:-24.7:PASS:215,33,0 chr2 28824793 . C G 676 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:5:0,13:0,7:0,6:-27.7:PASS:248,39,0 chr2 28854958 . C T 179 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:47:23:8:18,5:9,2:9,3:-7.7:PASS:82,0,208 chr2 28855840 . C T 301 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:62:18:5:13,5:4,3:9,2:-7.7:PASS:97,0,188 chr2 28865760 . T C 505 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:110:26:4:12,14:12,10:0,4:-19.5:PASS:179,0,107 chr2 29001691 . A G 1643 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:222:189:81:9:48,33:28,25:20,8:-10.6:PASS:224,0,370 chr2 29092679 . T C 668 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:226:71:12:38,33:16,14:22,19:-27.9:PASS:260,0,309 chr2 29092850 . G T 335 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:34:10:19,15:6,6:13,9:-18.1:PASS:162,0,203 chr2 29135468 . C G 271 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:151:34:7:17,17:10,12:7,5:-14.7:PASS:186,0,173 chr2 29152456 . A G 1733 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:11:0,77:0,54:0,23:-70.1:PASS:370,232,0 chr2 29169612 . T C 508 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:233:76:6:32,44:11,14:21,30:-29.7:PASS:370,0,230 chr2 29222070 . G A 89 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:25:15:18,7:16,5:2,2:-7.9:PASS:86,0,214 chr2 29226498 . G A 404 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:9:0,19:0,4:0,15:-21.7:PASS:314,57,0 chr2 29226512 . A G 618 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:1:0,28:0,12:0,16:-42.4:PASS:370,84,0 chr2 29240060 . A G 301 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:43:43:19:6:4,15:4,11:0,4:-17.4:PASS:203,0,40 chr2 29240673 . G A 109 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:96:14:3:7,7:2,5:5,2:-10.5:PASS:131,0,120 chr2 29240686 . A C 181 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:90:15:2:5,10:1,7:4,3:-14.6:PASS:167,0,87 chr2 29240783 . A G 171 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:66:66:9:5:3,6:1,2:2,4:-11.8:PASS:123,0,63 chr2 29246044 . T C 207 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:103:15:9:7,8:5,5:2,3:-15.9:PASS:139,0,109 chr2 29274720 . A G 455 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:128:21:6:9,12:5,9:4,3:-14.2:PASS:168,0,127 chr2 29416366 . G C 1968 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:184:90:15:55,35:22,19:33,16:-18.2:PASS:219,0,370 chr2 29416572 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:13:0,65:0,37:0,28:-85.2:PASS:370,196,0 chr2 29416615 . G A 585 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:54:9:31,23:16,11:15,12:-21.5:PASS:194,0,279 chr2 29449819 . C T 426 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:111:22:11:7,15:4,4:3,11:-16.7:PASS:203,0,108 chr2 29455267 . A G 1193 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:6:0,27:0,11:0,16:-39.4:PASS:370,81,0 chr2 29543663 . T C 2624 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:12:0,47:0,23:0,24:-71.6:PASS:370,141,0 chr2 29940529 . A T 2602 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:11:0,61:0,32:0,29:-88.3:PASS:370,184,0 chr2 30143499 . G C 1919 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:7:0,45:0,15:0,30:-49.1:PASS:370,135,0 chr2 30381505 . T C 498 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:172:39:3:19,20:12,15:7,5:-14.8:PASS:207,0,198 chr2 30975961 . G T 318 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:164:50:6:28,22:14,16:14,6:-13.3:PASS:199,0,270 chr2 30980940 . C T 875 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:31:11:16,15:9,5:7,10:-13.6:PASS:170,0,185 chr2 31178818 . C T 545 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:21:0:13,8:4,1:9,7:-5.9:PASS:103,0,179 chr2 31399988 . C T 758 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:9:0,17:0,5:0,12:-22.6:PASS:287,51,0 chr2 31410653 . C T 856 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:3:0,19:0,9:0,10:-33.2:PASS:307,57,0 chr2 31411184 . C A 738 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:5:0,21:0,11:0,10:-35.9:PASS:330,63,0 chr2 31414807 . C G 756 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:6:0,19:0,15:0,4:-20.8:PASS:312,57,0 chr2 31420143 . C T 582 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:194:46:7:21,25:9,12:12,13:-26.7:PASS:240,0,191 chr2 31423443 . G A 929 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:110:36:5:11,25:3,6:8,19:-20.2:PASS:269,0,107 chr2 31571786 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:6:0,89:0,52:0,37:-107:PASS:370,268,0 chr2 31805706 . G C 1593 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:0:0,27:0,20:0,7:-29.3:PASS:370,81,0 chr2 31805880 . A AG 3070 PASS CIGAR=1M1I;RU=G;REFREP=2;IDREP=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:121:121:46:0,42:0,21:0,21:PASS:928,124,0 chr2 32475109 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:331:331:111:24:0,111:0,44:0,67:-125.1:PASS:370,334,0 chr2 32476390 . T G 3051 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:13:0,62:0,34:0,28:-83.5:PASS:370,187,0 chr2 32667182 . G C 2871 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:4:0,59:0,39:0,20:-63.5:PASS:370,178,0 chr2 32713706 . A T 2337 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:5:0,41:0,20:0,21:-64:PASS:370,123,0 chr2 32800422 . C G 545 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:260:75:9:35,40:16,13:19,27:-24.8:PASS:322,0,257 chr2 32822957 . G A 1959 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:227:64:6:33,31:10,9:23,22:-22.1:PASS:262,0,271 chr2 32855615 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:4:0,72:0,45:0,27:-80.9:PASS:370,217,0 chr2 32983480 . G A 338 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:43:14:23,20:15,12:8,8:-19.5:PASS:188,0,213 chr2 32983526 . C T 1757 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:48:14:27,21:11,5:16,16:-12.9:PASS:187,0,256 chr2 33335818 . C T 398 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:200:49:4:22,27:5,6:17,21:-18.8:PASS:260,0,197 chr2 33567971 . C T 357 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:112:28:8:9,19:2,9:7,10:-25.3:PASS:231,0,109 chr2 33585796 . T C 2266 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:10:0,53:0,32:0,21:-64.6:PASS:370,160,0 chr2 36704144 . C T 2551 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:7:0,56:0,32:0,24:-74.6:PASS:370,169,0 chr2 36810586 . T C 867 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:153:36:2:18,18:6,10:12,8:-18.5:PASS:188,0,181 chr2 37306343 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:7:0,69:0,43:0,26:-79.1:PASS:370,208,0 chr2 37438993 . G A 2665 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:252:219:68:11:36,32:30,25:6,7:-19.2:PASS:253,0,304 chr2 37456032 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:343:343:115:11:0,115:0,44:0,71:-125.7:PASS:370,346,0 chr2 37505108 . C T 543 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:260:72:5:35,37:13,12:22,25:-24.8:PASS:296,0,263 chr2 37518045 . G C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:7:0,63:0,26:0,37:-79.1:PASS:370,190,0 chr2 38178406 . A G 1498 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:218:63:4:27,36:21,29:6,7:-20.5:PASS:318,0,215 chr2 38179134 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:430:430:144:33:0,144:0,60:0,84:-166.3:PASS:370,370,0 chr2 38298150 . A G 1818 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:13:0,76:0,34:0,42:-99.5:PASS:370,229,0 chr2 38298203 . C G 1690 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:16:0,68:0,39:0,29:-87.5:PASS:370,205,0 chr2 38302177 . C A 173 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:23:13:12,11:4,7:8,4:-12:PASS:144,0,163 chr2 38302390 . G C 254 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:156:35:3:15,20:8,5:7,15:-13.1:PASS:213,0,153 chr2 38536626 . T G 551 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:175:52:4:21,31:7,15:14,16:-31.6:PASS:280,0,172 chr2 39025555 . G A 986 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:208:175:45:5:23,22:10,7:13,15:-17.5:PASS:210,0,225 chr2 39050141 . A C 809 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:228:62:13:31,31:27,27:4,4:-16.7:PASS:263,0,261 chr2 39082344 . T C 812 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:193:50:8:21,29:8,8:13,21:-20.4:PASS:271,0,190 chr2 39108693 . G A 487 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:231:62:5:31,31:9,10:22,21:-24.6:PASS:265,0,260 chr2 39187190 . T C 684 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:0:0,10:0,6:0,4:-22.3:PASS:213,30,0 chr2 39507417 . T A 2307 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:238:64:9:32,32:18,19:14,13:-26.7:PASS:272,0,265 chr2 39583446 . A G 2208 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:196:71:2:28,43:13,19:15,24:-38.4:PASS:367,0,193 chr2 39996957 . ATTC A 1610 PASS CIGAR=1M3D;RU=TTC;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:934:902:131:66,56:45,38:21,18:PASS:931,0,961 chr2 42510018 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:16:0,78:0,39:0,39:-111.8:PASS:370,235,0 chr2 42515388 . A G 1582 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:3:0,30:0,13:0,17:-45.4:PASS:370,90,0 chr2 42990101 . G C 581 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:115:21:5:9,12:7,8:2,4:-17.9:PASS:175,0,112 chr2 42990336 . T G 1304 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:8:0,24:0,9:0,15:-33.9:PASS:365,72,0 chr2 42990522 . C T 458 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:134:24:7:10,14:4,12:6,2:-9.8:PASS:177,0,131 chr2 43015719 . T C 1122 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:8:0,20:0,12:0,8:-30.1:PASS:309,60,0 chr2 43452183 . A G 619 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:51:51:17:7:5,12:5,8:0,4:-18.2:PASS:182,0,48 chr2 43452666 . C T 365 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:37:11:21,16:7,10:14,6:-12.8:PASS:160,0,216 chr2 43768450 . CTTT C 864 PASS CIGAR=1M3D;RU=T;REFREP=3;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:328:328:57:24,28:11,7:13,21:PASS:465,0,325 chr2 43797619 . C T 1440 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:64:9:38,26:23,15:15,11:-22.6:PASS:208,0,328 chr2 43801712 . A G 2681 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:394:361:123:13:64,59:36,31:28,28:-44.9:PASS:370,0,370 chr2 43804229 . T C 917 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:34:7:19,15:14,6:5,9:-13.3:PASS:164,0,201 chr2 43903066 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:432:399:146:22:77,69:44,40:33,29:-43.8:PASS:370,0,370 chr2 43903354 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:427:423:128:14:63,65:22,21:41,44:-37.1:PASS:370,0,370 chr2 43926943 . T A 1846 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:178:178:49:3:21,28:14,13:7,15:-26.8:PASS:268,0,175 chr2 43927459 . C G 1900 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:311:278:101:7:54,46:31,22:23,24:-31:PASS:313,0,370 chr2 43931176 . T C 914 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:36:17:21,15:10,7:11,8:-18.6:PASS:163,0,225 chr2 43968167 . G A 631 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:112:24:5:13,11:3,6:10,5:-12.5:PASS:146,0,163 chr2 44004010 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:217:217:73:9:0,73:0,28:0,45:-85:PASS:370,220,0 chr2 44021826 . T A 2964 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:10:0,85:0,23:0,62:-71.3:PASS:370,256,0 chr2 44028013 . A T 1694 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:152:152:65:6:1,64:1,36:0,28:-85.4:PASS:370,155,0 chr2 44065090 . G A 487 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:255:95:21:52,43:22,18:30,25:-29.2:PASS:289,0,370 chr2 44066247 . G C 534 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:247:247:79:16:33,46:9,9:24,37:-23:PASS:370,0,244 chr2 44078853 . G A 198 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:39:7:24,15:11,6:13,9:-15.2:PASS:148,0,237 chr2 44102491 . C T 639 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:28:28:24:11:1,23:0,14:1,9:-25.9:PASS:319,31,0 chr2 44104925 . T C 2100 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:11:0,37:0,17:0,20:-56.2:PASS:370,111,0 chr2 44209477 . C T 1263 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:6:0,28:0,17:0,11:-39.4:PASS:370,84,0 chr2 44502788 . A C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:454:425:137:32:69,68:35,30:34,38:-44.5:PASS:370,0,370 chr2 44547574 . G A 2853 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:325:292:93:11:48,45:25,22:23,23:-35.4:PASS:327,0,360 chr2 45640374 . C A 575 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:205:63:8:34,29:19,13:15,16:-24.1:PASS:240,0,285 chr2 45645512 . C T 600 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:207:53:6:26,27:24,21:2,6:-20.9:PASS:242,0,224 chr2 45807104 . T C 342 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:24:9:15,9:9,4:6,5:-11.5:PASS:123,0,200 chr2 46707808 . C CAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGGG 258 PASS CIGAR=1M39I;RU=.;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:100:57:32:9,6:3,2:6,4:PASS:97,0,130 chr2 46839477 . T C 637 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:108:21:6:8,13:2,8:6,5:-17.1:PASS:183,0,105 chr2 46987139 . G A 1758 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:268:268:90:11:0,90:0,50:0,40:-117.5:PASS:370,271,0 chr2 47220622 . G A 252 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:129:27:6:13,14:8,5:5,9:-14.3:PASS:164,0,165 chr2 47301029 . A G 480 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:6:0,15:0,2:0,13:-15.3:PASS:264,45,0 chr2 47601106 . T C 909 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:10:0,40:0,7:0,33:-29.4:PASS:370,120,0 chr2 48036361 . T C 385 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:222:64:5:32,32:18,21:14,11:-22.5:PASS:256,0,264 chr2 48807796 . A C 386 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:237:204:58:5:30,28:21,23:9,5:-13.8:PASS:239,0,269 chr2 48807976 . T C 525 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:226:67:15:34,33:13,15:21,18:-29.3:PASS:260,0,275 chr2 48808152 . G C 379 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:239:206:69:13:38,31:23,16:15,15:-26.5:PASS:241,0,324 chr2 48808594 . C T 1140 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:238:102:17:60,42:33,21:27,21:-29:PASS:272,0,370 chr2 48808882 . T A 914 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:398:398:146:23:65,81:35,50:30,31:-47.8:PASS:370,0,370 chr2 48808898 . C T 791 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:438:438:146:27:69,77:36,47:33,30:-41.8:PASS:370,0,370 chr2 48809593 . G T 989 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:89:11:56,33:29,12:27,21:-14.4:PASS:203,0,370 chr2 48822381 . G A 1566 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:9:0,31:0,18:0,13:-44.6:PASS:370,93,0 chr2 48873978 . A G 2412 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:224:74:13:40,34:23,16:17,18:-26.2:PASS:259,0,329 chr2 48898798 . T A 3014 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:4:0,67:0,34:0,33:-97.8:PASS:370,202,0 chr2 48915871 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:250:250:84:14:0,84:0,44:0,40:-114.5:PASS:370,253,0 chr2 48921375 . T C 2082 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:2:0,42:0,23:0,19:-61.5:PASS:370,126,0 chr2 49189921 . C T 801 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:49:13:26,23:18,13:8,10:-23.6:PASS:212,0,241 chr2 49191041 . C T 865 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:250:217:67:19:35,32:7,12:28,20:-28.2:PASS:251,0,288 chr2 51254901 . G A 245 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:62:68:15:50,18:20,8:30,10:-10.7:PASS:97,0,370 chr2 53992593 . A T 1313 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:185:67:10:38,29:19,14:19,15:-25.1:PASS:220,0,328 chr2 54115904 . A G 1082 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:178:145:48:2:28,20:11,9:17,11:-20.5:PASS:180,0,262 chr2 54120025 . A T 1285 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:275:242:68:5:34,34:23,19:11,15:-31.9:PASS:277,0,289 chr2 54120820 . G A 1324 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:195:54:4:28,26:12,12:16,14:-25.4:PASS:230,0,248 chr2 54127041 . C T 1893 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:221:53:9:25,28:14,19:11,9:-21.1:PASS:258,0,224 chr2 54482964 . C T 716 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:192:45:18:21,24:11,13:10,11:-25.3:PASS:234,0,190 chr2 54483272 . C A 182 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:85:52:33:11:24,9:8,2:16,7:-8.4:PASS:87,0,255 chr2 54562012 . C A 585 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:267:234:86:7:49,37:33,31:16,6:-12:PASS:268,0,370 chr2 54587596 . C T 263 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:40:10:21,19:7,9:14,10:-20.2:PASS:187,0,209 chr2 54858214 . A G 465 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:148:148:41:17:15,26:9,10:6,16:-24.8:PASS:268,0,145 chr2 54858664 . C T 767 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:193:46:7:22,24:6,12:16,12:-23.4:PASS:228,0,209 chr2 54895682 . C T 569 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:297:264:84:10:44,40:10,8:34,32:-18.5:PASS:298,0,351 chr2 55040426 . A G 2483 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:162:162:55:7:0,55:0,29:0,26:-80:PASS:370,166,0 chr2 55186394 . A C 275 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:148:147:28:2:12,16:3,2:9,14:-11.3:PASS:188,0,145 chr2 55189685 . C T 346 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:178:39:3:19,20:16,17:3,3:-15.2:PASS:213,0,193 chr2 55404794 . G A 649 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:327:322:92:8:44,47:27,33:17,14:-26.3:PASS:359,0,324 chr2 55407754 . C T 2642 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:4:0,42:0,17:0,25:-56:PASS:370,126,0 chr2 55436934 . G A 1072 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:203:52:4:26,26:8,7:18,19:-19.9:PASS:237,0,236 chr2 55470115 . C T 1539 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:274:274:82:7:37,45:24,29:13,16:-33.5:PASS:364,0,271 chr2 55490819 . G T 1126 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:196:50:17:25,25:16,21:9,4:-11.9:PASS:231,0,230 chr2 55771161 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:15:0,71:0,41:0,30:-89.5:PASS:370,214,0 chr2 55771169 . A T 1229 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:270:270:74:8:35,39:20,23:15,16:-31.9:PASS:313,0,267 chr2 55805440 . T C 2159 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:9:0,46:0,17:0,29:-54.6:PASS:370,138,0 chr2 55872538 . T C 748 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:221:59:3:30,29:17,8:13,21:-15.5:PASS:255,0,256 chr2 55883317 . G T 840 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:203:70:10:39,31:22,19:17,12:-22.9:PASS:238,0,328 chr2 55912120 . T C 536 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:142:38:4:21,17:14,9:7,8:-18.9:PASS:177,0,223 chr2 56420006 . A T 231 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:23:15:12,11:9,9:3,2:-9.7:PASS:143,0,152 chr2 56420296 . C T 295 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:142:31:17:15,16:9,5:6,11:-12.1:PASS:177,0,170 chr2 58316814 . A G 1902 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:3:0,66:0,34:0,32:-95.9:PASS:370,199,0 chr2 61175312 . T C 1403 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:3:0,21:0,7:0,14:-30.1:PASS:339,63,0 chr2 61304271 . A G 372 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:205:65:10:35,30:10,6:25,24:-16.4:PASS:240,0,302 chr2 61389737 . T G 455 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:186:68:8:39,29:19,11:20,18:-19.4:PASS:221,0,330 chr2 61413589 . TAAG T 680 PASS CIGAR=1M3D;RU=AAG;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:353:319:54:31,22:18,12:13,10:PASS:350,0,465 chr2 61415492 . A G 589 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:206:88:13:33,55:15,24:18,31:-47.4:PASS:370,0,203 chr2 61468761 . T C 486 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:217:56:7:25,31:19,12:6,19:-20.1:PASS:279,0,214 chr2 61522123 . T C 3035 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:9:0,64:0,42:0,22:-69.5:PASS:370,193,0 chr2 61566536 . T C 535 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:262:229:89:9:51,38:32,23:19,15:-27.1:PASS:264,0,370 chr2 61575308 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:10:0,88:0,58:0,30:-90.1:PASS:370,265,0 chr2 61647901 . A G 1690 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:206:51:5:25,26:13,10:12,16:-22:PASS:241,0,228 chr2 62065759 . C T 380 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:202:69:13:38,31:15,16:23,15:-24.6:PASS:236,0,321 chr2 62066927 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:324:324:111:23:0,110:0,59:0,51:-142.6:PASS:370,331,0 chr2 62081012 . A C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:340:340:114:58:0,114:0,41:0,73:-118.4:PASS:370,343,0 chr2 62729674 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:4:0,88:0,45:0,43:-124.4:PASS:370,265,0 chr2 62733189 . C T 118 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:49:49:7:0:2,5:0,3:2,2:-12.6:PASS:128,0,46 chr2 64124722 . C A 405 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:195:52:4:22,30:6,9:16,21:-24.9:PASS:288,0,192 chr2 65217089 . G C 292 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:46:8:2:3,5:2,5:1,0:0.7:PASS:81,0,77 chr2 65245365 . G A 365 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:50:6:27,23:5,7:22,16:-20.5:PASS:205,0,253 chr2 65298646 . GAAC G 935 PASS CIGAR=1M3D;RU=AAC;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:166:166:27:12,14:10,11:2,3:PASS:245,0,163 chr2 65298657 . A G 254 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:93:22:7:13,9:10,7:3,2:-11.9:PASS:127,0,151 chr2 65298806 . G A 186 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:29:7:17,12:11,9:6,3:-12.8:PASS:139,0,190 chr2 65299298 . C A 461 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:166:133:48:14:28,20:12,5:16,15:-11.1:PASS:167,0,268:65299298 chr2 65299300 . G C 780 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:212:212:56:9:25,31:9,12:16,19:-26.8:PASS:276,0,209:65299298 chr2 65299766 . T C 280 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:57:12:35,22:17,12:18,10:-15.6:PASS:167,0,318 chr2 67630980 . G A 2960 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:280:280:94:10:0,94:0,53:0,41:-119.4:PASS:370,283,0 chr2 67631831 . G A 3070 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:427:427:143:27:0,143:0,48:0,95:-137:PASS:370,370,0 chr2 67632125 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:418:418:140:13:0,140:0,68:0,72:-191.5:PASS:370,370,0 chr2 68364478 . T C 1206 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:186:49:3:25,24:14,14:11,10:-22.8:PASS:220,0,233 chr2 68385097 . A G 754 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:5:0,22:0,8:0,14:-31.1:PASS:345,66,0 chr2 68388823 . A G 341 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:178:145:33:4:17,16:11,6:6,10:-15.2:PASS:180,0,195 chr2 68415767 . G A 703 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:266:91:10:39,52:21,25:18,27:-45.1:PASS:370,0,263 chr2 68511584 . A G 162 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:16:4:10,6:3,4:7,2:-6.9:PASS:105,0,164 chr2 68607947 . G T 1002 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:207:90:17:53,37:27,20:26,17:-24.2:PASS:241,0,370 chr2 68613710 . G A 750 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:70:14:36,34:21,23:15,11:-22:PASS:268,0,296 chr2 68622914 . G A,C 771 PASS SNVHPOL=3;MQ=60;AC=2,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:6:0,14,0:0,2,0:0,12,0:-14.3:PASS:239,42,0,239,42,239 chr2 68753240 . T A 397 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:235:83:6:46,37:33,28:13,9:-19.8:PASS:270,0,370 chr2 68765205 . C T 559 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:236:88:10:50,38:27,19:23,19:-29.5:PASS:271,0,370 chr2 69173570 . C T 850 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:211:55:7:25,30:5,13:20,17:-30.7:PASS:275,0,208 chr2 69659126 . A T 1240 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:61:2:33,28:9,7:24,21:-18.1:PASS:225,0,297 chr2 69741609 . C T 78 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:54:7:1:3,4:3,3:0,1:-8.7:PASS:104,0,51 chr2 69741753 . CTGT C 672 PASS CIGAR=1M3D;RU=TGT;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:177:177:37:14,22:7,16:7,6:PASS:395,0,174 chr2 69741854 . T G 1793 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:2:0,32:0,13:0,19:-44.9:PASS:370,96,0 chr2 70488470 . C T 410 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:246:213:74:6:41,33:21,13:20,20:-21.1:PASS:248,0,339 chr2 70504470 . C T 341 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:172:56:6:32,24:15,9:17,15:-18.9:PASS:207,0,287 chr2 70524577 . G A 289 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:13:0:7,6:4,0:3,6:2.8:PASS:80,0,116 chr2 71012604 . G A 1560 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:55:7:2,53:0,33:2,20:-48.7:PASS:370,99,0 chr2 71012734 . C G 1814 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:5:0,56:0,23:0,33:-72:PASS:370,169,0 chr2 71043461 . C T 1575 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:287:287:100:10:44,56:25,30:19,26:-48.9:PASS:370,0,284 chr2 71058184 . C T 252 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:44:13:27,17:20,15:7,2:-7.6:PASS:142,0,274 chr2 71060037 . A G 255 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:168:36:17:16,19:8,12:8,7:-18.2:PASS:206,0,167 chr2 71060936 . G C 525 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:279:76:7:37,39:22,21:15,18:-35.8:PASS:314,0,285 chr2 71062648 . G A 216 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:30:8:18,12:9,5:9,7:-13.2:PASS:136,0,208 chr2 71163173 . C T 652 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:404:371:154:59:86,68:41,40:45,28:-33.3:PASS:370,0,370 chr2 71211989 . A G 638 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:39:8:20,19:13,10:7,9:-19.9:PASS:187,0,198 chr2 71305456 . C T 990 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:5:0,11:0,10:0,1:-7.3:PASS:194,33,0 chr2 71351487 . G A 722 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:57:13:35,22:19,12:16,10:-18.1:PASS:165,0,320 chr2 71366957 . C A 107 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:60:10:1:6,4:5,1:1,3:-5.2:PASS:95,0,117 chr2 71417065 . G T 1280 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:8:0,37:0,27:0,10:-36.1:PASS:370,111,0 chr2 71633275 . T C 972 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:233:69:1:30,39:20,24:10,15:-32.7:PASS:333,0,230 chr2 71633389 . C T 930 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:215:66:4:35,31:10,11:25,20:-24:PASS:250,0,291 chr2 71654175 . G A 1286 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:216:129:32:81,48:43,22:38,26:-22.9:PASS:251,0,370 chr2 71747923 . C T 175 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:107:28:5:17,11:10,8:7,3:-12.5:PASS:142,0,203 chr2 71780215 . T C 515 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:81:20:2:11,9:8,8:3,1:-6.6:PASS:115,0,158 chr2 71795152 . A T 1167 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:14:0,37:0,22:0,15:-49.5:PASS:370,111,0 chr2 71838597 . C A 2292 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:165:165:56:30:0,56:0,8:0,48:-31.8:PASS:370,169,0 chr2 72361960 . A G 793 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:249:75:11:33,42:18,21:15,21:-38.9:PASS:348,0,246 chr2 72362291 . G A 246 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:185:50:12:26,24:11,11:15,13:-24.9:PASS:220,0,236 chr2 72707874 . A G 1353 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:142:58:7:36,22:7,5:29,17:-16.6:PASS:177,0,339 chr2 73226093 . G A 215 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:51:51:8:5:2,6:1,5:1,1:-8:PASS:120,0,48 chr2 73339708 . G A 398 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:88:55:12:3:5,7:3,0:2,7:2.1:PASS:90,0,115 chr2 73478461 . A T 718 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:7:0,23:0,12:0,11:-40.5:PASS:359,69,0 chr2 73490412 . A G 222 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:21:21:8:5:0,8:0,1:0,7:-9.4:PASS:170,24,0 chr2 73613031 . TGGAGGA T,TGGAGGAGGA 1600 PASS CIGAR=1M6D,1M3I6M;RU=GGA,GGA;REFREP=13,13;IDREP=11,14;MQ=60;AC=1,0;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:105:105:80:18,25,12:15,22,11:3,3,1:PASS:465,0,260,238,84,461 chr2 73651967 . C T 623 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:320:303:87:13:43,44:15,12:28,32:-23.7:PASS:338,0,317 chr2 73675227 . T TCTC 3070 PASS CIGAR=1M3I;RU=CTC;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:704:704:108:50,51:35,28:15,23:PASS:879,0,701 chr2 73675669 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:28:0,53:0,31:0,22:-67.7:PASS:370,160,0 chr2 73677833 . A G 442 PASS SNVHPOL=2;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:221:87:56:50,37:22,26:28,11:-12.4:PASS:256,0,370 chr2 73679866 . T C 728 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:385:352:124:7:66,58:27,17:39,41:-25.4:PASS:370,0,370 chr2 73679990 . T A 444 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:79:16:46,33:21,11:25,22:-15.6:PASS:225,0,370 chr2 73680508 . G C 677 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:306:273:110:19:62,48:34,23:28,25:-31.3:PASS:308,0,370 chr2 73717567 . G T 583 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:326:293:128:13:74,54:44,34:30,20:-28.5:PASS:328,0,370 chr2 73717656 . A G 671 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:345:312:142:11:82,60:42,38:40,22:-25.2:PASS:347,0,370 chr2 73746923 . C T 352 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:170:42:2:18,24:15,18:3,6:-20.3:PASS:235,0,167 chr2 73828538 . G A 836 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:58:35:5:22,13:3,0:19,13:2.1:PASS:93,0,246 chr2 73829372 . C T 1021 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:506:473:178:34:94,84:47,43:47,41:-56.6:PASS:370,0,370 chr2 73868328 . A G 557 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:291:258:78:24:40,38:19,20:21,18:-31:PASS:293,0,313 chr2 73927931 . A G 1806 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:197:56:15:29,27:16,10:13,17:-19.2:PASS:232,0,247 chr2 73928098 . C G 2237 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:215:72:19:39,33:20,16:19,17:-27.4:PASS:250,0,314 chr2 73928240 . C T 580 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:271:88:23:39,49:27,30:12,19:-39.9:PASS:370,0,268 chr2 73928366 . G C 1673 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:171:59:9:32,27:3,5:29,22:-16.2:PASS:205,0,271 chr2 73957124 . A G 1999 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:8:0,42:0,22:0,20:-62.1:PASS:370,126,0 chr2 74007136 . T C 995 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:3:0,13:0,3:0,10:-17.9:PASS:243,39,0 chr2 74135898 . A G 1439 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:47:11:24,23:12,11:12,12:-23.8:PASS:212,0,221 chr2 74466594 . G A 537 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:17:8:13,4:6,3:7,1:-2.9:PASS:70,0,181 chr2 74690039 . G A 304 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:146:35:12:14,21:5,8:9,13:-22.7:PASS:221,0,143 chr2 74690378 . C T 341 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:164:56:10:32,24:12,7:20,17:-16.5:PASS:199,0,294 chr2 74699778 . C A 205 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:33:9:22,11:13,4:9,7:-9:PASS:115,0,239 chr2 74710491 . C T 234 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:23:11:15,8:7,3:8,5:-12.5:PASS:122,0,187 chr2 74725144 . T C 639 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:58:15:9:9,6:2,1:7,5:-7.3:PASS:93,0,141 chr2 74746322 . A T 296 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:53:8:29,24:9,6:20,18:-13.8:PASS:201,0,267 chr2 75113657 . C T 574 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:284:251:107:38:62,45:44,33:18,12:-22.2:PASS:286,0,370 chr2 75113789 . C G 2855 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:490:457:163:45:85,78:43,37:42,41:-51.7:PASS:370,0,370 chr2 75115108 . A G 960 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:140:51:4:31,20:18,14:13,6:-13.8:PASS:175,0,296 chr2 75425728 . A G 1962 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:6:0,56:0,33:0,23:-71.1:PASS:370,169,0 chr2 75720372 . C T 131 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:19:3:12,7:9,5:3,2:-11.3:PASS:103,0,166 chr2 75720568 . CGCTGTCGCT C 337 PASS CIGAR=1M9D;RU=GCTGTCGCT;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:128:94:21:12,8:5,4:7,4:PASS:125,0,182 chr2 75720664 . G A 199 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:19:6:11,8:1,2:10,6:-12.2:PASS:121,0,135 chr2 79254261 . T C 1922 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:9:0,42:0,14:0,28:-47:PASS:370,126,0 chr2 80101321 . T G 841 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:27:5:14,13:7,4:7,9:-13.2:PASS:152,0,169 chr2 80620370 . T C 383 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:46:1:25,21:13,16:12,5:-13.2:PASS:201,0,240 chr2 84756049 . G A 2515 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:20:0,50:0,32:0,18:-57.7:PASS:370,150,0 chr2 84771480 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:268:268:90:5:0,90:0,46:0,44:-126.2:PASS:370,271,0 chr2 84771567 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:4:0,83:0,23:0,60:-70.2:PASS:370,250,0 chr2 84780063 . CAAG C 888 PASS CIGAR=1M3D;RU=AAG;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:392:360:75:45,26:22,13:23,13:PASS:389,0,693 chr2 84800605 . C A 3048 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:9:0,62:0,41:0,21:-67:PASS:370,187,0 chr2 84880445 . G C 536 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:239:66:5:33,33:27,28:6,5:-16.1:PASS:273,0,274 chr2 84897517 . A G 1997 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:3:0,44:0,14:0,30:-47.6:PASS:370,132,0 chr2 84921433 . A G 393 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:60:6:33,27:19,18:14,9:-17.7:PASS:218,0,299 chr2 84924823 . T C 732 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:364:364:115:19:54,61:27,27:27,34:-44.5:PASS:370,0,361 chr2 84945469 . G A 419 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:248:64:5:30,33:13,15:17,18:-31.8:PASS:287,0,248 chr2 85549868 . A G 998 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:232:199:77:20:42,35:25,14:17,21:-17.8:PASS:234,0,340 chr2 85549874 . A G 415 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:203:80:20:44,36:22,16:22,20:-23.7:PASS:238,0,350 chr2 85553784 . C T 760 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:179:51:6:27,24:16,17:11,7:-16.7:PASS:214,0,250 chr2 85554080 . G A 1462 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:373:340:118:13:63,55:41,46:22,9:-13.8:PASS:370,0,370 chr2 85576627 . G A 316 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:170:38:2:18,20:12,9:6,11:-19.1:PASS:205,0,186 chr2 85622059 . T C 565 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:78:45:13:2:9,4:5,3:4,1:-5.9:PASS:79,0,149 chr2 85769711 . C G 2333 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:274:241:67:8:34,33:21,24:13,9:-19.8:PASS:276,0,281 chr2 85780131 . G A 1420 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:96:63:57:14:41,16:26,10:15,6:-11:PASS:97,0,370 chr2 85780536 . C T 3070 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:435:402:155:38:84,71:43,39:41,32:-44.2:PASS:370,0,370 chr2 85781318 . T G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:10:0,63:0,47:0,16:-53.4:PASS:370,190,0 chr2 85806266 . C T 921 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:112:20:4:7,13:3,5:4,8:-17.3:PASS:175,0,109 chr2 85808737 . A G 1066 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:163:37:2:18,19:12,10:6,9:-22.3:PASS:198,0,183 chr2 85818886 . C T 211 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:82:16:7:10,6:4,3:6,3:-12.3:PASS:117,0,157 chr2 85824039 . G A 370 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:209:50:11:23,27:11,20:12,7:-16.5:PASS:254,0,206 chr2 85826721 . G A 216 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:17:2:10,7:5,3:5,4:-13:PASS:120,0,156 chr2 85893741 . G A 1647 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:164:54:25:30,24:17,13:13,11:-22.9:PASS:199,0,273 chr2 86259443 . C T 950 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:75:25:5:16,9:3,4:13,5:-9.2:PASS:110,0,207 chr2 86260785 . C T 203 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:44:28:7:18,10:7,0:11,10:4.8:PASS:79,0,206 chr2 86302253 . C T 316 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:154:33:6:14,19:7,12:7,7:-19.8:PASS:206,0,151 chr2 86315741 . C T 532 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:132:20:7:8,12:5,6:3,6:-18.2:PASS:170,0,132 chr2 86317037 . G C 1337 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:3:0,47:0,15:0,32:-50.1:PASS:370,141,0 chr2 86344237 . A G 350 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:176:39:1:19,20:7,10:12,10:-22.5:PASS:211,0,196 chr2 86371883 . T C 1481 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:275:274:74:8:35,39:11,19:24,20:-33.3:PASS:316,0,272 chr2 86433240 . C T 648 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:23:6:13,10:9,6:4,4:-15.8:PASS:143,0,176 chr2 86979093 . G A 315 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:107:86:10:2:5,5:4,2:1,3:-11.2:PASS:121,0,105 chr2 88387403 . C A 526 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:3:0,29:0,26:0,3:-17.5:PASS:370,87,0 chr2 88472791 . G A 956 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:7:0,17:0,8:0,9:-32.6:PASS:288,51,0 chr2 88874891 . C A 1053 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:295:280:78:11:38,40:13,9:25,31:-18.4:PASS:315,0,292 chr2 88895123 . T C 1131 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:238:67:9:30,37:20,25:10,12:-27.8:PASS:315,0,235 chr2 88913273 . G C 912 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:55:3:31,24:14,6:17,18:-12.8:PASS:205,0,287 chr2 95847040 . TGCG T 3070 PASS CIGAR=1M3D;RU=GCG;REFREP=3;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:209:209:75:0,70:0,47:0,23:PASS:999,212,0 chr2 95847673 . A T 346 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:185:53:30:28,25:14,12:14,13:-24.6:PASS:220,0,244 chr2 95947085 . A G 482 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:2:0,9:0,1:0,8:-8.5:PASS:173,27,0 chr2 96265165 . C T 280 PASS SNVHPOL=3;MQ=20;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:89:89:29:6:11,18:11,18:0,0:0:PASS:162,0,86 chr2 96780716 . T G 2711 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:15:0,89:0,47:0,42:-121.1:PASS:370,268,0 chr2 96780986 . C CTCCTCCTCT 3070 PASS CIGAR=1M9I;RU=TCCTCCTCT;REFREP=1;IDREP=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:439:439:190:6,181:4,130:2,51:PASS:999,442,0 chr2 96789973 . C T 152 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:16:6:10,6:4,5:6,1:-4.5:PASS:100,0,157 chr2 97351840 . A G 203 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:92:60:8:4:4,4:1,3:3,1:-6.6:PASS:94,0,97 chr2 97359422 . T G 161 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:25:1:17,8:6,4:11,4:-10.5:PASS:102,0,207 chr2 97493877 . T C 142 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:82:49:16:5:11,5:8,3:3,2:-8.8:PASS:84,0,171 chr2 97613616 . T C 829 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:7:0,18:0,11:0,7:-29.7:PASS:299,54,0 chr2 97637905 . T C 739 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:7:0,19:0,8:0,11:-30.8:PASS:303,57,0 chr2 97638038 . A G 658 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:3:0,10:0,2:0,8:-13.9:PASS:199,30,0 chr2 97808394 . C G 2099 PASS SNVHPOL=3;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:429:396:226:27:135,91:72,38:63,53:-30.1:PASS:370,0,370 chr2 97827839 . G A 811 PASS SNVHPOL=3;MQ=39;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:144:33:15:16,17:9,14:7,3:-10.9:PASS:179,0,167 chr2 97833342 . G A 305 PASS SNVHPOL=2;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:56:8:34,22:22,16:12,6:-12.2:PASS:155,0,301 chr2 97833466 . C T 455 PASS SNVHPOL=2;MQ=38;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:155:64:1:38,26:19,22:19,4:-3.7:PASS:190,0,327 chr2 97849219 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:394:394:132:20:0,132:0,46:0,86:-129:PASS:370,370,0 chr2 97851069 . A G 3070 PASS SNVHPOL=3;MQ=45;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:11:0,65:0,21:0,44:-66.8:PASS:370,196,0 chr2 97860487 . T C 2775 PASS SNVHPOL=2;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:71:71:129:10:31,98:26,59:5,39:-82.9:PASS:370,0,68 chr2 97864333 . C A 3070 PASS SNVHPOL=2;MQ=47;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:319:319:107:6:0,107:0,15:0,92:-50.1:PASS:370,322,0 chr2 97864334 . C T 3070 PASS SNVHPOL=2;MQ=47;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:313:313:105:8:0,105:0,16:0,89:-52.1:PASS:370,316,0 chr2 97864374 . G T 3070 PASS SNVHPOL=2;MQ=46;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:274:274:92:8:0,92:0,7:0,85:-29.9:PASS:370,277,0 chr2 97877292 . C A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:430:430:144:11:0,144:0,79:0,65:-182.7:PASS:370,370,0 chr2 97877440 . T C 1505 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:140:9:96,44:42,18:54,26:-15.9:PASS:170,0,370 chr2 97877478 . G A 1395 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:112:9:75,37:31,18:44,19:-17.4:PASS:183,0,370 chr2 97879162 . G C 1457 PASS SNVHPOL=4;MQ=20;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:4:0,24:0,13:0,11:-39.3:PASS:363,72,0 chr2 97881251 . C T 122 PASS SNVHPOL=4;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:125:12:88,37:34,12:54,25:-10.5:PASS:139,0,370 chr2 98129682 . T C 182 PASS SNVHPOL=2;MQ=33;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:61:7:41,20:24,19:17,1:3.5:PASS:121,0,367 chr2 98129683 . G A 189 PASS SNVHPOL=2;MQ=33;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:63:5:42,21:24,20:18,1:4.9:PASS:123,0,370 chr2 98129690 . T C 280 PASS SNVHPOL=3;MQ=34;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:131:98:67:8:44,23:21,21:23,2:5.3:PASS:132,0,370:98129690 chr2 98129691 . G A 361 PASS SNVHPOL=4;MQ=34;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:161:128:69:6:44,25:23,23:21,2:2.4:PASS:162,0,370:98129690 chr2 98129707 . G T 446 PASS SNVHPOL=3;MQ=34;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:168:74:8:45,29:23,24:22,5:-4.4:PASS:202,0,370 chr2 98129716 . A G 377 PASS SNVHPOL=3;MQ=34;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:195:162:81:4:50,31:25,25:25,6:-3.1:PASS:196,0,370:98129716 chr2 98129717 . C T 429 PASS SNVHPOL=3;MQ=34;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:196:163:83:3:52,31:26,25:26,6:-3.6:PASS:198,0,370:98129716 chr2 98129731 . C T 425 PASS SNVHPOL=2;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:185:152:84:3:53,31:24,24:29,7:-3.1:PASS:187,0,370:98129731 chr2 98129733 . A C 429 PASS SNVHPOL=3;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:205:172:85:2:52,33:22,25:30,8:-4.8:PASS:207,0,370:98129731 chr2 98129734 . T C 413 PASS SNVHPOL=3;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:187:154:80:7:50,30:23,24:27,6:-4:PASS:189,0,370:98129731 chr2 98129744 . C T 477 PASS SNVHPOL=4;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:242:209:87:4:51,36:20,26:31,10:-8.8:PASS:244,0,370 chr2 98129817 . T C 229 PASS SNVHPOL=2;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:80:1:50,30:16,13:34,17:-18.6:PASS:186,0,370 chr2 98164020 . C T 2568 PASS SNVHPOL=9;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:251:218:97:16:56,41:31,17:25,24:-21.5:PASS:253,0,370:98164020 chr2 98164021 . T C 2579 PASS SNVHPOL=7;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:247:214:98:15:58,40:32,15:26,25:-18.6:PASS:249,0,370:98164020 chr2 98164184 . C G 2630 PASS SNVHPOL=2;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:357:324:101:13:52,49:22,31:30,18:-26:PASS:359,0,370 chr2 98165911 . T C 3070 PASS SNVHPOL=7;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:400:400:366:27:52,314:30,200:22,114:-242.2:PASS:370,370,0 chr2 98274527 . G C 1000 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:2:0,15:0,8:0,7:-29.3:PASS:262,45,0 chr2 98354511 . G A 331 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:97:33:60,37:47,29:13,8:-16.8:PASS:208,0,370 chr2 98409046 . G A 535 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:153:30:6:13,17:8,11:5,6:-17.6:PASS:195,0,151 chr2 98709684 . T C 472 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:197:55:9:23,32:9,19:14,13:-26.1:PASS:287,0,194 chr2 98779418 . G A 166 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:67:14:2:8,6:2,1:6,5:-7.3:PASS:102,0,128 chr2 98844674 . C G 439 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:2:0,15:0,9:0,6:-26.3:PASS:267,45,0 chr2 98853173 . G A 820 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:5:0,39:0,6:0,33:-25.9:PASS:370,117,0 chr2 98928494 . G A 1833 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:12:0,34:0,15:0,19:-50.4:PASS:370,102,0 chr2 99149946 . G A 66 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:53:20:16:7:13,3:8,1:5,2:-3.2:PASS:55,0,190 chr2 99172244 . A G 258 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:115:22:9:10,12:2,1:8,11:-7.3:PASS:149,0,136 chr2 99193496 . C T 162 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:83:82:9:4:3,6:1,4:2,2:-11.5:PASS:121,0,80 chr2 99778985 . T C 1906 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:232:119:9:73,46:41,28:32,18:-24.3:PASS:267,0,370 chr2 99779131 . T C 2025 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:293:260:105:9:60,45:24,30:36,15:-16.1:PASS:295,0,370 chr2 99804642 . T C 1347 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:168:34:8:15,19:11,10:4,9:-22.4:PASS:212,0,165 chr2 99812070 . G A 586 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:119:21:2:7,14:4,7:3,7:-21.1:PASS:186,0,116 chr2 99992822 . A C 1612 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:185:43:1:21,22:16,18:5,4:-15.8:PASS:220,0,209 chr2 99995804 . T C 1878 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:224:68:5:35,33:22,21:13,12:-24.2:PASS:259,0,294 chr2 100019496 . A G 1960 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:203:62:9:33,29:8,6:25,23:-16.8:PASS:238,0,278 chr2 100055158 . T C 364 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:52:3:32,20:25,18:7,2:-9.1:PASS:161,0,308 chr2 100055506 . A G 2243 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:203:66:6:36,30:21,19:15,11:-22.2:PASS:237,0,297 chr2 100218080 . G A 540 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:64:25:7:18,7:5,2:13,5:-10.5:PASS:99,0,213 chr2 100343557 . C T 1595 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:1:0,31:0,14:0,17:-48.2:PASS:370,93,0 chr2 100623130 . G A 231 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:31:9:17,14:13,9:4,5:-17.4:PASS:155,0,190 chr2 100915772 . A G 1006 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:24:4:14,10:4,5:10,5:-14.6:PASS:138,0,185 chr2 100916306 . A G 1526 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:117:49:8:31,17:11,6:20,11:-15.5:PASS:152,0,301 chr2 101010082 . G C 1120 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:97:20:56,41:36,19:20,22:-22.3:PASS:268,0,370 chr2 101096960 . C T 464 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:15:2:11,4:7,2:4,2:-9.1:PASS:86,0,173 chr2 101580575 . G A 237 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:43:8:25,18:8,4:17,14:-14:PASS:176,0,250 chr2 101591304 . A G 2964 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:13:0,47:0,30:0,17:-54.3:PASS:370,141,0 chr2 101594191 . C T 604 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:339:306:114:26:62,52:37,32:25,20:-31.2:PASS:341,0,370 chr2 101624471 . T C 1223 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:217:64:13:28,36:20,20:8,16:-33.3:PASS:302,0,214 chr2 101638888 . A G 618 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:123:24:6:12,12:7,6:5,6:-17.5:PASS:158,0,152 chr2 101646144 . G A 193 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:24:5:16,8:10,2:6,6:-6:PASS:103,0,198 chr2 101656726 . T C 572 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:120:21:7:8,13:6,12:2,1:-6.4:PASS:156,0,123 chr2 101869588 . G T 40 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:35:23:3:2:1,2:1,2:0,0:0:PASS:58,0,32 chr2 101898412 . G C 1712 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:4:0,28:0,13:0,15:-44.5:PASS:370,84,0 chr2 102018908 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:740:740:247:55:0,247:0,160:0,87:-237.2:PASS:370,370,0 chr2 102038849 . T A 2909 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:162:162:55:7:0,55:0,36:0,19:-60:PASS:370,166,0 chr2 102955468 . C A 1883 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:218:70:7:38,32:14,8:24,24:-17.3:PASS:253,0,319 chr2 102968007 . G A 298 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:43:5:22,21:18,16:4,5:-16.7:PASS:202,0,210 chr2 102968075 . T C 320 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:44:10:23,21:15,19:8,2:-8.4:PASS:200,0,228 chr2 102968211 . C A 474 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:231:198:55:4:28,27:15,11:13,16:-21.7:PASS:233,0,246:102968211 chr2 102968212 . A G 456 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:216:183:57:4:31,26:15,10:16,16:-20.2:PASS:218,0,276:102968211 chr2 102968285 . T C 498 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:209:56:13:25,31:11,11:14,20:-24.7:PASS:284,0,206 chr2 102968356 . C T 400 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:203:51:7:23,28:4,9:19,19:-25:PASS:253,0,200 chr2 102968362 . T C 432 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:194:50:5:22,28:4,10:18,18:-27.8:PASS:256,0,191 chr2 103095531 . T C 244 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:132:26:9:12,14:6,7:6,7:-18.7:PASS:167,0,158 chr2 103149100 . G A 2220 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:76:7:43,33:10,9:33,24:-20.2:PASS:235,0,362 chr2 103334969 . G A 226 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:34:5:22,12:15,9:7,3:-10.2:PASS:121,0,237 chr2 103431404 . T C 2570 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:7:0,53:0,22:0,31:-68.5:PASS:370,159,0 chr2 105709023 . T C 1828 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:4:0,32:0,10:0,22:-36.9:PASS:370,96,0 chr2 105859249 . C T 564 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:44:7:29,15:12,8:17,7:-12.5:PASS:134,0,287 chr2 105885961 . T C 481 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:4:0,10:0,2:0,8:-15.3:PASS:210,30,0 chr2 105889349 . G A 207 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:131:21:8:9,12:5,10:4,2:-10.6:PASS:167,0,136 chr2 105924510 . A G 609 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:130:21:6:9,12:2,4:7,8:-18.1:PASS:166,0,131 chr2 105977776 . G A 590 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:117:32:5:18,14:11,8:7,6:-17:PASS:152,0,203 chr2 107032417 . A G 927 PASS SNVHPOL=4;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:55:6:29,26:8,13:21,13:-18.4:PASS:208,0,260 chr2 107040572 . T C 612 PASS SNVHPOL=4;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:241:28:176,65:101,31:75,34:3.8:PASS:65,0,370 chr2 107040985 . T C 714 PASS SNVHPOL=3;MQ=48;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:224:191:180:16:119,61:60,37:59,24:-13.1:PASS:226,0,370 chr2 107073469 . T A 1041 PASS SNVHPOL=2;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:172:121:14:79,41:46,22:33,19:-22.5:PASS:207,0,370 chr2 107073501 . C T 1068 PASS SNVHPOL=2;MQ=47;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:131:14:88,43:44,21:44,22:-21.4:PASS:186,0,370 chr2 107423188 . G A 2292 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:298:298:100:23:0,100:0,47:0,53:-134.3:PASS:370,301,0 chr2 107423395 . T G 1641 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:11:0,44:0,3:0,41:-16.9:PASS:370,132,0 chr2 108455303 . G T 1166 PASS SNVHPOL=2;MQ=29;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:5:0,31:0,14:0,17:-43.5:PASS:370,93,0 chr2 108475958 . A G 1800 PASS SNVHPOL=3;MQ=43;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:284:163:20:100,63:41,27:59,36:-35.9:PASS:319,0,370 chr2 108479432 . G A 1255 PASS SNVHPOL=3;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:86:8:58,28:15,10:43,18:-16.3:PASS:155,0,370 chr2 108479487 . A T 895 PASS SNVHPOL=3;MQ=33;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:61:4:40,21:6,7:34,14:-13.6:PASS:144,0,355 chr2 108487330 . A G 3070 PASS SNVHPOL=2;MQ=39;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:466:433:243:21:145,98:71,49:74,49:-53.1:PASS:370,0,370 chr2 108487826 . C T 1200 PASS SNVHPOL=4;MQ=40;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:75:141:15:101,40:24,15:77,25:-3.8:PASS:110,0,370 chr2 108487829 . G C 1842 PASS SNVHPOL=3;MQ=40;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:235:136:11:83,53:25,12:58,41:-15.7:PASS:269,0,370 chr2 108487877 . T C 794 PASS SNVHPOL=3;MQ=36;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:156:72:13:25,47:10,16:15,31:-32.8:PASS:370,0,153 chr2 108487901 . A G 877 PASS SNVHPOL=3;MQ=30;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:7:0,30:0,14:0,16:-46.4:PASS:370,90,0 chr2 108487966 . A G 660 PASS SNVHPOL=2;MQ=26;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:7:0,19:0,16:0,3:-15.8:PASS:300,57,0 chr2 108488475 . G T 3070 PASS SNVHPOL=5;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:981:954:329:29:164,165:75,75:89,90:-103.6:PASS:370,0,370 chr2 108496435 . T A 1257 PASS SNVHPOL=3;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:158:46:3:17,29:14,22:3,7:-20.3:PASS:281,0,155 chr2 108863767 . A C 2200 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:224:70:3:38,32:23,11:15,21:-17.5:PASS:259,0,321 chr2 108994808 . C G 1379 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:33:8:19,14:9,8:10,6:-16.6:PASS:163,0,209 chr2 109099572 . C G 2584 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:3:0,47:0,32:0,15:-51.6:PASS:370,141,0 chr2 109276099 . G A 260 PASS SNVHPOL=3;MQ=40;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:108:75:36:5:25,11:21,8:4,3:-12.5:PASS:110,0,262 chr2 109276178 . C T 235 PASS SNVHPOL=3;MQ=41;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:33:12:20,13:14,10:6,3:-9.5:PASS:130,0,225 chr2 109389463 . G A 2758 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:9:0,58:0,17:0,41:-56.1:PASS:370,175,0 chr2 109429146 . T A 1733 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:5:0,52:0,25:0,27:-76.3:PASS:370,156,0 chr2 109513654 . G A 1756 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:10:0,48:0,4:0,44:-22:PASS:370,144,0 chr2 109526969 . G A 1646 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:2:0,19:0,11:0,8:-32.1:PASS:318,57,0 chr2 110373197 . G A 197 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:24:8:16,8:7,4:9,4:-11.8:PASS:115,0,202 chr2 110922703 . C T 627 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:220:63:10:32,31:14,15:18,16:-28.8:PASS:255,0,269 chr2 111598958 . C T 104 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:43:15:2:11,4:6,1:5,3:-4.5:PASS:78,0,175 chr2 111907691 . T C 2177 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:10:0,48:0,33:0,15:-50.2:PASS:370,144,0 chr2 112536264 . G T 805 PASS SNVHPOL=2;MQ=23;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:0:0,16:0,12:0,4:-21.7:PASS:276,48,0 chr2 112605302 . C T 1042 PASS SNVHPOL=2;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:45:5:30,15:19,11:11,4:-10.1:PASS:126,0,293 chr2 112751928 . G A 2403 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:16:0,39:0,13:0,26:-43.8:PASS:370,117,0 chr2 112755001 . A G 2779 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:11:0,47:0,12:0,35:-42.8:PASS:370,141,0 chr2 112765973 . A G 2142 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:6:0,45:0,36:0,9:-34.1:PASS:370,135,0 chr2 112832535 . CAAT C 1480 PASS CIGAR=1M3D;RU=AAT;REFREP=1;IDREP=0;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:82:82:31:0,28:0,10:0,18:PASS:645,85,0 chr2 113089267 . T C 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:280:280:94:14:0,94:0,61:0,33:-97.4:PASS:370,283,0 chr2 113090047 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:12:0,61:0,15:0,46:-49.7:PASS:370,184,0 chr2 113147238 . A G 1907 PASS SNVHPOL=3;MQ=21;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:240:240:93:18:1,92:0,8:1,84:-27.9:PASS:370,243,0 chr2 113147666 . C A 79 PASS SNVHPOL=4;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:46:46:13:6:2,10:1,10:1,0:0.7:PASS:114,0,43 chr2 113170032 . T C 153 PASS SNVHPOL=3;MQ=8;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:35:7:0:3,4:3,4:0,0:0:PASS:70,0,51 chr2 113258916 . C T 428 PASS SNVHPOL=2;MQ=46;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:1:0,10:0,1:0,9:-9.4:PASS:186,30,0 chr2 113277949 . T C 725 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:3:0,18:0,10:0,8:-33:PASS:305,54,0 chr2 113300001 . TTCCGGCGTGTACCGAGAGACTGGCG T 1263 PASS CIGAR=1M25D;RU=.;REFREP=2;IDREP=1;MQ=59;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:101:101:38:0,31:0,21:0,10:PASS:715,104,0 chr2 113404708 . G A 668 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:56:7:31,25:11,8:20,17:-19:PASS:213,0,278 chr2 113498566 . A G 1477 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:63:1:37,26:10,6:27,20:-16.1:PASS:208,0,331 chr2 113513825 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:361:361:121:19:0,121:0,70:0,51:-145.5:PASS:370,364,0 chr2 113537223 . C A 1262 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:5:0,38:0,13:0,25:-44.7:PASS:370,114,0 chr2 113590390 . G A 1655 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:8:0,53:0,8:0,45:-31.1:PASS:370,160,0 chr2 113671378 . G T 245 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:86:14:2:4,10:3,8:1,2:-13.3:PASS:168,0,83 chr2 113671410 . A G 243 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:77:11:4:3,8:2,6:1,2:-13.3:PASS:151,0,74 chr2 113763575 . A G 1781 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:1:0,36:0,24:0,12:-41.8:PASS:370,108,0 chr2 113831945 . T C 149 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:11:5:7,4:4,3:3,1:-6.6:PASS:85,0,140 chr2 113832312 . T C 287 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:53:11:1:7,4:3,3:4,1:-5.9:PASS:88,0,118 chr2 113890304 . T C 411 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:76:76:13:4:6,7:6,3:0,4:-13.2:PASS:141,0,73 chr2 113940681 . T C 796 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:39:9:20,19:7,6:13,13:-16.5:PASS:188,0,195 chr2 113940839 . G C 881 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:149:35:11:18,17:5,13:13,4:-10.5:PASS:183,0,187 chr2 114220055 . T C 1190 PASS SNVHPOL=4;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:223:84:3:48,36:17,20:31,16:-21.5:PASS:258,0,370 chr2 116510817 . G C 1393 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:232:199:57:3:30,27:14,11:16,16:-22.5:PASS:234,0,261 chr2 116525960 . G A 2615 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:8:0,53:0,23:0,30:-71.9:PASS:370,160,0 chr2 118575215 . C G 1071 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:4:0,21:0,9:0,12:-34.3:PASS:321,63,0 chr2 118743630 . G A 881 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:7:0,31:0,15:0,16:-50:PASS:370,93,0 chr2 118771566 . C A 316 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:5:0,10:0,0:0,10:0:PASS:157,30,0 chr2 119915249 . T C 580 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:22:5:13,9:9,2:4,7:-7.7:PASS:131,0,174 chr2 120060082 . T C 1815 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:4:0,41:0,22:0,19:-60.8:PASS:370,123,0 chr2 120078778 . T C 1760 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:2:0,35:0,16:0,19:-52.5:PASS:370,105,0 chr2 120125029 . A G 689 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:5:0,15:0,6:0,9:-27.4:PASS:269,45,0 chr2 120194651 . A AGTGTGC 1103 PASS CIGAR=1M6I;RU=GTGTGC;REFREP=0;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:352:352:56:25,25:18,18:7,7:PASS:435,0,349 chr2 120199140 . A G 472 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:180:42:9:20,22:6,6:14,16:-18.2:PASS:214,0,202 chr2 120303820 . A T 1964 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:16:0,61:0,22:0,39:-69.4:PASS:370,184,0 chr2 120369300 . T C 2752 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:6:0,53:0,27:0,26:-79.5:PASS:370,160,0 chr2 120388412 . G A 2273 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:10:0,45:0,17:0,28:-55.3:PASS:370,135,0 chr2 120438523 . A G 1899 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:5:0,34:0,24:0,10:-38.2:PASS:370,102,0 chr2 120438696 . A G 2666 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:9:0,61:0,30:0,31:-90.3:PASS:370,184,0 chr2 120439230 . C G 2790 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:11:0,50:0,27:0,23:-71.9:PASS:370,150,0 chr2 120848049 . C T 329 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:184:53:8:29,24:14,9:15,15:-19.8:PASS:219,0,266 chr2 120885310 . G A 1194 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:58:6:31,27:16,16:15,11:-22.1:PASS:234,0,278 chr2 120980428 . G C 983 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:69:69:28:7:9,19:0,3:9,16:-17.3:PASS:229,0,66 chr2 121106850 . C T 235 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:107:36:15:22,14:11,7:11,7:-16:PASS:142,0,239 chr2 121744056 . G A 525 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:345:317:98:30:48,50:4,2:44,48:-7.6:PASS:351,0,343 chr2 121746956 . G T 3070 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:534:516:166:33:82,84:52,57:30,27:-40.2:PASS:370,0,370 chr2 121747406 . G A 3070 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:543:510:257:63:148,108:79,45:69,63:-41.9:PASS:370,0,370 chr2 121747429 . A G 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:701:701:234:68:0,234:0,121:0,113:-305.9:PASS:370,370,0 chr2 121981950 . A G 139 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:56:24:6:1:3,3:1,3:2,0:1.4:PASS:59,0,83 chr2 121989489 . G A 396 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:89:56:17:7:12,5:6,2:6,3:-9.2:PASS:91,0,168 chr2 122216419 . A G 1061 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:168:51:10:28,23:16,17:12,6:-14.3:PASS:202,0,252 chr2 125192068 . T C 851 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:38:4:22,16:17,12:5,4:-14.7:PASS:161,0,228 chr2 127453664 . A C 583 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:62:29:24:7:16,8:2,0:14,8:1.4:PASS:64,0,197 chr2 127826533 . A G 306 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:160:35:9:15,20:7,12:8,8:-21.2:PASS:225,0,157 chr2 128180872 . G T 2182 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:18:0,37:0,30:0,7:-29.7:PASS:370,111,0 chr2 128321770 . G A 501 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:22:8:13,9:7,4:6,5:-14.7:PASS:131,0,176 chr2 128392242 . C T 313 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:124:26:11:13,13:11,6:2,7:-14.7:PASS:159,0,154 chr2 128393862 . G A 375 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:144:31:5:13,18:6,13:7,5:-15.3:PASS:205,0,141 chr2 128400608 . C T 462 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:5:0,10:0,8:0,2:-15.3:PASS:210,30,0 chr2 128870808 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:3:0,67:0,20:0,47:-63.2:PASS:370,202,0 chr2 128878014 . G A 1860 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:3:0,37:0,18:0,19:-58.4:PASS:370,111,0 chr2 130737955 . T A 429 PASS SNVHPOL=2;MQ=42;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:195:118:9:75,43:44,32:31,11:-9.8:PASS:230,0,370 chr2 130738163 . G A 3070 PASS SNVHPOL=5;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:417:417:134:14:64,70:27,16:37,54:-22.9:PASS:370,0,370 chr2 130832170 . C T 62 PASS SNVHPOL=5;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:37:37:6:0:2,4:2,1:0,3:-7.3:PASS:97,0,34 chr2 130832256 . A G 91 PASS SNVHPOL=5;MQ=30;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:63:31:6:2:3,3:1,1:2,2:-5:PASS:66,0,82 chr2 130832292 . T A 274 PASS SNVHPOL=3;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:10:1:7,3:5,1:2,2:-4.1:PASS:70,0,126 chr2 130832531 . A G 433 PASS SNVHPOL=2;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:29:9:23,6:6,4:17,2:0.3:PASS:65,0,268 chr2 130899804 . T C 296 PASS SNVHPOL=2;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:68:35:16:3:10,6:8,6:2,0:1.4:PASS:69,0,149 chr2 130910682 . G A 227 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:106:15:2:7,8:3,5:4,3:-13:PASS:141,0,127 chr2 130949677 . G T 409 PASS SNVHPOL=6;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:77:32:5:11,21:0,6:11,15:-19.1:PASS:217,0,74 chr2 130951581 . A G 1083 PASS SNVHPOL=2;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:172:45:28:21,24:17,19:4,5:-18.3:PASS:234,0,169 chr2 130951584 . T C 1114 PASS SNVHPOL=2;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:168:50:25:22,28:19,23:3,5:-19:PASS:263,0,165 chr2 130952725 . C T 762 PASS SNVHPOL=2;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:48:6:29,19:15,13:14,6:-13.6:PASS:164,0,281 chr2 131103624 . C T 249 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:164:35:13:17,18:6,6:11,12:-19.3:PASS:199,0,185 chr2 131128498 . A G 189 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:23:7:13,10:1,1:12,9:-8:PASS:122,0,139 chr2 131221445 . G A 150 PASS SNVHPOL=2;MQ=16;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:52:20:4:0:2,2:1,0:1,2:0.7:PASS:55,0,68 chr2 131245713 . C G 738 PASS SNVHPOL=2;MQ=16;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:0:0,16:0,5:0,11:-23.3:PASS:272,48,0 chr2 131266353 . G A 51 PASS SNVHPOL=2;MQ=33;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:24:23:4:16,7:16,7:0,0:0:PASS:59,0,163 chr2 131266530 . C A 834 PASS SNVHPOL=3;MQ=45;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:39:24:25,14:5,5:20,9:-15.5:PASS:139,0,257 chr2 131266724 . G A,T 72 PASS SNVHPOL=2;MQ=16;AC=1,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:22:9:3:5,4,0:0,0,0:5,4,0:0:PASS:56,0,73,71,85,156 chr2 131356322 . C T 293 PASS SNVHPOL=3;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:57:20:29,28:4,4:25,24:-13.4:PASS:228,0,239 chr2 131356495 . T G 159 PASS SNVHPOL=2;MQ=30;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:98:40:6:22,18:0,0:22,18:0:PASS:133,0,179 chr2 131377707 . A G 844 PASS SNVHPOL=3;MQ=27;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:0:0,13:0,0:0,13:0:PASS:188,39,0 chr2 131414176 . C T 1510 PASS SNVHPOL=5;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:61:143:14:106,37:59,18:47,19:-5.3:PASS:96,0,370 chr2 131414338 . G A 374 PASS SNVHPOL=4;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:301:268:116:28:67,49:33,20:34,29:-26.4:PASS:303,0,370 chr2 131414640 . C T 167 PASS SNVHPOL=2;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:102:72:19:8:11,7:1,1:10,6:-8:PASS:106,0,142 chr2 131415082 . T C 52 PASS SNVHPOL=4;MQ=44;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:82:49:20:2:14,6:4,3:10,3:-9.2:PASS:83,0,191 chr2 131415345 . C T 78 PASS SNVHPOL=3;MQ=18;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:22:5:2:3,2:1,1:2,1:-6.2:PASS:56,0,87 chr2 131487673 . A C 1699 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:11:0,35:0,18:0,17:-56.8:PASS:370,105,0 chr2 131520663 . T C 1188 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:5:0,21:0,12:0,9:-34.1:PASS:332,63,0 chr2 131688587 . G A 234 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:63:9:3:5,4:4,3:1,1:-8:PASS:98,0,101 chr2 131796548 . G A 254 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:111:25:13:9,16:4,8:5,8:-23.3:PASS:203,0,108 chr2 132010570 . G T 65 PASS SNVHPOL=2;MQ=38;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:93:8:67,26:19,13:48,13:-2.1:PASS:100,0,370 chr2 132021683 . G C 73 PASS SNVHPOL=3;MQ=40;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:39:7:27,12:11,7:16,5:-9.9:PASS:108,0,262 chr2 132021903 . G A 20 PASS SNVHPOL=5;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:53:20:54:6:41,13:12,2:29,11:-1.5:PASS:55,0,370 chr2 132237983 . A G 137 PASS SNVHPOL=2;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:43:18:31,12:14,7:17,5:-9.3:PASS:105,0,307 chr2 132238169 . A G 143 PASS SNVHPOL=3;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:38:10:24,14:10,8:14,6:-12.3:PASS:138,0,247 chr2 132288362 . T C 90 PASS SNVHPOL=2;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:22:4:12,10:3,2:9,8:-9.8:PASS:121,0,159 chr2 132290464 . G A 298 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:40:10:23,17:12,9:11,8:-19.2:PASS:171,0,228 chr2 132290912 . G A 244 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:105:20:3:7,13:3,2:4,11:-11.9:PASS:178,0,102 chr2 133174764 . C T 283 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:33:7:21,12:10,3:11,9:-7.4:PASS:119,0,236 chr2 133174999 . A G 335 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:167:35:9:16,19:6,13:10,6:-16.4:PASS:213,0,164 chr2 133539566 . G A 1431 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:263:262:68:10:32,36:18,29:14,7:-15.6:PASS:304,0,260 chr2 133540605 . G T 1386 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:270:237:76:13:41,35:26,16:15,19:-25.4:PASS:272,0,333 chr2 133541444 . T C 910 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:219:52:8:24,28:14,15:10,13:-29.7:PASS:262,0,217 chr2 133541454 . A G 868 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:207:49:10:22,26:12,15:10,11:-25.5:PASS:254,0,204 chr2 133541575 . C T 813 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:173:43:9:21,22:12,18:9,4:-11.7:PASS:209,0,179 chr2 133542014 . T C 1113 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:52:15:31,21:21,5:10,16:-6.9:PASS:186,0,287 chr2 133542545 . G A 1925 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:360:327:107:17:56,51:24,12:32,39:-18.2:PASS:361,0,370 chr2 133542585 . C G 1676 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:328:295:88:16:45,43:26,18:19,25:-29:PASS:330,0,346 chr2 133554288 . A G 1011 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:3:0,17:0,8:0,9:-32.6:PASS:296,51,0 chr2 135711516 . C T 3070 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:301:301:101:14:0,101:0,47:0,54:-132.1:PASS:370,304,0 chr2 135711657 . G A 1973 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:324:324:107:21:48,59:30,33:18,26:-49.3:PASS:370,0,321 chr2 135745392 . G A 1054 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:316:283:137:13:82,55:30,25:52,30:-32.8:PASS:317,0,370 chr2 135745545 . C T 762 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:311:278:97:13:51,46:25,22:26,24:-35.1:PASS:313,0,370 chr2 135745722 . A G 720 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:223:63:3:32,31:7,10:25,21:-25.1:PASS:258,0,272 chr2 135756378 . C T 1348 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:207:73:7:41,32:28,19:13,13:-27.5:PASS:242,0,347 chr2 135911422 . T C 1808 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:263:70:9:33,37:7,14:26,23:-31.7:PASS:302,0,262 chr2 136393658 . A G 497 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:297:264:78:7:40,38:20,14:20,24:-25.4:PASS:298,0,319 chr2 136511817 . A G 333 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:67:11:41,26:13,8:28,18:-17:PASS:192,0,365 chr2 136546110 . A G 803 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:143:26:8:12,14:3,3:9,11:-15.2:PASS:178,0,153 chr2 136555659 . T C 573 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:96:14:1:7,7:1,3:6,4:-13.4:PASS:131,0,109 chr2 136561557 . G A 1206 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:184:42:7:20,22:13,12:7,10:-25.2:PASS:221,0,187 chr2 136575199 . G T 1195 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:50:8:30,20:17,11:13,9:-18.6:PASS:168,0,286 chr2 136575534 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:375:375:139:31:1,138:0,89:1,49:-128.8:PASS:370,370,0 chr2 136590746 . C T 277 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:158:31:4:14,17:11,7:3,10:-16.6:PASS:196,0,159 chr2 136594158 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:395:395:125:31:59,66:28,30:31,36:-50:PASS:370,0,370 chr2 137814477 . C G 618 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:315:282:98:19:52,46:34,31:18,15:-26.3:PASS:317,0,370 chr2 137917922 . T A 267 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:38:8:23,15:6,6:17,9:-16.6:PASS:146,0,237 chr2 138420996 . A G 1409 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:299:266:94:12:51,43:31,21:20,22:-30.3:PASS:301,0,370 chr2 139429068 . G A 2783 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:16:0,79:0,35:0,44:-103.1:PASS:370,238,0 chr2 141032088 . C T 1059 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:210:51:9:23,28:12,15:11,13:-29.4:PASS:263,0,207 chr2 141116447 . G T 357 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:172:33:1:15,18:7,5:8,13:-16.6:PASS:208,0,174 chr2 141260668 . A G 1400 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:314:281:84:7:42,42:15,14:27,28:-26.8:PASS:316,0,330 chr2 141274576 . T C 3021 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:6:0,66:0,24:0,42:-73.8:PASS:370,199,0 chr2 141571329 . T C 2423 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:220:93:8:54,39:20,16:34,23:-27.1:PASS:255,0,370 chr2 141707868 . G T 1533 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:6:0,44:0,33:0,11:-39.5:PASS:370,132,0 chr2 141751592 . G A 928 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:49:4:30,19:24,12:6,7:-17.9:PASS:163,0,284 chr2 141816621 . A G 2915 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:4:0,58:0,10:0,48:-35.7:PASS:370,175,0 chr2 144899559 . C A 1057 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:2:0,39:0,17:0,22:-55.9:PASS:370,117,0 chr2 145162506 . G A 522 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:176:39:4:18,21:8,11:10,10:-24.3:PASS:214,0,176 chr2 148730367 . G C 1416 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:171:45:3:24,21:11,11:13,10:-22:PASS:206,0,238 chr2 149799216 . T C 153 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:61:13:4:8,5:3,3:5,2:-10.5:PASS:96,0,142 chr2 149806388 . C T 313 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:140:26:8:12,14:9,7:3,7:-16.9:PASS:175,0,153 chr2 150432976 . C T 1575 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:56:4:36,20:29,12:7,8:-15.1:PASS:164,0,341 chr2 152132130 . A G 418 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:68:3:40,28:27,12:13,16:-14.4:PASS:201,0,346 chr2 152138522 . T C 853 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:197:48:6:22,26:19,17:3,9:-25.6:PASS:242,0,194 chr2 152311570 . G A 762 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:418:385:127:12:64,63:33,26:31,37:-36.4:PASS:370,0,370 chr2 152314385 . G A 468 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:87:3:57,30:22,12:35,18:-20:PASS:181,0,370 chr2 152320118 . G A 1022 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:453:453:168:19:75,93:37,47:38,46:-75.9:PASS:370,0,370 chr2 152322095 . A T 1748 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:250:250:84:22:0,84:0,60:0,24:-71.6:PASS:370,253,0 chr2 152331418 . C G 1095 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:16:0,43:0,26:0,17:-55:PASS:370,129,0 chr2 152346494 . A C 577 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:171:47:11:24,22:14,15:10,7:-16.8:PASS:206,0,225 chr2 152346979 . T C 442 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:158:33:6:14,19:4,6:10,13:-19.5:PASS:211,0,155 chr2 152352843 . C G 368 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:55:4:32,23:18,13:14,10:-21.6:PASS:194,0,290 chr2 152387553 . T C 425 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:223:62:12:27,35:17,13:10,22:-24.5:PASS:303,0,220 chr2 152420361 . C T 386 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:186:48:14:21,27:6,11:15,16:-25.9:PASS:249,0,183 chr2 152422076 . C G 411 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:73:7:45,28:26,17:19,11:-18.7:PASS:187,0,370 chr2 152422087 . A G 348 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:69:8:46,23:26,14:20,9:-15.2:PASS:156,0,370 chr2 152432311 . T C 1571 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:215:56:4:25,31:11,11:14,20:-24.5:PASS:281,0,212 chr2 152436012 . T G 145 PASS SNVHPOL=2;MQ=23;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:23:3:12,11:1,2:11,9:-12.5:PASS:138,0,144 chr2 152490219 . A G 373 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:40:11:21,19:18,13:3,6:-21.2:PASS:197,0,219 chr2 152490458 . A G 2810 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:8:0,53:0,17:0,36:-55.5:PASS:370,159,0 chr2 152500449 . C G 495 PASS SNVHPOL=5;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:207:66:13:35,31:23,15:12,16:-23.5:PASS:241,0,288 chr2 152527572 . C T 2447 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:5:0,47:0,39:0,8:-30.6:PASS:370,141,0 chr2 152531077 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:350:350:131:17:1,130:0,47:1,83:-133.3:PASS:370,353,0 chr2 152536498 . T A 2576 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:1:0,48:0,8:0,40:-32.4:PASS:370,144,0 chr2 152573981 . A G 2019 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:3:0,43:0,19:0,24:-60.6:PASS:370,129,0 chr2 153435434 . C T 1738 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:8:0,41:0,25:0,16:-51.9:PASS:370,123,0 chr2 153476066 . G GCCA 350 PASS CIGAR=1M3I;RU=CCA;REFREP=0;IDREP=1;MQ=59;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:24:24:8:2,4:2,0:0,4:PASS:75,0,21 chr2 153533260 . G A 644 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:251:68:8:31,37:9,8:22,29:-19.3:PASS:299,0,248 chr2 157406249 . G A 1662 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:6:0,32:0,11:0,21:-39.4:PASS:370,96,0 chr2 158115129 . A T 579 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:261:228:79:19:44,35:26,17:18,18:-27:PASS:263,0,354 chr2 158140806 . G C 481 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:171:40:2:17,23:10,20:7,3:-12.1:PASS:238,0,168 chr2 158152916 . G A 519 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:44:2:22,22:13,17:9,5:-13.1:PASS:212,0,218 chr2 158157361 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:21:0,71:0,36:0,35:-104.3:PASS:370,214,0 chr2 158443889 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:9:0,66:0,11:0,55:-39.8:PASS:370,199,0 chr2 158626980 . C T 2160 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:17:0,28:0,12:0,16:-43.2:PASS:370,84,0 chr2 159028664 . A T 2346 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:5:0,57:0,38:0,19:-59.3:PASS:370,172,0 chr2 159166069 . T C 2436 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:7:0,56:0,25:0,31:-76.4:PASS:370,169,0 chr2 159195282 . C T 691 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:257:72:5:36,36:26,32:10,4:-12.6:PASS:292,0,289 chr2 159196771 . T C 779 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:255:88:5:48,40:35,23:13,17:-31.5:PASS:290,0,370 chr2 159514812 . G A 751 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:216:69:6:37,32:13,9:24,23:-19.2:PASS:251,0,308 chr2 159517857 . C T 354 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:77:15:3:5,10:2,8:3,2:-11.3:PASS:156,0,74 chr2 159954175 . C T 498 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:35:5:18,17:12,12:6,5:-16.4:PASS:184,0,195 chr2 160019863 . A G 2258 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:4:0,54:0,38:0,16:-52.7:PASS:370,163,0 chr2 160035195 . C T 828 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:6:0,31:0,14:0,17:-45.9:PASS:370,93,0 chr2 160035207 . T C 2281 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:3:0,35:0,17:0,18:-54.6:PASS:370,105,0 chr2 160086640 . G T 394 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:218:64:11:33,31:14,25:19,6:-8.3:PASS:252,0,271 chr2 160086653 . C T 466 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:239:239:66:8:30,36:12,28:18,8:-13.3:PASS:305,0,236:160086653 chr2 160086654 . A G 514 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:235:235:67:7:30,37:11,27:19,10:-16.7:PASS:317,0,232:160086653 chr2 160112881 . G T 1587 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:181:59:6:23,36:6,10:17,26:-26.3:PASS:337,0,178 chr2 160136337 . G A 2493 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:11:0,43:0,33:0,10:-37.5:PASS:370,129,0 chr2 160139284 . A C 577 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:138:60:12:19,41:14,30:5,11:-28.4:PASS:370,0,135 chr2 160182302 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:400:400:134:14:0,134:0,71:0,63:-177.6:PASS:370,370,0 chr2 160289863 . T C 874 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:95:18:57,38:18,5:39,33:-8.3:PASS:247,0,370 chr2 160294842 . A G 672 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:287:254:85:7:46,39:29,25:17,14:-26.3:PASS:288,0,370 chr2 160310246 . A G 615 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:196:48:17:23,25:13,14:10,11:-25.1:PASS:231,0,211 chr2 160604812 . C T 875 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:320:287:97:11:51,46:24,19:27,27:-30.1:PASS:321,0,370 chr2 160604936 . G A 517 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:255:222:95:9:56,39:25,12:31,27:-17:PASS:257,0,370 chr2 160605268 . T C 2539 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:11:0,65:0,28:0,37:-85.1:PASS:370,196,0 chr2 160639970 . T C 493 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:199:48:4:23,25:9,8:14,17:-19.5:PASS:234,0,215 chr2 160676350 . T C 550 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:244:79:12:42,37:21,25:21,12:-19.2:PASS:279,0,340 chr2 160676427 . C A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:13:0,76:0,25:0,51:-73.6:PASS:370,229,0 chr2 160710153 . T G 745 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:66:12:38,28:17,12:21,16:-22.2:PASS:218,0,332 chr2 160710922 . T C 2756 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:6:0,77:0,52:0,25:-76.2:PASS:370,232,0 chr2 160711045 . G C 1227 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:270:245:68:12:34,34:8,8:26,26:-20.9:PASS:280,0,268 chr2 160808075 . C T 427 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:182:41:6:18,23:4,9:14,14:-25.8:PASS:230,0,179 chr2 160876771 . T C 583 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:46:2:24,22:5,8:19,14:-24:PASS:212,0,230 chr2 160879360 . C T 735 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:64:10:35,29:9,10:26,19:-23.4:PASS:228,0,299 chr2 160885418 . G C 293 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:27:6:15,12:4,3:11,9:-14.6:PASS:141,0,176 chr2 160885442 . T C 760 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:10:0,22:0,7:0,15:-28.3:PASS:336,66,0 chr2 160901517 . A G 1348 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:194:50:9:25,25:6,14:19,11:-17.9:PASS:229,0,217 chr2 161029218 . G A 280 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:54:3:36,18:14,5:22,13:-10.7:PASS:138,0,344 chr2 162821644 . C T 508 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:168:64:8:23,40:9,17:14,23:-37.5:PASS:365,0,165 chr2 162876768 . G A 270 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:140:25:10:12,13:8,10:4,3:-14.6:PASS:175,0,153 chr2 162929922 . C T 403 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:148:130:23:5:11,12:5,9:6,3:-13.2:PASS:165,0,145 chr2 162929979 . A G 323 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:20:5:10,10:5,4:5,6:-14.5:PASS:148,0,152 chr2 163124051 . C T 1656 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:249:109:16:63,46:19,19:44,27:-30.8:PASS:284,0,370 chr2 163128824 . T C 1835 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:3:0,41:0,18:0,23:-58.1:PASS:370,123,0 chr2 163137983 . T C 691 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:60:7:34,26:11,7:23,19:-16.3:PASS:204,0,310 chr2 165551201 . T C 610 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:281:248:75:12:39,36:18,22:21,14:-23.9:PASS:283,0,314 chr2 165987772 . T G 674 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:305:272:89:4:47,42:30,32:17,10:-18.4:PASS:307,0,362 chr2 165996107 . T A 1106 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:11:0,53:0,17:0,36:-55.7:PASS:370,160,0 chr2 166003479 . G A 598 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:284:263:72:13:35,37:7,17:28,20:-29.8:PASS:298,0,282 chr2 166221706 . C T 416 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:182:40:10:19,21:14,7:5,14:-15.8:PASS:219,0,183 chr2 166535883 . G C 365 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:139:55:11:34,21:25,12:9,9:-17.9:PASS:174,0,309 chr2 166788336 . T C 841 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:39:0:22,17:11,11:11,6:-14.9:PASS:176,0,229 chr2 166797646 . C T 444 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:278:277:76:7:36,40:12,18:24,22:-37.3:PASS:324,0,275 chr2 166848913 . C T 2241 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:872:839:316:45:164,152:75,72:89,80:-97.9:PASS:370,0,370 chr2 166892788 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:416:383:122:7:62,60:37,31:25,29:-45.9:PASS:370,0,370 chr2 166897864 . A G 1798 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:51:7:30,21:11,8:19,13:-17.9:PASS:169,0,288 chr2 166903445 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:299:90:15:45,44:16,13:29,31:-25:PASS:334,0,336 chr2 167099158 . A G 3059 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:8:0,63:0,17:0,46:-55:PASS:370,190,0 chr2 167144974 . A T 2191 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:247:214:86:10:49,37:37,24:12,13:-26.7:PASS:249,0,370 chr2 167144995 . T C 2306 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:205:89:11:53,36:36,21:17,15:-26.9:PASS:240,0,370 chr2 167145142 . A G 2018 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:285:252:75:14:38,37:4,12:34,25:-30.5:PASS:286,0,296 chr2 167163043 . T C 924 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:49:7:27,22:18,12:9,10:-22:PASS:199,0,251 chr2 167279922 . C A 1162 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:227:63:8:32,31:6,7:26,24:-20.1:PASS:262,0,273 chr2 167334085 . G T 1576 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:206:71:5:28,43:14,25:14,18:-36.1:PASS:370,0,203 chr2 168041087 . C T 389 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:147:68:14:42,26:18,18:24,8:-7.9:PASS:182,0,362 chr2 168099738 . T C 626 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:242:65:11:32,33:18,16:14,17:-29.7:PASS:276,0,263 chr2 168099775 . C G 462 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:77:13:45,32:25,17:20,15:-25.4:PASS:225,0,368 chr2 168099796 . T C 542 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:243:210:77:16:43,34:25,20:18,14:-25:PASS:245,0,353 chr2 168103304 . G A 1312 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:413:413:147:15:67,80:41,41:26,39:-62.4:PASS:370,0,370 chr2 168103863 . G A 1062 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:363:330:109:18:56,53:36,35:20,18:-31.4:PASS:365,0,370 chr2 168103925 . A G 1197 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:421:390:124:10:62,62:33,34:29,28:-44.9:PASS:370,0,370 chr2 168104199 . C T 1142 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:367:334:118:19:63,55:29,34:34,21:-27.9:PASS:369,0,370 chr2 168104370 . A C 1220 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:432:427:131:14:64,67:39,35:25,32:-50.6:PASS:370,0,370 chr2 168104627 . G A 1007 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:352:319:109:22:57,52:20,16:37,36:-27.4:PASS:353,0,370 chr2 168104988 . G T 825 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:212:71:15:29,42:16,31:13,11:-23.6:PASS:358,0,209 chr2 168106085 . G A 1567 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:576:543:184:14:93,91:46,54:47,37:-50.2:PASS:370,0,370 chr2 168106246 . G A 1406 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:459:426:158:16:85,73:43,35:42,38:-49.6:PASS:370,0,370 chr2 168107155 . G A 1260 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:419:407:126:21:62,64:34,21:28,43:-27.7:PASS:370,0,370 chr2 168107491 . A G 777 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:246:213:79:21:45,34:17,13:28,21:-24.4:PASS:248,0,365 chr2 168108357 . A G 677 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:216:66:10:35,31:10,17:25,14:-19.7:PASS:251,0,299 chr2 168115710 . T G 792 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:281:248:119:10:71,48:35,27:36,21:-27.3:PASS:283,0,370 chr2 168115769 . G C 589 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:164:93:12:59,34:22,19:37,15:-14:PASS:199,0,370 chr2 168115797 . G C 565 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:156:81:14:51,30:16,12:35,18:-21.1:PASS:191,0,370 chr2 169707428 . C T 502 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:204:59:9:25,34:19,17:6,17:-30.9:PASS:309,0,201 chr2 169721377 . G A 2961 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:4:0,62:0,34:0,28:-83.2:PASS:370,187,0 chr2 169721381 . A G 539 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:187:59:6:32,27:21,10:11,17:-16.9:PASS:222,0,287 chr2 169764176 . G C 453 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:231:231:58:7:27,31:17,18:10,13:-29.8:PASS:279,0,228 chr2 169764546 . C G 444 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:208:55:9:28,27:17,12:11,15:-22.7:PASS:243,0,246 chr2 169842746 . T C 701 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:219:58:8:29,29:11,16:18,13:-23.7:PASS:253,0,256 chr2 169853220 . G A 345 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:44:2:24,20:12,9:12,11:-20.7:PASS:186,0,228 chr2 169997051 . G A 410 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:35:6:20,15:3,7:17,8:-14.9:PASS:158,0,223 chr2 170003432 . T G 1249 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:244:211:84:11:49,35:21,10:28,25:-15.4:PASS:246,0,370 chr2 170010985 . T C 1908 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:236:62:5:30,32:20,23:10,9:-19.7:PASS:271,0,257 chr2 170025083 . A G 872 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:326:324:95:17:45,50:34,30:11,20:-39.3:PASS:365,0,323 chr2 170053505 . C T 1731 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:811:778:313:53:168,145:74,68:94,77:-92.9:PASS:370,0,370 chr2 170092395 . A G 915 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:195:48:7:23,25:18,14:5,11:-24.2:PASS:229,0,209 chr2 170115588 . T C 895 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:199:45:10:21,24:15,11:6,13:-21.8:PASS:234,0,203 chr2 170129528 . G A 2639 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:7:0,43:0,21:0,22:-66.2:PASS:370,129,0 chr2 170150671 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:666:633:235:25:123,112:70,80:53,32:-36:PASS:370,0,370 chr2 170175334 . T C 822 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:43:43:29:4:1,28:0,13:1,15:-40.4:PASS:364,46,0 chr2 170218847 . C G 699 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:4:0,12:0,8:0,4:-20.9:PASS:230,36,0 chr2 170403030 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:313:313:105:13:0,105:0,62:0,43:-123:PASS:370,316,0 chr2 170411693 . T C 3042 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:4:0,68:0,42:0,26:-78.1:PASS:370,205,0 chr2 170605981 . C T 2881 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:6:0,50:0,41:0,9:-33.8:PASS:370,150,0 chr2 170678476 . G A 368 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:157:41:8:17,24:7,14:10,10:-22.9:PASS:241,0,154 chr2 171070912 . T C 786 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:88:26:5:17,9:7,6:10,3:-10:PASS:123,0,199 chr2 171073887 . G A 940 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:213:180:46:12:24,22:14,16:10,6:-16.4:PASS:215,0,231 chr2 171225841 . A G 269 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:65:3:40,25:20,10:20,15:-16.3:PASS:184,0,351 chr2 171240249 . C T 224 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:148:115:25:7:13,12:6,8:7,4:-13.1:PASS:150,0,162 chr2 171260787 . G A 2699 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:10:0,57:0,41:0,16:-53.4:PASS:370,172,0 chr2 171260797 . A G 434 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:144:65:9:41,24:26,18:15,6:-13.1:PASS:179,0,356 chr2 171260820 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:10:0,67:0,38:0,29:-86.7:PASS:370,202,0 chr2 171355198 . A G 2279 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:10:0,45:0,18:0,27:-58.5:PASS:370,135,0 chr2 171356274 . G A 810 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:3:0,34:0,6:0,28:-27.2:PASS:370,102,0 chr2 171627676 . T G 239 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:1:0,7:0,5:0,2:-14.3:PASS:160,21,0 chr2 171678625 . T C 801 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:267:234:102:29:59,43:41,29:18,14:-24:PASS:269,0,370 chr2 171715387 . G A 1217 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:169:38:9:19,19:9,6:10,13:-17.3:PASS:204,0,188 chr2 171910313 . C T 536 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:248:64:9:31,33:10,19:21,14:-24.2:PASS:284,0,253 chr2 172180771 . A G 2882 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:13:0,65:0,33:0,32:-91.8:PASS:370,196,0 chr2 172188368 . C T 429 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:24:2:14,10:4,3:10,7:-13.6:PASS:140,0,182 chr2 172216969 . T C 934 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:11:0,27:0,11:0,16:-40.2:PASS:370,81,0 chr2 172291616 . C T 478 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:37:3:20,17:11,11:9,6:-17:PASS:183,0,210 chr2 172309651 . T A 266 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:33:2:19,14:9,6:10,8:-17.3:PASS:161,0,209 chr2 172411273 . G A 2746 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:14:0,51:0,11:0,40:-40.3:PASS:370,153,0 chr2 172725301 . A G 347 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:28:5:16,12:8,5:8,7:-13.7:PASS:140,0,193 chr2 173339808 . G A 1681 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:205:68:5:28,40:9,10:19,30:-24:PASS:347,0,202 chr2 173352130 . G A 903 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:311:293:82:9:40,42:16,23:24,19:-30.8:PASS:328,0,309 chr2 173354358 . A G 543 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:371:339:102:8:51,51:16,13:35,38:-24.9:PASS:370,0,370 chr2 173460640 . T C 789 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:252:229:61:14:30,31:16,13:14,18:-24:PASS:263,0,249 chr2 174128513 . C T 1432 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:5:0,69:0,40:0,29:-87.9:PASS:370,208,0 chr2 175292580 . TTCAAATTTATCAG T 3070 PASS CIGAR=1M13D;RU=TCAAATTTATCAG;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:557:523:113:58,36:30,17:28,19:PASS:554,0,889 chr2 175300997 . G A 2084 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:283:283:80:12:38,42:30,26:8,16:-36.8:PASS:338,0,280 chr2 175436940 . G A 2185 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:24:0,58:0,13:0,45:-43.3:PASS:370,175,0 chr2 175613477 . T A 490 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:274:241:77:8:41,36:17,12:24,24:-22.3:PASS:276,0,334 chr2 176964904 . G A 1452 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:80:34:53,27:29,15:24,12:-16.8:PASS:162,0,370 chr2 176988015 . C A 327 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:137:61:23:37,24:28,17:9,7:-19.2:PASS:171,0,339 chr2 176995262 . C T 120 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:94:62:8:1:4,4:3,2:1,2:-10.6:PASS:97,0,101 chr2 176995607 . G A 483 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:134:51:8:17,34:10,17:7,17:-36:PASS:330,0,131 chr2 177016728 . T C 745 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:3:0,31:0,8:0,23:-31.9:PASS:370,93,0 chr2 177034121 . G T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:430:430:144:51:0,144:0,113:0,31:-91:PASS:370,370,0 chr2 177036754 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:13:0,53:0,20:0,33:-61.7:PASS:370,160,0 chr2 178417142 . C T 260 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:40:25:21,19:6,9:15,10:-19.2:PASS:192,0,213 chr2 178417225 . C T 261 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:187:154:40:14:21,19:4,5:17,14:-17:PASS:189,0,217 chr2 178481818 . G T 3051 PASS SNVHPOL=3;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:472:472:158:30:0,158:0,65:0,93:-176.6:PASS:370,370,0 chr2 178482094 . C T 1813 PASS SNVHPOL=2;MQ=51;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:17:0,89:0,59:0,30:-89.1:PASS:370,268,0 chr2 178494173 . G GGGA 3070 PASS CIGAR=1M3I;RU=GGA;REFREP=2;IDREP=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:200:200:87:2,79:1,48:1,31:PASS:999,203,0 chr2 178682603 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:1169:1136:544:62:301,243:153,146:148,97:-93.4:PASS:370,0,370 chr2 178936373 . T G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:779:779:260:40:0,260:0,91:0,169:-247:PASS:370,370,0 chr2 178936614 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:18:0,70:0,27:0,43:-81.1:PASS:370,211,0 chr2 179203797 . G A 1083 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:3:0,54:0,32:0,22:-69.1:PASS:370,163,0 chr2 179358665 . A G 824 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:42:0:21,21:9,6:12,15:-15.7:PASS:201,0,204 chr2 179395958 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:18:0,81:0,43:0,38:-109.9:PASS:370,244,0 chr2 179396354 . G A 1633 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:294:294:85:18:40,45:17,21:23,24:-38.8:PASS:345,0,291 chr2 179397561 . C T 2532 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:472:439:144:18:73,71:38,36:35,35:-54.4:PASS:370,0,370 chr2 179398823 . G A 2415 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:326:326:119:14:52,67:28,29:24,38:-47.4:PASS:370,0,323 chr2 179406191 . C T 1528 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:77:13:45,31:18,13:27,18:-24.8:PASS:223,0,370 chr2 179412452 . C T 532 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:295:262:83:18:44,39:16,20:28,19:-29:PASS:297,0,343 chr2 179412966 . G A 1846 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:285:252:92:14:51,41:33,27:18,14:-25.2:PASS:287,0,370 chr2 179413110 . G A 2601 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:397:364:129:23:68,61:35,37:33,24:-33.9:PASS:370,0,370 chr2 179414318 . C T 656 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:329:329:108:10:50,58:29,46:21,12:-19.7:PASS:370,0,326 chr2 179416556 . A C 567 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:284:98:7:52,46:28,28:24,18:-29.1:PASS:319,0,370 chr2 179416659 . C T 717 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:354:354:107:8:51,55:25,28:26,27:-46.2:PASS:370,0,351 chr2 179421694 . A G 2094 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:8:0,50:0,34:0,16:-52.2:PASS:370,150,0 chr2 179426406 . T C 444 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:197:66:14:36,30:14,18:22,12:-18:PASS:232,0,301 chr2 179427186 . A G 2919 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:14:0,71:0,43:0,28:-84.1:PASS:370,214,0 chr2 179427536 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:427:427:143:20:0,143:0,82:0,61:-169.8:PASS:370,370,0 chr2 179428061 . C T 626 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:391:358:113:19:57,56:34,34:23,22:-36:PASS:370,0,370 chr2 179430997 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:529:496:169:18:87,82:34,40:53,42:-56.3:PASS:370,0,370 chr2 179432183 . C G 726 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:431:398:135:12:70,65:45,30:25,35:-38:PASS:370,0,370 chr2 179435337 . T G 623 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:346:313:106:13:55,51:24,22:31,29:-36.3:PASS:348,0,370 chr2 179436020 . G A 1515 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:199:71:5:28,43:18,31:10,12:-27.1:PASS:369,0,195 chr2 179441917 . T C 720 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:295:262:100:13:56,44:38,25:18,19:-32.1:PASS:296,0,370 chr2 179443540 . A G 454 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:243:210:81:7:46,35:33,26:13,9:-18.3:PASS:245,0,370 chr2 179444768 . C G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:310:310:104:25:0,104:0,63:0,41:-118.2:PASS:370,313,0 chr2 179444939 . C T 2206 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:317:103:9:46,57:19,18:27,39:-32.4:PASS:370,0,314 chr2 179447848 . T C 2756 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:9:0,67:0,26:0,41:-79.1:PASS:370,202,0 chr2 179451420 . G A 2751 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:6:0,80:0,54:0,26:-77.9:PASS:370,241,0 chr2 179454394 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:9:0,81:0,41:0,40:-115.4:PASS:370,244,0 chr2 179455207 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:377:377:131:29:0,130:0,81:0,49:-139.2:PASS:370,370,0 chr2 179457147 . G A 2278 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:296:296:108:14:47,61:29,38:18,23:-43.1:PASS:370,0,293 chr2 179458591 . C T 2128 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:268:77:32:36,41:16,18:20,23:-34.8:PASS:332,0,265 chr2 179464527 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:338:338:117:8:0,116:0,41:0,75:-115.3:PASS:370,349,0 chr2 179472597 . A G 516 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:232:81:27:44,37:20,21:24,16:-23.5:PASS:267,0,347 chr2 179517230 . C T 170 PASS SNVHPOL=4;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:81:58:34:40,17:15,9:25,8:-9.9:PASS:116,0,368 chr2 179528038 . A C 942 PASS SNVHPOL=2;MQ=42;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:5:0,26:0,26:0,0:0:PASS:341,78,0 chr2 179554305 . C T 658 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:340:310:92:11:46,46:12,12:34,34:-25:PASS:345,0,340 chr2 179558366 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:5:0,82:0,42:0,40:-115.4:PASS:370,247,0 chr2 179560847 . C T 1486 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:436:436:212:30:87,125:49,59:38,66:-90.3:PASS:370,0,370 chr2 179569400 . C T 815 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:374:374:113:7:54,59:32,26:22,33:-38.3:PASS:370,0,370 chr2 179569436 . A G 782 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:312:312:106:9:47,59:28,26:19,33:-42.2:PASS:370,0,309 chr2 179574384 . C T 629 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:287:78:6:37,41:24,23:13,18:-36.6:PASS:332,0,285 chr2 179578730 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:305:305:116:13:1,115:0,68:1,47:-126.2:PASS:370,308,0 chr2 179579093 . T C 1988 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:290:257:76:4:39,37:18,17:21,20:-31.8:PASS:292,0,306 chr2 179579212 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:3:0,85:0,46:0,39:-111.6:PASS:370,256,0 chr2 179579822 . T A 2690 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:12:0,57:0,34:0,23:-70.8:PASS:370,172,0 chr2 179579935 . C T 545 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:272:245:69:6:34,35:17,9:17,26:-16:PASS:280,0,270 chr2 179582063 . A T 468 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:260:74:9:34,40:15,19:19,21:-37.3:PASS:332,0,257 chr2 179582327 . C T 1429 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:192:72:15:42,30:25,12:17,18:-17.5:PASS:226,0,358 chr2 179582537 . G T 2971 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:243:243:94:10:1,93:1,48:0,45:-127.7:PASS:370,246,0 chr2 179583496 . T G 1518 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:242:209:66:5:35,31:24,15:11,16:-21.7:PASS:244,0,298 chr2 179585266 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:12:0,75:0,41:0,34:-100.4:PASS:370,226,0 chr2 179587130 . C G 2138 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:302:269:83:16:43,40:24,24:19,16:-28.4:PASS:304,0,335 chr2 179588996 . C T 430 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:83:6:50,33:31,17:19,16:-22.9:PASS:223,0,370 chr2 179593449 . T C 651 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:279:246:96:17:54,42:22,23:32,19:-24.8:PASS:280,0,370 chr2 179597808 . G A 543 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:294:261:95:14:53,42:27,23:26,19:-30.3:PASS:295,0,370 chr2 179598228 . A G 1950 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:294:261:106:18:60,46:26,14:34,32:-18.9:PASS:296,0,370 chr2 179600563 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:259:259:87:13:0,87:0,58:0,29:-87.4:PASS:370,262,0 chr2 179600648 . C T 694 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:359:326:114:14:61,53:36,36:25,17:-27.1:PASS:361,0,370 chr2 179605180 . C T 2089 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:278:278:85:17:39,46:21,23:18,23:-40.8:PASS:367,0,275 chr2 179605687 . T C 510 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:207:99:7:60,39:37,21:23,18:-26.2:PASS:242,0,370 chr2 179606538 . G A 671 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:293:260:94:15:52,42:20,15:32,27:-26.1:PASS:295,0,370 chr2 179613672 . A G 906 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:541:508:180:18:92,88:41,42:51,46:-61.4:PASS:370,0,370 chr2 179614952 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:397:397:133:18:0,133:0,69:0,64:-179.8:PASS:370,370,0 chr2 179615060 . C T 905 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:493:460:177:13:95,82:52,42:43,40:-57:PASS:370,0,370 chr2 179615386 . G C 959 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:442:442:152:12:71,81:32,42:39,39:-60.6:PASS:370,0,370 chr2 179615887 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:432:399:141:9:74,67:40,36:34,31:-47.4:PASS:370,0,370 chr2 179615931 . C G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:376:376:126:12:0,126:0,67:0,59:-167.1:PASS:370,370,0 chr2 179615994 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:438:438:148:25:0,147:0,97:0,50:-140.1:PASS:370,370,0 chr2 179620951 . C T 2620 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:1:0,60:0,51:0,9:-34.3:PASS:370,181,0 chr2 179621477 . C T 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:11:0,72:0,17:0,55:-56.8:PASS:370,217,0 chr2 179623758 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:5:0,70:0,52:0,18:-59.5:PASS:370,211,0 chr2 179629363 . T C 2052 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:7:0,37:0,18:0,19:-58.6:PASS:370,111,0 chr2 179629461 . C T 2001 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:8:0,36:0,22:0,14:-47.6:PASS:370,108,0 chr2 179634961 . C A 921 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:279:246:83:17:45,38:22,14:23,24:-23.6:PASS:281,0,364 chr2 179644035 . G A 2620 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:316:283:88:8:45,42:28,16:17,26:-23.6:PASS:318,0,335 chr2 179644855 . T C 2360 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:283:265:73:6:36,37:17,14:19,23:-25.8:PASS:299,0,280 chr2 179650701 . C T 1155 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:213:181:46:12:23,23:10,12:13,11:-22.6:PASS:216,0,218 chr2 179698945 . G A 601 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:275:242:78:6:41,37:31,24:10,13:-27.9:PASS:277,0,324 chr2 179702268 . A G 2697 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:12:0,49:0,20:0,29:-62.9:PASS:370,147,0 chr2 179914640 . G A 781 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:33:5:20,13:9,6:11,7:-16.3:PASS:147,0,226 chr2 179979930 . T C 1168 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:250:230:62:5:31,31:14,10:17,21:-20.4:PASS:265,0,247 chr2 180047908 . T C 2348 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:5:0,44:0,23:0,21:-66:PASS:370,132,0 chr2 180311444 . T C 414 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:278:245:88:6:49,39:22,20:27,19:-29.9:PASS:280,0,370 chr2 180810202 . C T 1401 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:505:505:173:16:82,91:55,55:27,36:-61.9:PASS:370,0,370 chr2 180810264 . A T 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:587:587:196:21:0,196:0,108:0,88:-243.7:PASS:370,370,0 chr2 180835792 . T A 664 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:55:5:30,25:9,5:21,20:-14.8:PASS:216,0,271 chr2 182374534 . A G 818 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:48:3:31,17:4,2:27,15:-11.2:PASS:138,0,306 chr2 182395345 . G A 1421 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:187:181:40:6:19,21:7,7:12,14:-19.3:PASS:217,0,184 chr2 182399097 . T C 1426 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:192:50:5:25,25:10,9:15,16:-20.7:PASS:226,0,221 chr2 182399638 . A G 2466 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:3:0,53:0,27:0,26:-79.2:PASS:370,160,0 chr2 182403851 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:282:282:107:12:1,106:1,63:0,43:-119.7:PASS:370,285,0 chr2 182521578 . G A 606 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:10:0,17:0,13:0,4:-21.7:PASS:286,51,0 chr2 182543455 . T C 3024 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:12:0,85:0,31:0,54:-92.2:PASS:370,256,0 chr2 182780126 . G A 565 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:300:267:94:6:51,43:27,26:24,17:-26.9:PASS:302,0,370 chr2 183703336 . G A 1145 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:248:67:9:33,34:7,8:26,26:-21.1:PASS:283,0,256 chr2 183799558 . G C 932 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:208:207:49:5:22,27:7,17:15,10:-20.7:PASS:261,0,205 chr2 183817957 . T A 705 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:221:71:12:38,33:18,14:20,19:-25.1:PASS:256,0,321 chr2 185800905 . A T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:328:328:110:22:0,110:0,50:0,60:-142.8:PASS:370,331,0 chr2 185801747 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:409:409:137:6:0,137:0,63:0,74:-177.9:PASS:370,370,0 chr2 185801755 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:388:388:130:12:0,130:0,59:0,71:-164.7:PASS:370,370,0 chr2 185802211 . C CACA 3070 PASS CIGAR=1M3I;RU=ACA;REFREP=1;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:354:354:149:3,137:0,55:3,82:PASS:999,357,0 chr2 185802243 . C A 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:367:367:123:10:0,123:0,50:0,73:-143:PASS:370,370,0 chr2 185802363 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:16:0,79:0,32:0,47:-93.9:PASS:370,238,0 chr2 186625770 . A G 1070 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:49:10:33,16:17,7:16,9:-13.7:PASS:133,0,327 chr2 186627943 . T C 1563 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:80:7:47,33:34,22:13,11:-22.5:PASS:228,0,370 chr2 186654592 . A G 1655 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:231:198:83:8:49,33:27,15:22,18:-22.5:PASS:233,0,370 chr2 186655726 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:548:548:183:11:0,183:0,78:0,105:-218:PASS:370,370,0 chr2 186656657 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:458:425:152:11:80,72:42,36:38,36:-52.3:PASS:370,0,370 chr2 186656956 . T C 2751 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:428:428:133:19:64,69:32,35:32,34:-53.5:PASS:370,0,370 chr2 186657089 . C A 3062 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:302:302:132:16:53,79:22,36:31,43:-65.6:PASS:370,0,299 chr2 186658056 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:412:412:166:10:72,94:29,39:43,55:-67.7:PASS:370,0,370 chr2 186658438 . C T 2247 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:398:365:119:12:61,58:28,23:33,35:-36.7:PASS:370,0,370 chr2 186658565 . G T 2714 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:343:343:111:7:50,61:21,37:29,24:-37.9:PASS:370,0,340 chr2 186659184 . C A 1252 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:351:318:137:24:79,58:45,33:34,25:-36.7:PASS:352,0,370 chr2 186659359 . G T 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:495:462:158:18:82,76:49,38:33,38:-51.7:PASS:370,0,370 chr2 186661673 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:531:498:167:21:84,82:43,42:41,40:-60.7:PASS:370,0,370 chr2 186664473 . T C 1811 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:262:229:87:5:49,38:40,31:9,7:-17.2:PASS:264,0,370 chr2 186664963 . C A 2856 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:428:422:127:10:62,65:25,29:37,36:-50.3:PASS:370,0,370 chr2 186665432 . G A 1559 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:79:8:47,32:26,14:21,18:-19.1:PASS:218,0,370 chr2 186665824 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:508:489:154:16:76,78:41,43:35,35:-55.3:PASS:370,0,370 chr2 186667121 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:510:498:156:19:77,79:39,50:38,29:-41.8:PASS:370,0,370 chr2 186668935 . A G 1411 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:531:530:169:12:82,87:47,44:35,43:-64.1:PASS:370,0,370 chr2 186670104 . A C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:382:382:128:16:0,128:0,62:0,66:-174.3:PASS:370,370,0 chr2 186670780 . T A 2978 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:453:420:144:6:75,69:40,29:35,40:-40.3:PASS:370,0,370 chr2 186670979 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:379:379:127:19:0,127:0,70:0,57:-162:PASS:370,370,0 chr2 186671357 . G A 2654 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:366:366:119:14:55,64:21,16:34,48:-28:PASS:370,0,363 chr2 186671912 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:456:423:149:9:78,71:37,44:41,27:-34.1:PASS:370,0,370 chr2 186672897 . A G 1336 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:327:327:114:19:50,64:19,24:31,40:-45.5:PASS:370,0,324 chr2 186697876 . A G 2737 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:3:0,48:0,32:0,16:-53.4:PASS:370,144,0 chr2 187532417 . G A 2482 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:5:0,50:0,35:0,15:-50.4:PASS:370,150,0 chr2 187698751 . G A 1167 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:43:5:22,21:9,10:13,11:-23:PASS:201,0,207 chr2 188250301 . T A 2651 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:13:0,62:0,34:0,28:-84.9:PASS:370,187,0 chr2 188343497 . T C 1632 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:8:0,81:0,36:0,45:-106.3:PASS:370,244,0 chr2 189862097 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:788:755:347:39:194,153:98,75:96,78:-87.5:PASS:370,0,370 chr2 189864582 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:485:485:162:21:0,162:0,87:0,75:-208.1:PASS:370,370,0 chr2 189875421 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:7:0,60:0,40:0,20:-63.7:PASS:370,181,0 chr2 189907937 . A G 2937 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:157:157:58:7:0,57:0,33:0,24:-74.3:PASS:370,172,0 chr2 189932831 . T C 2289 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:11:0,45:0,22:0,23:-69.6:PASS:370,135,0 chr2 189974958 . G T 2269 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:10:0,41:0,32:0,9:-34.8:PASS:370,123,0 chr2 190323530 . A G 914 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:5:0,19:0,7:0,12:-27:PASS:302,57,0 chr2 190430177 . A G 2986 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:15:0,74:0,38:0,36:-103.4:PASS:370,223,0 chr2 190531426 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:274:274:92:9:0,92:0,56:0,36:-105.1:PASS:370,277,0 chr2 190595258 . G T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:13:0,78:0,40:0,38:-110.6:PASS:370,235,0 chr2 190602513 . T C 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:11:0,68:0,27:0,41:-80.4:PASS:370,205,0 chr2 190617643 . A G 2758 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:5:0,56:0,24:0,32:-74.2:PASS:370,169,0 chr2 191064753 . C T 541 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:224:68:9:36,32:11,9:25,23:-20.9:PASS:259,0,301 chr2 191161544 . G A 643 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:51:7:29,22:21,15:8,7:-19.3:PASS:194,0,270 chr2 191161622 . T C 1500 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:196:60:10:25,35:9,23:16,12:-23.9:PASS:318,0,193 chr2 191184475 . A G 1289 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:275:242:70:29:36,34:14,11:22,23:-23.6:PASS:276,0,295 chr2 191224981 . G T 1325 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:5:0,38:0,16:0,22:-52:PASS:370,114,0 chr2 191231458 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:10:0,66:0,43:0,23:-71.1:PASS:370,199,0 chr2 191235610 . A G 1679 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:12:0,50:0,35:0,15:-49.9:PASS:370,150,0 chr2 191235901 . A C 2876 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:8:0,45:0,24:0,21:-65.9:PASS:370,135,0 chr2 191301368 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:237:237:92:16:1,91:0,37:1,54:-106.6:PASS:370,240,0 chr2 191379268 . G A 1586 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:9:0,37:0,19:0,18:-58:PASS:370,111,0 chr2 192160839 . A T 1744 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:397:388:116:6:57,59:40,41:17,18:-33.6:PASS:370,0,370 chr2 192160875 . C T 1803 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:379:379:114:9:55,59:36,38:19,21:-38.8:PASS:370,0,370 chr2 192250726 . G A 928 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:5:0,35:0,15:0,20:-51:PASS:370,105,0 chr2 192279327 . T C 1343 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:113:113:52:4:1,51:1,26:0,25:-70.4:PASS:370,116,0 chr2 192701393 . A G 1838 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:4:0,80:0,18:0,62:-57.6:PASS:370,241,0 chr2 192701407 . G C 788 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:248:67:8:33,34:9,9:24,25:-22:PASS:283,0,266 chr2 196673533 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:13:0,69:0,21:0,48:-65.5:PASS:370,208,0 chr2 196681503 . G A 815 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:65:14:35,30:14,18:21,12:-20:PASS:247,0,300 chr2 196791276 . T G 2134 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:307:307:103:8:0,103:0,33:0,70:-97.3:PASS:370,310,0 chr2 196851911 . G A 1542 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:8:0,60:0,18:0,42:-58.3:PASS:370,181,0 chr2 196866420 . C T 2783 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:6:0,46:0,33:0,13:-44.9:PASS:370,138,0 chr2 197004439 . A G 2389 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:334:334:112:8:0,112:0,59:0,53:-149:PASS:370,337,0 chr2 197021276 . T C 1473 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:17:0,85:0,39:0,46:-111.2:PASS:370,256,0 chr2 197021372 . T A 1244 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:6:0,57:0,9:0,48:-34.5:PASS:370,172,0 chr2 197087061 . T C 345 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:107:107:27:4:8,19:5,3:3,16:-12.3:PASS:226,0,104 chr2 197118729 . C T 1463 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:11:0,28:0,10:0,18:-37.8:PASS:370,84,0 chr2 197184321 . C T 1626 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:296:296:93:11:43,50:21,20:22,30:-35.1:PASS:370,0,293 chr2 197521750 . G A 1231 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:213:51:7:24,27:11,14:13,13:-26.7:PASS:252,0,211 chr2 197541296 . G A 247 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:123:40:5:24,16:16,10:8,6:-17.5:PASS:158,0,240 chr2 197662526 . T C 1008 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:169:37:4:17,20:9,13:8,7:-18.3:PASS:204,0,178 chr2 198257795 . T C 1788 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:210:63:10:27,36:16,22:11,14:-31.4:PASS:322,0,207 chr2 198265526 . A G 2303 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:202:64:14:26,38:18,21:8,17:-38.9:PASS:342,0,199 chr2 198283305 . T C 2067 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:267:240:65:7:32,33:22,22:10,11:-24.5:PASS:274,0,265 chr2 198327314 . G A 838 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:291:258:77:11:39,38:24,28:15,10:-19.2:PASS:293,0,303 chr2 198362018 . T C 3070 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:752:719:297:36:161,136:91,66:70,70:-74.6:PASS:370,0,370 chr2 198363504 . A G 2385 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:625:592:255:40:139,116:78,69:61,47:-57.1:PASS:370,0,370 chr2 198508951 . G A 1683 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:227:68:9:35,33:23,18:12,15:-29.2:PASS:262,0,290 chr2 198950029 . A G 946 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:298:89:9:45,44:22,16:23,28:-26.8:PASS:333,0,345 chr2 200776353 . T G 520 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:18:18:7:0:0,7:0,6:0,1:-8.5:PASS:153,21,0 chr2 201354935 . C G 457 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:143:25:4:11,14:7,5:4,9:-16.4:PASS:186,0,140 chr2 201437328 . C A 2810 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:388:355:164:10:95,69:46,41:49,28:-30.7:PASS:370,0,370 chr2 201437334 . T C 2548 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:352:319:156:18:91,65:42,39:49,26:-26:PASS:354,0,370 chr2 201438086 . C T 1116 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:406:373:128:19:67,61:30,27:37,34:-42:PASS:370,0,370 chr2 201438497 . A G 1637 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:508:508:176:19:82,94:51,50:31,44:-71.9:PASS:370,0,370 chr2 201492162 . A G 508 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:170:39:1:20,19:9,4:11,15:-13.3:PASS:204,0,201 chr2 201505835 . C T 336 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:107:21:7:10,11:8,5:2,6:-14.5:PASS:142,0,143 chr2 202122995 . A G 1870 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:6:0,33:0,26:0,7:-28.7:PASS:370,99,0 chr2 202149696 . G A 801 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:167:55:6:21,34:15,21:6,13:-31:PASS:316,0,164 chr2 202215492 . C G 2183 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:4:0,48:0,17:0,31:-55.1:PASS:370,144,0 chr2 202260049 . G A 2166 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:7:0,49:0,31:0,18:-56.9:PASS:370,147,0 chr2 202264156 . C T 2096 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:0:0,55:0,34:0,21:-67.4:PASS:370,166,0 chr2 202337730 . A G 1990 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:12:0,42:0,27:0,15:-47.4:PASS:370,126,0 chr2 202342402 . G T 1467 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:10:0,34:0,19:0,15:-50.7:PASS:370,102,0 chr2 202357196 . A G 1041 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:308:275:121:13:70,51:31,23:39,28:-33.8:PASS:309,0,370 chr2 202357949 . A C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:384:384:142:19:1,141:1,72:0,69:-183.6:PASS:370,370,0 chr2 202410300 . A T 293 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:109:19:12:9,10:5,3:4,7:-11.4:PASS:144,0,143 chr2 202469361 . C T 2126 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:7:0,49:0,28:0,21:-66.8:PASS:370,147,0 chr2 202557702 . C T 1183 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:4:0,25:0,12:0,13:-42.5:PASS:370,75,0 chr2 202575821 . G A 1815 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:3:0,49:0,14:0,35:-47.2:PASS:370,147,0 chr2 202598113 . C T 3021 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:274:274:92:4:0,92:0,29:0,63:-87.2:PASS:370,277,0 chr2 202625615 . C T 2937 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:9:0,72:0,48:0,24:-73.5:PASS:370,217,0 chr2 202939654 . T C 735 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:56:5:34,22:22,14:12,8:-18.2:PASS:181,0,316 chr2 202964380 . G A 571 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:144:30:2:15,15:5,9:10,6:-16.6:PASS:178,0,166 chr2 203417525 . G A 464 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:155:30:6:13,17:7,8:6,9:-21.5:PASS:199,0,152 chr2 204062061 . A G 2946 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:10:0,61:0,30:0,31:-87.9:PASS:370,184,0 chr2 204116690 . C T 2700 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:54:6:0,54:0,45:0,9:-34.6:PASS:370,163,0 chr2 204154552 . C T 1444 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:3:0,18:0,5:0,13:-25:PASS:310,54,0 chr2 204322298 . T C 1717 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:4:0,35:0,18:0,17:-56.6:PASS:370,105,0 chr2 205829991 . C T 2754 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:6:0,62:0,24:0,38:-73.1:PASS:370,187,0 chr2 205912403 . T C 686 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:208:50:4:23,27:5,10:18,17:-25.6:PASS:246,0,207 chr2 205969220 . G A 1997 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:489:456:155:16:80,75:26,22:54,53:-35.7:PASS:370,0,370 chr2 205990353 . C T 374 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:84:36:3:24,12:16,9:8,3:-10.3:PASS:119,0,259 chr2 206364737 . T C 264 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:26:6:14,12:4,2:10,10:-9.7:PASS:148,0,183 chr2 206581033 . G A 1274 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:11:0,23:0,8:0,15:-31.1:PASS:347,69,0 chr2 206608039 . T C 2489 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:11:0,42:0,29:0,13:-44.9:PASS:370,126,0 chr2 207006676 . T C 1511 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:6:0,68:0,51:0,17:-56:PASS:370,205,0 chr2 207008763 . C A 1458 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:13:0,66:0,44:0,22:-68.3:PASS:370,199,0 chr2 207041053 . T C 1126 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:11:0,42:0,20:0,22:-61.9:PASS:370,126,0 chr2 207041441 . G A 1694 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:201:201:89:12:2,87:2,30:0,57:-74.4:PASS:370,204,0 chr2 207527840 . G T 1885 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:264:231:80:12:44,36:18,18:26,18:-28.4:PASS:266,0,345 chr2 207569623 . A C 615 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:182:58:6:32,26:14,8:18,18:-16.1:PASS:217,0,284 chr2 207603234 . T G 392 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:81:19:1:12,7:6,5:6,2:-9.8:PASS:116,0,181 chr2 207621759 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:7:0,69:0,27:0,42:-81.5:PASS:370,208,0 chr2 207820276 . G A 2069 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:55:4:29,26:5,7:24,19:-21.6:PASS:225,0,251 chr2 207824384 . T G 1405 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:36:2:18,18:12,14:6,4:-14.1:PASS:188,0,195 chr2 207825656 . A T 1956 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:247:247:66:5:31,35:15,13:16,22:-25.9:PASS:300,0,244 chr2 207834092 . A T 331 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:35:10:18,17:6,4:12,13:-15.1:PASS:181,0,198 chr2 207988613 . C T 2629 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:12:0,45:0,27:0,18:-57.1:PASS:370,135,0 chr2 207998800 . C T 507 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:17:4:10,7:4,3:6,4:-12.7:PASS:122,0,152 chr2 208477852 . G A 2177 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:222:189:67:13:38,29:29,16:9,13:-22.4:PASS:224,0,331 chr2 208477956 . C T 2639 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:298:96:12:50,46:30,31:20,15:-26.7:PASS:332,0,370 chr2 208633413 . T C 1164 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:2:0,19:0,1:0,18:-7.3:PASS:290,57,0 chr2 208811097 . C T 2476 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:4:0,50:0,31:0,19:-58.7:PASS:370,150,0 chr2 208841964 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:22:0,79:0,41:0,38:-109.4:PASS:370,238,0 chr2 208986637 . T C 988 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:9:0,44:0,10:0,34:-36:PASS:370,132,0 chr2 208989037 . A G 740 PASS SNVHPOL=2;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:8:0,31:0,14:0,17:-46.7:PASS:370,93,0 chr2 209007559 . T G 2524 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:3:0,60:0,10:0,50:-36.9:PASS:370,181,0 chr2 209010558 . A G 2063 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:7:0,39:0,25:0,14:-47.9:PASS:370,117,0 chr2 209036712 . T C 1571 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:10:0,21:0,15:0,6:-25.9:PASS:330,63,0 chr2 209036778 . A G 1778 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:82:82:33:6:0,32:0,21:0,11:-38:PASS:370,96,0 chr2 209108317 . C T 661 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:250:217:59:9:30,29:14,7:16,22:-14.9:PASS:252,0,258 chr2 209113192 . G A 890 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:223:77:7:32,45:22,30:10,15:-32.6:PASS:370,0,220 chr2 209184980 . G A 2044 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:4:0,46:0,32:0,14:-45.2:PASS:370,138,0 chr2 209184999 . C T 1050 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:113:113:49:2:1,48:1,31:0,17:-53.7:PASS:370,116,0 chr2 209190330 . T C 1432 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:13:0,62:0,31:0,31:-91.6:PASS:370,187,0 chr2 209190519 . A T 1639 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:8:0,74:0,47:0,27:-81.8:PASS:370,223,0 chr2 209190528 . C G 1689 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:9:0,74:0,45:0,29:-87:PASS:370,223,0 chr2 209190632 . T G 662 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:298:265:88:14:44,44:21,29:23,15:-19.7:PASS:299,0,328 chr2 209190649 . A G 810 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:340:307:102:9:52,50:26,31:26,19:-27:PASS:342,0,370 chr2 209191082 . C A 1055 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:19:0,52:0,22:0,30:-66.9:PASS:370,157,0 chr2 209191099 . T C 2314 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:20:0,53:0,21:0,32:-62.7:PASS:370,160,0 chr2 209212707 . G A 319 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:51:4:30,21:6,7:24,14:-19.8:PASS:178,0,260 chr2 209214770 . A G 823 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:5:0,33:0,14:0,19:-48.5:PASS:370,99,0 chr2 209215586 . A G 1157 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:12:0,55:0,36:0,19:-61:PASS:370,166,0 chr2 209358027 . C T 1555 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:17:0,36:0,31:0,5:-23:PASS:370,108,0 chr2 211060050 . T G 729 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:192:54:6:22,32:7,12:15,20:-29.2:PASS:302,0,189 chr2 211456637 . A G 1548 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:236:203:60:4:32,28:15,14:17,14:-25.8:PASS:237,0,275:211456637 chr2 211456639 . C T 1415 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:199:166:49:12:27,22:14,11:13,11:-22.9:PASS:201,0,256:211456637 chr2 211476897 . C T 398 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:59:9:31,28:23,17:8,11:-25.9:PASS:235,0,272 chr2 211481257 . C G 1107 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:39:6:23,16:9,7:14,9:-17.1:PASS:159,0,231 chr2 212251864 . T C 291 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:36:2:19,17:3,3:16,14:-15.2:PASS:183,0,194 chr2 214012508 . C T 1433 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:67:6:39,28:21,8:18,20:-11.9:PASS:203,0,338 chr2 215632255 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:4:0,63:0,37:0,26:-79.1:PASS:370,190,0 chr2 215632256 . A G 2945 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:9:0,59:0,35:0,24:-73.5:PASS:370,178,0 chr2 215645464 . C G 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:12:0,89:0,46:0,43:-125.3:PASS:370,268,0 chr2 215820013 . G A 2892 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:9:0,60:0,29:0,31:-87.9:PASS:370,181,0 chr2 215876166 . A T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:1:0,70:0,48:0,22:-69.1:PASS:370,211,0 chr2 216235089 . C T 1537 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:8:0,34:0,15:0,19:-49.8:PASS:370,102,0 chr2 216242917 . T A 730 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:3:0,23:0,15:0,8:-31.2:PASS:352,69,0 chr2 216249587 . C T 1125 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:5:0,45:0,34:0,11:-38.9:PASS:370,135,0 chr2 216272900 . T G 1174 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:2:0,16:0,12:0,4:-22:PASS:281,48,0 chr2 216272907 . A T 501 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:4:0,14:0,10:0,4:-21.7:PASS:260,42,0 chr2 216300482 . T A 2076 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:10:0,54:0,16:0,38:-52.5:PASS:370,163,0 chr2 216878008 . C G 614 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:52:52:21:13:6,15:0,3:6,12:-15.5:PASS:191,0,49 chr2 216964944 . C T 378 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:163:68:9:41,27:19,11:22,16:-19.2:PASS:198,0,353 chr2 217012901 . A G 2113 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:4:0,50:0,27:0,23:-72.7:PASS:370,150,0 chr2 217285104 . C G 867 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:11:0,34:0,19:0,15:-49.2:PASS:370,102,0 chr2 217541582 . T C 1337 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:10:0,23:0,9:0,14:-35:PASS:361,69,0 chr2 218669225 . T C 335 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:139:42:15:16,26:8,16:8,10:-24.5:PASS:259,0,136 chr2 218674697 . C T 1736 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:11:0,33:0,8:0,25:-30.7:PASS:370,99,0 chr2 218682474 . A G 1458 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:158:52:26:29,23:16,16:13,7:-14.1:PASS:193,0,268 chr2 218682771 . A G 1452 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:177:58:21:22,36:9,24:13,12:-25.2:PASS:328,0,174 chr2 218683154 . A G 1902 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:8:0,41:0,22:0,19:-60.4:PASS:370,123,0 chr2 218683257 . A G 965 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:142:36:9:19,17:5,6:14,11:-18.5:PASS:177,0,196 chr2 218683368 . C T 260 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:23:10:13,10:7,7:6,3:-12.8:PASS:140,0,170 chr2 218937527 . G A 339 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:122:20:6:9,11:6,5:3,6:-16.1:PASS:157,0,133 chr2 218940259 . C T 538 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:177:38:14:18,20:6,12:12,8:-18.4:PASS:212,0,191 chr2 218940418 . C T 347 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:174:40:8:18,22:9,11:9,11:-25.8:PASS:227,0,171 chr2 219000310 . C T 2164 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:14:0,30:0,18:0,12:-43.4:PASS:370,90,0 chr2 219000460 . C T 338 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:142:37:7:20,17:10,5:10,12:-13.2:PASS:177,0,211 chr2 219029108 . C G 464 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:192:48:12:22,26:17,11:5,15:-20.8:PASS:246,0,189 chr2 219140288 . G C 1106 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:144:41:10:23,18:11,7:12,11:-16.2:PASS:179,0,232 chr2 219144815 . T C 1877 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:5:0,31:0,19:0,12:-43.4:PASS:370,93,0 chr2 219146803 . G A 139 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:16:3:9,7:5,5:4,2:-11.2:PASS:122,0,136 chr2 219221846 . G A 495 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:101:15:8:8,7:6,4:2,3:-15.3:PASS:136,0,134 chr2 219227599 . G A 309 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:27:21:7:14,7:4,0:10,7:2.8:PASS:61,0,196 chr2 219231807 . C T 1684 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:13:0,37:0,19:0,18:-57.4:PASS:370,111,0 chr2 219249013 . C T 2120 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:59:27:33,26:10,7:23,19:-18.3:PASS:216,0,285 chr2 219252630 . C T 197 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:30:5:18,12:11,6:7,6:-14:PASS:134,0,203 chr2 219254622 . A G 1410 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:8:0,24:0,13:0,11:-39.3:PASS:366,72,0 chr2 219266423 . C A 398 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:97:19:8:10,9:4,2:6,7:-10.6:PASS:132,0,144 chr2 219267781 . C T 401 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:87:87:24:5:6,18:2,11:4,7:-21:PASS:227,0,84 chr2 219319657 . A G 2904 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:2:0,68:0,34:0,34:-99.3:PASS:370,205,0 chr2 219492924 . T C 981 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:157:33:5:15,18:8,7:7,11:-19.1:PASS:202,0,155 chr2 219508372 . A T 387 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:242:61:24:29,32:6,9:23,23:-25.1:PASS:279,0,242 chr2 219508988 . T C 1530 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:74:9:43,31:18,12:25,19:-20.2:PASS:224,0,359 chr2 219509618 . C A 1240 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:84:50:19:34,16:17,7:17,9:-13.5:PASS:119,0,326 chr2 219555262 . G A 269 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:79:26:8:17,9:5,2:12,7:-9.4:PASS:114,0,215 chr2 219562675 . G A 371 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:202:50:12:24,26:11,9:13,17:-20.2:PASS:237,0,212 chr2 219602499 . G C 386 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:240:62:5:30,32:22,22:8,10:-25.1:PASS:276,0,248 chr2 219602819 . G A 337 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:197:62:6:33,29:10,13:23,16:-26.1:PASS:232,0,283 chr2 219610433 . A G 432 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:145:39:7:15,24:9,12:6,12:-28:PASS:250,0,142 chr2 219903258 . T G 1043 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:172:43:12:22,21:7,10:15,11:-22.4:PASS:207,0,213 chr2 219903723 . C T 1221 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:163:60:9:35,25:16,9:19,16:-16.6:PASS:198,0,309 chr2 219920037 . A G 1495 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:8:0,26:0,16:0,10:-37.4:PASS:370,78,0 chr2 219920412 . A G 854 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:112:32:12:19,13:6,8:13,5:-12.5:PASS:147,0,217 chr2 220037393 . A G 1432 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:8:0,30:0,17:0,13:-43.3:PASS:370,90,0 chr2 220037557 . G A 287 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:91:24:14:13,11:13,10:0,1:-8.7:PASS:125,0,122 chr2 220037666 . A G 1822 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:9:0,35:0,15:0,20:-50.7:PASS:370,105,0 chr2 220037756 . A G 2251 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:8:0,42:0,15:0,27:-51.1:PASS:370,126,0 chr2 220040330 . A G 1308 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:7:0,28:0,16:0,12:-43.4:PASS:370,84,0 chr2 220046975 . C A 1500 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:18:0,31:0,5:0,26:-23.7:PASS:370,93,0 chr2 220083279 . C T 1404 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:12:0,23:0,12:0,11:-39.8:PASS:360,69,0 chr2 220085845 . A G 1522 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:6:0,24:0,11:0,13:-40.3:PASS:370,72,0 chr2 220111389 . T C 260 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:58:9:37,21:16,11:21,10:-16.7:PASS:161,0,337 chr2 220113242 . T G 1452 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:6:0,33:0,7:0,26:-28.2:PASS:370,99,0 chr2 220250147 . A G 1709 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:3:0,33:0,22:0,11:-36.8:PASS:370,99,0 chr2 220283259 . A G 809 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:12:0,23:0,12:0,11:-40.5:PASS:352,69,0 chr2 220283277 . T C 710 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:10:0,20:0,9:0,11:-35.3:PASS:325,60,0 chr2 220315970 . G A 264 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:178:145:31:14:16,15:9,8:7,7:-20.6:PASS:180,0,194 chr2 220333950 . T C 1994 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:10:0,45:0,30:0,15:-49.5:PASS:370,135,0 chr2 220353532 . C A 345 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:29:7:16,13:7,4:9,9:-13.1:PASS:153,0,192 chr2 220362899 . C G 1300 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:7:0,22:0,6:0,16:-26.5:PASS:342,66,0 chr2 220379560 . C G 728 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:15:0,33:0,17:0,16:-52.7:PASS:370,99,0 chr2 220399951 . A G 1779 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:17:0,28:0,13:0,15:-43.8:PASS:370,84,0 chr2 220404381 . A G 2811 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:9:0,53:0,33:0,20:-62.3:PASS:370,159,0 chr2 220404726 . G A 1117 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:14:0,40:0,19:0,21:-60.5:PASS:370,120,0 chr2 220405230 . G A 1172 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:23:0,39:0,24:0,15:-49.8:PASS:370,117,0 chr2 220405321 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:238:238:80:18:0,80:0,42:0,38:-110.5:PASS:370,241,0 chr2 220406722 . T C 1908 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:11:0,35:0,14:0,21:-48.7:PASS:370,105,0 chr2 220412256 . T C 1742 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:12:0,35:0,17:0,18:-54.5:PASS:370,105,0 chr2 220414016 . C T 1778 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:13:0,43:0,12:0,31:-42.6:PASS:370,129,0 chr2 220414019 . T C 2077 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:8:0,49:0,13:0,36:-45.4:PASS:370,147,0 chr2 220419236 . T C 1856 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:6:0,36:0,26:0,10:-35.8:PASS:370,108,0 chr2 220419339 . T C 2041 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:14:0,37:0,21:0,16:-53.3:PASS:370,111,0 chr2 220420956 . A G 2014 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:13:0,36:0,14:0,22:-48.4:PASS:370,108,0 chr2 220421417 . C G 988 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:6:0,39:0,7:0,32:-30.1:PASS:370,117,0 chr2 220422774 . A G 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:26:0,70:0,42:0,28:-83.4:PASS:370,211,0 chr2 220430203 . C T 1875 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:8:0,35:0,9:0,26:-33.6:PASS:370,105,0 chr2 220435034 . A G 1427 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:11:0,21:0,10:0,11:-36.9:PASS:332,63,0 chr2 220435375 . G A 374 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:4:0,9:0,6:0,3:-19.4:PASS:204,27,0 chr2 220462640 . G T 1575 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:13:0,23:0,16:0,7:-28.7:PASS:356,69,0 chr2 220476443 . C T 2607 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:22:0,45:0,30:0,15:-50.5:PASS:370,135,0 chr2 220494118 . A C 1582 PASS SNVHPOL=9;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:13:0,31:0,11:0,20:-38.5:PASS:370,93,0 chr2 220500423 . A G 2074 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:8:0,35:0,19:0,16:-53:PASS:370,105,0 chr2 220500426 . A G 2055 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:6:0,38:0,21:0,17:-56.2:PASS:370,114,0 chr2 220502367 . A C 1720 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:14:0,33:0,21:0,12:-42.4:PASS:370,99,0 chr2 220505265 . T C 1916 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:12:0,39:0,23:0,16:-53.2:PASS:370,117,0 chr2 222290829 . C T 387 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:237:231:57:11:27,30:18,23:9,7:-18.4:PASS:266,0,234 chr2 223161889 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:448:448:150:47:0,150:0,60:0,90:-168.4:PASS:370,370,0 chr2 223423362 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:298:298:100:23:0,100:0,51:0,49:-137.9:PASS:370,301,0 chr2 223436607 . C T 912 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:11:0,36:0,20:0,16:-51.6:PASS:370,108,0 chr2 223783841 . G A 300 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:153:30:4:13,17:8,10:5,7:-22:PASS:200,0,151 chr2 223917629 . C T 1765 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:58:10:30,28:16,12:14,16:-21:PASS:223,0,261 chr2 223917812 . T C 2355 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:13:0,48:0,15:0,33:-48.3:PASS:370,144,0 chr2 223917983 . T G 1497 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:172:37:21:17,20:9,6:8,14:-16.8:PASS:213,0,170 chr2 224824617 . A G 540 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:328:295:101:10:53,48:17,21:36,27:-35.7:PASS:330,0,370 chr2 225346646 . T C 885 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:236:76:3:41,35:27,20:14,15:-30.8:PASS:271,0,339 chr2 225362478 . C T 404 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:138:28:3:14,14:7,5:7,9:-16.6:PASS:173,0,173 chr2 225434445 . A G 372 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:59:5:37,22:24,14:13,8:-17.7:PASS:170,0,340 chr2 226273689 . T C 1571 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:202:63:10:34,29:13,16:21,13:-21:PASS:237,0,295 chr2 226491770 . A C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:18:0,76:0,37:0,39:-109.1:PASS:370,229,0 chr2 227985859 . T C 355 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:86:20:4:10,10:1,1:9,9:-5.9:PASS:120,0,123 chr2 228102723 . G C 2029 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:10:0,47:0,22:0,25:-67.1:PASS:370,141,0 chr2 228111435 . T C 814 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:41:4:21,20:10,9:11,11:-20.7:PASS:200,0,204 chr2 228113175 . A G 713 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:33:4:18,15:12,13:6,2:-9.8:PASS:165,0,207 chr2 228128540 . C T 525 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:194:62:11:33,29:23,22:10,7:-16.2:PASS:229,0,284 chr2 228135631 . C T 2180 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:196:196:66:10:0,66:0,14:0,52:-47.4:PASS:370,199,0 chr2 228194480 . A T 1877 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:184:184:62:5:0,62:0,27:0,35:-83.2:PASS:370,187,0:. chr2 228194481 . G T 1797 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:172:172:58:10:0,58:0,25:0,33:-76.4:PASS:370,175,0:. chr2 228398422 . A G 662 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:201:72:7:41,31:12,12:29,19:-27.1:PASS:236,0,344 chr2 228476140 . C T 1158 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:42:9:22,20:16,16:6,4:-12.7:PASS:192,0,218 chr2 228476253 . C G 2629 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:17:0,45:0,26:0,19:-58.9:PASS:370,135,0 chr2 228883029 . A C 959 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:309:309:100:10:46,54:20,23:26,31:-41:PASS:370,0,306 chr2 228883721 . T C 598 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:196:72:12:41,31:18,14:23,17:-25.9:PASS:231,0,347 chr2 230668858 . T C 1318 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:65:7:42,23:18,13:24,10:-13:PASS:156,0,370 chr2 231050715 . A G 2846 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:11:0,45:0,28:0,17:-56.1:PASS:370,135,0 chr2 231072709 . C T 667 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:148:30:0:14,16:8,3:6,13:-9.5:PASS:183,0,167 chr2 231077725 . A G 2501 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:10:0,38:0,7:0,31:-30.3:PASS:370,114,0 chr2 231149108 . G A 2763 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:7:0,59:0,24:0,35:-74:PASS:370,178,0 chr2 231248261 . C T 1132 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:197:50:5:21,29:14,22:7,7:-20.2:PASS:279,0,194 chr2 231258150 . C T 1082 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:65:2:38,27:21,16:17,11:-19.6:PASS:197,0,337 chr2 231331896 . G A 2615 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:256:256:86:16:0,86:0,44:0,42:-122:PASS:370,259,0 chr2 231333763 . A G 469 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:25:2:13,12:8,8:5,4:-16:PASS:162,0,170 chr2 231406070 . G A 467 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:151:118:39:3:24,15:12,8:12,7:-17.2:PASS:153,0,257 chr2 231406680 . T C 2454 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:51:13:1,50:1,24:0,26:-66.1:PASS:370,117,0 chr2 231738168 . G A 1441 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:18:0,36:0,19:0,17:-53.8:PASS:370,108,0 chr2 231738263 . C T 2081 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:16:0,38:0,10:0,28:-35.3:PASS:370,114,0 chr2 232072912 . T C 1574 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:271:271:76:8:35,41:21,20:14,21:-33:PASS:329,0,268 chr2 232087474 . A G 1669 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:1:0,35:0,22:0,13:-44.8:PASS:370,105,0 chr2 232087475 . T A 1698 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:2:0,34:0,21:0,13:-46:PASS:370,102,0 chr2 232225535 . C CG 3070 PASS CIGAR=1M1I;RU=G;REFREP=3;IDREP=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:108:108:67:4,57:1,24:3,33:PASS:999,111,0 chr2 232326417 . C T 2409 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:20:0,76:0,42:0,34:-100:PASS:370,229,0 chr2 232458443 . T C 2400 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:12:0,41:0,12:0,29:-41.8:PASS:370,123,0 chr2 232952286 . A G 722 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:291:290:82:14:39,43:27,25:12,18:-38.2:PASS:337,0,288 chr2 233243981 . A T 614 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:182:42:16:20,22:10,9:10,13:-21:PASS:217,0,192 chr2 233244586 . C G 2396 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:9:0,55:0,20:0,35:-62.7:PASS:370,166,0 chr2 233245141 . T C 687 PASS SNVHPOL=2;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:168:44:15:22,22:7,3:15,19:-10:PASS:203,0,208 chr2 233273107 . A G 169 PASS SNVHPOL=4;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:75:42:24:14:18,6:9,3:9,3:-7.6:PASS:77,0,221 chr2 233274145 . G C 725 PASS SNVHPOL=2;MQ=48;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:6:0,14:0,13:0,1:-8.2:PASS:228,42,0 chr2 233349588 . G A 933 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:140:36:6:20,16:10,7:10,9:-18.6:PASS:174,0,215 chr2 233413031 . T C 113 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:25:6:2:4,2:0,1:4,1:-5:PASS:59,0,67 chr2 233659553 . C A 635 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:238:74:17:32,42:16,21:16,21:-39.3:PASS:344,0,235 chr2 233712226 . CACA C,CGCAACA 3070 PASS CIGAR=1M3D,1M3I3M;RU=ACA,GCA;REFREP=1,0;IDREP=0,1;MQ=60;AC=1,1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/2:420:420:85:3,41,33:2,13,8:1,28,25:PASS:999,554,457,693,0,614 chr2 233712227 . A G 1196 PASS SNVHPOL=4;MQ=60;AC=1;AN=1 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1:461:420:32:5:0,32:0,8:0,24:-32.8:PASS:370,0 chr2 233712248 . G A 353 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:63:14:36,27:7,1:29,26:-3.8:PASS:186,0,311 chr2 233750074 . C T 343 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:39:8:28,11:12,6:16,5:-9.1:PASS:103,0,298 chr2 233757679 . G A 458 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:117:33:13:13,20:7,12:6,8:-19.2:PASS:201,0,114 chr2 233757697 . A G 1913 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:16:0,30:0,17:0,13:-43.7:PASS:370,90,0 chr2 233785015 . G A 517 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:23:9:14,9:7,6:7,3:-12.5:PASS:134,0,180 chr2 233834975 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:10:0,56:0,28:0,28:-83.3:PASS:370,169,0 chr2 233899126 . C A 388 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:137:40:16:22,18:12,7:10,11:-15.7:PASS:172,0,221 chr2 234066969 . C G 1146 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:1:0,38:0,20:0,18:-58.8:PASS:370,114,0 chr2 234067017 . A G 428 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:39:4:23,16:11,7:12,9:-16.3:PASS:160,0,235 chr2 234113057 . G A 221 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:90:34:14:23,11:13,6:10,5:-14.3:PASS:124,0,247 chr2 234183368 . A G 881 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:29:5:15,14:10,7:5,7:-17.8:PASS:164,0,183 chr2 234255547 . G A 705 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:295:265:74:8:37,37:17,15:20,22:-29:PASS:299,0,295:. chr2 234356795 . G A 564 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:47:9:26,21:19,17:7,4:-12.7:PASS:181,0,241 chr2 234386134 . A G 503 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:198:48:10:22,26:4,9:18,17:-23.4:PASS:241,0,196 chr2 234394487 . G A 1146 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:158:35:7:17,18:7,8:10,10:-21.7:PASS:192,0,182 chr2 234394569 . A G 385 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:112:29:2:16,13:6,2:10,11:-9.2:PASS:147,0,178 chr2 234429739 . T TTTC 1323 PASS CIGAR=1M3I;RU=TTC;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:512:469:74:38,31:12,12:26,19:PASS:509,0,557 chr2 234432017 . A G 926 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:196:61:7:33,28:16,16:17,12:-21.4:PASS:231,0,283 chr2 234449316 . G A 1268 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:242:221:56:11:27,29:17,12:10,17:-23.7:PASS:256,0,240 chr2 234526871 . C G 1594 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:453:453:162:22:74,88:41,47:33,41:-65.2:PASS:370,0,370 chr2 234590970 . T G 2976 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:362:329:132:14:73,59:38,34:35,25:-35.6:PASS:364,0,370 chr2 234590974 . C A 3032 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:348:315:126:19:71,55:40,29:31,26:-40.2:PASS:349,0,370:234590974 chr2 234590975 . G A 3025 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:328:295:129:15:75,54:39,30:36,24:-32.9:PASS:330,0,370:234590974 chr2 234601669 . T G 1233 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:176:43:10:19,24:17,17:2,7:-23.7:PASS:239,0,173 chr2 234601965 . A G 1705 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:301:268:103:9:57,46:40,28:17,18:-33.6:PASS:303,0,370 chr2 234602202 . A C 2382 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:331:108:20:49,59:21,31:28,28:-44.5:PASS:370,0,328 chr2 234602277 . G T 2693 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:363:363:116:19:55,61:22,22:33,39:-38.3:PASS:370,0,360 chr2 234622429 . T C 1941 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:348:315:108:21:57,51:23,16:34,35:-27:PASS:350,0,370 chr2 234627937 . T C 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:370:370:124:25:0,124:0,66:0,58:-161.5:PASS:370,370,0 chr2 234637803 . T C 1219 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:247:246:70:12:33,37:32,31:1,6:-20.9:PASS:295,0,244 chr2 234637853 . G A 1174 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:71:17:41,30:30,18:11,12:-24.1:PASS:216,0,340 chr2 234637912 . T C 1829 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:238:71:25:32,39:19,28:13,11:-22.6:PASS:328,0,235 chr2 234638249 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:454:421:152:22:80,72:35,36:45,36:-49:PASS:370,0,370 chr2 234688036 . C A 2450 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:12:0,35:0,21:0,14:-47.4:PASS:370,105,0 chr2 234702459 . T C 1074 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:171:41:10:20,21:8,12:12,9:-19.5:PASS:205,0,204 chr2 234704318 . A G 1482 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:208:208:63:14:27,36:13,19:14,17:-33.1:PASS:310,0,205 chr2 234704690 . T C 2257 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:10:0,38:0,18:0,20:-58.7:PASS:370,114,0 chr2 234707460 . G C 1446 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:10:0,43:0,17:0,26:-54.6:PASS:370,129,0 chr2 234725502 . T C 2140 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:8:0,41:0,17:0,24:-55.5:PASS:370,123,0 chr2 234727986 . C T 1506 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:11:0,27:0,22:0,5:-24.8:PASS:370,81,0 chr2 234728078 . T C 1576 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:6:0,34:0,18:0,16:-53:PASS:370,102,0 chr2 234758500 . G A 2366 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:15:0,48:0,6:0,42:-25.6:PASS:370,144,0 chr2 234967539 . T A 3029 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:295:295:99:8:0,99:0,44:0,55:-128.2:PASS:370,298,0 chr2 235949877 . T C 2218 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:290:257:82:20:43,39:22,15:21,24:-24.4:PASS:291,0,338 chr2 235949920 . A G 2345 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:329:325:93:19:45,48:19,21:26,27:-38:PASS:362,0,326 chr2 235950002 . G A 2050 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:248:73:15:33,40:13,21:20,19:-33:PASS:331,0,245 chr2 235950187 . T C 3009 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:17:0,64:0,30:0,34:-88.4:PASS:370,193,0 chr2 235950284 . A C 2034 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:192:63:14:35,28:21,12:14,16:-20.7:PASS:227,0,303 chr2 235951819 . A G 2392 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:246:246:67:5:31,36:10,12:21,24:-27.6:PASS:299,0,243 chr2 236708166 . C T 882 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:60:8:33,27:9,7:24,20:-15.9:PASS:217,0,292 chr2 236761396 . C T 593 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:243:210:82:15:47,35:26,24:21,11:-16.9:PASS:245,0,370 chr2 236957822 . G A 2256 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:20:0,50:0,26:0,24:-72.9:PASS:370,150,0 chr2 237032607 . T G 1265 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:122:27:11:15,12:11,4:4,8:-11.9:PASS:157,0,184 chr2 237032703 . T C 1161 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:34:19:20,14:7,8:13,6:-12.9:PASS:144,0,213 chr2 237374309 . C T 1856 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:9:0,77:0,22:0,55:-66.8:PASS:370,232,0 chr2 238243292 . G A 971 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:7:0,35:0,29:0,6:-26.5:PASS:370,105,0 chr2 238243464 . C G 2051 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:4:0,39:0,10:0,29:-36.7:PASS:370,117,0 chr2 238244963 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:10:0,81:0,58:0,23:-69.9:PASS:370,244,0 chr2 238249550 . G A 429 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:213:51:11:24,27:12,9:12,18:-20.4:PASS:250,0,213 chr2 238249630 . C T 1152 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:16:0,46:0,14:0,32:-46.4:PASS:370,138,0 chr2 238258814 . C G 799 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:10:0,32:0,20:0,12:-41.6:PASS:370,96,0 chr2 238296769 . G A 367 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:160:69:7:42,27:13,11:29,16:-21.7:PASS:195,0,367 chr2 238733016 . G A 2472 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:236:132:16:82,50:33,27:49,23:-21.8:PASS:271,0,370 chr2 238896627 . T C 385 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:61:11:38,23:14,16:24,7:-8.6:PASS:180,0,350 chr2 238973062 . A G 1477 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:215:60:7:26,34:13,15:13,19:-30.3:PASS:302,0,212 chr2 238990388 . G A 586 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:196:79:15:45,34:25,22:20,12:-18.1:PASS:231,0,363 chr2 238991938 . T C 958 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:300:267:102:12:57,45:25,27:32,18:-22.7:PASS:301,0,370 chr2 239010719 . T C 1067 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:9:0,30:0,6:0,24:-25.9:PASS:370,90,0 chr2 239013311 . G A 363 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:158:43:15:22,21:13,18:9,3:-8.8:PASS:192,0,204 chr2 239016539 . C G 1228 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:134:39:16:14,25:10,13:4,12:-30.2:PASS:263,0,131 chr2 239039637 . T C 885 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:133:26:8:11,15:8,7:3,8:-19.1:PASS:189,0,130 chr2 239039841 . A G 744 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:141:29:10:12,17:6,12:6,5:-17.3:PASS:207,0,138 chr2 239039896 . G C 714 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:34:8:18,16:11,5:7,11:-13.9:PASS:176,0,198 chr2 239039981 . A G 536 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:147:44:6:16,28:8,20:8,8:-20.9:PASS:283,0,144 chr2 239040187 . T C 1087 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:177:42:14:21,21:18,16:3,5:-18.3:PASS:212,0,213 chr2 239050033 . C T 950 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:154:36:12:18,18:13,11:5,7:-21.3:PASS:189,0,191 chr2 239051550 . T C 1495 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:12:0,32:0,12:0,20:-43:PASS:370,96,0 chr2 239059484 . T C 2931 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:19:0,63:0,40:0,23:-71:PASS:370,190,0 chr2 239162182 . C T 412 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:110:62:36:41,21:18,15:23,6:-6.4:PASS:144,0,365 chr2 239165663 . T C 1127 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:339:339:103:20:49,54:21,17:28,37:-28.8:PASS:370,0,336 chr2 239988511 . G A 366 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:57:72:24:53,19:31,6:22,13:-1:PASS:92,0,370 chr2 240003873 . G A 383 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:116:23:10:12,11:5,3:7,8:-13.5:PASS:151,0,161 chr2 240981262 . A C 2280 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:13:0,71:0,45:0,26:-78.6:PASS:370,214,0 chr2 240981375 . T A 1681 PASS SNVHPOL=2;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:24:0,59:0,23:0,36:-69.4:PASS:370,178,0 chr2 240981459 . A G 79 PASS SNVHPOL=2;MQ=37;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:58:25:19:1:13,6:0,0:13,6:0:PASS:60,0,126 chr2 240981487 . A G 158 PASS SNVHPOL=2;MQ=24;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:0:0,6:0,0:0,6:0:PASS:108,18,0 chr2 240982220 . T C 43 PASS SNVHPOL=2;MQ=33;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:61:38:11:1:5,6:5,6:0,0:0:PASS:72,0,58 chr2 240984789 . C T 1052 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:302:269:94:22:51,43:28,28:23,15:-23.7:PASS:303,0,370 chr2 240985099 . G A 1010 PASS SNVHPOL=3;MQ=41;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:14:0,26:0,8:0,18:-32.3:PASS:370,78,0 chr2 240985160 . G A 376 PASS SNVHPOL=2;MQ=41;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:171:43:10:18,25:10,17:8,8:-20.7:PASS:246,0,168 chr2 240985347 . G A 1092 PASS SNVHPOL=2;MQ=52;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:17:0,41:0,30:0,11:-38.1:PASS:370,123,0 chr2 241066280 . C T 900 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:57:17:34,23:15,12:19,11:-17.4:PASS:178,0,300 chr2 241066325 . A C 1098 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:184:46:20:23,23:5,6:18,17:-18.8:PASS:219,0,210 chr2 241402836 . G A 651 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:53:53:32:12:1,31:0,14:1,17:-46.4:PASS:370,56,0 chr2 241404317 . C T 2979 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:42:0,64:0,35:0,29:-85:PASS:370,193,0 chr2 241405483 . G A 311 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:128:95:39:11:24,15:18,14:6,1:-3.6:PASS:130,0,246:. chr2 241405485 . C T 822 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:96:96:33:17:0,33:0,30:0,3:-18.4:PASS:370,99,0:. chr2 241405528 . A G 2171 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:14:0,40:0,30:0,10:-36.8:PASS:370,120,0 chr2 241439391 . C G 211 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:139:35:3:19,16:9,11:10,5:-13.5:PASS:174,0,204 chr2 241463453 . C A 321 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:52:15:29,23:11,11:18,12:-22:PASS:200,0,262 chr2 241463639 . C T 284 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:40:12:22,18:11,7:11,11:-14.6:PASS:170,0,216 chr2 241531479 . A G 402 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:69:16:39,30:8,12:31,18:-25.1:PASS:227,0,325 chr2 241536126 . A G 259 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:98:43:17:28,15:16,10:12,5:-11.8:PASS:133,0,273 chr2 241538074 . A G 1567 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:2:0,17:0,8:0,9:-32.8:PASS:293,51,0 chr2 241570249 . A C 1577 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:100:100:39:16:0,38:0,18:0,20:-55.5:PASS:370,114,0 chr2 241621799 . GC G 1814 PASS CIGAR=1M1D;RU=C;REFREP=1;IDREP=0;MQ=39;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:216:199:29:15,14:13,12:2,2:PASS:239,0,213 chr2 241621869 . G A 186 PASS SNVHPOL=2;MQ=52;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:33:20:22,11:10,3:12,8:-10:PASS:120,0,249 chr2 241622195 . T C 846 PASS SNVHPOL=2;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:23:9:16,7:7,1:9,6:-2.9:PASS:86,0,201 chr2 241622209 . T C 1290 PASS SNVHPOL=5;MQ=54;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:6:0,28:0,12:0,16:-41.7:PASS:370,84,0 chr2 241631413 . T G 398 PASS SNVHPOL=4;MQ=57;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:67:21:43,24:32,10:11,14:-8.4:PASS:160,0,365 chr2 241696840 . ATCC A 2201 PASS CIGAR=1M3D;RU=TCC;REFREP=11;IDREP=10;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:129:129:58:1,45:1,33:0,12:PASS:999,132,0 chr2 241713646 . A G 419 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:189:47:9:20,27:9,9:11,18:-22.2:PASS:262,0,186 chr2 241808314 . C T 746 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:92:53:23:36,17:14,6:22,11:-12.3:PASS:127,0,335 chr2 241808685 . C T 1084 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:56:15:31,25:14,16:17,9:-16:PASS:205,0,287 chr2 241817516 . A G 1589 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:123:123:42:8:13,29:6,16:7,13:-31.7:PASS:302,0,120 chr2 241828034 . A G 1357 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:64:64:27:11:0,26:0,10:0,16:-36.1:PASS:370,78,0 chr2 241979550 . T C 369 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:249:217:59:15:30,29:22,23:8,6:-17:PASS:251,0,256 chr2 242066314 . T C 292 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:172:45:14:23,22:7,13:16,9:-17:PASS:206,0,213 chr2 242077496 . C T 873 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:44:6:27,17:8,6:19,11:-17.3:PASS:162,0,268 chr2 242082262 . T C 1312 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:285:277:76:4:37,39:29,30:8,9:-22.7:PASS:313,0,282 chr2 242129487 . G T 278 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:39:12:21,18:11,12:10,6:-15.9:PASS:181,0,219 chr2 242149010 . C T 266 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:104:71:38:23:24,14:3,2:21,12:-6.9:PASS:106,0,256 chr2 242151585 . C T 1911 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:9:0,35:0,16:0,19:-51.6:PASS:370,105,0 chr2 242157228 . G T 946 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:8:0,18:0,1:0,17:-7.3:PASS:271,54,0 chr2 242163359 . G A 1888 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:9:0,44:0,35:0,9:-34.7:PASS:370,132,0 chr2 242179134 . G A 1720 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:15:0,39:0,16:0,23:-52.1:PASS:370,117,0 chr2 242192848 . T C 2095 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:5:0,46:0,22:0,24:-68.6:PASS:370,138,0 chr2 242203916 . A C 2226 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:7:0,39:0,27:0,12:-40:PASS:370,117,0 chr2 242407746 . A G 1656 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:12:0,53:0,17:0,36:-54.9:PASS:370,160,0 chr2 242572363 . G A 398 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:203:49:11:22,27:17,19:5,8:-23.4:PASS:256,0,200 chr2 242610738 . T C 250 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:31:14:18,13:14,12:4,1:-5.9:PASS:129,0,193 chr2 242610773 . T A 1334 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:20:0,32:0,21:0,11:-39.5:PASS:370,96,0 chr2 242618050 . A G 872 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:46:4:24,22:6,1:18,21:-3.6:PASS:187,0,237 chr2 242674803 . G A 490 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:119:86:16:7:10,6:6,3:4,3:-13.2:PASS:120,0,158 chr2 242690675 . G A 727 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:184:64:25:35,29:29,26:6,3:-10.2:PASS:219,0,306 chr2 242758179 . C T 364 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:196:66:14:36,30:14,8:22,22:-15.3:PASS:231,0,301 chr2 242793273 . A G 1513 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:210:56:23:25,31:13,15:12,16:-30.2:PASS:276,0,207 chr2 242814009 . G A 707 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:52:15:30,22:14,11:16,11:-19.7:PASS:183,0,276 chr3 391100 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:14:0,88:0,50:0,38:-110.8:PASS:370,265,0 chr3 439963 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:17:0,85:0,44:0,41:-115.9:PASS:370,256,0 chr3 440028 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:245:245:96:12:1,95:0,44:1,51:-123.9:PASS:370,248,0 chr3 1424850 . T G 2284 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:343:343:115:12:0,115:0,46:0,69:-131:PASS:370,346,0 chr3 3076401 . C T 1356 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:237:204:83:11:49,34:26,15:23,19:-23:PASS:239,0,370 chr3 3076443 . A G 1506 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:220:94:11:55,39:16,17:39,22:-26.7:PASS:254,0,370 chr3 3081750 . A T 611 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:185:54:11:29,25:19,21:10,4:-12:PASS:219,0,256 chr3 3081825 . T C 2725 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:113:113:52:12:1,51:1,27:0,24:-71:PASS:370,116,0 chr3 3139957 . T C 1454 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:256:74:8:37,37:12,14:25,23:-30.5:PASS:291,0,292 chr3 3170792 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:295:295:99:12:0,99:0,50:0,49:-140.7:PASS:370,298,0 chr3 3189279 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:14:0,81:0,38:0,43:-108.6:PASS:370,244,0 chr3 3215901 . G A 682 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:224:191:58:6:31,27:10,10:21,17:-23.1:PASS:226,0,273 chr3 3886580 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:355:355:119:21:0,119:0,66:0,53:-149.4:PASS:370,358,0 chr3 3887876 . T C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:412:412:138:14:0,138:0,75:0,63:-174.4:PASS:370,370,0 chr3 4358210 . A G 798 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:5:0,14:0,3:0,11:-19.4:PASS:256,42,0 chr3 4403837 . A G 1686 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:299:266:107:18:61,46:41,32:20,14:-24:PASS:301,0,370 chr3 4712413 . G A 2729 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:11:0,58:0,47:0,11:-39.7:PASS:370,175,0 chr3 4716811 . A C 571 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:71:13:43,28:30,19:13,9:-20.3:PASS:208,0,370 chr3 4767262 . T C 1961 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:6:0,49:0,24:0,25:-74.1:PASS:370,147,0 chr3 4817057 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:12:0,68:0,19:0,49:-60.2:PASS:370,205,0 chr3 4842231 . C T 863 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:279:246:77:9:40,36:15,7:25,29:-14.6:PASS:281,0,323 chr3 4856180 . T C 1414 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:203:79:8:45,34:29,13:16,21:-13.8:PASS:238,0,368 chr3 4856234 . G A 926 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:219:53:22:25,28:12,8:13,20:-17.2:PASS:256,0,220 chr3 4878595 . C A 475 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:47:26:28,19:10,10:18,9:-16.3:PASS:170,0,265 chr3 5241309 . C A 3036 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:12:0,58:0,24:0,34:-74.4:PASS:370,175,0 chr3 6903297 . C T 550 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:196:53:17:27,26:16,16:11,10:-22.2:PASS:231,0,245 chr3 7620789 . T C 1631 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:258:225:90:15:51,39:27,15:24,24:-19.4:PASS:259,0,370 chr3 7721769 . A G 854 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:290:257:80:4:42,38:27,23:15,15:-30.2:PASS:292,0,335 chr3 8590313 . T C 712 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:209:57:20:25,32:20,14:5,18:-23.9:PASS:282,0,206 chr3 8675539 . G A 696 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:153:37:15:19,18:7,4:12,14:-14:PASS:188,0,189 chr3 8775661 . C T 1000 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:47:11:26,21:10,6:16,15:-15.2:PASS:193,0,251 chr3 8787220 . T C 829 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:54:11:29,25:20,21:9,4:-10.7:PASS:211,0,254 chr3 8809184 . G A 318 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:105:18:4:9,9:2,3:7,6:-15:PASS:140,0,139 chr3 8809703 . G A 989 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:2:0,25:0,4:0,21:-20.4:PASS:370,75,0 chr3 8955389 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:289:289:97:6:0,97:0,47:0,50:-133.2:PASS:370,292,0 chr3 9425944 . G C 514 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:179:42:10:21,21:14,12:7,9:-24.2:PASS:214,0,212 chr3 9426224 . G A 638 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:79:7:47,31:24,21:23,10:-15.1:PASS:218,0,370 chr3 9798773 . C G 710 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:340:307:106:34:56,50:27,18:29,32:-27.1:PASS:342,0,370 chr3 9852059 . C CGAT 804 PASS CIGAR=1M3I;RU=GAT;REFREP=0;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:33:33:29:5,16:2,12:3,4:PASS:278,0,30 chr3 9912149 . G T 366 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:252:251:67:7:32,35:4,7:28,28:-20.3:PASS:293,0,249 chr3 9934605 . T C 1129 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:51:7:31,20:23,16:8,4:-14:PASS:169,0,290 chr3 9956279 . G A 684 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:38:11:20,18:6,5:14,13:-17.3:PASS:192,0,198 chr3 9960070 . C T 1564 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:78:22:48,30:30,16:18,14:-20.7:PASS:204,0,370 chr3 9970031 . A G 1898 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:12:0,37:0,18:0,19:-58:PASS:370,111,0 chr3 9970158 . C T 367 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:34:16:23,11:10,6:13,5:-11:PASS:118,0,244 chr3 9975247 . C G 912 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:9:0,16:0,5:0,11:-24.8:PASS:280,48,0 chr3 9976159 . A G 2716 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:14:0,53:0,38:0,15:-49.6:PASS:370,160,0 chr3 9991388 . G C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:12:0,65:0,34:0,31:-93.9:PASS:370,196,0 chr3 10089723 . G A 215 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:77:44:44:5:34,10:9,5:25,5:-2.8:PASS:78,0,350 chr3 10413601 . G A 222 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:47:15:32,15:15,3:17,12:-5.5:PASS:124,0,316 chr3 10413715 . G A 285 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:39:18:25,14:9,6:16,8:-16.2:PASS:142,0,260 chr3 10420087 . T C 436 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:28:6:15,13:4,6:11,7:-16.1:PASS:156,0,181 chr3 10976876 . A G 851 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:27:8:16,11:6,4:10,7:-15.1:PASS:145,0,194 chr3 11402163 . G A 447 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:144:37:5:20,17:9,8:11,9:-20.5:PASS:179,0,199 chr3 11596302 . T C 646 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:9:0,24:0,15:0,9:-32.9:PASS:356,72,0 chr3 11643465 . T C 2101 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:13:0,42:0,7:0,35:-29.7:PASS:370,126,0 chr3 11684957 . C T 887 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:284:284:81:12:38,43:16,22:22,21:-36.4:PASS:349,0,281 chr3 11887991 . C G 576 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:112:22:4:7,15:3,10:4,5:-14.8:PASS:190,0,109 chr3 12046076 . T C 502 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:0:0,9:0,1:0,8:-8.5:PASS:172,27,0 chr3 12229015 . A G 2041 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:12:0,37:0,13:0,24:-44.5:PASS:370,111,0 chr3 12232074 . A G 2605 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:13:0,56:0,28:0,28:-83.4:PASS:370,169,0 chr3 12848822 . T C 2802 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:19:0,78:0,44:0,34:-99.6:PASS:370,235,0 chr3 12856856 . A G 1336 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:4:0,22:0,9:0,13:-35.7:PASS:349,66,0 chr3 12858028 . T C 2087 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:21:0,53:0,25:0,28:-75.2:PASS:370,160,0 chr3 12858822 . C T 930 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:9:0,28:0,12:0,16:-42.6:PASS:370,84,0 chr3 12859004 . A C 1188 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:12:0,20:0,15:0,5:-22.4:PASS:315,60,0 chr3 12861586 . T C 579 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:107:20:5:10,10:5,4:5,6:-14.7:PASS:141,0,142 chr3 12861608 . G A 584 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:19:10:12,7:6,1:6,6:-3.6:PASS:100,0,165 chr3 12875443 . G A 1016 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:116:37:13:12,25:4,9:8,16:-25.6:PASS:269,0,113 chr3 12942850 . GC G 2014 PASS CIGAR=1M1D;RU=C;REFREP=2;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:152:152:39:13,22:3,20:10,2:PASS:387,0,149 chr3 12966194 . G A 233 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:117:61:20:39,22:25,7:14,15:-5.9:PASS:152,0,352 chr3 13361287 . C T 784 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:10:0,31:0,23:0,8:-32.2:PASS:370,93,0 chr3 13361391 . A G 1114 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:11:0,47:0,27:0,20:-64:PASS:370,141,0 chr3 13364876 . G T 914 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:8:0,37:0,27:0,10:-36.8:PASS:370,111,0 chr3 13367406 . C T 715 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:17:0,30:0,10:0,20:-35.8:PASS:370,90,0 chr3 13612936 . A G 1801 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:189:181:44:15:20,22:13,18:7,4:-12.6:PASS:216,0,186 chr3 13670481 . A G 1386 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:139:44:16:16,28:10,20:6,8:-22:PASS:281,0,136 chr3 13670776 . T C 1001 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:37:10:21,16:5,8:16,8:-14.4:PASS:163,0,219 chr3 13679203 . G A 508 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:46:7:24,22:17,14:7,8:-22:PASS:208,0,231 chr3 13679335 . C T 347 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:46:9:26,20:16,13:10,7:-18.3:PASS:187,0,251 chr3 14175262 . T C 378 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:35:7:21,14:15,8:6,6:-16.6:PASS:154,0,222 chr3 14197987 . A T 1707 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:5:0,31:0,10:0,21:-36.9:PASS:370,93,0 chr3 14551444 . A G 970 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:10:0,36:0,21:0,15:-49.6:PASS:370,108,0 chr3 14555216 . T C 1640 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:7:0,69:0,33:0,36:-97.3:PASS:370,208,0 chr3 14555811 . A G 533 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:8:0,22:0,16:0,6:-26.7:PASS:349,66,0 chr3 14561627 . A AG 2818 PASS CIGAR=1M1I;RU=G;REFREP=2;IDREP=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:113:113:48:1,44:0,26:1,18:PASS:977,116,0 chr3 14563258 . A G 657 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:13:0,25:0,0:0,25:0:PASS:331,75,0 chr3 14745857 . G A 1995 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:14:0,39:0,29:0,10:-38:PASS:370,117,0 chr3 14755572 . A G 2899 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:9:0,55:0,26:0,29:-79.2:PASS:370,166,0 chr3 14755617 . C G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:11:0,53:0,22:0,31:-67:PASS:370,160,0 chr3 14939479 . G T 1675 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:17:0,55:0,31:0,24:-73.8:PASS:370,166,0 chr3 15259992 . G A 448 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:242:209:69:4:38,31:25,21:13,10:-22:PASS:244,0,316 chr3 15311325 . A G 1018 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:165:34:9:15,19:4,3:11,16:-14.2:PASS:208,0,163 chr3 15610070 . C T 921 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:307:307:90:6:42,48:14,14:28,34:-29.5:PASS:370,0,304 chr3 15737689 . G A 971 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:231:208:52:5:26,26:12,16:14,10:-21.3:PASS:243,0,229 chr3 15737698 . T C 965 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:46:11:24,22:10,14:14,8:-17.8:PASS:215,0,229 chr3 16261420 . C T 625 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:208:52:5:24,28:18,18:6,10:-24.2:PASS:252,0,206 chr3 16327909 . C T 1780 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:259:84:12:36,48:16,19:20,29:-36.8:PASS:370,0,256 chr3 16358584 . T C 1926 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:12:0,44:0,8:0,36:-31.9:PASS:370,132,0 chr3 16364919 . A C 1709 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:6:0,35:0,26:0,9:-33.8:PASS:370,105,0 chr3 16364954 . C T 883 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:98:35:4:22,13:15,10:7,3:-11:PASS:133,0,242 chr3 16399552 . A T 269 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:99:99:18:4:7,11:6,6:1,5:-17.3:PASS:165,0,96 chr3 16926766 . C T 170 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:14:4:9,5:8,5:1,0:0.7:PASS:65,0,127 chr3 17051328 . T C 1941 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:273:273:115:8:45,70:15,34:30,36:-59.4:PASS:370,0,270 chr3 17051450 . C A 1129 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:324:291:110:15:61,49:28,26:33,23:-32.6:PASS:325,0,370 chr3 17053499 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:307:307:103:16:0,103:0,44:0,59:-127.9:PASS:370,310,0 chr3 17208267 . T C 238 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:32:3:16,16:13,15:3,1:-6.6:PASS:159,0,179 chr3 18392819 . C T 1578 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:240:86:21:36,50:11,21:25,29:-45:PASS:370,0,237 chr3 19959756 . G A 1093 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:64:18:40,24:23,15:17,9:-17.7:PASS:176,0,350 chr3 19961330 . C T 1720 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:50:2:30,20:18,14:12,6:-14.2:PASS:170,0,287 chr3 19962044 . G A 933 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:35:2:21,14:13,7:8,7:-16.5:PASS:156,0,232 chr3 19975215 . C A 2929 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:460:450:140:19:69,71:35,35:34,36:-54.8:PASS:370,0,370 chr3 20113830 . G A 485 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:52:8:28,24:16,16:12,8:-17.4:PASS:210,0,256 chr3 20212227 . C T 658 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:250:217:60:6:31,29:18,17:13,12:-25.8:PASS:252,0,270 chr3 21462754 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:289:289:97:9:0,97:0,70:0,27:-80.5:PASS:370,292,0 chr3 21462787 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:24:0,77:0,35:0,42:-101.2:PASS:370,232,0 chr3 21462880 . A G 479 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:254:254:67:10:31,36:3,3:28,33:-13.6:PASS:306,0,251 chr3 24006477 . T A 2404 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:11:0,45:0,32:0,13:-46.2:PASS:370,135,0 chr3 24184995 . G A 860 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:10:0,29:0,23:0,6:-26.7:PASS:370,87,0 chr3 27424718 . A G 1826 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:0:0,33:0,15:0,18:-50.7:PASS:370,99,0 chr3 27463229 . C T 1134 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:13:0,63:0,20:0,43:-63.3:PASS:370,190,0 chr3 28520417 . T A 561 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:243:210:97:14:59,38:30,10:29,28:-10.7:PASS:245,0,370 chr3 31705649 . C T 421 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:136:39:8:14,25:3,10:11,15:-27.9:PASS:263,0,133 chr3 31712393 . C T 223 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:39:16:26,13:14,4:12,9:-8.5:PASS:122,0,272 chr3 32578505 . T C 475 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:209:54:5:24,30:12,13:12,17:-27:PASS:272,0,206 chr3 32927509 . G T 2285 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:14:0,40:0,15:0,25:-50.3:PASS:370,120,0 chr3 32995928 . C T 1381 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:208:208:70:17:0,70:0,32:0,38:-95.7:PASS:370,211,0 chr3 33055688 . T C 891 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:163:46:11:24,22:13,11:11,11:-21.8:PASS:198,0,224 chr3 33055721 . A G 2443 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:10:0,40:0,12:0,28:-43.1:PASS:370,120,0 chr3 33138544 . A G 857 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:5:0,12:0,3:0,9:-19.4:PASS:233,36,0 chr3 33174156 . T G 844 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:234:59:13:27,32:12,11:15,21:-23.5:PASS:281,0,232 chr3 33174168 . G A 852 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:208:208:63:7:27,36:9,8:18,28:-21.2:PASS:319,0,204 chr3 33194990 . C A 2143 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:30:0,75:0,36:0,39:-106.2:PASS:370,226,0 chr3 33255592 . A G 1912 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:5:0,36:0,12:0,24:-41.8:PASS:370,108,0 chr3 33879770 . G A 708 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:2:0,33:0,15:0,18:-50.7:PASS:370,99,0 chr3 35725250 . C T 1825 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:261:229:64:10:32,32:20,17:12,15:-30.2:PASS:264,0,267 chr3 37458758 . A C 411 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:221:58:5:26,32:21,22:5,10:-26:PASS:280,0,218 chr3 38043056 . G A 260 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:134:21:6:9,12:6,6:3,6:-17.9:PASS:171,0,135 chr3 38164070 . CATG C 698 PASS CIGAR=1M3D;RU=ATG;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:413:370:78:45,27:17,10:28,17:PASS:410,0,689 chr3 38168125 . A C 207 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:165:132:44:12:26,18:12,6:14,12:-14:PASS:167,0,251 chr3 38271881 . C T 371 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:193:51:4:22,29:12,11:10,18:-24:PASS:274,0,190 chr3 38307510 . T C 263 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:51:21:30,21:20,14:10,7:-16.7:PASS:173,0,275 chr3 38307621 . C T 360 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:198:51:7:25,26:7,8:18,18:-22.2:PASS:233,0,223 chr3 38347633 . G A 318 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:164:41:9:18,23:12,14:6,9:-24.4:PASS:235,0,161 chr3 38347840 . C A 168 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:53:18:32,21:19,7:13,14:-9.1:PASS:163,0,290 chr3 38347851 . A G 414 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:188:61:9:26,35:11,21:15,14:-27.2:PASS:310,0,185 chr3 38349208 . T C 194 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:26:4:17,9:4,3:13,6:-11.4:PASS:105,0,199 chr3 38350479 . T C 852 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:25:11:15,10:5,7:10,3:-10.4:PASS:135,0,180 chr3 38350519 . G A 843 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:28:7:19,9:6,3:13,6:-11.5:PASS:102,0,215 chr3 38350543 . A G 965 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:80:27:7:17,10:5,4:12,6:-12.8:PASS:115,0,206 chr3 38355225 . G A 514 PASS SNVHPOL=3;MQ=57;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:4:0,17:0,10:0,7:-28.9:PASS:287,51,0 chr3 38390048 . T G 325 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:111:22:6:7,15:2,13:5,2:-9.4:PASS:198,0,108 chr3 38401839 . T C 939 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:0:0,15:0,8:0,7:-29.9:PASS:266,45,0 chr3 38404472 . C A 829 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:8:0,22:0,12:0,10:-38:PASS:352,66,0 chr3 38406773 . G T 899 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:9:0,19:0,11:0,8:-28.2:PASS:284,57,0 chr3 38408361 . G A 2978 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:9:0,55:0,25:0,30:-78.4:PASS:370,166,0 chr3 38519424 . A G 455 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:143:126:24:10:11,13:7,11:4,2:-10.6:PASS:161,0,140 chr3 38524742 . C T 1034 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:56:13:33,23:13,12:20,11:-17.4:PASS:181,0,286 chr3 38592406 . A G 2504 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:19:0,76:0,38:0,38:-110:PASS:370,229,0 chr3 38622467 . T C 980 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:4:0,32:0,20:0,12:-42.4:PASS:370,96,0 chr3 38645420 . T C 428 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:131:41:9:14,27:7,12:7,15:-29.8:PASS:281,0,128 chr3 38674712 . T C 835 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:128:25:6:12,13:4,6:8,7:-17.6:PASS:162,0,152 chr3 38739574 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:16:0,83:0,41:0,42:-117.8:PASS:370,250,0 chr3 38739845 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:18:0,72:0,38:0,34:-101:PASS:370,217,0 chr3 38763863 . G C 283 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:145:31:5:13,18:6,5:7,13:-16:PASS:202,0,142 chr3 38764998 . A G 303 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:129:23:5:11,12:6,6:5,6:-18.6:PASS:164,0,142 chr3 38766675 . A G 725 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:10:0,33:0,23:0,10:-36.8:PASS:370,99,0 chr3 38768247 . G A 247 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:30:7:18,12:12,4:6,8:-11:PASS:146,0,202 chr3 38768300 . T C 295 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:150:28:8:12,16:7,8:5,8:-21.5:PASS:198,0,147 chr3 38793989 . G A 237 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:114:38:8:24,14:10,4:14,10:-12.6:PASS:149,0,250 chr3 38798171 . C T 350 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:202:51:6:24,27:19,25:5,2:-8.4:PASS:237,0,211 chr3 38924811 . G C 308 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:164:32:4:15,17:7,12:8,5:-15.7:PASS:199,0,168 chr3 38936134 . C T 356 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:68:10:38,30:23,18:15,12:-23.1:PASS:234,0,325 chr3 38945560 . A G 401 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:216:58:7:29,29:12,8:17,21:-18.3:PASS:251,0,254 chr3 39107361 . C G 347 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:61:4:36,25:11,10:25,15:-22.8:PASS:201,0,322 chr3 39111140 . C A 2239 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:2:0,47:0,32:0,15:-50.3:PASS:370,141,0 chr3 39129629 . G A 202 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:107:74:33:7:23,10:13,8:10,2:-7:PASS:109,0,254 chr3 39152345 . G A 1046 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:3:0,36:0,28:0,8:-31:PASS:370,108,0 chr3 39161456 . G A 1564 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:3:0,28:0,13:0,15:-45.8:PASS:370,84,0 chr3 39161464 . G A 1416 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:4:0,25:0,11:0,14:-40.9:PASS:370,75,0 chr3 39184959 . C T 1275 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:186:54:19:29,25:13,15:16,10:-19.4:PASS:221,0,265 chr3 39185248 . A G 1317 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:10:0,36:0,16:0,20:-52.7:PASS:370,108,0 chr3 39229900 . T C 2354 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:16:0,50:0,27:0,23:-70.8:PASS:370,150,0 chr3 39323163 . A C 1250 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:79:79:34:7:8,26:3,18:5,8:-22.7:PASS:287,0,76 chr3 39373902 . C G 1907 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:60:12:35,25:23,20:12,5:-11.8:PASS:192,0,310 chr3 39431081 . G A 1324 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:176:176:73:15:1,72:0,24:1,48:-74.4:PASS:370,179,0 chr3 40231883 . C T 1561 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:17:0,30:0,10:0,20:-36.5:PASS:370,90,0 chr3 40251392 . T C 2097 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:5:0,28:0,21:0,7:-28.6:PASS:370,84,0 chr3 41841716 . A C 2663 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:7:0,52:0,27:0,25:-75.8:PASS:370,156,0 chr3 41925398 . C T 614 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:5:0,30:0,21:0,9:-33:PASS:370,90,0 chr3 41925423 . T C 1185 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:3:0,33:0,18:0,15:-50.9:PASS:370,99,0 chr3 41960006 . T C 478 PASS SNVHPOL=5;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:256:74:2:33,41:14,20:19,21:-39.6:PASS:347,0,253 chr3 41996136 . T C 331 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:164:42:3:17,25:12,19:5,6:-19.1:PASS:255,0,161 chr3 42236415 . A G 2867 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:17:0,53:0,16:0,37:-52.7:PASS:370,160,0 chr3 42244321 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:162:162:55:24:0,55:0,17:0,38:-53.7:PASS:370,166,0 chr3 42251263 . C T 437 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:125:23:7:11,12:8,9:3,3:-13.4:PASS:160,0,139 chr3 42251329 . C T 594 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:152:29:5:12,17:8,10:4,7:-21.7:PASS:203,0,149 chr3 42251577 . C CGGA,CGGAGGA 382 PASS CIGAR=1M3I,1M6I;RU=GGA,GGA;REFREP=10,10;IDREP=11,12;MQ=60;AC=1,0;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:78:77:34:13,7,4:6,4,4:7,3,0:PASS:110,0,185,55,142,256 chr3 42568929 . T C 1093 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:3:0,13:0,4:0,9:-22:PASS:244,39,0 chr3 42599091 . G A 1549 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:22:0,50:0,27:0,23:-70.5:PASS:370,150,0 chr3 42610374 . A G 2037 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:54:8:0,54:0,45:0,9:-35.5:PASS:370,163,0 chr3 42610515 . G A 1888 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:131:131:58:14:1,57:0,15:1,42:-49.5:PASS:370,134,0 chr3 42700630 . A G 986 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:12:0,23:0,6:0,17:-25.5:PASS:350,69,0 chr3 42728144 . A G 1602 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:6:0,40:0,15:0,25:-48.5:PASS:370,120,0 chr3 42733468 . T C 1249 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:114:35:5:21,14:16,7:5,7:-12.7:PASS:149,0,225 chr3 42735150 . T C 1465 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:39:26:27,12:11,7:16,5:-9.3:PASS:118,0,288 chr3 42735274 . A G 1342 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:84:39:6:26,13:7,5:19,8:-12.5:PASS:119,0,272 chr3 42906116 . T C 457 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:239:206:69:13:38,31:27,22:11,9:-20.7:PASS:241,0,323 chr3 42917047 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:229:229:77:26:0,77:0,44:0,33:-96.1:PASS:370,232,0 chr3 42954793 . G A 764 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:169:56:4:22,34:8,15:14,19:-34.3:PASS:319,0,166 chr3 42956273 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:298:298:100:37:0,100:0,31:0,69:-92.6:PASS:370,301,0 chr3 43073761 . G A 242 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:152:32:4:16,16:14,13:2,3:-15.9:PASS:187,0,171 chr3 43074430 . A G 3001 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:9:0,59:0,20:0,39:-63.6:PASS:370,178,0 chr3 43074434 . C T 450 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:179:55:12:22,33:8,10:14,23:-25.5:PASS:310,0,176 chr3 43074871 . A G 1739 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:2:0,35:0,13:0,22:-45.6:PASS:370,105,0 chr3 43095101 . A G 212 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:108:16:4:8,8:2,4:6,4:-14.8:PASS:143,0,122 chr3 43097710 . A G 304 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:121:27:6:14,12:10,9:4,3:-14.2:PASS:156,0,174 chr3 43121559 . C T 1774 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:28:0,49:0,36:0,13:-43.2:PASS:370,147,0 chr3 43381785 . C T 855 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:302:302:103:12:45,58:33,40:12,18:-37.8:PASS:370,0,299 chr3 43389239 . C T 453 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:245:78:23:34,44:21,22:13,22:-37.4:PASS:357,0,242 chr3 43389509 . A G 593 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:255:255:73:22:33,40:17,17:16,23:-33:PASS:341,0,252 chr3 43414318 . A G 1133 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:45:45:16:6:0,16:0,6:0,10:-27.4:PASS:276,48,0 chr3 43591299 . G A 281 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:30:2:17,13:12,5:5,8:-13.2:PASS:162,0,203 chr3 44283672 . T C 827 PASS SNVHPOL=8;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:11:0,38:0,31:0,7:-27.7:PASS:370,114,0 chr3 44283808 . C A 1002 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:19:0,44:0,11:0,33:-39.5:PASS:370,132,0 chr3 44540791 . TTC T 3070 PASS CIGAR=1M2D;RU=TC;REFREP=3;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:110:110:142:15,123:13,62:2,61:PASS:999,113,0 chr3 44607013 . T C 345 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:203:53:10:26,27:18,25:8,2:-8.4:PASS:237,0,233 chr3 44611896 . A G 495 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:284:251:90:29:49,41:26,15:23,26:-22.6:PASS:286,0,370 chr3 44612050 . C T 576 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:283:250:82:47:44,38:33,18:11,20:-23.7:PASS:285,0,345 chr3 44775962 . A G 2785 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:326:293:111:13:61,50:46,35:15,15:-30.6:PASS:328,0,370 chr3 44794881 . A C 581 PASS SNVHPOL=6;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:345:312:100:11:51,49:29,30:22,19:-31.7:PASS:346,0,370 chr3 44881909 . A G 1319 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:35:2:21,14:7,4:14,10:-12.7:PASS:148,0,225 chr3 44929287 . G C 431 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:24:4:14,10:7,4:7,6:-11.3:PASS:129,0,162 chr3 44943069 . C T 1443 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:13:0,21:0,14:0,7:-29.2:PASS:321,63,0 chr3 44943104 . G C 329 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:131:26:7:10,16:5,8:5,8:-23:PASS:201,0,128 chr3 44943389 . G A 1696 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:14:0,34:0,17:0,17:-56.2:PASS:370,102,0 chr3 44948479 . C T 1517 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:7:0,25:0,18:0,7:-28.1:PASS:365,75,0 chr3 44948590 . G A 1680 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:8:0,49:0,27:0,22:-69.2:PASS:370,147,0 chr3 44948674 . G C 182 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:28:16:17,11:4,4:13,7:-13.8:PASS:124,0,207 chr3 45017782 . A G 128 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:66:65:6:2:2,4:1,3:1,1:-8:PASS:107,0,63 chr3 45052775 . G C 2148 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:8:0,39:0,17:0,22:-55.5:PASS:370,117,0 chr3 45077123 . G A 1098 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:43:12:23,19:19,12:4,7:-19.5:PASS:181,0,225 chr3 45127515 . T C 1720 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:16:0,51:0,15:0,36:-49.9:PASS:370,153,0 chr3 45527218 . T C 169 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:87:54:23:4:16,7:7,3:9,4:-9.2:PASS:89,0,214 chr3 45533224 . G A 216 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:25:10:15,10:7,5:8,5:-12.2:PASS:122,0,190 chr3 45559519 . T C 583 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:3:0,24:0,9:0,15:-32:PASS:357,72,0 chr3 45565554 . A G 694 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:10:0,37:0,17:0,20:-53.1:PASS:370,111,0 chr3 45637253 . C T 1234 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:98:98:36:18:0,35:0,27:0,8:-30.4:PASS:370,105,0 chr3 45637439 . T C 1663 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:86:86:43:12:1,42:1,24:0,18:-57.6:PASS:370,89,0 chr3 45779136 . A T 881 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:166:36:3:15,21:6,11:9,10:-25:PASS:231,0,163 chr3 45817328 . C T 213 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:150:27:17:12,15:5,10:7,5:-15.4:PASS:185,0,154 chr3 45817418 . A G 1442 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:8:0,36:0,17:0,19:-55.9:PASS:370,108,0 chr3 45837886 . G C 167 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:91:14:7:7,7:0,2:7,5:-14:PASS:132,0,90 chr3 45869972 . C T 363 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:73:13:42,31:30,21:12,10:-21.2:PASS:223,0,350 chr3 45996761 . G A 1217 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:107:31:6:18,13:14,7:4,6:-13:PASS:141,0,208 chr3 45999910 . T C 508 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:294:268:77:6:38,39:22,23:16,16:-31.1:PASS:302,0,292 chr3 46009491 . C T 641 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:56:9:32,24:10,13:22,11:-15.3:PASS:191,0,287 chr3 46010077 . C T 1108 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:171:40:12:19,21:13,10:6,11:-22:PASS:206,0,191 chr3 46021218 . G T 2027 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:212:52:11:24,28:19,18:5,10:-26.6:PASS:248,0,216 chr3 46399208 . G A 450 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:203:62:12:26,36:12,18:14,18:-36.3:PASS:318,0,200 chr3 46399798 . T C 2233 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:397:397:120:13:58,62:30,27:28,35:-43.2:PASS:370,0,370 chr3 46449978 . A C 1825 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:256:256:68:18:32,36:25,20:7,16:-31.7:PASS:302,0,253 chr3 46450070 . T A 2370 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:295:295:108:14:46,62:30,33:16,29:-54:PASS:370,0,292 chr3 46480958 . C G 898 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:7:0,36:0,4:0,32:-19.9:PASS:370,108,0 chr3 46501284 . C CCTT 3070 PASS CIGAR=1M3I;RU=CTT;REFREP=0;IDREP=1;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:140:140:52:0,47:0,21:0,26:PASS:999,143,0 chr3 46580591 . G T 849 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:8:0,45:0,19:0,26:-61.7:PASS:370,135,0 chr3 46586622 . T C 314 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:141:29:6:12,17:8,9:4,8:-22.5:PASS:200,0,138 chr3 46592987 . A G 358 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:244:218:60:11:29,31:12,18:17,13:-24.7:PASS:253,0,242 chr3 46658737 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:7:0,74:0,29:0,45:-86.5:PASS:370,223,0 chr3 46713457 . C G 725 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:197:50:12:25,25:16,13:9,12:-25.5:PASS:232,0,232 chr3 46729757 . C G 359 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:147:46:6:26,20:10,8:16,12:-19.7:PASS:181,0,255 chr3 46751073 . TAAGAAG TAAG,T 3070 PASS CIGAR=1M3D3M,1M6D;RU=AAG,AAG;REFREP=9,9;IDREP=8,7;MQ=60;AC=1,0;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:353:353:63:25,26,0:10,12,0:15,14,0:PASS:447,0,350,478,430,892 chr3 46944274 . T C 439 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:36:10:19,17:12,10:7,7:-18.8:PASS:181,0,198 chr3 47018214 . T C 921 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:3:0,19:0,8:0,11:-30.6:PASS:306,57,0 chr3 47036756 . C G 601 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:62:11:36,26:11,9:25,17:-20.5:PASS:211,0,315 chr3 47043538 . C T 635 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:186:66:12:37,29:17,14:20,15:-24.6:PASS:221,0,311 chr3 47043622 . G A 659 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:174:141:48:18:28,20:11,11:17,9:-17.3:PASS:176,0,268 chr3 47045739 . C G 582 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:30:9:16,14:6,7:10,7:-17.7:PASS:156,0,183 chr3 47125385 . G A 953 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:230:197:77:12:45,32:18,17:27,15:-21:PASS:231,0,366 chr3 47162661 . A G 1474 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:335:302:99:11:51,48:22,27:29,21:-30:PASS:337,0,369 chr3 47282303 . G A 942 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:199:47:5:21,26:13,18:8,8:-19.7:PASS:251,0,196 chr3 47449058 . T C 1287 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:7:0,24:0,18:0,6:-27.7:PASS:370,72,0 chr3 47452087 . G A 961 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:10:0,15:0,4:0,11:-21.7:PASS:268,45,0 chr3 47459679 . C T 335 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:91:13:2:5,8:4,6:1,2:-13.3:PASS:138,0,88 chr3 47462200 . T C 1235 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:10:0,22:0,13:0,9:-33.6:PASS:338,66,0 chr3 47618953 . C A 402 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:155:128:23:3:11,12:3,3:8,9:-15.2:PASS:163,0,153 chr3 47891036 . C T 419 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:152:48:12:27,21:13,12:14,9:-18.6:PASS:187,0,253 chr3 47956424 . C T 790 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:184:70:13:41,29:11,12:30,17:-23.7:PASS:219,0,346 chr3 47969734 . G A 308 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:49:6:27,22:21,15:6,7:-21.3:PASS:205,0,261 chr3 48309828 . C G 517 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:307:276:81:18:41,40:29,24:12,16:-33.2:PASS:310,0,310 chr3 48419897 . C T 1546 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:163:130:45:5:27,18:11,7:16,11:-17.4:PASS:164,0,267:48419897 chr3 48419898 . G A 384 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1|0:189:189:44:5:20,24:8,9:12,15:-23.2:PASS:245,0,186:48419897 chr3 48422235 . T A 317 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:222:190:48:8:24,24:9,15:15,9:-17.7:PASS:225,0,227 chr3 48461313 . C G 415 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:82:15:8:9,6:6,4:3,2:-11.9:PASS:117,0,138 chr3 48474249 . A G 308 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:137:36:12:19,17:8,11:11,6:-13.8:PASS:172,0,193 chr3 48476431 . C G 1504 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:11:0,36:0,13:0,23:-43.5:PASS:370,108,0 chr3 48508585 . C T 412 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:232:199:71:27:40,31:15,7:25,24:-14.9:PASS:234,0,330 chr3 48625266 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:21:0,68:0,44:0,24:-74.8:PASS:370,205,0 chr3 48628014 . G A 246 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:28:5:15,13:5,4:10,9:-16:PASS:163,0,188 chr3 48727112 . G A 1157 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:2:0,38:0,23:0,15:-51:PASS:370,114,0 chr3 49054692 . T C 1113 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:9:0,33:0,18:0,15:-49.8:PASS:370,99,0 chr3 49138810 . T C 400 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:175:42:6:18,24:9,8:9,16:-21.2:PASS:250,0,172 chr3 49273996 . C T 1237 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:8:0,37:0,31:0,6:-26.1:PASS:370,111,0 chr3 49343175 . G A 186 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:78:35:6:24,11:19,6:5,5:-9.4:PASS:113,0,265 chr3 49362369 . C T 296 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:163:36:9:17,19:9,7:8,12:-18.6:PASS:200,0,165 chr3 49394834 . G A 249 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:125:36:16:21,15:13,10:8,5:-15.9:PASS:160,0,218 chr3 49395673 . GGCCGCC G,GGCC 1085 PASS CIGAR=1M6D,1M3D3M;RU=GCC,GCC;REFREP=6,6;IDREP=4,5;MQ=59;AC=1,1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/2:131:131:26:0,12,11:0,1,2:0,11,9:PASS:462,204,153,221,0,173 chr3 49455330 . C T 211 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:119:22:3:11,11:3,6:8,5:-16:PASS:154,0,143 chr3 49548008 . C G 1796 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:8:0,27:0,21:0,6:-23.6:PASS:370,81,0 chr3 49548226 . A G 306 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:155:35:11:17,17:5,8:12,9:-21.2:PASS:189,0,185 chr3 49570200 . C T 215 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:144:50:12:30,20:9,8:21,12:-20.1:PASS:179,0,290 chr3 49690199 . G A 1468 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:22:0,38:0,10:0,28:-36.3:PASS:370,114,0 chr3 49690496 . C T 302 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:187:154:43:10:23,20:10,8:13,12:-18.7:PASS:189,0,223 chr3 49701983 . G A 188 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:27:8:17,10:7,6:10,4:-12.1:PASS:130,0,209 chr3 49714225 . T C 162 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:71:38:26:6:21,5:12,2:9,3:-5.6:PASS:73,0,257 chr3 49721532 . G A 289 PASS SNVHPOL=3;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:117:117:37:10:12,25:5,17:7,8:-21.9:PASS:265,0,114 chr3 49721798 . C A 371 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:176:44:4:19,25:7,11:12,14:-25.4:PASS:235,0,173 chr3 49722761 . C A 255 PASS SNVHPOL=3;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:25:8:14,11:5,4:9,7:-14.1:PASS:138,0,176 chr3 49723147 . T C 473 PASS SNVHPOL=3;MQ=56;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:100:39:14:11,27:6,15:5,12:-30.8:PASS:290,0,97 chr3 49723784 . C A 604 PASS SNVHPOL=5;MQ=51;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:115:27:14:10,17:2,8:8,9:-22.5:PASS:211,0,112 chr3 49724808 . T C 3070 PASS SNVHPOL=4;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:451:451:151:33:0,151:0,90:0,61:-170.5:PASS:370,370,0 chr3 49726070 . G A 28 PASS SNVHPOL=3;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:53:21:77:15:60,17:30,8:30,9:-4.7:PASS:55,0,370 chr3 49737954 . G A 208 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:41:12:24,17:16,12:8,5:-14.3:PASS:164,0,247 chr3 49738945 . C T 395 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:87:54:17:3:10,7:4,6:6,1:-1.1:PASS:89,0,158 chr3 49751585 . C T 339 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:109:80:14:8:8,6:1,2:7,4:-12.7:PASS:115,0,109 chr3 49760039 . T C 1639 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:6:0,28:0,19:0,9:-34:PASS:370,84,0 chr3 49830032 . C T 102 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:91:58:22:3:16,6:7,3:9,3:-10.2:PASS:93,0,193 chr3 49898273 . A G 1352 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:69:69:24:3:0,24:0,15:0,9:-34.8:PASS:370,72,0 chr3 49899795 . G A 325 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:120:87:20:6:11,9:6,1:5,8:-4.5:PASS:122,0,153 chr3 49928691 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:259:259:87:16:0,87:0,61:0,26:-80.2:PASS:370,262,0 chr3 49936102 . T C 2590 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:15:0,56:0,37:0,19:-61.7:PASS:370,169,0 chr3 49946812 . G A 356 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:145:30:6:15,15:1,3:14,12:-16.6:PASS:180,0,159 chr3 49949071 . A G 650 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:42:13:21,21:8,9:13,12:-21.9:PASS:202,0,210 chr3 50114515 . C T 548 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:139:32:3:17,15:6,3:11,12:-13.2:PASS:174,0,187 chr3 50144951 . T C 597 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:116:19:4:9,10:5,6:4,4:-14.9:PASS:151,0,138 chr3 50153356 . T C 811 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:180:41:5:20,21:8,13:12,8:-19:PASS:215,0,201 chr3 50222926 . T A 682 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:168:35:11:15,19:9,14:6,5:-17.1:PASS:214,0,166 chr3 50257389 . G A 211 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:33:22:20,13:13,9:7,4:-14.1:PASS:137,0,219 chr3 50329826 . A G 541 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:66:65:7:3:3,4:0,2:3,2:-11.9:PASS:108,0,63 chr3 50357869 . A C 864 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:114:29:7:15,13:0,4:15,9:-16.8:PASS:149,0,130 chr3 50369236 . G A 198 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:139:106:19:8:10,9:3,3:7,6:-14.3:PASS:141,0,145 chr3 50374706 . G A 77 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:81:49:10:4:6,4:4,1:2,3:-5.9:PASS:83,0,123 chr3 50379974 . G A 175 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:79:20:6:13,7:7,4:6,3:-13:PASS:114,0,185 chr3 50597092 . G A 860 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:7:0,15:0,9:0,6:-26.4:PASS:263,45,0 chr3 50598396 . G A 352 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:19:4:11,8:4,2:7,6:-11.2:PASS:124,0,158 chr3 50609624 . T G 719 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:1:0,11:0,8:0,3:-19.4:PASS:220,33,0 chr3 51929183 . C T 331 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:177:177:50:11:20,30:10,20:10,10:-23.5:PASS:279,0,174 chr3 51978220 . A G 1955 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:12:0,36:0,22:0,14:-47.9:PASS:370,108,0 chr3 52027929 . T C 32 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:32:5:0:3,2:2,1:1,1:-7.3:PASS:66,0,88 chr3 52416426 . G A 188 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:26:7:15,11:9,9:6,2:-9.8:PASS:134,0,180 chr3 52430698 . A G 1949 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:10:0,33:0,10:0,23:-37.6:PASS:370,99,0 chr3 52453893 . C T,G 863 PASS SNVHPOL=3;MQ=60;AC=2,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:4:0,12,0:0,6,0:0,6,0:-26.2:PASS:228,36,0,228,36,228 chr3 52492707 . T C 2549 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:162:162:55:8:0,55:0,37:0,18:-59.3:PASS:370,166,0 chr3 52510592 . G A 1956 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:12:0,28:0,7:0,21:-27.7:PASS:370,84,0 chr3 52521920 . C T 281 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:143:38:9:21,17:9,7:12,10:-19.3:PASS:178,0,214 chr3 52540773 . T C 1216 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:2:0,20:0,7:0,13:-29.9:PASS:327,60,0 chr3 52540842 . C T 148 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:96:18:5:10,8:4,2:6,6:-11.2:PASS:131,0,155 chr3 52544470 . A G 980 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:4:0,11:0,5:0,6:-24.5:PASS:219,33,0 chr3 52548818 . C T 118 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:77:19:5:12,7:8,5:4,2:-10.1:PASS:111,0,163 chr3 52554304 . G C 1735 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:4:0,41:0,23:0,18:-58.3:PASS:370,123,0 chr3 52561680 . C T 248 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:107:16:7:7,9:2,6:5,3:-12.3:PASS:143,0,110 chr3 52728106 . G A 394 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:178:177:39:3:18,21:9,13:9,8:-20.8:PASS:219,0,175 chr3 52834608 . G A 297 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:134:28:4:14,14:7,7:7,7:-19.1:PASS:169,0,170 chr3 52867715 . G C 1966 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:6:0,37:0,17:0,20:-55.4:PASS:370,111,0 chr3 53125922 . T C 263 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:42:7:25,17:17,10:8,7:-19.5:PASS:170,0,254 chr3 53222761 . C T 685 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:6:0,15:0,13:0,2:-12.7:PASS:255,45,0 chr3 53223927 . C G 1904 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:12:0,33:0,12:0,21:-42.8:PASS:370,99,0 chr3 53224002 . T C 1705 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:5:0,27:0,7:0,20:-29:PASS:370,81,0 chr3 53700550 . T C 2195 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:12:0,62:0,25:0,37:-76:PASS:370,187,0 chr3 53769479 . C T 1272 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:36:0,76:0,62:0,14:-47.3:PASS:370,229,0 chr3 53857803 . A C 434 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:30:30:11:1:0,11:0,5:0,6:-24.8:PASS:227,33,0 chr3 53857917 . T G 399 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:3:0,12:0,11:0,1:-9.4:PASS:210,36,0 chr3 53883722 . C G 676 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:7:0,27:0,13:0,14:-44.1:PASS:370,81,0 chr3 53899057 . A G 1402 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:11:0,82:0,27:0,55:-83.4:PASS:370,247,0 chr3 53905308 . T C 1634 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:13:0,47:0,29:0,18:-58.2:PASS:370,141,0 chr3 53906513 . G A 1427 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:1:0,33:0,17:0,16:-53.7:PASS:370,99,0 chr3 53914093 . G A 1870 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:7:0,51:0,15:0,36:-49.7:PASS:370,153,0 chr3 54354510 . T C 1417 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:183:45:3:23,22:10,12:13,10:-22:PASS:218,0,221 chr3 54930794 . C T 932 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:3:0,27:0,19:0,8:-32.1:PASS:370,81,0 chr3 56597954 . C T 3070 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:437:404:129:17:66,63:39,32:27,31:-47.2:PASS:370,0,370 chr3 56627048 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:831:831:277:33:0,277:0,185:0,92:-244.9:PASS:370,370,0 chr3 56627598 . A G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:259:259:87:13:0,87:0,56:0,31:-91.3:PASS:370,262,0 chr3 56649282 . C T 500 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:260:70:4:34,36:14,11:20,25:-21.5:PASS:295,0,274 chr3 56650012 . G C 501 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:73:8:43,30:24,11:19,19:-14.8:PASS:212,0,362 chr3 56650051 . A ACTT 1296 PASS CIGAR=1M3I;RU=CTT;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:443:443:76:33,40:11,15:22,25:PASS:696,0,440 chr3 56650054 . T TCTC 1029 PASS CIGAR=1M3I;RU=CTC;REFREP=0;IDREP=1;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:515:472:74:39,32:13,11:26,21:PASS:512,0,570 chr3 56658871 . T C 257 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:160:40:3:21,19:14,10:7,9:-21.1:PASS:195,0,211 chr3 56667682 . G C 2021 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:328:328:110:12:0,110:0,58:0,52:-148.8:PASS:370,331,0 chr3 56703746 . A C 284 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:127:40:5:24,16:19,6:5,10:-9.7:PASS:162,0,247 chr3 56716922 . T G 412 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:6:0,17:0,4:0,13:-21.7:PASS:286,51,0 chr3 56763316 . G A 743 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:101:101:37:10:0,36:0,28:0,8:-32.4:PASS:370,108,0 chr3 56763328 . T C 888 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:4:0,46:0,36:0,10:-38.2:PASS:370,138,0 chr3 56763525 . A G 416 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:243:210:68:13:37,31:20,13:17,18:-22.7:PASS:245,0,312 chr3 56763619 . A G 379 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:80:9:46,34:17,6:29,28:-11.7:PASS:247,0,370 chr3 56766353 . C T 307 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:44:8:24,20:6,8:18,12:-22:PASS:191,0,220 chr3 56766435 . C G 200 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:36:2:21,15:3,5:18,10:-17.6:PASS:161,0,232 chr3 56771251 . A C 306 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:176:158:32:6:15,17:7,11:8,6:-16.8:PASS:193,0,174 chr3 57132200 . A G 1888 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:225:67:16:30,37:21,18:9,19:-30.5:PASS:306,0,222 chr3 57136585 . C T 103 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:73:40:9:1:6,3:2,1:4,2:-7.3:PASS:75,0,133 chr3 57139972 . A G 1226 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:42:8:22,20:14,15:8,5:-14.8:PASS:194,0,221 chr3 57291038 . A G 148 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:98:65:20:6:13,7:7,1:6,6:-3.8:PASS:100,0,184 chr3 57335876 . C T 3046 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:5:0,54:0,37:0,17:-55.6:PASS:370,163,0 chr3 57386148 . C G 444 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:94:14:54,40:32,18:22,22:-23.1:PASS:268,0,370 chr3 57389060 . C T 453 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:87:8:51,36:33,23:18,13:-23.2:PASS:246,0,370 chr3 57414071 . G A 2282 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:0:0,39:0,31:0,8:-32.6:PASS:370,117,0 chr3 57414434 . A G 779 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:394:366:112:15:56,56:29,32:27,24:-37.9:PASS:370,0,370 chr3 57419497 . C T 568 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:205:83:4:32,51:8,7:24,44:-18.9:PASS:370,0,202 chr3 57430988 . G A 440 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:182:58:4:32,26:20,15:12,11:-23.4:PASS:217,0,279 chr3 57431985 . G A 469 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:302:296:83:11:40,43:10,9:30,34:-21.2:PASS:332,0,299 chr3 57445383 . C T 427 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:296:264:76:13:39,37:22,27:17,10:-19.5:PASS:298,0,304 chr3 57475351 . T G 275 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:179:49:16:25,24:11,9:14,15:-19.6:PASS:213,0,224 chr3 57496570 . C T 456 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:252:219:64:8:34,30:19,17:15,13:-26.4:PASS:254,0,297 chr3 57542173 . C T 236 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:105:17:3:8,9:4,6:4,3:-12.7:PASS:140,0,124 chr3 57882601 . C T 460 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:233:63:3:29,34:15,21:14,13:-26.9:PASS:297,0,230 chr3 58081888 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:518:485:206:47:114,91:52,37:62,54:-46.1:PASS:370,0,370 chr3 58109162 . G A 922 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:66:24:38,28:22,13:16,15:-19.5:PASS:200,0,318 chr3 58109287 . G A 524 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:263:263:76:34:35,41:18,18:17,23:-32.6:PASS:325,0,260 chr3 58112440 . A G 1612 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:64:64:27:3:0,26:0,8:0,18:-32:PASS:370,78,0 chr3 58112488 . C T 620 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:60:19:3:13,6:2,3:11,3:-6.3:PASS:95,0,180 chr3 58118555 . G A 934 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:132:99:42:4:27,15:12,12:15,3:-5.4:PASS:134,0,266 chr3 58154327 . C T 2038 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:24:0,60:0,31:0,29:-86.5:PASS:370,181,0 chr3 58191266 . C T 681 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:56:5:35,21:13,12:22,9:-13.8:PASS:164,0,324 chr3 58271099 . T G 283 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:36:1:20,16:10,6:10,10:-15.6:PASS:165,0,218 chr3 58416538 . T C 2495 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:162:162:55:5:0,55:0,14:0,41:-47.5:PASS:370,166,0 chr3 58512237 . A G 450 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:3:0,15:0,5:0,10:-23.6:PASS:259,45,0 chr3 58517520 . A G 356 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:33:33:12:6:0,12:0,5:0,7:-24:PASS:227,36,0 chr3 58552329 . C G 395 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:85:52:17:5:11,6:3,3:8,3:-9.3:PASS:87,0,163 chr3 58572625 . G A 20 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:51:20:4:0:2,2:1,0:1,2:0.7:PASS:55,0,60 chr3 62180792 . C T 340 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:97:19:4:6,13:4,10:2,3:-15.6:PASS:184,0,94 chr3 62189189 . G A 347 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:152:33:6:14,19:11,7:3,12:-17.9:PASS:216,0,149 chr3 62189432 . C G 173 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:37:4:22,15:14,11:8,4:-11.3:PASS:137,0,227 chr3 62189465 . C T 238 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:36:10:20,16:14,8:6,8:-15.3:PASS:154,0,211 chr3 62229553 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:8:0,72:0,36:0,36:-104.8:PASS:370,217,0 chr3 62253152 . T C 434 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:193:43:4:20,23:9,16:11,7:-17.9:PASS:231,0,192 chr3 63967900 . A G 801 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:484:451:171:34:91,80:45,34:46,46:-45:PASS:370,0,370 chr3 63982082 . G A 881 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:268:238:67:10:33,34:8,9:25,25:-21.9:PASS:272,0,268 chr3 64133350 . A G 2182 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:16:0,41:0,13:0,28:-44:PASS:370,123,0 chr3 65425560 . T TCTG 113 PASS CIGAR=1M3I;RU=CTG;REFREP=10;IDREP=11;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:75:50:17:10,5:5,5:5,0:PASS:72,0,155 chr3 66287056 . G A 833 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:160:72:17:44,28:21,18:23,10:-14.7:PASS:195,0,370 chr3 66419956 . C T 468 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:129:25:1:12,13:8,4:4,9:-11.7:PASS:164,0,157 chr3 66430877 . G C 783 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:224:56:7:26,30:10,7:16,23:-18.6:PASS:268,0,222 chr3 66431187 . C T 463 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:155:33:12:16,17:8,4:8,13:-13.4:PASS:190,0,172 chr3 67053926 . T C 631 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:344:311:97:5:50,47:23,33:27,14:-20.5:PASS:345,0,363 chr3 67054649 . T C 450 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:63:5:35,28:10,9:25,19:-21:PASS:216,0,310 chr3 69054341 . T C 380 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:149:32:5:13,19:8,11:5,8:-22.7:PASS:214,0,146 chr3 69096614 . G A 2747 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:8:0,53:0,39:0,14:-47.9:PASS:370,160,0 chr3 69230061 . G A 2299 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:6:0,44:0,36:0,8:-32.8:PASS:370,132,0 chr3 69230801 . G A 2743 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:12:0,54:0,17:0,37:-55.1:PASS:370,163,0 chr3 69245454 . T C 2904 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:7:0,56:0,32:0,24:-74.6:PASS:370,169,0 chr3 69246152 . A G 2986 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:9:0,69:0,27:0,42:-82.2:PASS:370,208,0 chr3 71179796 . C A 367 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:185:185:48:8:20,28:6,10:14,18:-23.8:PASS:252,0,182 chr3 72799703 . C T 377 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:162:42:7:17,25:10,11:7,14:-24.9:PASS:250,0,159 chr3 72971409 . A G 555 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:313:296:86:9:42,44:18,21:24,23:-37.5:PASS:331,0,310 chr3 73111368 . T C 2095 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:286:286:105:26:44,61:21,40:23,21:-35:PASS:370,0,283 chr3 73111481 . C CA 3070 PASS CIGAR=1M1I;RU=A;REFREP=1;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:783:783:136:59,67:27,28:32,39:PASS:999,0,780 chr3 73111809 . A G 1412 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:291:258:93:10:51,42:26,16:25,26:-23.8:PASS:292,0,370 chr3 73111973 . A G 2240 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:8:0,85:0,29:0,56:-86.4:PASS:370,256,0 chr3 73111998 . C T 1294 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:244:74:10:38,36:13,16:25,20:-31:PASS:279,0,306 chr3 73114003 . T C 384 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:54:21:20:5:16,4:14,3:2,1:-5.2:PASS:56,0,207 chr3 73453325 . C T 754 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:195:50:9:25,25:20,23:5,2:-10.5:PASS:230,0,214 chr3 74349062 . T C 233 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:121:25:6:13,12:6,9:7,3:-12.5:PASS:155,0,165 chr3 77666778 . C T 251 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:55:15:35,20:25,11:10,9:-15.7:PASS:158,0,323 chr3 78710289 . T A 489 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:354:321:113:19:60,53:34,30:26,23:-36.9:PASS:356,0,370 chr3 78717343 . C T 353 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:186:68:9:39,29:19,13:20,16:-23.1:PASS:220,0,329 chr3 81627175 . T C 502 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:249:73:17:37,36:22,20:15,16:-30.7:PASS:283,0,296 chr3 81643167 . T C 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:9:0,71:0,23:0,48:-71.2:PASS:370,214,0 chr3 81698119 . C T 418 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:244:64:2:31,33:16,6:15,27:-12.4:PASS:279,0,256 chr3 81698130 . T C 390 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:193:58:7:31,27:4,11:27,16:-23.5:PASS:228,0,276 chr3 81720076 . G A 292 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:62:3:35,27:11,10:24,17:-22.1:PASS:218,0,310 chr3 87295049 . T C 1958 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:53:6:29,24:13,6:16,18:-13.3:PASS:213,0,263 chr3 88189341 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:374:341:115:15:60,55:20,27:40,28:-37:PASS:370,0,370 chr3 88199298 . T C 1031 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:175:167:35:10:16,19:7,10:9,9:-22.1:PASS:202,0,172 chr3 89521644 . T C 342 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:62:6:33,29:18,17:15,12:-22.9:PASS:235,0,287 chr3 89521693 . T C 964 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:59:9:33,26:11,11:22,15:-23.1:PASS:205,0,291 chr3 96963004 . C T 826 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:201:68:8:27,41:14,17:13,24:-34.3:PASS:355,0,198 chr3 97194242 . C T 601 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:125:37:10:12,25:6,13:6,12:-29.9:PASS:274,0,122 chr3 97365038 . G A 1109 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:7:0,43:0,27:0,16:-51.7:PASS:370,129,0 chr3 97365074 . A G 1124 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:8:0,46:0,23:0,23:-69.8:PASS:370,138,0 chr3 97673268 . A C 1706 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:7:0,31:0,17:0,14:-46.4:PASS:370,93,0 chr3 97726747 . T A 1947 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:6:0,56:0,31:0,25:-77:PASS:370,169,0 chr3 97806616 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:373:373:125:20:0,125:0,63:0,62:-171.9:PASS:370,370,0 chr3 97851998 . A C 3070 PASS SNVHPOL=4;MQ=50;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:485:485:162:24:0,162:0,98:0,64:-179.1:PASS:370,370,0 chr3 97852083 . C T 3070 PASS SNVHPOL=2;MQ=53;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:542:542:181:16:0,181:0,98:0,83:-231.8:PASS:370,370,0 chr3 97852229 . T A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:476:476:159:27:0,159:0,76:0,83:-212.7:PASS:370,370,0 chr3 97868419 . G A 3070 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:439:439:147:12:0,147:0,82:0,65:-180.5:PASS:370,370,0:. chr3 97868616 . C T 3070 PASS SNVHPOL=3;MQ=48;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:417:417:153:18:1,152:1,101:0,51:-143.3:PASS:370,370,0 chr3 97868795 . A G 3070 PASS SNVHPOL=4;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:531:531:191:17:1,190:0,85:1,105:-234.1:PASS:370,370,0 chr3 97868970 . T A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:341:341:128:11:1,127:1,52:0,75:-138.9:PASS:370,344,0 chr3 97887865 . G A 3070 PASS SNVHPOL=2;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:358:358:120:8:0,120:0,60:0,60:-169.1:PASS:370,361,0 chr3 97887985 . T A 3070 PASS SNVHPOL=2;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:367:367:123:14:0,123:0,65:0,58:-165.5:PASS:370,370,0 chr3 97888042 . A T 3070 PASS SNVHPOL=3;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:379:379:127:9:0,127:0,70:0,57:-162:PASS:370,370,0 chr3 97888197 . C T 3070 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:501:501:181:10:1,180:1,110:0,70:-193.7:PASS:370,370,0 chr3 97983257 . C G 1947 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:57:8:35,22:18,10:17,12:-17.7:PASS:173,0,323 chr3 97983391 . C T,G 2501 PASS SNVHPOL=3;MQ=60;AC=1,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:255:222:91:10:53,38,0:33,22,0:20,16,0:-27.7:PASS:256,0,370,370,370,370 chr3 97983487 . TTGTAACCAC T 3070 PASS CIGAR=1M9D;RU=TGTAACCAC;REFREP=2;IDREP=1;MQ=58;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:566:532:100:60,37:37,23:23,14:PASS:563,0,919 chr3 97983561 . G C 2809 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:115:16:70,45:45,36:25,9:-11.5:PASS:268,0,370 chr3 97983711 . T C 2638 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:443:410:161:25:87,74:36,40:51,34:-40.8:PASS:370,0,370 chr3 97983942 . A G 2992 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:394:385:118:22:58,60:20,26:38,34:-46.4:PASS:370,0,370 chr3 97983981 . G A 2159 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:384:384:120:10:57,63:21,22:36,41:-37.8:PASS:370,0,370 chr3 98001777 . G C 618 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:292:259:79:14:41,38:34,29:7,9:-24.2:PASS:294,0,327 chr3 98002419 . A G 594 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:315:282:121:11:70,51:33,22:37,29:-31.1:PASS:317,0,370 chr3 98002587 . A G 909 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:347:346:100:5:48,52:17,20:31,32:-37.4:PASS:370,0,344 chr3 98073591 . TA T 3070 PASS CIGAR=1M1D;RU=A;REFREP=7;IDREP=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:921:921:173:79,80:18,27:61,53:PASS:999,0,918 chr3 98109640 . G A 973 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:376:376:127:7:58,69:26,38:32,31:-48.3:PASS:370,0,370 chr3 98110406 . G GA 3070 PASS CIGAR=1M1I;RU=A;REFREP=7;IDREP=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:660:660:130:61,59:24,16:37,43:PASS:826,0,657 chr3 98188777 . C T 715 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:286:253:139:17:85,54:58,35:27,19:-28.2:PASS:288,0,370 chr3 98217050 . C A 997 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:431:431:167:20:75,92:43,51:32,41:-66.3:PASS:370,0,370 chr3 98251211 . A G 491 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:240:63:14:29,34:20,19:9,15:-32.9:PASS:291,0,237 chr3 98304467 . T C 891 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:437:425:133:34:66,67:23,22:43,45:-38.2:PASS:370,0,370 chr3 98519481 . G A 240 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:33:16:19,14:11,10:8,4:-12.6:PASS:148,0,208 chr3 98541116 . G A 2011 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:163:62:6:36,26:24,15:12,11:-22.6:PASS:198,0,314 chr3 98619997 . G C 174 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:83:82:9:1:3,6:1,1:2,5:-8:PASS:122,0,80 chr3 100084432 . G A 622 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:248:78:9:34,44:22,27:12,17:-36.3:PASS:363,0,245 chr3 100119611 . C A 222 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:2:0,6:0,0:0,6:0:PASS:118,18,0 chr3 100467018 . T C 1999 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:9:0,51:0,39:0,12:-43:PASS:370,153,0 chr3 100473505 . C T 358 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:63:7:39,24:24,10:15,14:-14.2:PASS:183,0,356 chr3 100617680 . C T 186 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:90:57:24:4:16,8:8,7:8,1:-2.2:PASS:92,0,202 chr3 100949842 . G A 362 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:181:148:42:5:24,18:16,10:8,8:-20.4:PASS:183,0,235 chr3 101080694 . T C 2208 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:258:235:61:7:30,31:6,12:24,19:-30.3:PASS:270,0,255 chr3 101085413 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:362:362:114:6:53,61:29,38:24,23:-39:PASS:370,0,359 chr3 101283792 . C G 467 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:347:314:107:20:57,50:27,31:30,19:-27.5:PASS:349,0,370 chr3 101484335 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:7:0,85:0,28:0,57:-85:PASS:370,256,0 chr3 101576175 . T C 2403 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:9:0,44:0,15:0,29:-49.5:PASS:370,132,0 chr3 102176634 . G A 256 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:147:41:6:23,18:18,12:5,6:-19.8:PASS:182,0,232 chr3 102187979 . G A 274 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:39:2:23,16:5,4:18,12:-15.1:PASS:166,0,235 chr3 105260518 . G A 879 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:51:6:31,20:17,10:14,10:-19.3:PASS:169,0,297 chr3 105260596 . T C 2002 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:3:0,43:0,19:0,24:-59.4:PASS:370,129,0 chr3 105389153 . A G 590 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:195:55:9:23,32:10,20:13,12:-25.8:PASS:293,0,192 chr3 105422844 . C T 1028 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:161:40:5:16,24:11,15:5,9:-25.1:PASS:248,0,158 chr3 105438957 . T G 766 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:79:7:46,33:31,22:15,11:-20.5:PASS:225,0,370 chr3 105439026 . G A 828 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:240:207:72:14:40,32:16,10:24,22:-19.3:PASS:242,0,334 chr3 108072298 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:269:269:104:8:1,103:1,78:0,25:-77.5:PASS:370,272,0 chr3 108081247 . G A 773 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:27:27:10:6:0,10:0,5:0,5:-22.9:PASS:200,30,0 chr3 108188993 . G A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:10:0,75:0,32:0,43:-95.2:PASS:370,226,0 chr3 108189627 . C T 1974 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:7:0,46:0,18:0,28:-58.1:PASS:370,138,0 chr3 108373022 . G A 1968 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:3:0,30:0,18:0,12:-42:PASS:370,90,0 chr3 108403086 . T C 1599 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:10:0,25:0,17:0,8:-31.7:PASS:370,75,0 chr3 108475993 . G GGGGGATTA 1982 PASS CIGAR=1M8I;RU=GGGGATTA;REFREP=1;IDREP=2;MQ=58;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:43:43:32:2,26:2,10:0,16:PASS:569,46,0 chr3 108639423 . C T 3013 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:199:199:67:3:0,67:0,23:0,44:-71.3:PASS:370,202,0 chr3 108677821 . C A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:143:143:62:7:1,61:0,39:1,22:-60.2:PASS:370,146,0 chr3 108690221 . G A 1747 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:4:0,31:0,15:0,16:-50:PASS:370,93,0 chr3 108723983 . C T 557 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:253:76:11:33,43:15,29:18,14:-26.5:PASS:370,0,250 chr3 108754214 . T C 2051 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:9:0,52:0,32:0,20:-62.6:PASS:370,156,0 chr3 108754238 . A T 2631 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:8:0,59:0,33:0,26:-78.7:PASS:370,178,0 chr3 108754260 . A G 2264 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:79:79:41:17:0,39:0,19:0,20:-58.4:PASS:370,117,0 chr3 109052732 . T C 1826 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:274:259:68:10:33,35:21,22:12,13:-27.7:PASS:294,0,271 chr3 111356083 . G C 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:701:701:234:22:0,234:0,120:0,114:-309.6:PASS:370,370,0 chr3 111672825 . C T 202 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:20:5:11,9:8,4:3,5:-14:PASS:143,0,160 chr3 111760812 . G C 332 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:186:153:45:4:25,20:11,12:14,8:-17.8:PASS:188,0,237 chr3 111799845 . A T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:274:274:92:17:0,92:0,38:0,54:-110.5:PASS:370,277,0 chr3 111799867 . G A 587 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:300:267:90:9:48,42:18,11:30,31:-19.6:PASS:302,0,364 chr3 111821747 . A G 441 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:174:49:3:27,22:14,11:13,11:-23.5:PASS:208,0,262 chr3 111828423 . G A 2693 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:3:0,53:0,24:0,29:-75:PASS:370,160,0 chr3 111842431 . T C 474 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:227:59:10:27,32:13,19:14,13:-25.5:PASS:277,0,224 chr3 111842539 . C T 444 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:182:47:8:20,27:10,14:10,13:-29.6:PASS:258,0,179 chr3 111887788 . A G 555 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:291:258:74:9:37,37:26,26:11,11:-25.2:PASS:293,0,304 chr3 111887792 . C A 729 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:236:81:7:45,36:32,26:13,10:-22.2:PASS:271,0,357 chr3 111901099 . T C 420 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:194:45:5:21,24:5,8:16,16:-23:PASS:229,0,202 chr3 111918216 . A G 2156 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:304:304:102:19:0,102:0,41:0,61:-115.8:PASS:370,307,0 chr3 111921225 . G T 1407 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:9:0,58:0,22:0,36:-67.6:PASS:370,175,0 chr3 111923123 . G A 1693 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:247:247:83:3:0,83:0,48:0,35:-103.6:PASS:370,250,0 chr3 111981849 . C T 535 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:67:12:44,23:24,12:20,11:-15.9:PASS:143,0,370 chr3 111981878 . T C 553 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:167:134:70:8:45,25:17,9:28,16:-16.1:PASS:168,0,370 chr3 111981924 . T C 593 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:174:69:4:41,28:10,9:31,19:-22.1:PASS:209,0,356 chr3 112063850 . C A 1490 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:21:0,63:0,45:0,18:-59.3:PASS:370,190,0 chr3 112185025 . G A 2855 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:8:0,47:0,34:0,13:-44.5:PASS:370,141,0 chr3 112190137 . G T 2549 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:9:0,42:0,15:0,27:-50.4:PASS:370,126,0 chr3 112253058 . C CA 1749 PASS CIGAR=1M1I;RU=A;REFREP=10;IDREP=11;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:63:63:34:2,30:0,20:2,10:PASS:525,66,0 chr3 112356977 . T C 507 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:261:228:86:21:48,38:22,18:26,20:-28.9:PASS:263,0,370 chr3 112545910 . GT G 3070 PASS CIGAR=1M1D;RU=T;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:602:602:84:42,40:20,23:22,17:PASS:677,0,599 chr3 112642568 . C G 375 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:174:47:6:25,22:13,10:12,12:-21.3:PASS:208,0,241 chr3 112647832 . A C 497 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:251:218:96:8:57,39:35,18:22,21:-21.8:PASS:252,0,370 chr3 112648125 . G T 716 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:400:367:182:14:108,74:62,42:46,32:-42:PASS:370,0,370:112648125 chr3 112648127 . T G 728 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:403:370:181:17:106,75:63,41:43,34:-46:PASS:370,0,370:112648125 chr3 112648222 . T C 618 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:306:273:159:17:98,61:41,26:57,35:-30:PASS:307,0,370 chr3 112718352 . G T 351 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:53:3:30,23:16,11:14,12:-21.5:PASS:201,0,284 chr3 112724619 . A G 575 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:331:298:104:10:56,48:34,30:22,18:-29.9:PASS:333,0,370 chr3 112993367 . G A 251 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:26:10:17,9:10,2:7,7:-5.6:PASS:108,0,197 chr3 112997554 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:472:472:180:56:82,98:53,70:29,28:-42.1:PASS:370,0,370 chr3 112998268 . G A 465 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:196:45:20:21,24:9,9:12,15:-22.1:PASS:235,0,195 chr3 113010466 . T C 692 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:194:76:9:44,32:26,20:18,12:-21.4:PASS:229,0,365 chr3 113022870 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:150:150:51:7:0,51:0,22:0,29:-69:PASS:370,153,0 chr3 113046640 . A G 525 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:231:57:6:27,30:10,2:17,28:-7:PASS:268,0,231 chr3 113176122 . G A 1648 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:262:262:72:13:34,38:11,17:23,21:-35.3:PASS:311,0,259 chr3 113222036 . G A 936 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:159:126:36:17:21,15:12,10:9,5:-15.3:PASS:161,0,211 chr3 113286405 . C T 828 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:152:119:43:3:26,17:14,12:12,5:-10.9:PASS:154,0,258 chr3 113373930 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:206:206:74:8:0,73:0,42:0,31:-92.6:PASS:370,220,0 chr3 113376110 . TTGCTGCTGC TTGCTGC,T 3070 PASS CIGAR=1M3D6M,1M9D;RU=TGC,TGC;REFREP=12,12;IDREP=11,9;MQ=60;AC=1,1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/2:271:271:71:0,22,29:0,8,16:0,14,13:PASS:999,536,430,413,0,290 chr3 113377361 . A G 699 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:262:229:71:9:37,34:16,16:21,18:-30.2:PASS:263,0,305 chr3 113379865 . G C 852 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:232:199:85:18:51,34:34,18:17,16:-22.3:PASS:233,0,370 chr3 113655207 . C T 1221 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:8:0,49:0,27:0,22:-69.2:PASS:370,147,0 chr3 113673125 . A G 1335 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:14:0,57:0,33:0,24:-73.3:PASS:370,172,0 chr3 113858350 . C T 1419 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:7:0,25:0,20:0,5:-24.5:PASS:370,75,0 chr3 113890815 . C T 195 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:99:21:8:9,12:3,1:6,11:-4.5:PASS:134,0,127 chr3 113955164 . T G 2118 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:154:121:74:27:49,25:31,18:18,7:-12.8:PASS:156,0,370 chr3 113955187 . A C 1388 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:170:88:16:55,33:36,25:19,8:-13.4:PASS:205,0,370 chr3 113955265 . G A 2301 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:289:288:79:43:38,41:19,34:19,7:-10.7:PASS:330,0,286 chr3 113955320 . C T 2389 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:265:265:83:51:37,46:24,36:13,10:-19.8:PASS:365,0,262 chr3 118649060 . G T 752 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:51:51:18:10:0,18:0,10:0,8:-31.5:PASS:300,54,0 chr3 118865801 . C T 454 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:316:283:90:28:47,43:28,21:19,22:-32:PASS:317,0,342 chr3 118866376 . C T 2118 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:234:234:91:21:37,54:12,16:25,38:-34.2:PASS:370,0,231 chr3 118867047 . C G 357 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:229:59:4:29,30:20,20:9,10:-24:PASS:264,0,245 chr3 118909159 . A G 1396 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:5:0,32:0,16:0,16:-51.2:PASS:370,96,0 chr3 118945796 . G C 496 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:182:47:6:19,28:11,14:8,14:-30.3:PASS:273,0,179 chr3 119118104 . A G 1662 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:1:0,36:0,13:0,23:-44.4:PASS:370,108,0 chr3 119305379 . T A 758 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:134:45:8:16,29:6,11:10,18:-26:PASS:282,0,131 chr3 119327653 . T C 341 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:146:113:45:8:26,19:19,10:7,9:-14.4:PASS:148,0,254 chr3 119327670 . G A 343 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:45:12:27,18:19,9:8,9:-12.9:PASS:144,0,263 chr3 119367390 . T C 1650 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:15:0,23:0,6:0,17:-26:PASS:353,69,0 chr3 119426307 . T C 2221 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:4:0,44:0,26:0,18:-59.5:PASS:370,132,0 chr3 119434527 . G C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:217:217:73:7:0,73:0,40:0,33:-97.5:PASS:370,220,0 chr3 119533910 . T C 1271 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:75:75:26:11:0,26:0,12:0,14:-42.1:PASS:370,78,0 chr3 119886548 . G C 1061 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:9:0,23:0,12:0,11:-40.7:PASS:355,69,0 chr3 119886776 . T A 1177 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:18:0,30:0,17:0,13:-43.3:PASS:370,90,0 chr3 120389316 . T A 2393 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:172:172:58:5:0,58:0,28:0,30:-84.3:PASS:370,175,0 chr3 121154974 . T C 1250 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:239:239:65:5:30,35:19,28:11,7:-17:PASS:301,0,236 chr3 121208833 . G C 2269 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:384:355:108:9:54,54:25,30:29,24:-37.9:PASS:370,0,370 chr3 121238749 . G A 2505 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:25:0,47:0,30:0,17:-54.3:PASS:370,141,0 chr3 121263720 . C A 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:376:376:126:8:0,126:0,47:0,79:-134.7:PASS:370,370,0 chr3 121304933 . G A 603 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:210:177:52:16:28,24:16,16:12,8:-17.5:PASS:212,0,246 chr3 121350966 . C G 1333 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:8:0,27:0,13:0,14:-44.9:PASS:370,81,0 chr3 121351257 . C T 447 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:178:42:9:20,22:9,9:11,13:-20.9:PASS:213,0,198 chr3 121351315 . G GGGCTCAGGCTCA 412 PASS CIGAR=1M12I;RU=GGCTCA;REFREP=2;IDREP=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:272:252:40:19,17:4,8:15,9:PASS:283,0,269 chr3 121351338 . C T 400 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:116:83:29:6:18,11:5,2:13,9:-7.5:PASS:118,0,208 chr3 121353254 . T C 1622 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:111:111:38:9:0,38:0,17:0,21:-55.9:PASS:370,114,0 chr3 121354583 . G A 103 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:67:14:8:9,5:4,3:5,2:-10.5:PASS:101,0,154 chr3 121363680 . C T 409 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:173:162:34:16:16,18:8,7:8,11:-19.1:PASS:197,0,170 chr3 121414061 . C T 759 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:246:246:64:7:30,34:13,14:17,20:-30.2:PASS:293,0,243 chr3 121415610 . G A 1170 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:319:319:113:12:50,63:31,36:19,27:-50.2:PASS:370,0,316 chr3 121415720 . T C 1113 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:414:381:124:16:63,61:35,28:28,33:-41.1:PASS:370,0,370 chr3 121416623 . G C 1193 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:246:213:110:8:68,42:34,24:34,18:-22.6:PASS:248,0,370 chr3 121435621 . T C 2085 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:2:0,40:0,28:0,12:-43.1:PASS:370,120,0 chr3 121435624 . C T 1988 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:8:0,35:0,26:0,9:-35:PASS:370,105,0 chr3 121507231 . A T 727 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:233:55:13:26,29:12,13:14,16:-28.9:PASS:270,0,233 chr3 121526204 . G A 923 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:175:42:4:21,21:11,10:10,11:-23.4:PASS:209,0,213 chr3 121825197 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:337:337:113:7:0,113:0,57:0,56:-159.2:PASS:370,340,0 chr3 122003045 . G C 2200 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:13:0,41:0,25:0,16:-51.8:PASS:370,123,0 chr3 122003757 . G T 1104 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:429:396:136:46:70,66:20,24:50,42:-43.3:PASS:370,0,370 chr3 122003832 . G C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:337:337:113:21:0,113:0,31:0,82:-92.4:PASS:370,340,0 chr3 122186188 . C T 2524 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:6:0,50:0,32:0,18:-58.5:PASS:370,150,0 chr3 122288210 . G A 1683 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:300:300:87:7:41,46:29,27:12,19:-40:PASS:362,0,297 chr3 122288223 . A G 823 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:285:87:9:43,43:27,31:16,12:-22.7:PASS:319,0,324 chr3 122338637 . G A 397 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:131:26:4:13,13:6,9:7,4:-14:PASS:166,0,166 chr3 122354037 . A G 488 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:125:92:26:7:16,10:4,2:12,8:-11.2:PASS:127,0,209 chr3 122354716 . C T 1171 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:298:265:86:4:46,40:31,31:15,9:-18.9:PASS:300,0,359 chr3 122437321 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:344:344:120:17:0,119:0,61:0,58:-162.2:PASS:370,358,0 chr3 122514097 . G C 112 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:57:24:13:5:8,5:8,5:0,0:0:PASS:58,0,99 chr3 122630346 . T C 376 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:47:47:6:1:2,4:2,3:0,1:-8.7:PASS:100,0,44 chr3 122632436 . A G 285 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:86:86:14:2:4,10:1,9:3,1:-6.6:PASS:148,0,83 chr3 122645277 . C T 239 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:121:89:17:5:9,8:7,5:2,3:-12.4:PASS:123,0,145 chr3 122645304 . G A 238 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:20:4:11,9:9,4:2,5:-13.3:PASS:135,0,158 chr3 122646734 . C T 461 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:78:28:7:19,9:9,7:10,2:-7:PASS:113,0,210 chr3 122646828 . A G 489 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:25:5:14,11:3,3:11,8:-13.4:PASS:139,0,177 chr3 122680141 . A G 662 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:16:4:11,5:1,2:10,3:-10.4:PASS:103,0,156 chr3 122864436 . G A 1419 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:102:102:35:4:0,35:0,9:0,26:-35.5:PASS:370,105,0 chr3 122880191 . T C 1147 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:109:22:2:11,11:9,6:2,5:-15:PASS:143,0,152 chr3 123411589 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:491:491:164:33:0,164:0,103:0,61:-170.3:PASS:370,370,0 chr3 123418913 . G A 829 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:179:146:36:10:19,17:11,12:8,5:-15.7:PASS:181,0,193 chr3 123451773 . G C 1218 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:3:0,19:0,13:0,6:-26.2:PASS:310,57,0 chr3 123452838 . G A 971 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:63:63:22:7:0,22:0,12:0,10:-35.6:PASS:339,66,0 chr3 123457893 . G A 1951 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:107:107:38:9:0,37:0,5:0,32:-25:PASS:370,111,0 chr3 123634046 . G A 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:217:217:73:12:0,73:0,44:0,29:-87.2:PASS:370,220,0 chr3 123665902 . T G 2390 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:323:290:113:16:63,50:26,18:37,32:-27.4:PASS:325,0,370 chr3 124044949 . C T 1877 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:126:126:43:9:0,43:0,17:0,26:-54.8:PASS:370,129,0 chr3 124351316 . G A 710 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:38:6:18,20:15,20:3,0:2.1:PASS:154,0,189 chr3 124351424 . T C 839 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:161:40:15:16,24:6,8:10,16:-23.3:PASS:249,0,158 chr3 124369744 . C T 2516 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:356:323:154:30:90,64:54,37:36,27:-38.6:PASS:357,0,370 chr3 124379817 . T C 719 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:204:188:45:3:22,23:11,8:11,15:-18.7:PASS:223,0,201 chr3 124418879 . T C 562 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:18:10:9,9:3,3:6,6:-11.9:PASS:130,0,147 chr3 124482494 . TTTGTTGAAC T 584 PASS CIGAR=1M9D;RU=TTGTTGAAC;REFREP=1;IDREP=0;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:345:302:48:27,21:12,11:15,10:PASS:342,0,400 chr3 124492734 . T C 493 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:155:35:6:18,17:6,4:12,13:-15.3:PASS:190,0,199 chr3 124627024 . T G 1525 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:5:0,39:0,29:0,10:-37.1:PASS:370,117,0 chr3 124646594 . A G 2914 PASS SNVHPOL=3;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:26:0,68:0,49:0,19:-61.7:PASS:370,205,0 chr3 124646705 . A AAAG 3070 PASS CIGAR=1M3I;RU=AAG;REFREP=1;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:145:145:85:4,70:3,21:1,49:PASS:999,148,0 chr3 124692689 . C T 2096 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:4:0,65:0,26:0,39:-79.3:PASS:370,196,0 chr3 124728626 . A G 2482 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:9:0,53:0,23:0,30:-71.3:PASS:370,160,0 chr3 124731485 . C G 1175 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:195:50:11:22,27:18,23:4,4:-15.4:PASS:257,0,192 chr3 124732618 . A G 1447 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:202:64:8:34,29:11,11:23,18:-23.9:PASS:237,0,291 chr3 124738107 . C T 871 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:30:4:16,14:12,11:4,3:-14.6:PASS:166,0,190 chr3 124739892 . G A 1063 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:191:191:53:10:23,30:7,8:16,22:-21.7:PASS:278,0,188 chr3 124746049 . A G 843 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:129:129:33:3:12,21:10,18:2,3:-14.1:PASS:232,0,126 chr3 124746182 . C A 827 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:165:46:10:24,22:17,16:7,6:-16.4:PASS:200,0,225 chr3 124746347 . T C 984 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:201:53:8:23,30:13,9:10,21:-18.7:PASS:268,0,198 chr3 124748226 . G A 953 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:160:54:18:31,23:14,4:17,19:-8.9:PASS:195,0,284 chr3 124802881 . A G 230 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:75:42:21:4:15,6:4,1:11,5:-5.9:PASS:76,0,191 chr3 124802888 . C T 284 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:84:51:19:6:13,6:4,1:9,5:-5.9:PASS:86,0,183 chr3 124826408 . T C 340 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:139:30:5:15,15:9,9:6,6:-18.1:PASS:174,0,174 chr3 124837684 . T C 770 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:48:48:17:3:0,17:0,7:0,10:-28.9:PASS:289,51,0 chr3 124839470 . G A 913 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:42:42:15:6:0,15:0,11:0,4:-19.9:PASS:261,45,0 chr3 124951821 . C T 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:277:277:93:15:0,93:0,44:0,49:-128:PASS:370,280,0 chr3 125648209 . C T 239 PASS SNVHPOL=3;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:42:42:7:3:2,5:0,3:2,2:-11.5:PASS:115,0,39 chr3 125648283 . A G 252 PASS SNVHPOL=3;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:79:78:9:4:3,6:1,1:2,5:-8:PASS:117,0,76 chr3 125648343 . G A 290 PASS SNVHPOL=2;MQ=55;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:87:12:2:6,6:1,2:5,4:-13.3:PASS:121,0,111 chr3 125649403 . C A 294 PASS SNVHPOL=2;MQ=54;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:144:111:21:6:11,10:5,7:6,3:-13.2:PASS:146,0,160 chr3 125652523 . C T 202 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:115:83:12:6:6,6:3,3:3,3:-13.3:PASS:118,0,119 chr3 125653291 . A G 1385 PASS SNVHPOL=2;MQ=58;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:7:0,23:0,7:0,16:-29.5:PASS:348,69,0 chr3 125725334 . T C 365 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:48:12:27,21:20,8:7,13:-11.3:PASS:184,0,266 chr3 125726048 . G C 1422 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:4:0,31:0,9:0,22:-34.8:PASS:370,93,0 chr3 125775228 . T C 1077 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:6:0,21:0,15:0,6:-24.5:PASS:323,63,0 chr3 125786879 . T C 2222 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:15:0,40:0,23:0,17:-56.6:PASS:370,120,0 chr3 125826003 . T C 239 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:108:19:6:10,9:6,4:4,5:-15.3:PASS:142,0,144 chr3 125826059 . T C 789 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:135:24:2:10,13:6,6:4,7:-19.3:PASS:183,0,132 chr3 125872384 . A G 408 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:157:32:5:15,17:4,9:11,8:-18.5:PASS:192,0,166 chr3 126137456 . T C 238 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:127:26:6:13,13:11,4:2,9:-10.1:PASS:162,0,158 chr3 126180705 . G A 498 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:48:7:25,23:7,9:18,14:-23.5:PASS:213,0,237 chr3 126194076 . T C 1100 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:123:20:11:9,11:4,3:5,8:-13:PASS:160,0,123 chr3 126218211 . G A 235 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:130:97:30:6:19,11:7,6:12,5:-11.8:PASS:131,0,217 chr3 126219627 . G A 2209 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:266:266:103:55:1,102:0,22:1,80:-64.6:PASS:370,269,0 chr3 126261202 . G A 72 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:35:31:3:1:1,2:1,1:0,1:-7.1:PASS:69,0,32 chr3 126270923 . G C 308 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:39:8:22,16:7,6:15,10:-17.3:PASS:163,0,215 chr3 126291352 . G A 242 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:96:63:23:7:15,8:4,1:11,7:-5:PASS:97,0,179 chr3 126329910 . A G 1591 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:2:0,31:0,17:0,14:-48.3:PASS:370,93,0 chr3 126362849 . G A 349 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:150:58:11:35,23:26,12:9,11:-15.4:PASS:185,0,318 chr3 126451937 . G T 609 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:113:84:15:5:7,8:6,7:1,1:-7.1:PASS:119,0,112 chr3 126708375 . G A 223 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:40:10:22,18:11,10:11,8:-17.1:PASS:169,0,221 chr3 126708453 . T C 1610 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:11:0,39:0,15:0,24:-49.5:PASS:370,117,0 chr3 126708459 . C T 1024 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:156:156:37:13:15,22:7,8:8,14:-22.2:PASS:241,0,153 chr3 126722304 . C T 295 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:114:82:12:3:6,6:2,2:4,4:-10.4:PASS:117,0,120 chr3 126723974 . C T 162 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:89:28:7:18,10:6,4:12,6:-13.8:PASS:124,0,212 chr3 127318358 . T G 102 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:72:39:27:8:19,7:3,1:16,6:-6.6:PASS:74,0,219 chr3 127323830 . C T 846 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:27:22:10:18,4:6,2:12,2:-5.6:PASS:61,0,236 chr3 127379270 . C T 468 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:162:129:35:11:20,15:14,10:6,5:-16.6:PASS:164,0,209 chr3 127395817 . G A 382 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:61:61:13:8:3,10:2,5:1,5:-17.5:PASS:164,0,58 chr3 127413881 . T C 321 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:133:100:26:7:15,11:8,6:7,5:-14.8:PASS:135,0,186 chr3 127983495 . T C 1868 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:10:0,33:0,18:0,15:-50.1:PASS:370,99,0 chr3 128181777 . A G 1419 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:169:169:57:8:0,57:0,29:0,28:-84:PASS:370,172,0 chr3 128204951 . C T 304 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:138:32:19:17,15:9,10:8,5:-15.5:PASS:172,0,179 chr3 128205860 . G C 552 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:24:24:9:2:0,9:0,2:0,7:-15.3:PASS:195,27,0 chr3 128344786 . G A 539 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:196:48:4:21,27:11,10:10,17:-23.2:PASS:259,0,193 chr3 128356852 . C T 1204 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:186:67:5:38,29:17,15:21,14:-23.1:PASS:221,0,321 chr3 128525253 . C T 551 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:212:204:49:5:23,26:16,18:7,8:-21.5:PASS:240,0,209 chr3 128614185 . A C 865 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:36:36:13:7:0,13:0,8:0,5:-22.9:PASS:236,39,0 chr3 128890350 . G A 2726 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:10:0,81:0,42:0,39:-111.8:PASS:370,244,0 chr3 129270029 . A G 274 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:157:124:34:10:19,15:9,11:10,4:-10.7:PASS:159,0,199 chr3 129270117 . T G 229 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:111:111:30:10:13,17:0,7:13,10:-18.6:PASS:174,0,108 chr3 129270132 . G A 175 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:91:30:10:17,13:5,2:12,11:-7.1:PASS:126,0,191 chr3 129275206 . C T 575 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:85:26:1:17,9:9,6:8,3:-10.3:PASS:119,0,213 chr3 129281980 . C T 1370 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:10:0,28:0,10:0,18:-36.7:PASS:370,84,0 chr3 129290640 . G A 176 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:100:16:4:8,8:1,3:7,5:-15.3:PASS:135,0,115 chr3 129291751 . T C 201 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:131:98:14:4:7,7:4,3:3,4:-14.6:PASS:133,0,136 chr3 129293183 . T C 454 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:15:15:6:0:0,6:0,4:0,2:-15.3:PASS:160,18,0 chr3 129293256 . T C 146 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:60:60:8:2:2,6:1,4:1,2:-13.3:PASS:139,0,57 chr3 129308209 . G A 336 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:103:20:9:10,10:5,6:5,4:-12.7:PASS:138,0,141 chr3 129546729 . T C 1631 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:18:0,29:0,19:0,10:-36.8:PASS:370,87,0 chr3 129694681 . C G 726 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:3:0,14:0,10:0,4:-20.1:PASS:243,42,0 chr3 129696041 . A G 931 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:54:54:19:4:0,19:0,6:0,13:-27.7:PASS:316,57,0 chr3 129810128 . G A 261 PASS SNVHPOL=3;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:124:26:4:12,14:11,11:1,3:-15.8:PASS:181,0,121 chr3 129810158 . C T 276 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:127:25:7:11,14:10,11:1,3:-14.9:PASS:173,0,125 chr3 129813301 . G A 1549 PASS SNVHPOL=2;MQ=55;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:14:0,25:0,8:0,17:-29.2:PASS:370,75,0 chr3 129814934 . GC G 1846 PASS CIGAR=1M1D;RU=C;REFREP=2;IDREP=1;MQ=59;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:66:66:24:0,23:0,11:0,12:PASS:518,69,0 chr3 130116696 . A C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:187:187:63:16:0,63:0,31:0,32:-92.1:PASS:370,190,0 chr3 130124491 . G A 1692 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:12:0,32:0,13:0,19:-46.2:PASS:370,96,0 chr3 130124989 . C T 2155 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:9:0,50:0,30:0,20:-63.3:PASS:370,150,0 chr3 130125116 . G C 1870 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:4:0,50:0,14:0,36:-46.6:PASS:370,150,0 chr3 130134492 . T C 2001 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:7:0,34:0,18:0,16:-52.4:PASS:370,102,0 chr3 130162395 . A G 1277 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:60:60:21:1:0,21:0,10:0,11:-35.4:PASS:328,63,0 chr3 130174334 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:277:277:93:9:0,93:0,60:0,33:-98.9:PASS:370,280,0 chr3 130187817 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:14:0,75:0,45:0,30:-88.8:PASS:370,226,0 chr3 130190630 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:6:0,74:0,34:0,40:-101:PASS:370,223,0 chr3 130190720 . AT A 3070 PASS CIGAR=1M1D;RU=T;REFREP=3;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:128:128:53:1,49:0,16:1,33:PASS:999,131,0 chr3 130284284 . G A 2403 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:18:0,46:0,9:0,37:-32.2:PASS:370,138,0 chr3 130300650 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:234:234:91:12:1,90:0,43:1,47:-123.6:PASS:370,237,0 chr3 130368069 . A G 499 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:161:46:19:25,21:8,13:17,8:-13.7:PASS:196,0,239 chr3 130449222 . A G 550 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:168:63:8:37,26:15,10:22,16:-20.1:PASS:203,0,328 chr3 130947435 . A T 1777 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:5:0,27:0,14:0,13:-45.8:PASS:370,81,0 chr3 132218623 . G T 1236 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:2:0,41:0,24:0,17:-55.8:PASS:370,123,0 chr3 132221139 . C T 491 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:205:53:27:26,27:19,22:7,5:-13.9:PASS:240,0,218 chr3 132358386 . A C 542 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:196:49:8:24,25:15,14:9,11:-25.4:PASS:231,0,228 chr3 132360883 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:6:0,62:0,26:0,36:-79.4:PASS:370,187,0 chr3 132405212 . C T 468 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:54:8:31,23:12,6:19,17:-14:PASS:197,0,280 chr3 133098806 . C T 358 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:160:129:28:7:14,14:7,3:7,11:-12.1:PASS:163,0,163 chr3 133099245 . G A 1310 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:186:46:9:23,23:14,14:9,9:-22.3:PASS:220,0,223 chr3 133167363 . G A 1021 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:108:108:37:3:0,37:0,21:0,16:-54.3:PASS:370,111,0 chr3 133327457 . T C 513 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:242:242:71:5:31,40:17,22:14,18:-35:PASS:326,0,239 chr3 133329943 . G A 2837 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:10:0,52:0,24:0,28:-73.6:PASS:370,156,0 chr3 133356790 . G A 733 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:300:300:84:16:40,44:30,31:10,13:-28.9:PASS:350,0,297 chr3 133362154 . A G 657 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:190:53:8:27,26:12,17:15,9:-17:PASS:225,0,247 chr3 133368362 . T G 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:7:0,72:0,49:0,23:-70.1:PASS:370,217,0 chr3 133475722 . C T 816 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:45:5:26,19:18,12:8,7:-16.4:PASS:169,0,254 chr3 133478077 . C T 642 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:149:149:40:14:15,25:10,13:5,12:-29.1:PASS:255,0,146 chr3 133485133 . A G 1512 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:78:78:27:1:0,27:0,14:0,13:-45.5:PASS:370,81,0 chr3 133486958 . G C 477 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:45:3:24,21:9,9:15,12:-21.1:PASS:192,0,232 chr3 133647387 . G C 313 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:118:18:2:7,11:2,5:5,6:-19.8:PASS:173,0,115 chr3 134077470 . C G 1379 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:10:0,23:0,10:0,13:-37.2:PASS:353,69,0 chr3 134322742 . A G 1557 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:65:12:40,25:13,9:27,16:-18.6:PASS:186,0,352 chr3 134322814 . G C 548 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:187:53:6:28,25:9,8:19,17:-20:PASS:221,0,252 chr3 134323156 . A G 1389 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:3:0,28:0,14:0,14:-45.6:PASS:370,84,0 chr3 134670524 . C T 581 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:237:204:72:10:40,32:22,21:18,11:-19.7:PASS:239,0,330 chr3 134851605 . C T 335 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:92:59:28:7:19,9:14,8:5,1:-5.2:PASS:94,0,229 chr3 135720851 . G T 511 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:266:233:80:10:44,36:21,19:23,17:-28.9:PASS:268,0,353 chr3 136088038 . G A 776 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:280:247:72:7:37,35:18,9:19,26:-17:PASS:282,0,298 chr3 136573440 . A G 1326 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:302:269:93:19:49,44:23,31:26,13:-15.9:PASS:304,0,370 chr3 136574501 . A G 1833 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:416:383:121:16:60,61:23,27:37,34:-47.1:PASS:370,0,370 chr3 137787047 . C T 167 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:92:92:19:11:7,12:5,11:2,1:-6.4:PASS:157,0,89 chr3 137787055 . G A 179 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:95:62:22:9:16,6:14,4:2,2:-9.8:PASS:97,0,199 chr3 137787192 . T C 259 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:124:124:29:6:11,18:4,3:7,15:-12.9:PASS:211,0,121 chr3 137843476 . G T 1708 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:12:0,76:0,49:0,27:-81.2:PASS:370,229,0 chr3 137850003 . A G 1001 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:13:0,41:0,18:0,23:-58:PASS:370,123,0 chr3 137880743 . G A 2336 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:8:0,47:0,39:0,8:-32.4:PASS:370,141,0 chr3 137881265 . T A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:204:204:81:8:1,80:0,38:1,42:-110.5:PASS:370,207,0 chr3 138033181 . C T 1833 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:8:0,36:0,25:0,11:-41.1:PASS:370,108,0 chr3 138191246 . A G 446 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:54:14:29,25:15,12:14,13:-23.4:PASS:210,0,265 chr3 138191448 . A T 581 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:208:52:23:25,27:14,15:11,12:-26.4:PASS:243,0,213 chr3 138218994 . T C 1248 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:143:143:62:2:1,61:1,28:0,33:-75.6:PASS:370,146,0 chr3 138289221 . C T 2780 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:54:7:0,54:0,35:0,19:-60.8:PASS:370,163,0 chr3 138329862 . G A 1586 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:90:90:31:1:0,31:0,12:0,19:-43:PASS:370,93,0 chr3 138347957 . G A 808 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:99:99:34:0:0,34:0,18:0,16:-52.2:PASS:370,102,0 chr3 138347988 . T C 775 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:87:87:30:4:0,30:0,14:0,16:-47.4:PASS:370,90,0 chr3 138664803 . C T 96 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:70:56:9:2:5,4:5,3:0,1:-8.7:PASS:91,0,67 chr3 138665029 . G C,A 286 PASS SNVHPOL=6;MQ=60;AC=1,0;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:118:91:16:3:8,8,0:7,5,0:1,3,0:-13.8:PASS:126,0,116,150,140,290 chr3 138666277 . A G 61 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:32:32:4:2:1,3:0,2:1,1:-8:PASS:93,0,29 chr3 138669222 . A G 356 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:178:150:33:7:17,16:9,11:8,5:-16:PASS:185,0,177 chr3 138724757 . C G 1524 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:81:81:28:4:0,28:0,14:0,14:-46.6:PASS:370,84,0 chr3 139297857 . G A 280 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:127:94:19:6:11,8:3,3:8,5:-13.7:PASS:129,0,158 chr3 140167536 . A G 551 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:206:173:62:6:35,27:8,6:27,21:-15.3:PASS:208,0,312 chr3 140178485 . G A 302 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:202:169:46:7:24,22:16,12:8,10:-22.8:PASS:204,0,229 chr3 140281723 . C T 887 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:157:32:5:15,17:9,11:6,6:-18.4:PASS:192,0,168 chr3 140282861 . C T 721 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:145:29:4:12,17:7,9:5,8:-22.8:PASS:202,0,142 chr3 140401693 . A G 2039 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:7:0,42:0,22:0,20:-63.7:PASS:370,126,0 chr3 140406947 . G A 526 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:221:188:52:22:27,25:16,13:11,12:-24.9:PASS:223,0,244 chr3 140407260 . C A 608 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:196:66:13:37,29:16,7:21,22:-13.1:PASS:231,0,316 chr3 141162128 . C G 633 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:314:281:112:16:63,49:39,30:24,19:-30.7:PASS:316,0,370 chr3 141162185 . T G 571 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:273:240:103:13:60,43:37,22:23,21:-27.4:PASS:274,0,370 chr3 141326602 . T C 296 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:137:104:39:2:25,14:15,9:10,5:-14.6:PASS:139,0,265 chr3 141327474 . G A 377 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:239:206:80:8:46,34:14,15:32,19:-25.8:PASS:241,0,370 chr3 142168331 . C T 676 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:244:211:66:9:36,30:22,14:14,16:-24.2:PASS:246,0,305 chr3 142408606 . G A 1127 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:69:2:40,29:17,9:23,20:-17.1:PASS:216,0,339 chr3 143371201 . C T 225 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:23:1:13,10:3,3:10,7:-15.2:PASS:143,0,170 chr3 145794599 . A G 768 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:321:288:109:9:61,48:41,32:20,16:-28.3:PASS:323,0,370 chr3 145803017 . C G 1103 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:350:317:107:14:56,51:35,20:21,31:-24.8:PASS:352,0,370 chr3 145912991 . C T 501 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:182:42:8:21,21:10,9:11,12:-22.5:PASS:217,0,211 chr3 145917761 . T C 465 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:60:4:31,29:17,13:14,16:-23.7:PASS:247,0,269 chr3 145938619 . T C 408 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:210:49:5:23,26:16,18:7,8:-21.4:PASS:247,0,212 chr3 146177815 . C T 1467 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:13:0,42:0,16:0,26:-51.3:PASS:370,126,0 chr3 146234853 . C T 636 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:347:314:118:11:65,53:35,32:30,21:-31.8:PASS:349,0,370 chr3 148459120 . C T 1159 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:348:348:104:13:49,55:23,27:26,28:-47.3:PASS:370,0,345 chr3 148459884 . A G 935 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:374:342:103:12:52,51:7,10:45,41:-25.5:PASS:370,0,370 chr3 148597612 . C T 1951 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:72:72:25:5:0,25:0,14:0,11:-39.8:PASS:370,75,0 chr3 148603920 . G A 542 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:145:36:4:14,22:5,11:9,11:-26.1:PASS:243,0,142 chr3 148727133 . G A 1759 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:589:556:188:17:95,93:38,42:57,51:-65.6:PASS:370,0,370 chr3 148759325 . T C 671 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:178:61:12:35,26:25,20:10,6:-16.1:PASS:213,0,305 chr3 148786108 . C T 2451 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:153:153:52:8:0,52:0,16:0,36:-50.7:PASS:370,156,0 chr3 148872987 . G A 1386 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:227:76:10:42,34:14,8:28,26:-17.6:PASS:261,0,344 chr3 148916235 . T A 2495 PASS SNVHPOL=4;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:6:0,60:0,30:0,30:-89.8:PASS:370,181,0 chr3 148924064 . G A 581 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:199:166:58:9:33,25:16,5:17,20:-9.3:PASS:201,0,291 chr3 149093238 . A G 2766 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:9:0,60:0,40:0,20:-63.7:PASS:370,181,0 chr3 149374873 . G T 241 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:135:102:26:7:15,11:7,4:8,7:-13:PASS:137,0,177 chr3 149459341 . A G 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:188:188:77:12:1,76:0,57:1,19:-52.1:PASS:370,191,0 chr3 149468530 . T G 1249 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:229:201:51:7:25,26:10,16:15,10:-19.7:PASS:235,0,228 chr3 149479301 . C T 980 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:155:44:1:24,20:14,8:10,12:-17:PASS:190,0,241 chr3 149485293 . T C 1711 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:317:284:85:15:43,42:27,23:16,19:-36.5:PASS:318,0,333 chr3 149488442 . A G 2410 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:9:0,36:0,10:0,26:-37.2:PASS:370,108,0 chr3 149678534 . C T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:226:226:76:7:0,76:0,63:0,13:-45.6:PASS:370,229,0 chr3 150128392 . G A 135 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:80:76:8:4:3,5:1,4:2,1:-7.3:PASS:112,0,77 chr3 150280445 . C G 480 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:149:54:5:32,22:12,7:20,15:-16.3:PASS:184,0,299 chr3 150391810 . A C 296 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:40:6:21,19:14,7:7,12:-14.6:PASS:192,0,219 chr3 150421419 . G A 136 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:83:50:21:6:16,5:10,3:6,2:-9.2:PASS:85,0,206 chr3 150911405 . T C 783 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:309:276:80:10:40,40:19,23:21,17:-30.1:PASS:311,0,316 chr3 150917000 . T G 1079 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:297:297:113:24:48,65:22,26:26,39:-46.6:PASS:370,0,294 chr3 150931385 . A G 1167 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:407:374:125:18:64,61:22,29:42,32:-42.2:PASS:370,0,370 chr3 150932000 . T C 568 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:202:60:6:32,28:12,12:20,16:-25.9:PASS:237,0,283 chr3 151011969 . G A 2248 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:5:0,56:0,44:0,12:-42.6:PASS:370,169,0 chr3 151012497 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:265:265:89:18:0,89:0,48:0,41:-117.3:PASS:370,268,0 chr3 151046308 . G A 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:391:391:131:14:0,131:0,49:0,82:-140.3:PASS:370,370,0 chr3 151056598 . A C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:178:178:60:19:0,60:0,19:0,41:-59.4:PASS:370,181,0 chr3 151082923 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:214:214:72:13:0,72:0,20:0,52:-63.8:PASS:370,217,0 chr3 151112568 . G A 345 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:118:24:10:12,12:8,4:4,8:-12.4:PASS:153,0,157 chr3 151131077 . C T 420 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:103:70:16:5:9,7:3,1:6,6:-6.6:PASS:104,0,150 chr3 151154666 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:59:14:0,58:0,35:0,23:-71.4:PASS:370,175,0 chr3 151155620 . G A 3070 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:388:388:130:19:0,130:0,69:0,61:-172.2:PASS:370,370,0 chr3 151156343 . A C 355 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:223:223:58:5:27,31:8,13:19,18:-30.1:PASS:274,0,220 chr3 151165678 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:313:313:105:13:0,105:0,58:0,47:-134.7:PASS:370,316,0 chr3 151166422 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:259:259:87:13:0,87:0,47:0,40:-117.9:PASS:370,262,0 chr3 151171439 . A C 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:307:307:103:15:0,103:0,50:0,53:-139.7:PASS:370,310,0 chr3 151171542 . A G 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:340:340:114:7:0,114:0,29:0,85:-87.4:PASS:370,343,0 chr3 151545601 . G A 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:321:321:109:17:0,108:0,52:0,56:-147.3:PASS:370,325,0 chr3 152554357 . A G 767 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:326:326:104:17:47,57:27,35:20,22:-39.9:PASS:370,0,323 chr3 153839866 . G C 1364 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:158:157:33:4:15,18:7,12:8,6:-17:PASS:202,0,155 chr3 153839960 . T C 1079 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0/1:151:118:29:11:16,13:8,5:8,8:-15:PASS:152,0,185:. chr3 154018887 . G C 1234 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:184:57:11:22,35:9,7:13,28:-19:PASS:329,0,181 chr3 155241740 . A G 1356 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:8:0,47:0,27:0,20:-62.8:PASS:370,141,0 chr3 155314034 . A G 1112 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:187:154:54:18:31,23:24,15:7,8:-20.1:PASS:189,0,292 chr3 155481609 . G A 2499 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:388:355:119:12:62,57:21,20:41,37:-34:PASS:370,0,370 chr3 155485302 . C T 2854 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:11:0,54:0,41:0,13:-45.3:PASS:370,163,0 chr3 156570703 . A G 1537 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:227:70:15:36,34:10,10:26,24:-23.2:PASS:262,0,292 chr3 156763279 . C T 417 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:73:14:49,24:28,14:21,10:-15.3:PASS:142,0,370 chr3 158320597 . T C 293 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:34:5:20,14:15,9:5,5:-15.2:PASS:143,0,229 chr3 158362441 . T C 303 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:69:69:25:15:8,17:8,15:0,2:-14:PASS:210,0,66 chr3 158366900 . G A 433 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:209:176:66:10:39,27:15,8:24,19:-16.7:PASS:211,0,343 chr3 158388780 . T C 522 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:222:222:65:7:28,37:17,26:11,11:-25.8:PASS:333,0,219 chr3 158538056 . T C 345 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:255:222:87:13:50,37:24,20:26,17:-25.4:PASS:257,0,370 chr3 161221705 . A C 2961 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:21:0,69:0,35:0,34:-99.4:PASS:370,208,0 chr3 164714532 . C T 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:837:837:279:21:0,279:0,125:0,154:-342.5:PASS:370,370,0 chr3 164785196 . C T 2335 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:319:319:107:12:0,107:0,65:0,42:-120.2:PASS:370,322,0 chr3 164906320 . A T 679 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:239:208:57:20:29,28:11,12:18,16:-26.8:PASS:243,0,240 chr3 164906806 . T C 697 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:242:242:64:7:30,34:16,19:14,15:-30.5:PASS:291,0,239 chr3 165548010 . G A 1126 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:378:349:105:9:52,53:26,18:26,35:-29:PASS:370,0,370 chr3 167023738 . G C 2717 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:268:268:90:12:0,90:0,33:0,57:-96.5:PASS:370,271,0 chr3 167034814 . T C 1648 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:166:166:56:8:0,56:0,32:0,24:-74.9:PASS:370,169,0 chr3 167051769 . T C 2280 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:205:205:69:13:0,69:0,23:0,46:-71.6:PASS:370,208,0 chr3 167068256 . T A 1865 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:175:175:59:5:0,59:0,21:0,38:-66.4:PASS:370,178,0 chr3 167077691 . T A 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:202:202:68:8:0,68:0,40:0,28:-84.7:PASS:370,205,0 chr3 169539812 . C G 493 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:211:76:8:31,44:16,26:15,18:-34.9:PASS:370,0,208 chr3 169539990 . G A 429 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:188:188:55:22:23,32:9,15:14,17:-32.7:PASS:287,0,185 chr3 169540397 . T C 461 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:220:187:74:23:43,31:12,17:31,14:-16:PASS:222,0,370 chr3 169557842 . C T 441 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:224:76:7:42,34:29,24:13,10:-21.1:PASS:258,0,347 chr3 169558025 . C T 550 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:282:282:80:14:39,41:21,20:18,21:-35.3:PASS:326,0,279 chr3 169569432 . C G 445 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:244:216:59:9:30,29:17,19:13,10:-20.8:PASS:250,0,242 chr3 169988286 . C T 544 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:194:52:20:22,30:13,17:9,13:-31.2:PASS:290,0,191 chr3 170078232 . C T 2584 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:11:0,48:0,27:0,21:-66.8:PASS:370,144,0 chr3 170715830 . G A 432 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:200:75:10:43,32:15,8:28,24:-16.9:PASS:235,0,364 chr3 170825905 . C G 2324 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:114:114:39:12:0,39:0,16:0,23:-50.9:PASS:370,117,0 chr3 170825920 . G A 125 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:93:60:35:10:23,12:9,2:14,10:-4.8:PASS:95,0,232 chr3 170893070 . G A 1638 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:53:8:32,21:12,9:20,12:-18.5:PASS:171,0,302 chr3 171087469 . G A 550 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:241:218:55:5:27,28:11,10:16,18:-22.5:PASS:253,0,238 chr3 171338237 . T G 364 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:172:39:1:19,20:11,7:8,13:-17:PASS:207,0,195 chr3 171395468 . A G 430 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:184:50:13:26,24:7,7:19,17:-20.4:PASS:219,0,237 chr3 171969077 . C G 1413 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:269:258:70:10:34,36:21,26:13,10:-20.4:PASS:293,0,266 chr3 172046861 . T C 1297 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:168:39:7:17,22:8,16:9,6:-16.3:PASS:230,0,165 chr3 172224303 . A G 3070 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:352:352:118:15:0,118:0,97:0,21:-64.4:PASS:370,355,0 chr3 172365832 . T G 861 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:47:6:24,23:12,7:12,16:-16:PASS:218,0,226 chr3 172428782 . T C 581 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:150:117:40:9:24,16:12,9:12,7:-14.7:PASS:152,0,242 chr3 173997153 . G A 2343 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:406:390:121:11:59,61:33,32:26,29:-48.6:PASS:370,0,370 chr3 174814738 . G A 2542 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:10:0,81:0,38:0,43:-111.5:PASS:370,244,0 chr3 174814920 . A G 2803 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:328:328:110:19:0,110:0,58:0,52:-149.2:PASS:370,331,0 chr3 174951756 . T C 2429 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:235:235:79:5:0,79:0,63:0,16:-51:PASS:370,238,0 chr3 175165079 . C T 2782 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:160:160:54:4:0,54:0,24:0,30:-74.7:PASS:370,163,0 chr3 175189447 . G A 2807 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:289:289:97:10:0,97:0,64:0,33:-99.3:PASS:370,292,0 chr3 175345143 . C G 1247 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:89:89:44:3:1,43:0,21:1,22:-59.9:PASS:370,92,0 chr3 175473047 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:193:193:65:11:0,65:0,44:0,21:-66.5:PASS:370,196,0 chr3 178546026 . T C 2352 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:5:0,48:0,28:0,20:-62.1:PASS:370,144,0 chr3 178560581 . A C 3070 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:262:262:88:13:0,88:0,46:0,42:-122.5:PASS:370,265,0 chr3 178927410 . A G 619 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:182:51:6:27,24:16,12:11,12:-23:PASS:217,0,248 chr3 178960766 . CT C 1615 PASS CIGAR=1M1D;RU=T;REFREP=4;IDREP=3;MQ=55;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:359:359:68:28,32:15,17:13,15:PASS:510,0,356 chr3 179082937 . G A 467 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:160:31:5:14,17:11,9:3,8:-20.5:PASS:197,0,160 chr3 179096508 . C G 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:302:302:105:25:0,104:0,45:0,59:-128.5:PASS:370,313,0 chr3 179137273 . A G 1263 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:246:213:65:5:34,31:13,13:21,18:-26.8:PASS:247,0,288 chr3 179298999 . C T 582 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:300:300:91:13:42,49:15,21:27,28:-41.5:PASS:370,0,297 chr3 180334623 . C T 1768 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:261:228:102:8:61,41:34,18:27,23:-22.7:PASS:263,0,370 chr3 180365956 . G A 976 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:193:160:44:13:24,20:17,15:7,5:-16.6:PASS:194,0,244 chr3 182614493 . T C 530 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:208:183:44:5:21,23:13,14:8,9:-21.8:PASS:218,0,206 chr3 182681740 . C T 2804 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:220:220:74:10:0,74:0,45:0,29:-86.2:PASS:370,223,0 chr3 182755209 . T G 1646 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:132:132:45:6:0,45:0,15:0,30:-50.9:PASS:370,135,0 chr3 182790249 . G A 1715 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:6:0,36:0,15:0,21:-50.5:PASS:370,108,0 chr3 182853670 . T C 518 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:147:147:31:6:12,19:4,1:8,18:-5.9:PASS:205,0,144 chr3 182871962 . C T 849 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:389:388:117:25:57,60:28,32:29,28:-45.9:PASS:370,0,370 chr3 182925404 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:9:0,62:0,47:0,15:-50.1:PASS:370,187,0 chr3 183211906 . A G 1501 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:260:227:73:12:39,34:26,23:13,11:-21.7:PASS:262,0,317 chr3 183476685 . G A 772 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:208:175:58:8:31,26:17,12:14,14:-21.2:PASS:210,0,284 chr3 183493743 . CGGA C 1044 PASS CIGAR=1M3D;RU=GGA;REFREP=9;IDREP=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:149:149:34:11,14:8,9:3,5:PASS:248,0,146 chr3 183558402 . C G 1052 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:226:226:56:7:26,30:19,12:7,18:-21.9:PASS:274,0,223 chr3 183560195 . A G 1107 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:216:183:52:2:28,24:5,6:23,18:-20:PASS:218,0,261 chr3 183685534 . A G 1430 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:190:157:54:9:31,23:15,13:16,10:-19.5:PASS:192,0,284 chr3 183696402 . A G 993 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:128:95:29:11:18,11:9,2:9,9:-7.7:PASS:130,0,206 chr3 183699516 . T C 443 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:167:31:3:14,17:6,12:8,5:-16:PASS:203,0,169 chr3 183754278 . C G 658 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:202:66:22:34,32:17,9:17,23:-12.5:PASS:237,0,271 chr3 183754294 . G C 1964 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:217:184:66:20:35,31:13,11:22,20:-19.4:PASS:218,0,297 chr3 183755822 . G A 941 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:145:112:33:14:19,14:12,11:7,3:-11:PASS:147,0,212 chr3 183755964 . C T 569 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:211:211:66:7:28,38:11,20:17,18:-33.6:PASS:331,0,208 chr3 183756702 . G A 1185 PASS SNVHPOL=5;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:64:31:54:12:38,16:14,0:24,16:9.7:PASS:65,0,370 chr3 183756742 . C T 531 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:101:68:59:8:42,17:15,4:27,13:-5.9:PASS:103,0,370 chr3 183774762 . C A 480 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:233:233:71:8:30,41:13,17:17,24:-35.1:PASS:355,0,230 chr3 183778010 . G C 350 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:184:151:45:18:25,20:9,9:16,11:-20:PASS:186,0,239 chr3 183818416 . G A 1995 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:20:0,46:0,16:0,30:-52.1:PASS:370,138,0 chr3 183823576 . T C 2113 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:93:93:32:12:0,32:0,17:0,15:-50.9:PASS:370,96,0 chr3 183855449 . G A 334 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:139:62:3:39,23:28,17:11,6:-14.2:PASS:174,0,340 chr3 183901281 . G A 950 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:33:7:17,16:9,12:8,4:-11.5:PASS:164,0,192 chr3 183951135 . C T 976 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:72:39:27:17:20,7:7,4:13,3:-5.4:PASS:74,0,234 chr3 183951431 . C T 795 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:110:110:18:9:7,11:2,3:5,8:-15.6:PASS:168,0,107 chr3 183953972 . G A 925 PASS SNVHPOL=8;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:105:72:26:14:17,9:9,3:8,6:-8.7:PASS:107,0,204 chr3 183955109 . C T 858 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:140:113:19:9:9,10:6,4:3,6:-12.6:PASS:148,0,139 chr3 183959508 . A C 664 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:96:96:15:5:6,9:1,6:5,3:-13.9:PASS:155,0,93 chr3 183975365 . C T 2035 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:105:105:36:11:0,36:0,23:0,13:-43.4:PASS:370,108,0 chr3 183976108 . T C 1084 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:112:27:5:9,18:7,10:2,8:-23.2:PASS:207,0,109 chr3 183976241 . A G 1043 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:122:121:21:13:8,13:6,6:2,7:-17.4:PASS:168,0,119 chr3 183996068 . C T 382 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:194:194:48:9:21,27:12,15:9,12:-27.6:PASS:261,0,191 chr3 184037533 . A G 1090 PASS SNVHPOL=10;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:57:57:20:7:0,20:0,4:0,16:-20.8:PASS:315,60,0 chr3 184046470 . C T 1708 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:194:58:11:31,27:18,16:13,11:-23.1:PASS:229,0,272 chr3 184071063 . G C 1384 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:112:79:38:6:27,11:20,8:7,3:-12.5:PASS:113,0,292 chr3 184075047 . A G 513 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:264:231:68:12:35,33:22,22:13,11:-23:PASS:266,0,292 chr3 184094183 . A G 1202 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:183:150:42:7:23,19:4,6:19,13:-19.8:PASS:185,0,226 chr3 184099378 . C A 629 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:161:128:29:12:16,13:8,9:8,4:-14:PASS:163,0,183 chr3 184290348 . G A 392 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:235:202:70:13:39,31:28,23:11,8:-18.2:PASS:237,0,330 chr3 184293769 . T C 1240 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:163:163:55:9:0,55:0,12:0,43:-42.2:PASS:370,166,0 chr3 184297617 . T C 613 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:219:219:56:17:26,30:12,15:14,15:-30.5:PASS:273,0,216 chr3 184298663 . G A 391 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:211:51:9:24,27:11,11:13,16:-25:PASS:248,0,211 chr3 184299167 . T C 1467 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:18:0,62:0,27:0,35:-80.5:PASS:370,187,0 chr3 184428903 . T G 3038 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:138:138:47:14:0,47:0,28:0,19:-61:PASS:370,141,0 chr3 184429414 . C A 1543 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:66:66:23:13:0,23:0,8:0,15:-31.3:PASS:360,69,0 chr3 184633247 . A C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:211:211:71:6:0,71:0,25:0,46:-76.8:PASS:370,214,0 chr3 184647413 . T C 3070 PASS SNVHPOL=6;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:223:223:75:8:0,75:0,37:0,38:-107.2:PASS:370,226,0 chr3 184700356 . A C 2305 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:156:156:53:11:0,53:0,42:0,11:-40.4:PASS:370,160,0 chr3 185146702 . C T 1490 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:237:204:72:16:40,32:16,13:24,19:-25:PASS:239,0,328 chr3 185209413 . C T 691 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:377:344:108:14:55,53:34,21:21,32:-29.3:PASS:370,0,370 chr3 185331165 . C A 494 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:215:60:7:30,29:16,12:14,17:-23.1:PASS:250,0,258 chr3 185990096 . C T 1705 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:57:9:35,22:14,10:21,12:-18.8:PASS:172,0,321 chr3 186006566 . T C 968 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:105:58:20:39,19:31,15:8,4:-14:PASS:139,0,358 chr3 186006618 . G C 601 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:163:63:25:23,40:14,22:9,18:-38:PASS:358,0,160 chr3 186301703 . A G 466 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:280:266:72:7:35,37:15,23:20,14:-24.2:PASS:301,0,277 chr3 186330969 . C G 247 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:169:136:34:6:18,16:9,12:9,4:-10.7:PASS:170,0,193 chr3 186337713 . T C 1644 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:84:84:29:8:0,29:0,10:0,19:-35.6:PASS:370,87,0 chr3 186338382 . G C 2113 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:141:141:48:10:0,48:0,40:0,8:-31.3:PASS:370,144,0 chr3 186338425 . A C 2000 PASS SNVHPOL=5;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:19:0,40:0,32:0,8:-31.7:PASS:370,120,0 chr3 186364046 . G A 515 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:205:172:49:6:26,23:18,16:8,7:-19.5:PASS:207,0,242 chr3 186370333 . G T 2439 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:27:0,54:0,32:0,22:-67.6:PASS:370,162,0 chr3 186390627 . C T 1747 PASS SNVHPOL=4;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:5:0,44:0,21:0,23:-66:PASS:370,132,0 chr3 186395113 . A G 1873 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:312:279:103:17:56,47:31,30:25,17:-25.8:PASS:314,0,370 chr3 186395572 . A T 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:301:301:101:23:0,101:0,42:0,59:-121:PASS:370,304,0 chr3 186435370 . G A 1186 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:227:57:3:27,30:15,15:12,15:-30.4:PASS:272,0,225 chr3 186445052 . T G 543 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:293:280:79:13:38,41:24,24:14,17:-33.3:PASS:315,0,290 chr3 186509517 . G A 351 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:196:196:46:2:21,25:15,17:6,8:-22.5:PASS:243,0,193 chr3 186917751 . C G 1450 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:14:0,41:0,19:0,22:-60.8:PASS:370,123,0 chr3 186953808 . C T 439 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:227:194:77:18:45,32:21,21:24,11:-15.8:PASS:229,0,370 chr3 186954285 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:181:181:61:15:0,61:0,20:0,41:-63.1:PASS:370,184,0 chr3 187088812 . C T 579 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:338:305:101:10:53,48:29,25:24,23:-39:PASS:340,0,370 chr3 187088903 . C A 605 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:335:302:96:17:50,46:23,20:27,26:-34.4:PASS:337,0,370 chr3 187088926 . G A 1781 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:314:281:97:20:52,45:30,19:22,26:-26.7:PASS:316,0,370 chr3 187089031 . C A 445 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:238:205:84:24:49,35:21,13:28,22:-21.8:PASS:240,0,370 chr3 187416634 . C A 878 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:134:101:35:17:22,13:5,7:17,6:-10.6:PASS:136,0,233 chr3 187416666 . C T 370 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:168:135:42:11:24,18:15,6:9,12:-11.2:PASS:169,0,237 chr3 187416719 . T C 1116 PASS SNVHPOL=4;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:171:37:15:16,21:5,10:11,11:-24.2:PASS:224,0,168 chr3 187419816 . T C 418 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:34:21:21,13:14,5:7,8:-11.6:PASS:143,0,235 chr3 187446254 . G A 428 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:163:130:41:7:24,17:13,4:11,13:-9.6:PASS:164,0,243 chr3 187447032 . G A 1136 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:201:201:53:9:24,29:10,7:14,22:-17.2:PASS:267,0,198 chr3 188925364 . G A 1072 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:310:299:84:16:41,43:18,15:23,28:-27.1:PASS:335,0,307 chr3 189712010 . G A 2283 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:244:244:82:6:0,82:0,32:0,50:-96.5:PASS:370,247,0 chr3 190030680 . A G 3070 PASS SNVHPOL=7;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:253:253:85:20:0,85:0,54:0,31:-90.1:PASS:370,256,0 chr3 190106071 . AG A 1369 PASS CIGAR=1M1D;RU=G;REFREP=3;IDREP=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:627:615:86:45,41:22,19:23,22:PASS:644,0,624 chr3 190106074 . G C 509 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:259:226:74:12:40,34:20,14:20,20:-24.5:PASS:261,0,325 chr3 190158168 . G C 695 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:192:159:76:16:47,29:12,7:35,22:-15.7:PASS:194,0,370 chr3 190167533 . C T 405 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:131:50:6:31,19:18,8:13,11:-14.1:PASS:166,0,297 chr3 190999917 . C A 1616 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:182:148:82:11:53,29:25,12:28,17:-17.7:PASS:183,0,370 chr3 191179193 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:197:197:80:11:1,79:1,33:0,46:-88.2:PASS:370,200,0 chr3 193036794 . G C 2951 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:7:0,54:0,39:0,15:-50.5:PASS:370,163,0 chr3 193039597 . G A 880 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:123:123:42:14:0,42:0,11:0,31:-39.9:PASS:370,126,0 chr3 193042776 . T C 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:271:271:91:28:0,91:0,21:0,70:-66.2:PASS:370,274,0 chr3 193081122 . G T 493 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:294:261:81:5:43,38:31,14:12,24:-18:PASS:296,0,343 chr3 193180592 . G A 509 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:136:124:21:6:10,11:2,3:8,8:-15:PASS:159,0,133 chr3 193183817 . A G 1479 PASS SNVHPOL=6;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:198:181:42:6:20,22:14,18:6,4:-13.5:PASS:216,0,195 chr3 193209178 . T C 2021 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:207:206:49:7:22,27:9,11:13,16:-24.9:PASS:254,0,204 chr3 193210768 . A G 1538 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:248:241:60:6:28,32:19,18:9,14:-31.6:PASS:276,0,245 chr3 193334991 . G A 1007 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:225:192:55:6:29,26:20,10:9,16:-16.6:PASS:227,0,264 chr3 193374964 . T C 1399 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:277:244:103:10:59,44:22,18:37,26:-28.8:PASS:279,0,370 chr3 194061906 . T C 2052 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:129:129:44:6:0,44:0,26:0,18:-57.7:PASS:370,132,0 chr3 194061907 . G A 909 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:180:147:45:6:25,20:16,11:9,9:-20.9:PASS:182,0,240 chr3 194062565 . C T 1428 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:283:250:82:28:43,39:19,22:24,17:-26.9:PASS:284,0,327 chr3 194063153 . G A 1599 PASS SNVHPOL=7;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:195:162:64:16:38,26:22,11:16,15:-17.4:PASS:197,0,324 chr3 194063300 . T C 1740 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:257:224:75:25:41,34:27,23:14,11:-22.7:PASS:258,0,333 chr3 194118874 . T C 1989 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:135:135:46:5:0,46:0,24:0,22:-66.4:PASS:370,138,0 chr3 194337901 . T C 1697 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:144:144:49:28:0,49:0,25:0,24:-72.8:PASS:370,147,0 chr3 194353875 . G T 126 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:97:66:15:1:9,6:0,1:9,5:-8.7:PASS:101,0,98 chr3 194373832 . T C 871 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:280:247:76:6:40,36:18,15:22,21:-27.2:PASS:282,0,324:194373832 chr3 194373833 . G A 858 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 0|1:269:236:75:6:40,35:19,13:21,22:-22.7:PASS:271,0,321:194373832 chr3 194387300 . C T 480 PASS SNVHPOL=5;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:218:186:48:4:24,24:8,10:16,14:-24.2:PASS:221,0,225 chr3 194408704 . A G 175 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:126:93:21:7:12,9:3,4:9,5:-13.4:PASS:128,0,174 chr3 194790454 . G A 372 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:45:11:29,16:16,11:13,5:-11.2:PASS:144,0,295 chr3 195027339 . G A 409 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:213:213:56:7:25,31:4,14:21,17:-30.2:PASS:282,0,210 chr3 195256660 . C T 313 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:24:1:13,11:3,4:10,7:-17.2:PASS:155,0,171 chr3 195447911 . TTTC T 116 PASS CIGAR=1M3D;RU=TTC;REFREP=3;IDREP=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:68:37:10:5,4:3,1:2,3:PASS:65,0,74 chr3 195452754 . CAGAAAT C 448 PASS CIGAR=1M6D;RU=AGAAAT;REFREP=1;IDREP=0;MQ=43;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:237:194:35:19,15:17,13:2,2:PASS:234,0,281 chr3 195452770 . G A 220 PASS SNVHPOL=2;MQ=46;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:106:73:25:13:15,10:15,9:0,1:-7.8:PASS:108,0,145 chr3 195452799 . C T 339 PASS SNVHPOL=3;MQ=49;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:142:109:34:5:21,13:17,10:4,3:-13.7:PASS:144,0,230 chr3 195452951 . G C 374 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:171:138:33:9:17,16:10,8:7,8:-18.8:PASS:173,0,186 chr3 195453064 . T G 788 PASS SNVHPOL=2;MQ=58;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:45:12:22,22:11,12:11,10:-22.3:PASS:216,0,219 chr3 195456561 . C G 522 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:139:37:7:21,16:13,9:8,7:-19.7:PASS:174,0,223 chr3 195477779 . G A 233 PASS SNVHPOL=2;MQ=59;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:138:125:23:13:10,13:4,5:6,8:-16.3:PASS:160,0,135 chr3 195479256 . T C 1381 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:288:273:76:21:37,39:17,22:20,17:-29.7:PASS:308,0,285 chr3 195487798 . C T 338 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:214:181:48:6:25,23:12,8:13,15:-18.7:PASS:215,0,229 chr3 195489009 . C A 305 PASS SNVHPOL=4;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:37:17:22,14:9,8:13,6:-13.5:PASS:143,0,228 chr3 195497174 . C G 940 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:164:139:29:6:15,14:4,8:11,6:-15.7:PASS:174,0,162 chr3 195505664 . G A 773 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:172:172:39:4:17,22:12,14:5,8:-24:PASS:235,0,169 chr3 195515568 . C T 1403 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:170:170:67:19:25,42:9,23:16,19:-35.5:PASS:367,0,167 chr3 195515594 . C G 1157 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:203:203:66:17:28,38:8,23:20,15:-26.6:PASS:319,0,200 chr3 195515617 . G C 1237 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:273:245:68:20:34,34:12,16:22,18:-31.6:PASS:280,0,272 chr3 195515726 . G C 566 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:236:216:55:18:27,28:13,13:14,15:-28:PASS:251,0,233 chr3 195516630 . G T 1973 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:289:289:81:17:38,43:22,27:16,16:-31:PASS:347,0,286 chr3 195615376 . A G 442 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:228:228:62:13:28,34:14,22:14,12:-25.5:PASS:302,0,225 chr3 195938177 . A G 1020 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:141:108:30:8:16,14:6,2:10,12:-6.7:PASS:143,0,188 chr3 196199204 . G T 2677 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:407:394:122:16:60,62:32,35:28,27:-43.3:PASS:370,0,370 chr3 196235010 . C T 507 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:275:242:86:12:47,39:28,25:19,14:-23.1:PASS:277,0,368 chr3 196386964 . C G 1200 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:147:147:50:14:0,50:0,25:0,25:-76.2:PASS:370,150,0 chr3 196460680 . C T 425 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:153:120:37:7:21,16:11,10:10,6:-14.6:PASS:154,0,223 chr3 196509640 . C T 369 PASS SNVHPOL=3;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:166:133:64:4:41,23:20,10:21,13:-16.9:PASS:168,0,366 chr3 196613075 . C T 738 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:253:220:80:11:45,35:23,14:22,21:-21.5:PASS:255,0,364 chr3 196674259 . G A 557 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:197:164:50:8:27,23:15,13:12,10:-21.4:PASS:198,0,239 chr3 196674749 . C T 1585 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:159:159:54:23:0,54:0,28:0,26:-78.4:PASS:370,163,0 chr3 196674879 . A G 450 PASS SNVHPOL=2;MQ=60;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:200:167:62:10:36,26:14,12:22,14:-22.7:PASS:202,0,319 chr3 196674973 . T C 1824 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL:PS 1/1:184:184:62:10:0,62:0,26:0,36:-79.1:PASS:370,187,0:. chr3 196742290 . T C 794 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:96:96:33:9:0,33:0,10:0,23:-38.2:PASS:370,99,0 chr3 196743130 . T C 1335 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:184:184:62:12:0,62:0,29:0,33:-87.6:PASS:370,187,0 chr3 196746629 . T C 1394 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:168:168:57:12:0,57:0,10:0,47:-36.2:PASS:370,172,0 chr3 197495334 . G A 2174 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:295:295:99:9:0,99:0,66:0,33:-96.6:PASS:370,298,0 chr3 197566254 . T C 2466 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:259:259:87:3:0,87:0,31:0,56:-91.8:PASS:370,262,0 chr3 197880130 . GGCAGCAGCA G 2866 PASS CIGAR=1M9D;RU=GCA;REFREP=14;IDREP=11;MQ=47;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:16:16:41:4,28:1,10:3,18:PASS:565,19,0 chr3 197882506 . T C 724 PASS SNVHPOL=3;MQ=26;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:39:39:14:4:0,14:0,12:0,2:-14.6:PASS:244,42,0 chr3 197884212 . C T 233 PASS SNVHPOL=2;MQ=35;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:100:70:9:0:4,5:2,2:2,3:-8.3:PASS:105,0,100 chr3 197894713 . A G 960 PASS SNVHPOL=5;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:245:212:70:8:38,32:7,12:31,20:-28.3:PASS:247,0,314 chr3 197894720 . T C 699 PASS SNVHPOL=3;MQ=53;AC=1;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 0/1:215:182:62:17:35,27:6,8:29,19:-22.3:PASS:216,0,306 chr4 85995 . C CA 3070 PASS CIGAR=1M1I;RU=A;REFREP=2;IDREP=3;MQ=55;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:169:169:63:0,58:0,24:0,34:PASS:999,172,0 chr4 86016 . G GC 819 PASS CIGAR=1M1I;RU=C;REFREP=1;IDREP=2;MQ=53;AC=1;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 0/1:313:313:60:24,28:8,7:16,21:PASS:488,0,310 chr4 87277 . G C 3070 PASS SNVHPOL=5;MQ=59;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:190:190:64:22:0,64:0,34:0,30:-89.1:PASS:370,193,0 chr4 87313 . G GA 3070 PASS CIGAR=1M1I;RU=A;REFREP=1;IDREP=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DPI:AD:ADF:ADR:FT:PL 1/1:241:241:88:0,82:0,37:0,45:PASS:999,244,0 chr4 648643 . G A 2542 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:117:117:40:16:0,40:0,29:0,11:-38.5:PASS:370,120,0 chr4 843695 . A G 1872 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:120:120:41:13:0,41:0,12:0,29:-42.2:PASS:370,123,0 chr4 858941 . T C 3070 PASS SNVHPOL=2;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:232:232:78:22:0,78:0,52:0,26:-77.5:PASS:370,235,0 chr4 860192 . A G 3070 PASS SNVHPOL=3;MQ=60;AC=2;AN=2 GT:GQ:GQX:DP:DPF:AD:ADF:ADR:SB:FT:PL 1/1:241:241:81:20:0,81:0,30:0,51:-89.6:PA