##fileformat=VCFv4.2 ##reference=/sg/pipelineData/genome/Homo_sapiens/hg19_karyotypicOrdered/fasta/human_g1k_v37.fasta ##species=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 ##genome-build=GRCh37 ##technology-platform-name=Illumina ##technology-platform-read-type=pair ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO 1 976514 chr1:SNP:1 C A 205 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs79290478,esp5400:0.948027; 1 977203 chr1:SNP:2 G C 237 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3121552,g1000:0.896765; 1 977330 chr1:SNP:3 T C 2259 . DP=86;DP4=0,0,53,33;AD=0,86;TYPE=SNP;DBXREF=dbSNP:rs2799066,g1000:0.885184,esp5400:0.852531,ExAC:0.915,clinvar:rs2799066|2; 1 977570 chr1:SNP:4 G A 658 off_target DP=25;DP4=0,0,3,22;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs2710876,g1000:0.794129,esp5400:0.768212,ExAC:0.879,clinvar:rs2710876|2; 1 978603 chr1:INDEL:1 CCT C 303 off_target DP=45;DP4=20,10,10,5;AD=30,15;TYPE=INDEL;DBXREF=dbSNP:rs35881187,g1000:0.479233,ExAC:0.497,clinvar:rs35881187|2; 1 981087 chr1:SNP:5 A G 2266 off_target DP=88;DP4=1,0,49,38;AD=1,87;TYPE=SNP;DBXREF=dbSNP:rs3128098,g1000:0.869409,esp5400:0.832311,ExAC:0.912,clinvar:rs3128098|2; 1 981931 chr1:SNP:6 A G 2055 . DP=76;DP4=0,0,35,41;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs2465128,g1000:0.797724,esp5400:0.778823,ExAC:0.873,clinvar:rs2465128|2; 1 982444 chr1:SNP:7 A G 342 low_coverage;off_target DP=13;DP4=0,0,1,12;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs3128099,g1000:0.821885; 1 982462 chr1:SNP:8 T C 237 low_coverage;off_target DP=9;DP4=0,0,1,8;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3128100,g1000:0.980831; 1 982941 chr1:SNP:9 T C 2266 off_target DP=88;DP4=1,0,48,39;AD=1,87;TYPE=SNP;DBXREF=dbSNP:rs3128102,g1000:0.79992,esp5400:0.764181,ExAC:0.884,clinvar:rs3128102|2; 1 982994 chr1:SNP:10 T C 2225 . DP=89;DP4=1,0,40,48;AD=1,88;TYPE=SNP;DBXREF=dbSNP:rs10267,g1000:0.835863,esp5400:0.787972,ExAC:0.898,clinvar:rs10267|2; 1 984302 chr1:SNP:11 T C 848 . DP=65;DP4=18,9,26,12;AD=27,38;TYPE=SNP;DBXREF=dbSNP:rs9442391,g1000:0.545727,esp5400:0.459677,ExAC:0.501,clinvar:rs9442391|2; 1 985266 chr1:SNP:12 C T 472 off_target DP=69;DP4=22,22,12,13;AD=44,25;TYPE=SNP;DBXREF=dbSNP:rs2275813,g1000:0.495208,esp5400:0.396734,ExAC:0.535,clinvar:rs2275813|2; 1 985446 chr1:SNP:13 G T 150 low_coverage;off_target DP=12;DP4=4,1,4,3;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs2275812,g1000:0.335463,esp5400:0.618579,ExAC:0.419,clinvar:rs2275812|2; 1 985449 chr1:SNP:14 G A 127 low_coverage;off_target DP=11;DP4=4,1,3,3;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2799067,g1000:0.525559,esp5400:0.989637,ExAC:0.465,clinvar:rs2799067|2; 1 987200 chr1:SNP:15 C T 2171 . DP=86;DP4=1,0,34,50;AD=1,84;TYPE=SNP;DBXREF=dbSNP:rs9803031,g1000:0.788738,esp5400:0.754185,ExAC:0.875,clinvar:rs9803031|2; 1 990280 chr1:SNP:16 C T 1606 . DP=61;DP4=1,0,43,17;AD=1,60;TYPE=SNP;DBXREF=dbSNP:rs4275402,g1000:0.585264,esp5400:0.573574,ExAC:0.573,clinvar:rs4275402|2; 1 990517 chr1:SNP:17 C T 240 off_target DP=25;DP4=1,12,0,12;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs2710872,g1000:0.917931; 1 1147422 chr1:SNP:18 C T 147 low_coverage DP=17;DP4=10,0,7,0;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs17568,g1000:0.498403,esp5400:0.266766,ExAC:0.355,MutationTaster:1; 1 1268847 chr1:SNP:19 T G 2217 off_target DP=82;DP4=0,0,47,35;AD=0,82;TYPE=SNP;DBXREF=dbSNP:rs307378,g1000:0.951677,esp5400:0.976926,ExAC:0.961; 1 1269554 chr1:SNP:20 T C 10000 . DP=199;DP4=0,0,92,107;AD=0,199;TYPE=SNP;DBXREF=dbSNP:rs307377,g1000:0.951877,esp5400:0.976809,ExAC:0.957,MutationTaster:0; 1 1634505 chr1:SNP:21 G A 634 off_target DP=64;DP4=17,15,9,22;AD=32,31;TYPE=SNP;DBXREF=dbSNP:rs9439488,esp5400:0.2; 1 1635004 chr1:SNP:22 T C 2835 . DP=108;DP4=0,0,57,51;AD=0,108;TYPE=SNP;DBXREF=dbSNP:rs874516,g1000:0.592252,esp5400:0.611705,ExAC:0.532; 1 1635619 chr1:SNP:23 T C 2416 off_target DP=92;DP4=0,0,68,24;AD=0,92;TYPE=SNP;DBXREF=dbSNP:rs2076329,g1000:0.646965,esp5400:0.684468,ExAC:0.606; 1 1635749 chr1:SNP:24 C A 2495 . DP=106;DP4=1,3,40,61;AD=4,101;TYPE=SNP;DBXREF=dbSNP:rs1136997,g1000:0.397564,esp5400:0.453051,ExAC:0.472; 1 1636044 chr1:SNP:25 G A 2276 . DP=91;DP4=0,1,43,47;AD=1,90;TYPE=SNP;DBXREF=dbSNP:rs1059822,g1000:0.647963,esp5400:0.642784,ExAC:0.577; 1 1636274 chr1:SNP:26 C T 853 off_target DP=34;DP4=0,0,25,8;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2179381,g1000:0.296725,ExAC:0.443; 1 1639046 chr1:SNP:27 C G 1036 off_target DP=48;DP4=2,3,3,40;AD=5,43;TYPE=SNP;DBXREF=dbSNP:rs71509490,g1000:0.579473,esp5400:0.459265,ExAC:0.381; 1 1639062 chr1:SNP:28 T C 879 off_target DP=35;DP4=0,1,1,33;AD=1,34;TYPE=SNP;DBXREF=dbSNP:rs2076330,g1000:0.376997,esp5400:0.141016,ExAC:0.205; 1 1639801 chr1:SNP:29 T C 486 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs74378830,g1000:0.573682; 1 1640213 chr1:SNP:30 C T 115 low_variant_fraction;off_target DP=36;DP4=25,4,6,1;AD=29,7;TYPE=SNP; 1 1640294 chr1:INDEL:2 TTCCTCCTCC T 685 . DP=73;DP4=17,5,18,14;AD=22,32;TYPE=INDEL;DBXREF=dbSNP:rs199942750; 1 1640390 chr1:SNP:31 C T 867 . DP=54;DP4=6,10,7,31;AD=16,38;TYPE=SNP;DBXREF=dbSNP:rs555887612,g1000:0.0882588,MutationTaster:1; 1 1643954 chr1:SNP:32 T A 154 low_coverage;off_target DP=8;DP4=0,1,0,7;AD=1,7;TYPE=SNP;DBXREF=dbSNP:rs577911150,g1000:0.0992412; 1 1647686 chr1:SNP:33 A C 380 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs909823,g1000:0.751997; 1 1648027 chr1:SNP:34 T C 448 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs61776857,g1000:0.770168; 1 1653004 chr1:SNP:35 T C 894 off_target DP=33;DP4=0,0,24,9;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs36039898,g1000:0.747404,esp5400:0.81055,ExAC:0.851; 1 1653028 chr1:SNP:36 C T 1210 . DP=46;DP4=0,0,29,17;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs16825265,g1000:0.747404,esp5400:0.814192,ExAC:0.853; 1 1653303 chr1:SNP:37 T C 307 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs35548050,g1000:0.747804; 1 1653332 chr1:INDEL:3 GTT GT 119 low_coverage;off_target DP=11;DP4=0,1,0,10;AD=1,10;TYPE=INDEL;DBXREF=dbSNP:rs34038185,g1000:0.747604; 1 1654038 chr1:SNP:38 G A 335 low_coverage;off_target DP=15;DP4=1,0,14,0;AD=1,14;TYPE=SNP;DBXREF=dbSNP:rs61777494,esp5400:0.620476,ExAC:0.555; 1 1654058 chr1:SNP:39 C T 434 low_coverage;off_target DP=17;DP4=1,0,16,0;AD=1,16;TYPE=SNP;DBXREF=dbSNP:rs61777495,esp5400:0.625445,ExAC:0.603; 1 1654064 chr1:SNP:40 A T 395 low_coverage;off_target DP=16;DP4=1,0,15,0;AD=1,15;TYPE=SNP;DBXREF=dbSNP:rs200615789,g1000:0.667133,esp5400:0.421764,ExAC:0.605; 1 1654065 chr1:INDEL:4 AGCG A 506 off_target DP=21;DP4=2,0,19,0;AD=2,19;TYPE=INDEL;DBXREF=dbSNP:rs35174499,g1000:0.667133; 1 1956362 chr1:SNP:41 G A 2449 off_target DP=95;DP4=1,0,69,25;AD=1,94;TYPE=SNP;DBXREF=dbSNP:rs2376805,g1000:0.775559,esp5400:0.820785,ExAC:0.803,clinvar:rs2376805|2; 1 1957037 chr1:SNP:42 T C 1062 . DP=79;DP4=11,18,23,27;AD=29,50;TYPE=SNP;DBXREF=dbSNP:rs2229110,g1000:0.561302,esp5400:0.688883,ExAC:0.592,clinvar:rs2229110|2; 1 1959261 chr1:SNP:43 A G 461 low_coverage;off_target DP=17;DP4=0,0,8,9;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs28574670,g1000:0.856629; 1 1959861 chr1:INDEL:5 GC GCC 296 off_target DP=28;DP4=7,5,9,6;AD=12,15;TYPE=INDEL;DBXREF=dbSNP:rs138736063; 1 1961408 chr1:SNP:44 C T 557 off_target DP=46;DP4=13,7,16,10;AD=20,26;TYPE=SNP;DBXREF=dbSNP:rs28431879,g1000:0.19988,esp5400:0.091977,ExAC:0.181,clinvar:rs28431879|2; 1 2338126 chr1:SNP:45 C A 116 off_target DP=30;DP4=14,9,1,6;AD=23,7;TYPE=SNP;DBXREF=dbSNP:rs3795269,g1000:0.339058,esp5400:0.377559,ExAC:0.392; 1 2340200 chr1:SNP:46 T C 1487 . DP=123;DP4=20,33,27,43;AD=53,70;TYPE=SNP;DBXREF=dbSNP:rs2494598,g1000:0.698882,esp5400:0.743726,ExAC:0.77,clinvar:rs2494598|255; 1 2522392 chr1:SNP:47 G A 152 low_coverage;off_target DP=13;DP4=4,2,3,4;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2296443,g1000:0.196286,esp5400:0.2375,ExAC:0.231; 1 2524205 chr1:SNP:48 C T 855 off_target DP=70;DP4=19,11,27,13;AD=30,40;TYPE=SNP;DBXREF=dbSNP:rs745368,g1000:0.497404,esp5400:0.403274,ExAC:0.386; 1 2524457 chr1:SNP:49 T C 452 off_target DP=37;DP4=7,9,4,17;AD=16,21;TYPE=SNP;DBXREF=dbSNP:rs745367,g1000:0.539337,esp5400:0.447164,ExAC:0.408; 1 2524485 chr1:SNP:50 C T 154 off_target DP=23;DP4=0,15,0,8;AD=15,8;TYPE=SNP;DBXREF=dbSNP:rs1555790,g1000:0.272564; 1 2530341 chr1:INDEL:6 AG AGG 327 off_target DP=38;DP4=5,15,2,16;AD=20,18;TYPE=INDEL;DBXREF=dbSNP:rs34705971,g1000:0.504193; 1 2535092 chr1:INDEL:7 ACT A 295 off_target DP=36;DP4=22,0,13,1;AD=22,14;TYPE=INDEL;DBXREF=dbSNP:rs35090174,g1000:0.478235; 1 2535613 chr1:SNP:51 C A 630 . DP=55;DP4=7,19,9,20;AD=26,29;TYPE=SNP;DBXREF=dbSNP:rs4648562,g1000:0.496006,esp5400:0.403775,ExAC:0.385,MutationTaster:1; 1 2535758 chr1:SNP:52 A G 350 off_target DP=27;DP4=2,9,6,10;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs4648652,g1000:0.539337,esp5400:0.451351,ExAC:0.408; 1 2535895 chr1:SNP:53 C T 273 low_coverage;off_target DP=18;DP4=1,5,3,9;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs4648653,g1000:0.494609; 1 2537095 chr1:SNP:54 G A 151 off_target DP=29;DP4=11,10,1,7;AD=21,8;TYPE=SNP;DBXREF=dbSNP:rs78506337,g1000:0.508387,esp5400:0.417783,ExAC:0.389; 1 2538349 chr1:SNP:55 G A 127 off_target DP=22;DP4=13,2,7,0;AD=15,7;TYPE=SNP;DBXREF=dbSNP:rs10797436,g1000:0.476038; 1 2541269 chr1:SNP:56 A G 677 . DP=59;DP4=7,19,11,22;AD=26,33;TYPE=SNP;DBXREF=dbSNP:rs10797440,g1000:0.53155,esp5400:0.442368,ExAC:0.406; 1 2542653 chr1:SNP:57 A G 150 low_coverage;off_target DP=19;DP4=5,6,5,3;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs10910111,g1000:0.538938,esp5400:0.403618; 1 2560735 chr1:SNP:58 A G 227 low_coverage;off_target DP=11;DP4=2,0,8,1;AD=2,9;TYPE=SNP;DBXREF=dbSNP:rs4648657,g1000:0.517772,esp5400:0.642329,ExAC:0.468; 1 2560882 chr1:SNP:59 G A 246 . DP=23;DP4=1,10,2,10;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs4648658,g1000:0.461462,esp5400:0.588556,ExAC:0.504; 1 2560903 chr1:SNP:60 T G 255 low_coverage DP=18;DP4=0,6,4,8;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs4648659,g1000:0.515775,esp5400:0.63709,ExAC:0.547; 1 3598900 chr1:SNP:61 G A 150 off_target DP=27;DP4=10,8,4,5;AD=18,9;TYPE=SNP;DBXREF=dbSNP:rs2273953,g1000:0.177516,esp5400:0.171967,ExAC:0.149; 1 3598910 chr1:SNP:62 C T 242 off_target DP=32;DP4=11,9,6,6;AD=20,12;TYPE=SNP;DBXREF=dbSNP:rs1801173,g1000:0.177915,esp5400:0.172979,ExAC:0.145; 1 3607520 chr1:SNP:63 G A 544 off_target DP=82;DP4=26,26,11,19;AD=52,30;TYPE=SNP;DBXREF=dbSNP:rs3765730,g1000:0.236821,esp5400:0.271484,ExAC:0.26; 1 3638593 chr1:SNP:64 G A 392 . DP=39;DP4=15,5,12,7;AD=20,19;TYPE=SNP;DBXREF=dbSNP:rs61747511,g1000:0.00778754,esp5400:0.018033,ExAC:0.016; 1 3638674 chr1:SNP:65 C T 1788 . DP=68;DP4=0,0,39,29;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs1801174,g1000:0.736022,esp5400:0.847814,ExAC:0.81; 1 3638767 chr1:SNP:66 C T 717 . DP=81;DP4=18,27,11,25;AD=45,36;TYPE=SNP;DBXREF=dbSNP:rs61747512,g1000:0.00599042,esp5400:0.0134,ExAC:0.013; 1 3638834 chr1:SNP:67 C T 325 off_target DP=30;DP4=0,14,0,15;AD=14,15;TYPE=SNP;DBXREF=dbSNP:rs12737840,g1000:0.224241; 1 3644085 chr1:SNP:68 G A 158 off_target DP=24;DP4=15,1,8,0;AD=16,8;TYPE=SNP;DBXREF=dbSNP:rs10910017,g1000:0.221446; 1 3644349 chr1:SNP:69 A G 2161 off_target DP=84;DP4=0,0,26,57;AD=0,83;TYPE=SNP;DBXREF=dbSNP:rs2181486,g1000:0.64996,esp5400:0.792102,ExAC:0.639; 1 3644374 chr1:SNP:70 A G 1341 off_target DP=51;DP4=0,0,15,36;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs2146657,g1000:0.64996,esp5400:0.795603,ExAC:0.639; 1 3645835 chr1:SNP:71 C A 298 low_coverage;off_target DP=11;DP4=0,0,10,1;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2254530,g1000:0.398163; 1 3645844 chr1:SNP:72 G A 527 off_target DP=20;DP4=0,0,17,3;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2096224,g1000:0.539736,esp5400:0.671936,ExAC:0.668; 1 3647962 chr1:SNP:73 T C 1079 off_target DP=41;DP4=0,0,33,8;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs1745813,g1000:0.549521; 1 5925371 chr1:SNP:74 G A 421 low_coverage;off_target DP=17;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs1287634,g1000:0.317891,esp5400:0.338323,ExAC:0.313,clinvar:rs1287634|2; 1 5926507 chr1:SNP:75 T C 974 . DP=37;DP4=0,0,13,24;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs555164,g1000:0.319688,esp5400:0.35059,ExAC:0.375,clinvar:rs555164|2; 1 5933530 chr1:SNP:76 A G 179 low_coverage;off_target DP=17;DP4=1,8,0,8;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs905469,g1000:0.0750799; 1 5934490 chr1:SNP:77 A G 2338 off_target DP=89;DP4=0,0,50,39;AD=0,89;TYPE=SNP;DBXREF=dbSNP:rs868163,g1000:0.569289,esp5400:0.671174,ExAC:0.46,clinvar:rs868163|2; 1 5934500 chr1:SNP:78 T C 2416 off_target DP=92;DP4=0,0,49,43;AD=0,92;TYPE=SNP;DBXREF=dbSNP:rs905467,g1000:0.271166,esp5400:0.175921,ExAC:0.185,clinvar:rs905467|2; 1 5934837 chr1:SNP:79 C T 456 off_target DP=36;DP4=7,8,10,11;AD=15,21;TYPE=SNP;DBXREF=dbSNP:rs1287638,g1000:0.404952; 1 5935162 chr1:SNP:80 A T 195 low_coverage DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs1287637,g1000:0.843251,esp5400:0.844457,ExAC:0.825,clinvar:rs1287637|2,MutationTaster:1; 1 5965455 chr1:SNP:81 C T 847 . DP=65;DP4=11,15,16,23;AD=26,39;TYPE=SNP;DBXREF=dbSNP:rs571655,g1000:0.00519169,esp5400:0.010182,ExAC:0.01,clinvar:rs571655|2|2,MutationTaster:0.997; 1 6046432 chr1:SNP:82 C G 281 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1295111,g1000:0.38778; 1 6100458 chr1:SNP:83 G A 195 low_coverage;off_target DP=9;DP4=1,0,8,0;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs12566866,g1000:0.435104; 1 6101773 chr1:SNP:84 G A 239 off_target DP=29;DP4=15,2,11,1;AD=17,12;TYPE=SNP;DBXREF=dbSNP:rs41275470,g1000:0.00519169; 1 6145365 chr1:SNP:85 A G 632 off_target DP=24;DP4=0,0,6,18;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2294936,g1000:0.686502,esp5400:0.690167; 1 6145379 chr1:SNP:86 C T 144 low_coverage;off_target DP=16;DP4=3,6,1,6;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs2294935,g1000:0.0894569,esp5400:0.098021; 1 6149053 chr1:SNP:87 C T 980 off_target DP=81;DP4=18,17,22,24;AD=35,46;TYPE=SNP;DBXREF=dbSNP:rs2273043,g1000:0.0972444,esp5400:0.072971,ExAC:0.043; 1 6149122 chr1:SNP:88 G A 474 off_target DP=47;DP4=9,15,5,18;AD=24,23;TYPE=SNP;DBXREF=dbSNP:rs2273042,g1000:0.0970447,esp5400:0.072572,ExAC:0.047; 1 6154417 chr1:SNP:89 C T 634 off_target DP=63;DP4=17,15,20,10;AD=32,30;TYPE=SNP;DBXREF=dbSNP:rs2294932,g1000:0.23103,esp5400:0.20127,ExAC:0.205; 1 6155332 chr1:SNP:90 T C 613 off_target DP=24;DP4=0,0,19,5;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs1555144,g1000:0.727236,esp5400:0.78303,ExAC:0.659; 1 6157282 chr1:SNP:91 C T 902 off_target DP=98;DP4=39,13,33,12;AD=52,45;TYPE=SNP;DBXREF=dbSNP:rs749434,g1000:0.262979,esp5400:0.35791,ExAC:0.147; 1 6157297 chr1:SNP:92 T C 1294 off_target DP=108;DP4=32,14,41,20;AD=46,61;TYPE=SNP;DBXREF=dbSNP:rs749435,g1000:0.102436,esp5400:0.079016,ExAC:0.037; 1 6157434 chr1:SNP:93 C T 416 off_target DP=53;DP4=4,27,5,17;AD=31,22;TYPE=SNP;DBXREF=dbSNP:rs2311802,g1000:0.454073,esp5400:0.571541,ExAC:0.357; 1 6158562 chr1:SNP:94 A G 1394 . DP=53;DP4=0,0,32,21;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs2229002,g1000:0.54393,esp5400:0.615377,ExAC:0.574; 1 6500626 chr1:INDEL:8 CGGG CGGGG 111 low_coverage;off_target DP=13;DP4=0,2,10,1;AD=2,11;TYPE=INDEL;DBXREF=dbSNP:rs371548369,g1000:1; 1 6530965 chr1:INDEL:9 CGGG CGGGG 630 off_target DP=68;DP4=3,3,33,28;AD=6,61;TYPE=INDEL;DBXREF=dbSNP:rs111312565,g1000:1,ExAC:1; 1 6579460 chr1:SNP:95 C T 1166 off_target DP=98;DP4=25,18,35,20;AD=43,55;TYPE=SNP;DBXREF=dbSNP:rs1010583,g1000:0.0235623,esp5400:0.019634,ExAC:0.007588; 1 6579607 chr1:SNP:96 C T 151 off_target DP=29;DP4=3,18,1,7;AD=21,8;TYPE=SNP;DBXREF=dbSNP:rs1556035,g1000:0.746006,esp5400:0.774097,ExAC:0.851; 1 6615444 chr1:SNP:97 G A 866 . DP=76;DP4=31,5,36,4;AD=36,40;TYPE=SNP;DBXREF=dbSNP:rs35375392,g1000:0.014377,esp5400:0.013021,ExAC:0.005698,MutationTaster:0; 1 6615690 chr1:SNP:98 A G 364 off_target DP=40;DP4=2,20,5,13;AD=22,18;TYPE=SNP;DBXREF=dbSNP:rs925745,g1000:0.724641; 1 6615695 chr1:SNP:99 C T 298 off_target DP=36;DP4=1,19,5,11;AD=20,16;TYPE=SNP;DBXREF=dbSNP:rs925744,g1000:0.738419; 1 6631319 chr1:SNP:100 G A 281 low_coverage;off_target DP=11;DP4=0,0,2,9;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs11122096,g1000:0.888578,esp5400:0.901376,ExAC:0.953; 1 6635231 chr1:SNP:101 A G 1578 . DP=60;DP4=0,0,34,26;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs10864628,g1000:0.923323,esp5400:0.92006,ExAC:0.977,MutationTaster:0; 1 6636461 chr1:SNP:102 C T 588 off_target DP=23;DP4=0,0,18,5;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs17492553,g1000:0.369808,esp5400:0.437721,ExAC:0.473; 1 6947717 chr1:SNP:103 C T 523 . DP=48;DP4=11,12,10,15;AD=23,25;TYPE=SNP;DBXREF=dbSNP:rs3810982,g1000:0.208267,ExAC:0.156,MutationTaster:1; 1 6947973 chr1:SNP:104 C T 143 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs3827726,g1000:0.214856; 1 7151262 chr1:SNP:105 C T 269 low_coverage;off_target DP=19;DP4=7,0,12,0;AD=7,12;TYPE=SNP;DBXREF=dbSNP:rs12070413,g1000:0.053115; 1 7527996 chr1:SNP:106 T C 352 off_target DP=45;DP4=8,19,6,12;AD=27,18;TYPE=SNP;DBXREF=dbSNP:rs1201529,g1000:0.464058,esp5400:0.605875,ExAC:0.498; 1 7723957 chr1:SNP:107 G A 2910 . DP=116;DP4=0,0,65,50;AD=0,115;TYPE=SNP;DBXREF=dbSNP:rs12128526,g1000:0.40016,esp5400:0.427217,ExAC:0.445,clinvar:rs12128526|3; 1 7725284 chr1:SNP:108 C A 1000 off_target DP=38;DP4=0,0,13,25;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs4908671,g1000:0.228235,esp5400:0.285016,ExAC:0.312; 1 7797734 chr1:SNP:109 T A 279 low_coverage;off_target DP=12;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1417986,g1000:0.599241; 1 7807897 chr1:SNP:110 A G 298 low_coverage;off_target DP=11;DP4=0,0,3,8;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs12133253,g1000:0.605831,esp5400:0.698207; 1 7811215 chr1:SNP:111 A G 786 off_target DP=29;DP4=0,0,21,8;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs10779689,g1000:0.616014,esp5400:0.683491,ExAC:0.671; 1 7812398 chr1:SNP:112 A G 500 low_coverage;off_target DP=19;DP4=0,0,19,0;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs9919223,g1000:0.628594; 1 7815554 chr1:SNP:113 G A 486 low_coverage;off_target DP=19;DP4=0,0,19,0;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs12408963,g1000:0.0553115; 1 7826347 chr1:SNP:114 C T 244 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs697672,g1000:0.908147; 1 7858925 chr1:SNP:115 T C 487 off_target DP=20;DP4=0,0,1,18;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs228686,g1000:0.976238; 1 7861153 chr1:INDEL:10 CTTT CTTTT 345 off_target DP=49;DP4=3,3,21,17;AD=6,38;TYPE=INDEL;DBXREF=dbSNP:rs34433622,g1000:0.427915,ExAC:0.529; 1 7861345 chr1:SNP:116 G A 256 low_coverage;off_target DP=10;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs488728,g1000:0.525559; 1 7863051 chr1:SNP:117 A T 342 low_coverage;off_target DP=13;DP4=0,0,10,3;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs72632072,g1000:0.0439297; 1 7863293 chr1:SNP:118 C T 1226 off_target DP=48;DP4=0,0,9,39;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs228642,g1000:0.416334; 1 7869915 chr1:SNP:119 G C 596 off_target DP=22;DP4=0,0,18,4;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs228668,g1000:0.976238,esp5400:0.961682,ExAC:0.968; 1 7870048 chr1:SNP:120 T C 1435 . DP=53;DP4=0,0,19,34;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs228669,g1000:0.878994,esp5400:0.936698,ExAC:0.891; 1 7870144 chr1:SNP:121 A C 298 low_coverage;off_target DP=11;DP4=0,0,4,7;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs228670,g1000:0.976238; 1 7879130 chr1:SNP:122 T G 158 low_coverage;off_target DP=6;DP4=0,0,6,0;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs228688,g1000:0.552516; 1 7880469 chr1:SNP:123 A G 1539 off_target DP=62;DP4=0,1,44,17;AD=1,61;TYPE=SNP;DBXREF=dbSNP:rs228691,g1000:0.552915; 1 7887493 chr1:SNP:124 T C 2346 . DP=92;DP4=0,0,59,33;AD=0,92;TYPE=SNP;DBXREF=dbSNP:rs228696,g1000:0.97524,esp5400:0.961145,ExAC:0.969,MutationTaster:0; 1 7887926 chr1:SNP:125 A G 1761 off_target DP=67;DP4=0,0,14,53;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs11590657,g1000:0.0623003,esp5400:0.081313,ExAC:0.068; 1 7890064 chr1:SNP:126 A G 2157 . DP=90;DP4=5,0,47,38;AD=5,85;TYPE=SNP;DBXREF=dbSNP:rs12023156,g1000:0.244808,esp5400:0.280041,ExAC:0.13,MutationTaster:0; 1 7907805 chr1:INDEL:11 CT CTT 627 off_target DP=27;DP4=0,0,22,5;AD=0,27;TYPE=INDEL;DBXREF=dbSNP:rs112820691,ExAC:0.072; 1 7913430 chr1:SNP:127 G A 1728 . DP=69;DP4=1,1,33,34;AD=2,67;TYPE=SNP;DBXREF=dbSNP:rs228648,g1000:0.478435,esp5400:0.536538,ExAC:0.523,MutationTaster:0; 1 8924282 chr1:SNP:128 A G 271 low_coverage;off_target DP=10;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1543711,g1000:0.757788; 1 8928125 chr1:SNP:129 G T 1122 . DP=103;DP4=20,29,20,34;AD=49,54;TYPE=SNP;DBXREF=dbSNP:rs2071412,g1000:0.34345,esp5400:0.227459,ExAC:0.318; 1 8930385 chr1:SNP:130 G A 352 low_coverage;off_target DP=13;DP4=0,0,12,1;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2765511,g1000:0.781749; 1 8935149 chr1:SNP:131 A G 527 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2038904,g1000:0.84984; 1 9009406 chr1:SNP:132 C T 1076 . DP=129;DP4=42,32,35,20;AD=74,55;TYPE=SNP;DBXREF=dbSNP:rs2274327,g1000:0.270168,esp5400:0.319297,ExAC:0.354,MutationTaster:0; 1 9009444 chr1:SNP:133 A C 1324 . DP=151;DP4=39,45,31,36;AD=84,67;TYPE=SNP;DBXREF=dbSNP:rs2274328,g1000:0.501398,esp5400:0.529281,ExAC:0.49,MutationTaster:1; 1 9017204 chr1:SNP:134 A G 295 . DP=24;DP4=6,4,9,5;AD=10,14;TYPE=SNP;DBXREF=dbSNP:rs2274333,g1000:0.34385,esp5400:0.249396,ExAC:0.325,MutationTaster:0.001; 1 9030964 chr1:SNP:135 C T 574 . DP=91;DP4=36,24,17,14;AD=60,31;TYPE=SNP;DBXREF=dbSNP:rs3737665,g1000:0.288538,esp5400:0.191671,ExAC:0.249; 1 9034421 chr1:SNP:136 G A 298 . DP=36;DP4=9,12,7,8;AD=21,15;TYPE=SNP;DBXREF=dbSNP:rs3765964,g1000:0.460064,esp5400:0.355072,ExAC:0.317,MutationTaster:0; 1 9034598 chr1:SNP:137 A G 221 low_coverage;off_target DP=17;DP4=6,1,8,2;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs3765963,g1000:0.578275; 1 9034815 chr1:INDEL:12 C CAGA 783 off_target DP=45;DP4=5,8,5,27;AD=13,32;TYPE=INDEL;DBXREF=dbSNP:rs35753212,g1000:0.748003,ExAC:0.565; 1 9304978 chr1:INDEL:13 CCCCAGGCA C 206 . DP=29;DP4=19,0,10,0;AD=19,10;TYPE=INDEL;DBXREF=dbSNP:rs139855605,g1000:0.108227,ExAC:0.154; 1 9307308 chr1:INDEL:14 TG TGG 273 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=INDEL;DBXREF=dbSNP:rs56110957,g1000:1; 1 9324571 chr1:SNP:138 T C 879 . DP=64;DP4=10,14,18,22;AD=24,40;TYPE=SNP;DBXREF=dbSNP:rs9434742,g1000:0.402955,esp5400:0.431362,ExAC:0.414; 1 9324670 chr1:SNP:139 A G 1080 . DP=77;DP4=18,10,36,13;AD=28,49;TYPE=SNP;DBXREF=dbSNP:rs9434743,g1000:0.402157,esp5400:0.427761,ExAC:0.407; 1 9777697 chr1:INDEL:15 G GGATA 221 off_target DP=35;DP4=8,16,4,7;AD=24,11;TYPE=INDEL;DBXREF=dbSNP:rs755190125,ExAC:0.0005602; 1 9781412 chr1:SNP:140 C G 677 off_target DP=25;DP4=0,0,8,17;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs12735071,g1000:0.178315; 1 9782556 chr1:SNP:141 C T 2783 off_target DP=106;DP4=0,0,54,52;AD=0,106;TYPE=SNP;DBXREF=dbSNP:rs11589267,g1000:0.165535,esp5400:0.339747,ExAC:0.334; 1 10318652 chr1:SNP:142 C G 1473 . DP=56;DP4=0,0,35,21;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs12402052,g1000:0.230032,esp5400:0.22625,ExAC:0.269,clinvar:rs12402052|255; 1 10322054 chr1:SNP:143 G A 1031 off_target DP=42;DP4=0,1,14,27;AD=1,41;TYPE=SNP;DBXREF=dbSNP:rs4846209,g1000:0.339856,esp5400:0.344738,ExAC:0.337; 1 10322153 chr1:SNP:144 A G 273 low_coverage;off_target DP=11;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4846210,g1000:0.23103; 1 10327407 chr1:SNP:145 A T 1063 off_target DP=42;DP4=1,0,25,16;AD=1,41;TYPE=SNP;DBXREF=dbSNP:rs12141246,g1000:0.380591,esp5400:0.370143,ExAC:0.347; 1 10328338 chr1:SNP:146 C T 1685 off_target DP=66;DP4=0,0,28,38;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs1339458,g1000:0.253994,esp5400:0.248187,ExAC:0.274,clinvar:rs1339458|2; 1 10332102 chr1:SNP:147 C T 298 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs17034643,g1000:0.331669; 1 10335315 chr1:SNP:148 G A 352 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6685773,g1000:0.998403; 1 10342352 chr1:SNP:149 C T 205 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs3748575,g1000:0.535743,ExAC:0.477; 1 10342629 chr1:SNP:150 G A 332 low_coverage;off_target DP=13;DP4=0,0,6,7;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs3748576,g1000:0.71266,esp5400:0.711192,ExAC:0.643; 1 10355834 chr1:SNP:151 C T 1368 . DP=52;DP4=0,0,23,29;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs3753037,g1000:0.263978,esp5400:0.2599,ExAC:0.278,clinvar:rs3753037|2; 1 10356562 chr1:SNP:152 C A 1551 off_target DP=59;DP4=0,0,43,16;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs2275424,g1000:0.23103; 1 10394536 chr1:SNP:153 C G 1158 off_target DP=44;DP4=0,0,34,10;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2276100,g1000:0.333866,esp5400:0.327477,ExAC:0.322; 1 10403482 chr1:SNP:154 G A 174 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs1556916,g1000:0.340455; 1 10420918 chr1:SNP:155 G A 407 low_coverage;off_target DP=15;DP4=0,0,14,1;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs3748578,g1000:0.290935; 1 10420937 chr1:SNP:156 C T 527 off_target DP=20;DP4=0,0,19,1;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs3748579,g1000:0.334065,esp5400:0.327198,ExAC:0.321; 1 10428452 chr1:SNP:157 G A 1002 off_target DP=37;DP4=0,0,26,11;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs12130563,g1000:0.334065; 1 10431158 chr1:SNP:158 T C 1083 off_target DP=40;DP4=0,0,25,15;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs17411502,g1000:0.249002,esp5400:0.251069,ExAC:0.277; 1 10435170 chr1:SNP:159 T C 322 low_coverage;off_target DP=13;DP4=0,0,8,5;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs11121551,g1000:0.341054; 1 10435324 chr1:SNP:160 C A 1158 . DP=44;DP4=0,0,24,20;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs11121552,g1000:0.231629,esp5400:0.229411,ExAC:0.272,clinvar:rs11121552|255; 1 10459779 chr1:SNP:161 G A 1874 off_target DP=73;DP4=1,0,31,41;AD=1,72;TYPE=SNP;DBXREF=dbSNP:rs3737155,g1000:0.334465,esp5400:0.328779,ExAC:0.322; 1 10460485 chr1:SNP:162 T C 10000 . DP=134;DP4=0,0,81,53;AD=0,134;TYPE=SNP;DBXREF=dbSNP:rs1049887,g1000:0.233826,esp5400:0.232106,ExAC:0.274,MutationTaster:1; 1 10473196 chr1:SNP:163 C T 2678 . DP=102;DP4=0,0,53,49;AD=0,102;TYPE=SNP;DBXREF=dbSNP:rs2229687,g1000:0.335064,esp5400:0.328872,ExAC:0.323; 1 10479635 chr1:SNP:164 C G 2961 off_target DP=118;DP4=0,1,57,60;AD=1,117;TYPE=SNP;DBXREF=dbSNP:rs2298570,g1000:0.517772,esp5400:0.54248,ExAC:0.475; 1 10479678 chr1:SNP:165 G A 3050 . DP=118;DP4=0,0,60,57;AD=0,117;TYPE=SNP;DBXREF=dbSNP:rs1889309,g1000:0.25,esp5400:0.251627,ExAC:0.278; 1 10596341 chr1:SNP:166 C T 1940 . DP=75;DP4=1,1,13,60;AD=2,73;TYPE=SNP;DBXREF=dbSNP:rs12375,g1000:0.228035,esp5400:0.249489,ExAC:0.284,clinvar:rs12375|2; 1 10596388 chr1:SNP:167 A G 792 off_target DP=31;DP4=0,0,3,28;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2480779,g1000:0.952676,esp5400:0.959286,ExAC:0.987; 1 11082054 chr1:INDEL:16 AG A 474 low_coverage;off_target DP=18;DP4=0,0,15,3;AD=0,18;TYPE=INDEL;DBXREF=dbSNP:rs3835416,g1000:0.584465; 1 11087524 chr1:SNP:168 G A 2861 . DP=109;DP4=0,0,64,45;AD=0,109;TYPE=SNP;DBXREF=dbSNP:rs1782455,g1000:0.6875,esp5400:0.669455,ExAC:0.785; 1 11087835 chr1:SNP:169 T C 585 off_target DP=21;DP4=0,0,0,21;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1782454,g1000:0.83726; 1 11090916 chr1:SNP:170 C A 2573 . DP=98;DP4=0,0,57,41;AD=0,98;TYPE=SNP;DBXREF=dbSNP:rs12711521,g1000:0.58127,esp5400:0.622606,ExAC:0.735,MutationTaster:1; 1 11095039 chr1:SNP:171 C T 1164 off_target DP=43;DP4=0,0,10,33;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs6695096,g1000:0.842452; 1 11105106 chr1:SNP:172 C T 353 off_target DP=53;DP4=8,25,6,14;AD=33,20;TYPE=SNP;DBXREF=dbSNP:rs2273345,g1000:0.577476; 1 11105122 chr1:SNP:173 C T 195 off_target DP=41;DP4=8,22,3,8;AD=30,11;TYPE=SNP;DBXREF=dbSNP:rs2273344,g1000:0.84345; 1 11851118 chr1:SNP:174 A G 290 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs7518348,g1000:0.902157; 1 11852300 chr1:SNP:175 C T 152 low_coverage;off_target DP=18;DP4=8,2,6,2;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs1476413,g1000:0.251198,esp5400:0.220301,ExAC:0.268; 1 11854457 chr1:SNP:176 G A 1971 . DP=75;DP4=0,0,42,33;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs4846051,g1000:0.902955,esp5400:0.889571,ExAC:0.97,clinvar:rs4846051|2; 1 11854476 chr1:SNP:177 T G 618 . DP=70;DP4=17,22,16,15;AD=39,31;TYPE=SNP;DBXREF=dbSNP:rs1801131,g1000:0.249401,esp5400:0.255438,ExAC:0.295,clinvar:rs1801131|2|255|0|1|6,MutationTaster:1; 1 11854755 chr1:SNP:178 G A 138 low_coverage;off_target DP=14;DP4=6,1,3,4;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs1994798,g1000:0.579273,esp5400:0.538669,ExAC:0.595; 1 11856378 chr1:SNP:179 G A 741 . DP=72;DP4=19,17,12,24;AD=36,36;TYPE=SNP;DBXREF=dbSNP:rs1801133,g1000:0.245407,esp5400:0.271891,ExAC:0.304,clinvar:rs1801133|2|0|1|6|6,MutationTaster:1; 1 11917620 chr1:INDEL:17 TAAAAAAA TAAAAAAAA 201 off_target DP=26;DP4=1,0,18,6;AD=1,24;TYPE=INDEL;DBXREF=dbSNP:rs35458601,g1000:0.29373; 1 12012809 chr1:SNP:180 G A 442 off_target DP=40;DP4=4,15,5,16;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs181015965,g1000:0.000798722,esp5400:0.000651,ExAC:0.0004695; 1 12020824 chr1:SNP:181 C T 397 . DP=41;DP4=11,10,8,12;AD=21,20;TYPE=SNP;DBXREF=dbSNP:rs377080927,esp5400:9.3e-05,ExAC:0.0001071,MutationTaster:1; 1 12056440 chr1:SNP:182 C T 189 off_target DP=21;DP4=0,12,0,9;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs2236056,g1000:0.653554; 1 12062205 chr1:SNP:183 A G 217 low_coverage;off_target DP=18;DP4=2,5,2,8;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs2236057,g1000:0.657947,esp5400:0.64882,ExAC:0.66; 1 12071680 chr1:SNP:184 A G 374 off_target DP=28;DP4=1,10,3,14;AD=11,17;TYPE=SNP;DBXREF=dbSNP:rs1042842,g1000:0.732428,esp5400:0.686456; 1 12082926 chr1:SNP:185 A G 765 . DP=94;DP4=28,28,21,17;AD=56,38;TYPE=SNP;DBXREF=dbSNP:rs2295283,g1000:0.669329,esp5400:0.738892,ExAC:0.684,MutationTaster:0; 1 12091210 chr1:SNP:186 T C 236 low_coverage;off_target DP=18;DP4=7,0,11,0;AD=7,11;TYPE=SNP;DBXREF=dbSNP:rs946461,g1000:0.707867; 1 12248942 chr1:SNP:187 A G 621 . DP=68;DP4=12,25,12,18;AD=37,30;TYPE=SNP;DBXREF=dbSNP:rs945439,g1000:0.199281,esp5400:0.236705,ExAC:0.224; 1 12248965 chr1:SNP:188 A G 637 off_target DP=63;DP4=4,28,9,22;AD=32,31;TYPE=SNP;DBXREF=dbSNP:rs945438,g1000:0.198682,esp5400:0.232986,ExAC:0.222; 1 12249020 chr1:SNP:189 C T 134 off_target DP=21;DP4=1,13,1,6;AD=14,7;TYPE=SNP;DBXREF=dbSNP:rs1815530,g1000:0.189497; 1 12249031 chr1:SNP:190 A G 488 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs1201157,g1000:0.611422; 1 12251765 chr1:SNP:191 T G 524 off_target DP=50;DP4=22,2,19,7;AD=24,26;TYPE=SNP;DBXREF=dbSNP:rs498906,g1000:0.19389,ExAC:0.215; 1 12251808 chr1:SNP:192 T G 2823 off_target DP=111;DP4=1,1,61,48;AD=2,109;TYPE=SNP;DBXREF=dbSNP:rs653667,g1000:0.303714,esp5400:0.327198,ExAC:0.337; 1 12252892 chr1:SNP:193 C T 704 off_target DP=67;DP4=22,11,23,11;AD=33,34;TYPE=SNP;DBXREF=dbSNP:rs1768642,g1000:0.190895,esp5400:0.218285,ExAC:0.208; 1 12252955 chr1:SNP:194 T G 898 . DP=90;DP4=26,20,23,21;AD=46,44;TYPE=SNP;DBXREF=dbSNP:rs1061622,g1000:0.194688,esp5400:0.231735,ExAC:0.224,MutationTaster:0; 1 12261972 chr1:SNP:195 A G 226 off_target DP=20;DP4=7,3,8,2;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs5746051,g1000:0.13139,esp5400:0.127526; 1 14059395 chr1:SNP:196 T C 122 low_coverage;off_target DP=17;DP4=2,9,2,4;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs33969518,g1000:0.167133,esp5400:0.162386,ExAC:0.22; 1 14099763 chr1:SNP:197 C T 515 low_coverage;off_target DP=19;DP4=0,0,5,14;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs10803426,g1000:0.317692,esp5400:0.311379; 1 14143003 chr1:SNP:198 A G 2678 . DP=102;DP4=0,0,53,49;AD=0,102;TYPE=SNP;DBXREF=dbSNP:rs1046331,g1000:0.821286,esp5400:0.87572,ExAC:0.825,MutationTaster:0; 1 14149505 chr1:SNP:199 C A 461 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2697970,g1000:0.714257; 1 14149601 chr1:SNP:200 C T 2259 off_target DP=86;DP4=0,0,54,32;AD=0,86;TYPE=SNP;DBXREF=dbSNP:rs2697969,g1000:0.714257,esp5400:0.750773; 1 14149622 chr1:SNP:201 T C 2678 off_target DP=102;DP4=0,0,57,45;AD=0,102;TYPE=SNP;DBXREF=dbSNP:rs2697968,g1000:0.714657,esp5400:0.746292,ExAC:0.723; 1 15768997 chr1:SNP:202 C T 854 . DP=97;DP4=29,25,26,17;AD=54,43;TYPE=SNP;DBXREF=dbSNP:rs41307798,g1000:0.0329473,esp5400:0.026027,ExAC:0.034,clinvar:rs41307798|2,MutationTaster:1; 1 15769876 chr1:INDEL:18 GCC GCCC 683 off_target DP=63;DP4=1,0,41,17;AD=1,58;TYPE=INDEL;DBXREF=dbSNP:rs35149641,g1000:1,ExAC:1; 1 15770101 chr1:SNP:203 C A 190 low_coverage;off_target DP=14;DP4=0,5,2,7;AD=5,9;TYPE=SNP;DBXREF=dbSNP:rs10803384,g1000:0.171326,esp5400:0.227366,ExAC:0.199; 1 15772057 chr1:SNP:204 G T 289 off_target DP=24;DP4=10,1,12,1;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs10927786,g1000:0.357628,esp5400:0.370722,ExAC:0.362; 1 15834540 chr1:SNP:205 T C 350 low_coverage;off_target DP=19;DP4=0,5,0,14;AD=5,14;TYPE=SNP;DBXREF=dbSNP:rs34645131,g1000:0.00159744; 1 16096893 chr1:SNP:206 C T 988 . DP=79;DP4=25,8,39,7;AD=33,46;TYPE=SNP;DBXREF=dbSNP:rs12146078,g1000:0.193291,esp5400:0.179773,ExAC:0.222; 1 16096934 chr1:SNP:207 C T 1197 . DP=113;DP4=38,17,45,13;AD=55,58;TYPE=SNP;DBXREF=dbSNP:rs10927851,g1000:0.642372,esp5400:0.610708,ExAC:0.681,MutationTaster:0.975; 1 16101217 chr1:SNP:208 C T 1804 . DP=254;DP4=83,75,55,41;AD=158,96;TYPE=SNP;DBXREF=dbSNP:rs41268337,g1000:0.0553115,esp5400:0.081614,ExAC:0.076; 1 16342237 chr1:SNP:209 A G 1402 . DP=124;DP4=29,28,30,37;AD=57,67;TYPE=SNP;DBXREF=dbSNP:rs1739840,g1000:0.652556,esp5400:0.620491,ExAC:0.586; 1 16342350 chr1:SNP:210 A T 208 off_target DP=24;DP4=0,14,0,10;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs761759,g1000:0.652756; 1 16342419 chr1:SNP:211 A G 194 off_target DP=22;DP4=0,13,0,9;AD=13,9;TYPE=SNP;DBXREF=dbSNP:rs761760,g1000:0.652756; 1 16344360 chr1:SNP:212 A G 1465 . DP=145;DP4=34,37,39,35;AD=71,74;TYPE=SNP;DBXREF=dbSNP:rs732286,g1000:0.648962,esp5400:0.614655,ExAC:0.586; 1 16344402 chr1:SNP:213 G A 1177 . DP=129;DP4=34,36,22,37;AD=70,59;TYPE=SNP;DBXREF=dbSNP:rs945416,g1000:0.648962,esp5400:0.613869,ExAC:0.587; 1 16344494 chr1:SNP:214 G A 605 off_target DP=64;DP4=8,27,3,26;AD=35,29;TYPE=SNP;DBXREF=dbSNP:rs1572381,g1000:0.648363,esp5400:0.613564,ExAC:0.583,MutationTaster:1; 1 16351137 chr1:SNP:215 C G 261 off_target DP=24;DP4=10,1,12,0;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs9442190,g1000:0.642772; 1 16351275 chr1:SNP:216 A G 1893 . DP=170;DP4=44,35,49,42;AD=79,91;TYPE=SNP;DBXREF=dbSNP:rs10927887,g1000:0.642971,esp5400:0.599926,ExAC:0.563,MutationTaster:0.01; 1 16352492 chr1:SNP:217 G A 164 low_coverage;off_target DP=16;DP4=8,0,8,0;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs11584665,g1000:0.598243; 1 16354280 chr1:SNP:218 G C 103 low_coverage;off_target DP=16;DP4=9,2,4,1;AD=11,5;TYPE=SNP;DBXREF=dbSNP:rs10927889,g1000:0.642372,esp5400:0.597203,ExAC:0.564; 1 16356501 chr1:SNP:219 G A 1448 . DP=143;DP4=39,33,30,41;AD=72,71;TYPE=SNP;DBXREF=dbSNP:rs1805152,g1000:0.648562,esp5400:0.599368,ExAC:0.56,MutationTaster:0.016; 1 16356583 chr1:SNP:220 C T 882 off_target DP=78;DP4=8,27,11,31;AD=35,42;TYPE=SNP;DBXREF=dbSNP:rs3737218,g1000:0.418331,esp5400:0.362005,ExAC:0.381; 1 16358148 chr1:SNP:221 T C 218 off_target DP=35;DP4=18,5,11,1;AD=23,12;TYPE=SNP;DBXREF=dbSNP:rs2015509,g1000:0.749201; 1 16358520 chr1:SNP:222 T C 104 low_coverage;off_target DP=10;DP4=3,2,2,3;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs12131197,g1000:0.204673; 1 16358685 chr1:SNP:223 C G 859 off_target DP=95;DP4=25,27,22,21;AD=52,43;TYPE=SNP;DBXREF=dbSNP:rs6669935,g1000:0.686701,esp5400:0.593523,ExAC:0.605; 1 16358932 chr1:SNP:224 T C 857 . DP=129;DP4=43,38,20,26;AD=81,46;TYPE=SNP;DBXREF=dbSNP:rs10803407,g1000:0.749002,esp5400:0.694367,ExAC:0.688; 1 16359051 chr1:SNP:225 C A 194 off_target DP=42;DP4=12,19,2,9;AD=31,11;TYPE=SNP;DBXREF=dbSNP:rs10927892,g1000:0.648163,esp5400:0.164715,ExAC:0.561; 1 16359052 chr1:SNP:226 A G 1158 off_target DP=44;DP4=0,0,18,26;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs10927893,g1000:0.763978,esp5400:0.858617,ExAC:0.923; 1 16359123 chr1:SNP:227 A G 126 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs9442217,g1000:0.749002; 1 16372911 chr1:SNP:228 G A 331 off_target DP=33;DP4=17,0,16,0;AD=17,16;TYPE=SNP;DBXREF=dbSNP:rs2014848,g1000:0.739816; 1 16372971 chr1:SNP:229 G A 838 off_target DP=75;DP4=24,11,27,13;AD=35,40;TYPE=SNP;DBXREF=dbSNP:rs2014841,g1000:0.740415; 1 16373124 chr1:SNP:230 A G 1173 . DP=141;DP4=34,47,27,33;AD=81,60;TYPE=SNP;DBXREF=dbSNP:rs5257,g1000:0.740415,esp5400:0.671128,ExAC:0.802; 1 16373199 chr1:INDEL:19 CCTT C 602 off_target DP=63;DP4=17,18,8,20;AD=35,28;TYPE=INDEL;DBXREF=dbSNP:rs35820664,g1000:0.723442,ExAC:0.775; 1 16373282 chr1:SNP:231 A G 136 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2095540,g1000:0.740016; 1 16374330 chr1:SNP:232 A G 250 low_coverage;off_target DP=15;DP4=4,0,10,1;AD=4,11;TYPE=SNP;DBXREF=dbSNP:rs945403,g1000:0.841454; 1 16374533 chr1:SNP:233 G C 293 . DP=32;DP4=5,13,3,11;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs2014562,g1000:0.89397,esp5400:0.877487,ExAC:0.929; 1 16374994 chr1:SNP:234 C T 478 . DP=66;DP4=17,23,10,15;AD=40,25;TYPE=SNP;DBXREF=dbSNP:rs34666902,g1000:0.738618,esp5400:0.667694,ExAC:0.801; 1 16375063 chr1:SNP:235 C G 189 . DP=41;DP4=5,26,1,9;AD=31,10;TYPE=SNP;DBXREF=dbSNP:rs45612832,g1000:0.827276,esp5400:0.637665,ExAC:0.9,MutationTaster:0.971; 1 16375064 chr1:SNP:236 A C 201 . DP=37;DP4=6,20,2,9;AD=26,11;TYPE=SNP;DBXREF=dbSNP:rs45575235,g1000:0.827276,esp5400:0.632367,ExAC:0.9; 1 16375838 chr1:SNP:237 C G 113 low_coverage;off_target DP=11;DP4=1,5,1,4;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs7545067; 1 16376191 chr1:SNP:238 C T 206 . DP=25;DP4=4,11,6,4;AD=15,10;TYPE=SNP;DBXREF=dbSNP:rs7367494,g1000:0.829872,esp5400:0.811028,ExAC:0.909,MutationTaster:0; 1 16376230 chr1:INDEL:20 A AT 226 off_target DP=21;DP4=5,5,6,5;AD=10,11;TYPE=INDEL;DBXREF=dbSNP:rs59006537; 1 16376232 chr1:SNP:239 A T 209 low_coverage;off_target DP=18;DP4=4,4,5,5;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs59924562,g1000:0.754193,esp5400:0.643962,ExAC:0.883; 1 16376278 chr1:SNP:240 G A 395 off_target DP=30;DP4=8,3,10,8;AD=11,18;TYPE=SNP;DBXREF=dbSNP:rs7365182,g1000:0.827875,esp5400:0.810838,ExAC:0.911; 1 16376319 chr1:SNP:241 T C 582 . DP=55;DP4=18,9,15,13;AD=27,28;TYPE=SNP;DBXREF=dbSNP:rs7368151,g1000:0.830072,esp5400:0.813441,ExAC:0.911; 1 16376458 chr1:SNP:242 T C 259 off_target DP=27;DP4=2,12,2,11;AD=14,13;TYPE=SNP;DBXREF=dbSNP:rs7368166,g1000:0.830072,esp5400:0.80199,ExAC:0.908; 1 16376494 chr1:SNP:243 C G 118 low_coverage;off_target DP=19;DP4=1,12,0,6;AD=13,6;TYPE=SNP;DBXREF=dbSNP:rs72651918,g1000:0.166933; 1 16378649 chr1:SNP:244 C G 647 off_target DP=68;DP4=22,14,24,7;AD=36,31;TYPE=SNP;DBXREF=dbSNP:rs2297726,g1000:0.16254,esp5400:0.137835,ExAC:0.17; 1 16379005 chr1:SNP:245 C T 179 low_coverage;off_target DP=17;DP4=0,8,0,9;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs557834124,g1000:0.000399361; 1 16379008 chr1:SNP:246 C T 164 low_coverage;off_target DP=18;DP4=0,10,0,8;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs2050522,g1000:0.749201; 1 16380196 chr1:SNP:247 T C 2136 . DP=79;DP4=0,0,44,35;AD=0,79;TYPE=SNP;DBXREF=dbSNP:rs5253,g1000:0.838259,esp5400:0.888972,ExAC:0.931,MutationTaster:0; 1 16380243 chr1:SNP:248 A G 1336 . DP=54;DP4=1,0,25,28;AD=1,53;TYPE=SNP;DBXREF=dbSNP:rs2275166,g1000:0.701677,esp5400:0.703662,ExAC:0.658,MutationTaster:0; 1 16380252 chr1:SNP:249 C T 1417 . DP=54;DP4=1,0,22,31;AD=1,53;TYPE=SNP;DBXREF=dbSNP:rs2275167,g1000:0.613618,esp5400:0.615356,ExAC:0.621; 1 16380337 chr1:SNP:250 G A 190 low_coverage;off_target DP=18;DP4=0,9,0,9;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs41269173,g1000:0.0846645; 1 16380393 chr1:SNP:251 G A 105 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs35708002,g1000:0.0942492; 1 16380403 chr1:SNP:252 A T 241 low_coverage;off_target DP=10;DP4=0,1,0,9;AD=1,9;TYPE=SNP;DBXREF=dbSNP:rs2275168,g1000:0.52476; 1 16381792 chr1:SNP:253 T A 162 low_coverage;off_target DP=19;DP4=8,2,8,0;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs12047858,g1000:0.457867; 1 16381816 chr1:SNP:254 C T 215 off_target DP=25;DP4=11,3,11,0;AD=14,11;TYPE=SNP;DBXREF=dbSNP:rs12029508,g1000:0.457867; 1 16382086 chr1:SNP:255 C T 344 off_target DP=29;DP4=5,7,6,11;AD=12,17;TYPE=SNP;DBXREF=dbSNP:rs2297727,g1000:0.458666; 1 16382827 chr1:INDEL:21 CTCT C 221 off_target DP=22;DP4=9,3,9,1;AD=12,10;TYPE=INDEL;DBXREF=dbSNP:rs77508204,g1000:0.402556; 1 16382831 chr1:SNP:256 T A 143 off_target DP=22;DP4=11,3,7,1;AD=14,8;TYPE=SNP;DBXREF=dbSNP:rs61769890,g1000:0.402556; 1 16382834 chr1:SNP:257 T A 138 off_target DP=22;DP4=10,4,6,1;AD=14,7;TYPE=SNP;DBXREF=dbSNP:rs61769891,g1000:0.402756; 1 16382877 chr1:SNP:258 A G 843 off_target DP=66;DP4=9,18,24,15;AD=27,39;TYPE=SNP;DBXREF=dbSNP:rs7517792,g1000:0.784145,esp5400:0.764361,ExAC:0.793; 1 16383448 chr1:SNP:259 A C 677 off_target DP=25;DP4=0,0,12,13;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs10803415,g1000:0.900958,esp5400:0.955502,ExAC:0.939; 1 16464673 chr1:SNP:260 G A 267 . DP=22;DP4=3,7,5,7;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs2230597,g1000:0.349441,esp5400:0.388899,ExAC:0.371,clinvar:rs2230597|2; 1 16475123 chr1:SNP:261 C T 373 . DP=22;DP4=3,3,12,4;AD=6,16;TYPE=SNP;DBXREF=dbSNP:rs6678616,g1000:0.226438,esp5400:0.283231,ExAC:0.291,clinvar:rs6678616|2; 1 16475126 chr1:SNP:262 C T 473 . DP=26;DP4=2,3,15,5;AD=5,20;TYPE=SNP;DBXREF=dbSNP:rs6678618,g1000:0.226637,esp5400:0.283324,ExAC:0.291,clinvar:rs6678618|2; 1 16725818 chr1:SNP:263 A G 257 low_coverage;off_target DP=17;DP4=3,3,9,2;AD=6,11;TYPE=SNP;DBXREF=dbSNP:rs41310375,g1000:0.0788738,esp5400:0.13311,ExAC:0.095; 1 16726036 chr1:SNP:264 A G 704 off_target DP=58;DP4=10,16,11,21;AD=26,32;TYPE=SNP;DBXREF=dbSNP:rs61769432,g1000:0.0395367,esp5400:0.095743,ExAC:0.084; 1 16727305 chr1:INDEL:22 G GCTT 1663 . DP=207;DP4=66,52,42,39;AD=118,81;TYPE=INDEL;DBXREF=dbSNP:rs139527123,g1000:0.0992412,ExAC:0.102; 1 16730413 chr1:SNP:265 C T 514 off_target DP=51;DP4=12,14,11,14;AD=26,25;TYPE=SNP;DBXREF=dbSNP:rs61769436,g1000:0.0373403,esp5400:0.093698,ExAC:0.081; 1 16731510 chr1:SNP:266 C G 1190 . DP=112;DP4=28,28,30,26;AD=56,56;TYPE=SNP;DBXREF=dbSNP:rs525409,g1000:0.280152,esp5400:0.225878,ExAC:0.274,MutationTaster:1; 1 16731646 chr1:SNP:267 T C 433 low_coverage;off_target DP=19;DP4=0,0,3,15;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs3106498,g1000:0.961062,esp5400:0.960022,ExAC:0.989; 1 16731647 chr1:SNP:268 G C 228 low_coverage;off_target DP=18;DP4=1,6,2,9;AD=7,11;TYPE=SNP;DBXREF=dbSNP:rs526481,g1000:0.462859,esp5400:0.273108,ExAC:0.497; 1 16731661 chr1:SNP:269 T C 171 low_coverage;off_target DP=12;DP4=0,4,1,7;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs526513,g1000:0.463059; 1 16736132 chr1:SNP:270 T C 588 . DP=62;DP4=19,14,17,12;AD=33,29;TYPE=SNP;DBXREF=dbSNP:rs4661746,g1000:0.152756,esp5400:0.232013,ExAC:0.245,MutationTaster:0; 1 16736546 chr1:SNP:271 C T 694 . DP=54;DP4=5,17,13,19;AD=22,32;TYPE=SNP;DBXREF=dbSNP:rs10907226,g1000:0.620607,esp5400:0.643837,ExAC:0.614; 1 16891074 chr1:SNP:272 T C 109 low_coverage;off_target DP=11;DP4=6,0,4,1;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs4111896; 1 16891243 chr1:SNP:273 C G 614 off_target DP=29;DP4=3,1,22,3;AD=4,25;TYPE=SNP;DBXREF=dbSNP:rs2289553; 1 16891333 chr1:SNP:274 C T 180 low_variant_fraction DP=92;DP4=56,24,8,4;AD=80,12;TYPE=SNP;DBXREF=dbSNP:rs3872309,esp5400:0.027977; 1 16891365 chr1:SNP:275 G A 166 low_variant_fraction DP=73;DP4=23,35,7,5;AD=58,12;TYPE=SNP;DBXREF=dbSNP:rs2289552,esp5400:0.071891,ExAC:0.172; 1 16891485 chr1:SNP:276 C T 195 off_target DP=36;DP4=5,21,2,8;AD=26,10;TYPE=SNP;DBXREF=dbSNP:rs2289551; 1 16893721 chr1:SNP:277 A C 148 . DP=45;DP4=18,18,6,3;AD=36,9;TYPE=SNP;DBXREF=dbSNP:rs201533998,esp5400:0.021379,ExAC:0.134; 1 16895634 chr1:SNP:278 T G 528 . DP=53;DP4=18,10,16,9;AD=28,25;TYPE=SNP;DBXREF=dbSNP:rs849614,esp5400:0.470658; 1 16899515 chr1:SNP:279 A G 116 off_target DP=35;DP4=28,0,7,0;AD=28,7;TYPE=SNP;DBXREF=dbSNP:rs202229946; 1 16899669 chr1:SNP:280 C T 194 low_variant_fraction DP=83;DP4=27,42,7,7;AD=69,14;TYPE=SNP;DBXREF=dbSNP:rs373211172,esp5400:0.144043,ExAC:0.054; 1 16902894 chr1:SNP:281 A G 415 . DP=50;DP4=14,15,9,12;AD=29,21;TYPE=SNP;DBXREF=dbSNP:rs28453011,g1000:0.68151,esp5400:0.279799; 1 16903150 chr1:SNP:282 T C 174 low_coverage;off_target DP=9;DP4=1,1,0,7;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs61772340,g1000:0.953674; 1 16903736 chr1:SNP:283 A C 144 low_coverage;off_target DP=10;DP4=3,1,5,1;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs4989435; 1 16903912 chr1:SNP:284 T A 162 low_variant_fraction DP=52;DP4=16,26,2,8;AD=42,10;TYPE=SNP;DBXREF=dbSNP:rs61772344,esp5400:0.653674; 1 16907303 chr1:SNP:285 C T 333 . DP=49;DP4=21,11,14,3;AD=32,17;TYPE=SNP;DBXREF=dbSNP:rs681623,esp5400:0.000465; 1 16907328 chr1:SNP:286 G T 213 . DP=52;DP4=23,17,3,9;AD=40,12;TYPE=SNP;DBXREF=dbSNP:rs4661383,esp5400:0.512642; 1 16909052 chr1:SNP:287 C T 150 low_coverage DP=19;DP4=8,3,5,3;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs3897177,g1000:0.82528,esp5400:0.94665; 1 16909246 chr1:SNP:288 T C 171 . DP=27;DP4=7,11,4,5;AD=18,9;TYPE=SNP;DBXREF=dbSNP:rs373061760,esp5400:0.012579; 1 16910064 chr1:SNP:289 A G 137 off_target DP=30;DP4=14,8,8,0;AD=22,8;TYPE=SNP;DBXREF=dbSNP:rs2023254,g1000:0.489617,ExAC:0.0001373; 1 16910249 chr1:SNP:290 T C 285 off_target DP=42;DP4=9,18,3,12;AD=27,15;TYPE=SNP;DBXREF=dbSNP:rs112206996; 1 16913677 chr1:SNP:291 T C 260 . DP=37;DP4=14,9,3,11;AD=23,14;TYPE=SNP;DBXREF=dbSNP:rs71263230,g1000:0.245807,esp5400:0.042952,ExAC:0.087; 1 16915357 chr1:SNP:292 C T 293 low_coverage DP=16;DP4=2,2,9,3;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs199859875,esp5400:0.158708; 1 16915434 chr1:SNP:293 T C 120 . DP=31;DP4=13,11,6,1;AD=24,7;TYPE=SNP;DBXREF=dbSNP:rs202129231,esp5400:0.001843,ExAC:0.001969; 1 16916358 chr1:SNP:294 G C 426 off_target DP=29;DP4=6,3,16,4;AD=9,20;TYPE=SNP;DBXREF=dbSNP:rs3981774,g1000:0.373602,esp5400:0.11938,ExAC:0.219; 1 16916514 chr1:SNP:295 C T 483 off_target DP=64;DP4=16,23,10,15;AD=39,25;TYPE=SNP;DBXREF=dbSNP:rs200002040,esp5400:0.060084; 1 16916515 chr1:SNP:296 G A 214 off_target DP=62;DP4=18,31,6,7;AD=49,13;TYPE=SNP;DBXREF=dbSNP:rs61773622,esp5400:0.09116; 1 16916603 chr1:SNP:297 C A 222 low_coverage;off_target DP=13;DP4=0,4,0,9;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs11583443,g1000:0.772364; 1 16918502 chr1:SNP:298 A G 290 low_coverage DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs3925698,g1000:0.493011; 1 17312743 chr1:SNP:299 C T 853 . DP=34;DP4=0,0,19,14;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs3170740,g1000:0.33127,esp5400:0.419925,ExAC:0.455,clinvar:rs3170740|2,MutationTaster:0.969; 1 17313157 chr1:SNP:300 G A 474 low_coverage;off_target DP=18;DP4=0,0,4,14;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2076605,g1000:0.346845,esp5400:0.418592,ExAC:0.439; 1 17313343 chr1:SNP:301 G A 1710 . DP=67;DP4=0,0,32,35;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs9435659,g1000:0.338458,esp5400:0.413132,ExAC:0.459,clinvar:rs9435659|2; 1 17313654 chr1:SNP:302 C T 1866 . DP=71;DP4=0,0,36,35;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs761421,g1000:0.346246,esp5400:0.42048,ExAC:0.46,clinvar:rs761421|2; 1 17314942 chr1:SNP:303 G A 1691 . DP=66;DP4=0,1,18,47;AD=1,65;TYPE=SNP;DBXREF=dbSNP:rs9435662,g1000:0.338658,esp5400:0.41188,ExAC:0.458,clinvar:rs9435662|2; 1 17319011 chr1:SNP:304 G A 1578 . DP=60;DP4=0,0,26,34;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs2076603,g1000:0.448482,esp5400:0.567113,ExAC:0.554,clinvar:rs2076603|2; 1 17323449 chr1:SNP:305 T C 248 low_coverage;off_target DP=10;DP4=0,0,8,2;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs9435736,g1000:0.792532; 1 17359676 chr1:SNP:306 C A 895 off_target DP=34;DP4=0,0,12,22;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1022580,g1000:0.959065,esp5400:0.952222,ExAC:0.971,clinvar:rs1022580|2; 1 17371152 chr1:SNP:307 T C 281 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs12073028,g1000:0.475439; 1 17371494 chr1:SNP:308 C T 271 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs9435745,g1000:0.345647; 1 17380497 chr1:SNP:309 G T 623 . DP=23;DP4=0,0,12,11;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2746462,g1000:0.957069,esp5400:0.951739,ExAC:0.97,clinvar:rs2746462|2|2; 1 19018405 chr1:SNP:310 G A 293 . DP=44;DP4=11,18,4,11;AD=29,15;TYPE=SNP;DBXREF=dbSNP:rs2076020,g1000:0.101038,esp5400:0.040078,ExAC:0.083; 1 19018432 chr1:SNP:311 A C 198 . DP=39;DP4=8,20,1,10;AD=28,11;TYPE=SNP;DBXREF=dbSNP:rs2076019,g1000:0.1248,esp5400:0.055442,ExAC:0.091; 1 19027239 chr1:SNP:312 A G 901 . DP=59;DP4=4,14,14,26;AD=18,40;TYPE=SNP;DBXREF=dbSNP:rs2743201,g1000:0.488618,esp5400:0.373838,ExAC:0.367; 1 19175846 chr1:SNP:313 T C 940 . DP=85;DP4=22,18,28,17;AD=40,45;TYPE=SNP;DBXREF=dbSNP:rs28374389,g1000:0.125998,esp5400:0.186652,ExAC:0.175,MutationTaster:0; 1 19186129 chr1:SNP:314 G C 1191 . DP=44;DP4=0,0,10,34;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs9701796,g1000:0.797923,esp5400:0.792619,ExAC:0.78,MutationTaster:0; 1 19201928 chr1:SNP:315 C T 1299 . DP=48;DP4=0,0,22,26;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs2230709,g1000:0.0479233,esp5400:0.110522,ExAC:0.104,MutationTaster:1; 1 19202770 chr1:SNP:316 T C 380 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs7550822,g1000:0.919529,esp5400:0.91346,ExAC:0.961; 1 19203131 chr1:SNP:317 C A 253 low_coverage;off_target DP=12;DP4=0,2,0,10;AD=2,10;TYPE=SNP;DBXREF=dbSNP:rs6664619,g1000:0.314097; 1 19203997 chr1:SNP:318 C G 2109 . DP=78;DP4=0,0,38,40;AD=0,78;TYPE=SNP;DBXREF=dbSNP:rs2230705,g1000:0.641573,esp5400:0.711124,ExAC:0.683; 1 19204173 chr1:SNP:319 A G 230 low_coverage;off_target DP=9;DP4=0,0,1,8;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs6426814,g1000:0.828874; 1 19205672 chr1:SNP:320 T G 281 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs28497538,g1000:0.435104; 1 19208145 chr1:INDEL:23 G GGGTTGCCT 296 low_coverage;off_target DP=12;DP4=0,0,10,1;AD=0,11;TYPE=INDEL;DBXREF=dbSNP:rs112548638,g1000:0.983027; 1 19209543 chr1:SNP:321 A G 579 off_target DP=22;DP4=0,0,19,3;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs6426611,g1000:0.968051; 1 19210018 chr1:SNP:322 G A 332 low_coverage;off_target DP=15;DP4=0,2,0,13;AD=2,13;TYPE=SNP;DBXREF=dbSNP:rs28508407,g1000:0.320687; 1 19215834 chr1:SNP:323 T C 527 off_target DP=20;DP4=0,0,12,8;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs941495,g1000:0.984425,esp5400:0.973044,ExAC:0.951; 1 19609254 chr1:SNP:324 T C 1788 . DP=68;DP4=0,0,38,30;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs1738025,g1000:0.83147,esp5400:0.795721,ExAC:0.827,MutationTaster:0; 1 19609522 chr1:SNP:325 G A 298 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs7512902,g1000:0.746406; 1 19611241 chr1:SNP:326 T C 2914 . DP=111;DP4=0,0,56,55;AD=0,111;TYPE=SNP;DBXREF=dbSNP:rs1738023,g1000:0.807708,esp5400:0.770833,ExAC:0.825,MutationTaster:0; 1 19611410 chr1:SNP:327 C G 895 off_target DP=34;DP4=0,0,23,11;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1968022; 1 19612249 chr1:SNP:328 G A 271 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs9660883,g1000:0.939696; 1 19612477 chr1:SNP:329 C T 3084 . DP=116;DP4=1,0,53,62;AD=1,115;TYPE=SNP;DBXREF=dbSNP:rs2231198,g1000:0.463259,esp5400:0.359468,ExAC:0.423,MutationTaster:0.012; 1 19638309 chr1:SNP:330 A G 560 off_target DP=43;DP4=13,5,21,4;AD=18,25;TYPE=SNP;DBXREF=dbSNP:rs2227295,g1000:0.710064,esp5400:0.767482,ExAC:0.719; 1 20005619 chr1:SNP:331 C T 359 . DP=42;DP4=13,11,9,9;AD=24,18;TYPE=SNP;DBXREF=dbSNP:rs201375470,g1000:0.000798722,esp5400:0.00028,ExAC:0.0009151,MutationTaster:0.001; 1 20304962 chr1:SNP:332 C G 543 . DP=61;DP4=18,15,15,13;AD=33,28;TYPE=SNP;DBXREF=dbSNP:rs2236771,g1000:0.0970447,esp5400:0.065811,ExAC:0.105; 1 20305065 chr1:SNP:333 C T 409 low_coverage;off_target DP=16;DP4=0,0,9,7;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs10732279,g1000:0.834265,esp5400:0.781186,ExAC:0.779; 1 20442054 chr1:SNP:334 T C 956 . DP=97;DP4=25,25,21,26;AD=50,47;TYPE=SNP;DBXREF=dbSNP:rs584367,g1000:0.769369,esp5400:0.695018,ExAC:0.661,MutationTaster:0; 1 20915701 chr1:SNP:335 A C 786 . DP=59;DP4=11,12,18,18;AD=23,36;TYPE=SNP;DBXREF=dbSNP:rs2072671,g1000:0.192692,esp5400:0.261852,ExAC:0.276,MutationTaster:1; 1 20940258 chr1:SNP:336 T A 1630 off_target DP=62;DP4=0,0,43,19;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs488991,g1000:0.97484; 1 20940463 chr1:SNP:337 T C 288 low_coverage;off_target DP=19;DP4=0,7,0,12;AD=7,12;TYPE=SNP;DBXREF=dbSNP:rs3738130,g1000:0.190895,esp5400:0.22449; 1 20944889 chr1:SNP:338 G A 346 off_target DP=37;DP4=13,7,9,8;AD=20,17;TYPE=SNP;DBXREF=dbSNP:rs77158575,g1000:0.311502; 1 20944909 chr1:SNP:339 G A 444 off_target DP=45;DP4=15,9,9,12;AD=24,21;TYPE=SNP;DBXREF=dbSNP:rs61781969,g1000:0.311502,esp5400:0.340245,ExAC:0.279; 1 20944922 chr1:SNP:340 C T 747 off_target DP=62;DP4=16,11,19,16;AD=27,35;TYPE=SNP;DBXREF=dbSNP:rs61781970,g1000:0.311502,esp5400:0.339903,ExAC:0.289; 1 20945055 chr1:SNP:341 C T 267 . DP=22;DP4=3,7,4,8;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs1048977,g1000:0.311102,esp5400:0.339933,ExAC:0.309; 1 20964328 chr1:SNP:342 A G 763 . DP=29;DP4=0,0,22,7;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs2298298,g1000:0.821885,esp5400:0.842722,ExAC:0.862,clinvar:rs2298298|2; 1 20972048 chr1:SNP:343 G A 435 low_coverage DP=17;DP4=0,0,13,4;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs3131713,g1000:0.820687,esp5400:0.842257,ExAC:0.862,clinvar:rs3131713|2; 1 20976759 chr1:SNP:344 C T 230 low_coverage;off_target DP=9;DP4=0,0,7,2;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs540038,g1000:0.836861; 1 20977000 chr1:SNP:345 A C 1671 . DP=188;DP4=80,26,60,22;AD=106,82;TYPE=SNP;DBXREF=dbSNP:rs1043424,g1000:0.300519,esp5400:0.269288,ExAC:0.297,MutationTaster:0; 1 20977221 chr1:SNP:346 A T 894 off_target DP=33;DP4=0,0,0,33;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs686658,g1000:0.834465,esp5400:0.852362,ExAC:0.861; 1 20978832 chr1:SNP:347 T C 248 low_coverage;off_target DP=10;DP4=0,0,7,3;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6893,g1000:0.82488,esp5400:0.843035,ExAC:0.849; 1 20979307 chr1:INDEL:24 GTTT GTTTT 149 off_target DP=59;DP4=19,14,5,21;AD=33,26;TYPE=INDEL;DBXREF=dbSNP:rs11428148,g1000:0.501997,ExAC:0.556; 1 20979580 chr1:SNP:348 T G 135 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs12410193,g1000:0.283946; 1 20980450 chr1:SNP:349 G T 314 off_target DP=40;DP4=12,12,7,9;AD=24,16;TYPE=SNP;DBXREF=dbSNP:rs2070660,g1000:0.170327; 1 20980880 chr1:SNP:350 G A 141 off_target DP=23;DP4=4,11,2,5;AD=15,7;TYPE=SNP;DBXREF=dbSNP:rs607254,g1000:0.357228,esp5400:0.385477,ExAC:0.266,clinvar:rs607254|2; 1 20981806 chr1:SNP:351 G A 461 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs592851,g1000:0.973043; 1 20982151 chr1:SNP:352 G A 932 off_target DP=93;DP4=26,20,25,22;AD=46,47;TYPE=SNP;DBXREF=dbSNP:rs3738140,g1000:0.153754,esp5400:0.195668,ExAC:0.182; 1 20982405 chr1:SNP:353 G A 206 low_coverage;off_target DP=19;DP4=2,7,3,7;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs3738141,g1000:0.153954; 1 20982631 chr1:SNP:354 G A 1551 . DP=59;DP4=0,0,28,31;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs4704,g1000:0.58726,esp5400:0.649284,ExAC:0.584; 1 20987873 chr1:SNP:355 G C 1705 . DP=63;DP4=0,0,16,47;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs537816,g1000:0.973043,esp5400:0.974133,ExAC:0.992,MutationTaster:0; 1 20992819 chr1:SNP:356 G C 1519 . DP=61;DP4=1,1,30,29;AD=2,59;TYPE=SNP;DBXREF=dbSNP:rs631357,g1000:0.704473,esp5400:0.788437,ExAC:0.752,MutationTaster:0; 1 20992933 chr1:SNP:357 G C 421 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs573268,g1000:0.973043; 1 21009189 chr1:SNP:358 T G 773 . DP=80;DP4=26,17,21,16;AD=43,37;TYPE=SNP;DBXREF=dbSNP:rs115257742,g1000:0.000798722,esp5400:0.001022,ExAC:0.001095,MutationTaster:0.989; 1 21024901 chr1:SNP:359 C T 2678 . DP=102;DP4=0,0,49,53;AD=0,102;TYPE=SNP;DBXREF=dbSNP:rs522496,g1000:0.596845,esp5400:0.587191,ExAC:0.62,MutationTaster:0; 1 21030815 chr1:SNP:360 C T 155 low_coverage;off_target DP=12;DP4=4,0,7,0;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs35569152,g1000:0.0155751; 1 21030902 chr1:SNP:361 G T 279 off_target DP=24;DP4=10,1,13,0;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs900039,g1000:0.24381,esp5400:0.361142,ExAC:0.344; 1 21040079 chr1:SNP:362 C A 763 off_target DP=29;DP4=0,0,10,19;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs10799661,g1000:0.751797,esp5400:0.715402,ExAC:0.707; 1 21040151 chr1:SNP:363 G A 114 low_coverage;off_target DP=8;DP4=0,3,0,5;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs10916851,g1000:0.276957; 1 21042115 chr1:SNP:364 G A 1143 . DP=100;DP4=10,34,16,40;AD=44,56;TYPE=SNP;DBXREF=dbSNP:rs34126615,g1000:0.0101837,esp5400:0.01794,ExAC:0.022; 1 21043913 chr1:SNP:365 T C 113 low_coverage;off_target DP=11;DP4=6,0,5,0;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs604659,g1000:0.670727; 1 21043926 chr1:SNP:366 T C 316 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs604645,g1000:0.769369,esp5400:0.730488,ExAC:0.712; 1 21044161 chr1:SNP:367 A G 725 . DP=26;DP4=0,0,11,15;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs601329,g1000:0.712061,esp5400:0.664814,ExAC:0.698; 1 21044219 chr1:SNP:368 A C 380 low_coverage;off_target DP=14;DP4=0,0,3,11;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs601392,g1000:0.92472,esp5400:0.881407,ExAC:0.822; 1 21551718 chr1:SNP:369 C T 238 off_target DP=20;DP4=9,0,11,0;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs71636966,g1000:0.0147764,esp5400:0.024447,ExAC:0.027; 1 21553723 chr1:SNP:370 G T 428 . DP=48;DP4=10,16,8,14;AD=26,22;TYPE=SNP;DBXREF=dbSNP:rs3026903,g1000:0.0145767,esp5400:0.024819,ExAC:0.028,clinvar:rs3026903|2; 1 21560080 chr1:SNP:371 A G 1020 . DP=102;DP4=32,20,28,22;AD=52,50;TYPE=SNP;DBXREF=dbSNP:rs2228321,g1000:0.142572,esp5400:0.149098,ExAC:0.065,clinvar:rs2228321|2; 1 21562240 chr1:SNP:372 A G 233 low_coverage;off_target DP=19;DP4=8,0,11,0;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs3026898,g1000:0.0145767; 1 21564887 chr1:SNP:373 G A 158 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs3026895,g1000:0.0129792; 1 21573722 chr1:SNP:374 G A 909 . DP=105;DP4=33,26,26,20;AD=59,46;TYPE=SNP;DBXREF=dbSNP:rs2229450,g1000:0.146765,esp5400:0.196133,ExAC:0.22,clinvar:rs2229450|2; 1 21573855 chr1:SNP:375 G A 469 . DP=40;DP4=3,15,3,19;AD=18,22;TYPE=SNP;DBXREF=dbSNP:rs1076669,g1000:0.0285543,esp5400:0.052984,ExAC:0.055,clinvar:rs1076669|2,MutationTaster:0; 1 21887290 chr1:SNP:376 C A 606 off_target DP=23;DP4=0,0,1,22;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs1767430,g1000:0.261981,esp5400:0.342677,ExAC:0.334; 1 21889635 chr1:SNP:377 T C 2312 . DP=88;DP4=0,0,50,38;AD=0,88;TYPE=SNP;DBXREF=dbSNP:rs1780316,g1000:0.929513,esp5400:0.921175,ExAC:0.945,clinvar:rs1780316|2; 1 21890464 chr1:SNP:378 A G 271 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1767428,g1000:0.986422; 1 21896767 chr1:SNP:379 C T 1023 off_target DP=101;DP4=22,29,25,25;AD=51,50;TYPE=SNP;DBXREF=dbSNP:rs1256328,g1000:0.155551,esp5400:0.138409,ExAC:0.161,clinvar:rs1256328|2; 1 21904131 chr1:SNP:380 T C 236 low_coverage DP=15;DP4=1,4,1,9;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs34605986,g1000:0.071885,esp5400:0.074802,ExAC:0.094,clinvar:rs34605986|2|2,MutationTaster:0; 1 22149935 chr1:SNP:381 T C 2513 . DP=93;DP4=0,0,51,42;AD=0,93;TYPE=SNP;DBXREF=dbSNP:rs897467,g1000:0.780351,esp5400:0.793843,ExAC:0.797; 1 22150778 chr1:SNP:382 G C 823 off_target DP=80;DP4=23,17,13,27;AD=40,40;TYPE=SNP;DBXREF=dbSNP:rs78845480,g1000:0.0291534,esp5400:0.03588,ExAC:0.041; 1 22154387 chr1:SNP:383 G A 449 . DP=57;DP4=16,18,11,12;AD=34,23;TYPE=SNP;DBXREF=dbSNP:rs11552570,g1000:0.0291534,esp5400:0.035741,ExAC:0.038; 1 22154845 chr1:SNP:384 A G 1094 . DP=74;DP4=12,13,20,29;AD=25,49;TYPE=SNP;DBXREF=dbSNP:rs2228347,g1000:0.257188,esp5400:0.254043,ExAC:0.297; 1 22154987 chr1:SNP:385 G A 163 low_coverage;off_target DP=13;DP4=1,5,2,5;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs10917052,g1000:0.2498; 1 22157545 chr1:SNP:386 G A 619 . DP=92;DP4=31,28,15,18;AD=59,33;TYPE=SNP;DBXREF=dbSNP:rs112494360,g1000:0.0289537,esp5400:0.035122,ExAC:0.037; 1 22157689 chr1:SNP:387 G A 1656 off_target DP=63;DP4=0,0,32,31;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs3736355,g1000:0.759185,esp5400:0.770547,ExAC:0.792; 1 22158157 chr1:SNP:388 A G 295 . DP=31;DP4=4,13,6,8;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs2229488,g1000:0.0832668,esp5400:0.113323,ExAC:0.073; 1 22159774 chr1:SNP:389 G A 397 . DP=62;DP4=28,12,18,4;AD=40,22;TYPE=SNP;DBXREF=dbSNP:rs2229486,g1000:0.0858626,esp5400:0.112289,ExAC:0.079; 1 22160043 chr1:SNP:390 C T 754 . DP=157;DP4=54,58,28,17;AD=112,45;TYPE=SNP;DBXREF=dbSNP:rs2229493,g1000:0.0858626,esp5400:0.112381,ExAC:0.079,MutationTaster:0; 1 22160148 chr1:SNP:391 C T 855 off_target DP=89;DP4=18,30,9,32;AD=48,41;TYPE=SNP;DBXREF=dbSNP:rs7547731,g1000:0.375,esp5400:0.369747,ExAC:0.452; 1 22162253 chr1:SNP:392 C G 139 low_coverage;off_target DP=16;DP4=0,9,0,7;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs71636991,g1000:0.0858626; 1 22163390 chr1:SNP:393 G A 1252 . DP=130;DP4=32,36,30,32;AD=68,62;TYPE=SNP;DBXREF=dbSNP:rs35444472,g1000:0.0860623,esp5400:0.107969,ExAC:0.06; 1 22165901 chr1:SNP:394 A G 300 . DP=35;DP4=13,7,10,5;AD=20,15;TYPE=SNP;DBXREF=dbSNP:rs2291826,g1000:0.346046,esp5400:0.356107,ExAC:0.287; 1 22167605 chr1:SNP:395 C T 784 . DP=86;DP4=27,21,26,12;AD=48,38;TYPE=SNP;DBXREF=dbSNP:rs2228349,g1000:0.0836661,esp5400:0.10568,ExAC:0.075,MutationTaster:0; 1 22168216 chr1:SNP:396 C T 119 low_coverage;off_target DP=12;DP4=0,6,1,5;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs7556412,g1000:0.623802,esp5400:0.605224,ExAC:0.648; 1 22168310 chr1:SNP:397 A G 207 low_coverage;off_target DP=9;DP4=0,1,2,6;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs12043008,g1000:0.269569; 1 22168801 chr1:SNP:398 T C 1139 . DP=109;DP4=29,23,25,32;AD=52,57;TYPE=SNP;DBXREF=dbSNP:rs2229491,g1000:0.0886581,esp5400:0.11517,ExAC:0.08,MutationTaster:0; 1 22168845 chr1:SNP:399 A T 678 . DP=87;DP4=20,32,11,24;AD=52,35;TYPE=SNP;DBXREF=dbSNP:rs2229489,g1000:0.034345,esp5400:0.040621,ExAC:0.05,MutationTaster:0; 1 22168982 chr1:SNP:400 T C 190 low_coverage;off_target DP=16;DP4=0,7,3,6;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs7528408,g1000:0.0864617; 1 22169186 chr1:SNP:401 A G 190 low_coverage;off_target DP=18;DP4=9,0,6,3;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs75779078,g1000:0.0345447; 1 22172458 chr1:SNP:402 T C 515 low_coverage;off_target DP=19;DP4=0,0,19,0;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs7355045,g1000:0.758586; 1 22173144 chr1:SNP:403 C T 101 low_coverage;off_target DP=11;DP4=1,5,1,4;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs34792235,g1000:0.0347444,esp5400:0.040019,ExAC:0.05; 1 22173990 chr1:SNP:404 A G 890 . DP=74;DP4=7,23,15,28;AD=30,43;TYPE=SNP;DBXREF=dbSNP:rs35917892,g1000:0.0347444,esp5400:0.041643,ExAC:0.05; 1 22174426 chr1:SNP:405 T G 987 off_target DP=100;DP4=34,14,30,20;AD=48,50;TYPE=SNP;DBXREF=dbSNP:rs2290501,g1000:0.3748,esp5400:0.389478,ExAC:0.337,MutationTaster:0; 1 22174518 chr1:SNP:406 G T 1197 . DP=122;DP4=35,28,32,27;AD=63,59;TYPE=SNP;DBXREF=dbSNP:rs12737091,g1000:0.0347444,esp5400:0.041651,ExAC:0.05; 1 22174600 chr1:SNP:407 A G 2652 off_target DP=101;DP4=0,0,33,68;AD=0,101;TYPE=SNP;DBXREF=dbSNP:rs3767138,g1000:0.761981,esp5400:0.784275,ExAC:0.775; 1 22175096 chr1:SNP:408 T C 217 low_coverage;off_target DP=16;DP4=5,1,9,1;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs34726153,g1000:0.0349441,esp5400:0.041829,ExAC:0.051; 1 22176462 chr1:SNP:409 C T 104 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs71636993,g1000:0.0349441; 1 22176769 chr1:SNP:410 C T 131 off_target DP=23;DP4=6,10,2,5;AD=16,7;TYPE=SNP;DBXREF=dbSNP:rs34719083,g1000:0.0349441; 1 22178469 chr1:SNP:411 A G 446 off_target DP=44;DP4=6,17,7,14;AD=23,21;TYPE=SNP;DBXREF=dbSNP:rs34346159,g1000:0.0347444,esp5400:0.039314,ExAC:0.049; 1 22179244 chr1:SNP:412 C T 613 . DP=72;DP4=25,16,18,13;AD=41,31;TYPE=SNP;DBXREF=dbSNP:rs35669711,g1000:0.0347444,esp5400:0.041744,ExAC:0.05,MutationTaster:0; 1 22179451 chr1:SNP:413 C T 1075 . DP=110;DP4=25,32,26,27;AD=57,53;TYPE=SNP;DBXREF=dbSNP:rs34443576,g1000:0.0345447,esp5400:0.041295,ExAC:0.05; 1 22180723 chr1:SNP:414 C T 347 . DP=32;DP4=12,3,10,7;AD=15,17;TYPE=SNP;DBXREF=dbSNP:rs12742444,g1000:0.0345447,esp5400:0.039694,ExAC:0.043; 1 22181322 chr1:SNP:415 A G 436 off_target DP=37;DP4=3,13,8,13;AD=16,21;TYPE=SNP;DBXREF=dbSNP:rs36080251,g1000:0.0345447,esp5400:0.041388,ExAC:0.05; 1 22181895 chr1:SNP:416 C T 1138 . DP=137;DP4=38,37,37,25;AD=75,62;TYPE=SNP;DBXREF=dbSNP:rs2229475,g1000:0.0347444,esp5400:0.041101,ExAC:0.05,MutationTaster:0.994; 1 22183471 chr1:SNP:417 A C 230 low_coverage;off_target DP=9;DP4=0,0,8,1;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs12024579,g1000:0.749002,esp5400:0.765198,ExAC:0.791; 1 22183739 chr1:SNP:418 A G 1394 off_target DP=53;DP4=0,0,25,28;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs2305562,g1000:0.446885,esp5400:0.504183,ExAC:0.503; 1 22186234 chr1:SNP:419 A G 1709 off_target DP=65;DP4=0,0,26,39;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs10917056,g1000:0.929313; 1 22191454 chr1:SNP:420 G A 1633 . DP=62;DP4=1,0,29,32;AD=1,61;TYPE=SNP;DBXREF=dbSNP:rs897471,g1000:0.691494,esp5400:0.694346,ExAC:0.706,MutationTaster:0.001; 1 22199081 chr1:SNP:421 A T 281 low_coverage;off_target DP=11;DP4=0,0,10,1;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2501266,g1000:0.979832,esp5400:0.980953,ExAC:0.993; 1 22199245 chr1:SNP:422 C T 371 . DP=25;DP4=5,4,5,11;AD=9,16;TYPE=SNP;DBXREF=dbSNP:rs2229482,g1000:0.42492,esp5400:0.523438,ExAC:0.543; 1 22199821 chr1:SNP:423 G A 435 low_coverage;off_target DP=17;DP4=0,0,15,2;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2454290,g1000:0.742013,esp5400:0.728853,ExAC:0.819; 1 22200067 chr1:SNP:424 A G 219 off_target DP=20;DP4=1,9,0,10;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs2247741,g1000:0.388578; 1 22200082 chr1:SNP:425 T C 461 low_coverage;off_target DP=17;DP4=0,0,1,16;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2445136,g1000:0.977636; 1 22200835 chr1:SNP:426 C G 498 off_target DP=21;DP4=1,0,15,5;AD=1,20;TYPE=SNP;DBXREF=dbSNP:rs2445135,g1000:0.978235; 1 22201331 chr1:SNP:427 C T 167 low_coverage;off_target DP=17;DP4=8,1,7,1;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs2290494,g1000:0.30012; 1 22202109 chr1:SNP:428 C T 1578 off_target DP=60;DP4=0,0,45,15;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs2501265,g1000:0.942292,esp5400:0.938464,ExAC:0.983; 1 22203259 chr1:SNP:429 A G 176 low_coverage;off_target DP=16;DP4=0,8,1,7;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs2454295,g1000:0.451677; 1 22204630 chr1:SNP:430 G A 111 low_coverage;off_target DP=18;DP4=6,6,4,2;AD=12,6;TYPE=SNP;DBXREF=dbSNP:rs7513608,g1000:0.309704,esp5400:0.188523,ExAC:0.258; 1 22205408 chr1:SNP:431 T C 256 low_coverage;off_target DP=10;DP4=0,0,8,2;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2454294,g1000:0.973642; 1 22205466 chr1:SNP:432 T C 765 off_target DP=33;DP4=0,0,17,14;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2454293,g1000:0.959465,esp5400:0.959419,ExAC:0.986; 1 22206649 chr1:SNP:433 T C 2055 . DP=76;DP4=0,0,46,30;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs989994,g1000:0.929912,esp5400:0.932608,ExAC:0.981,MutationTaster:0.998; 1 22206942 chr1:SNP:434 G A 10000 . DP=184;DP4=0,0,85,99;AD=0,184;TYPE=SNP;DBXREF=dbSNP:rs1874793,g1000:0.929912,esp5400:0.932608,ExAC:0.981; 1 22207235 chr1:SNP:435 T C 2809 . DP=107;DP4=0,0,51,56;AD=0,107;TYPE=SNP;DBXREF=dbSNP:rs1874792,g1000:0.973642,esp5400:0.973728,ExAC:0.992,MutationTaster:0; 1 22207804 chr1:INDEL:25 ACCCAGGGTGGCAG A 593 off_target DP=33;DP4=6,0,15,9;AD=6,24;TYPE=INDEL;DBXREF=dbSNP:rs139046040,g1000:0.959665; 1 22208030 chr1:SNP:436 C T 271 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs921847,g1000:0.925919,esp5400:0.924335,ExAC:0.969; 1 22211217 chr1:SNP:437 G A 1119 off_target DP=92;DP4=16,21,17,37;AD=37,54;TYPE=SNP;DBXREF=dbSNP:rs2290493,g1000:0.310703,esp5400:0.18398,ExAC:0.263; 1 22211222 chr1:SNP:438 T C 2652 off_target DP=101;DP4=0,0,44,57;AD=0,101;TYPE=SNP;DBXREF=dbSNP:rs4654994,g1000:0.896366,esp5400:0.903932,ExAC:0.909; 1 22214127 chr1:SNP:439 A G 596 . DP=59;DP4=8,22,8,21;AD=30,29;TYPE=SNP;DBXREF=dbSNP:rs2229478,g1000:0.536342,esp5400:0.428239,ExAC:0.417,MutationTaster:0; 1 22214645 chr1:SNP:440 C A 113 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs3767140,g1000:0.342053; 1 22216574 chr1:SNP:441 C A 721 . DP=61;DP4=15,13,17,16;AD=28,33;TYPE=SNP;DBXREF=dbSNP:rs2254358,g1000:0.444489,esp5400:0.549266,ExAC:0.577,MutationTaster:0.002; 1 22216604 chr1:SNP:442 C G 795 . DP=64;DP4=13,15,21,15;AD=28,36;TYPE=SNP;DBXREF=dbSNP:rs2254357,g1000:0.444489,esp5400:0.549173,ExAC:0.577,MutationTaster:1; 1 22217108 chr1:SNP:443 G A 958 . DP=38;DP4=0,0,20,17;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2501260,g1000:0.948083,esp5400:0.952036,ExAC:0.986; 1 22832743 chr1:SNP:444 A T 325 low_coverage DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs209732,g1000:0.799121,esp5400:0.710634,ExAC:0.693; 1 22835677 chr1:SNP:445 A G 705 . DP=26;DP4=0,0,12,14;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs209729,g1000:0.822484,esp5400:0.78258,ExAC:0.765,MutationTaster:0; 1 22837944 chr1:SNP:446 T C 511 off_target DP=20;DP4=0,0,2,18;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2073168,g1000:0.333067; 1 22846709 chr1:SNP:447 G A 1029 . DP=38;DP4=0,0,15,23;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs209720,g1000:0.998403,esp5400:0.996096,ExAC:0.997,MutationTaster:0; 1 22852715 chr1:SNP:448 G C 3084 . DP=121;DP4=1,1,74,45;AD=2,119;TYPE=SNP;DBXREF=dbSNP:rs881646,g1000:0.318091,esp5400:0.297174,ExAC:0.342; 1 22965438 chr1:SNP:449 A G 1904 . DP=126;DP4=29,14,61,22;AD=43,83;TYPE=SNP;DBXREF=dbSNP:rs172378,g1000:0.616414,esp5400:0.482916,ExAC:0.468,MutationTaster:1; 1 22970642 chr1:SNP:450 C T 314 . DP=45;DP4=15,13,8,9;AD=28,17;TYPE=SNP;DBXREF=dbSNP:rs15940,g1000:0.299321,esp5400:0.287411,ExAC:0.242; 1 23219493 chr1:SNP:451 T C 869 . DP=33;DP4=0,0,12,21;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs309472,g1000:0.998203,esp5400:0.99433,ExAC:0.996; 1 23232400 chr1:SNP:452 C T 800 off_target DP=88;DP4=29,18,25,15;AD=47,40;TYPE=SNP;DBXREF=dbSNP:rs309502,g1000:0.511981; 1 23885498 chr1:SNP:453 T C 899 . DP=81;DP4=21,16,22,21;AD=37,43;TYPE=SNP;DBXREF=dbSNP:rs11574,g1000:0.890375,esp5400:0.824596,ExAC:0.803,MutationTaster:0; 1 23886073 chr1:SNP:454 T C 161 low_coverage;off_target DP=12;DP4=1,4,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs2742946,g1000:0.435104; 1 24018277 chr1:SNP:455 C G 722 off_target DP=29;DP4=0,0,16,12;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs10917413,g1000:0.976837,esp5400:0.983175,ExAC:0.995,clinvar:rs10917413|2; 1 24122986 chr1:SNP:456 C T 475 low_coverage;off_target DP=19;DP4=0,0,18,0;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs760941,esp5400:0.535608,ExAC:0.578,clinvar:rs760941|2; 1 24134462 chr1:SNP:457 C T 527 off_target DP=20;DP4=0,0,20,0;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs719399,g1000:0.88758; 1 24134721 chr1:SNP:458 T C 10000 . DP=153;DP4=0,0,70,83;AD=0,153;TYPE=SNP;DBXREF=dbSNP:rs719400,g1000:0.88738,esp5400:0.92638,ExAC:0.904,clinvar:rs719400|2,MutationTaster:1; 1 24143932 chr1:SNP:459 A G 867 off_target DP=35;DP4=0,0,22,13;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2076344,g1000:0.88778,esp5400:0.926553,ExAC:0.904,clinvar:rs2076344|2; 1 24201094 chr1:SNP:460 G C 342 low_coverage DP=13;DP4=0,0,6,7;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2229581,g1000:0.653355,esp5400:0.63878,ExAC:0.619; 1 24201109 chr1:SNP:461 C T 307 low_coverage DP=12;DP4=0,0,5,7;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2229580,g1000:0.653355,esp5400:0.638595,ExAC:0.619; 1 24201262 chr1:SNP:462 A G 460 low_coverage DP=18;DP4=0,0,14,4;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2502993,g1000:0.653355,esp5400:0.638316,ExAC:0.619; 1 24201357 chr1:SNP:463 A G 623 . DP=23;DP4=0,0,11,12;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs4649124,g1000:0.653355,esp5400:0.638502,ExAC:0.618; 1 24201448 chr1:SNP:464 C T 632 . DP=24;DP4=0,0,13,11;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs3003336,g1000:0.653355,esp5400:0.639152,ExAC:0.618; 1 24201643 chr1:SNP:465 G A 553 . DP=21;DP4=0,0,8,13;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2501431,g1000:0.653355,esp5400:0.638502,ExAC:0.619; 1 24201919 chr1:SNP:466 T C 588 . DP=23;DP4=0,0,11,12;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2502992,g1000:0.653954,esp5400:0.608199,ExAC:0.617; 1 24201920 chr1:SNP:467 T C 606 . DP=23;DP4=0,0,10,13;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2501432,g1000:0.653355,esp5400:0.605596,ExAC:0.617,MutationTaster:0; 1 25599204 chr1:SNP:468 A C 162 off_target DP=22;DP4=4,10,0,8;AD=14,8;TYPE=SNP;DBXREF=dbSNP:rs586670,esp5400:0.000612; 1 25611035 chr1:SNP:469 G C 1226 off_target DP=48;DP4=0,0,36,12;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs2301153,g1000:0.622404,esp5400:0.559988,ExAC:0.712; 1 25617399 chr1:SNP:470 T C 190 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs28521909,g1000:0.805911; 1 25617406 chr1:SNP:471 G A 244 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs28562109,g1000:0.801917; 1 25717139 chr1:SNP:472 C T 176 low_coverage;off_target DP=14;DP4=6,0,8,0;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs636889,g1000:0.444289; 1 25728930 chr1:SNP:473 G T 126 low_coverage;off_target DP=13;DP4=7,0,6,0;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs28631635,g1000:0.528754; 1 25747399 chr1:SNP:474 G T 140 low_coverage;off_target DP=10;DP4=1,3,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs2072931,g1000:0.323482; 1 25893221 chr1:SNP:475 G T 828 off_target DP=34;DP4=1,0,28,5;AD=1,33;TYPE=SNP;DBXREF=dbSNP:rs4523506,g1000:0.569489; 1 25893242 chr1:SNP:476 T C 816 off_target DP=31;DP4=0,0,24,7;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs4418583,g1000:0.588059; 1 25893243 chr1:SNP:477 G A 741 off_target DP=29;DP4=0,0,24,5;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs4603124,g1000:0.416334; 1 26131654 chr1:SNP:478 G A 921 . DP=35;DP4=0,0,25,10;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs7349185,g1000:0.841853,esp5400:0.7883,ExAC:0.814,clinvar:rs7349185|2,MutationTaster:0; 1 26138136 chr1:SNP:479 C A 500 low_coverage;off_target DP=19;DP4=0,0,8,11;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs760598,g1000:0.747005,esp5400:0.684264,ExAC:0.779,clinvar:rs760598|2; 1 26138262 chr1:SNP:480 T C 1832 . DP=73;DP4=0,0,38,33;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs760597,g1000:0.791933,esp5400:0.73648,ExAC:0.786,clinvar:rs760597|2; 1 26139137 chr1:SNP:481 C T 263 low_coverage;off_target DP=10;DP4=0,0,7,3;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs10902685,g1000:0.697684,esp5400:0.634708,ExAC:0.758,clinvar:rs10902685|2; 1 26140573 chr1:SNP:482 C A 1630 . DP=62;DP4=0,0,25,37;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs2294228,g1000:0.697484,esp5400:0.628756,ExAC:0.773,clinvar:rs2294228|2,MutationTaster:0.9; 1 26365549 chr1:SNP:483 C T 237 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2997452,g1000:0.700479; 1 26369297 chr1:SNP:484 T C 553 off_target DP=21;DP4=0,0,1,20;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2997451,g1000:0.872204; 1 26504036 chr1:SNP:485 G A 823 . DP=81;DP4=25,17,15,24;AD=42,39;TYPE=SNP;DBXREF=dbSNP:rs17356937,g1000:0.0998403,esp5400:0.179401,ExAC:0.152; 1 26504196 chr1:SNP:486 C G 130 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs2783707,g1000:0.535343; 1 26515529 chr1:INDEL:26 ACCAGACT A 135 low_coverage;off_target DP=13;DP4=2,4,0,6;AD=6,6;TYPE=INDEL;DBXREF=dbSNP:rs11278474,g1000:0.946685; 1 26517267 chr1:SNP:487 A G 172 . DP=20;DP4=4,8,4,4;AD=12,8;TYPE=SNP;DBXREF=dbSNP:rs41284333,g1000:0.123203,esp5400:0.200316,ExAC:0.153,MutationTaster:0; 1 26517773 chr1:SNP:488 T C 367 . DP=34;DP4=12,5,12,5;AD=17,17;TYPE=SNP;DBXREF=dbSNP:rs11247865,g1000:0.134984,esp5400:0.208403,ExAC:0.158; 1 26517794 chr1:SNP:489 A G 426 . DP=40;DP4=12,7,16,5;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs11247866,g1000:0.122005,esp5400:0.199851,ExAC:0.154,MutationTaster:0.118; 1 26517891 chr1:SNP:490 C T 492 . DP=54;DP4=10,18,11,15;AD=28,26;TYPE=SNP;DBXREF=dbSNP:rs11247867,g1000:0.117013,esp5400:0.195947,ExAC:0.153; 1 26524706 chr1:SNP:491 A G 741 off_target DP=29;DP4=0,0,20,9;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs9970046,g1000:0.672524; 1 26526554 chr1:SNP:492 G A 126 low_coverage DP=15;DP4=0,9,0,6;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs6700024,g1000:0.191494,esp5400:0.243075,ExAC:0.185; 1 26527310 chr1:SNP:493 C G 160 . DP=23;DP4=15,0,8,0;AD=15,8;TYPE=SNP;DBXREF=dbSNP:rs12118976,g1000:0.194489,esp5400:0.261294,ExAC:0.204; 1 26527699 chr1:SNP:494 T C 147 low_coverage;off_target DP=13;DP4=5,1,6,1;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs869139,g1000:0.379393; 1 26527809 chr1:SNP:495 A C 631 off_target DP=65;DP4=26,8,23,8;AD=34,31;TYPE=SNP;DBXREF=dbSNP:rs1889755,g1000:0.21845,esp5400:0.00846,ExAC:0.22; 1 26527810 chr1:SNP:496 G A 487 off_target DP=62;DP4=30,7,19,6;AD=37,25;TYPE=SNP;DBXREF=dbSNP:rs1889756,g1000:0.21845,esp5400:0.003997,ExAC:0.22; 1 26527951 chr1:SNP:497 G A 1220 . DP=142;DP4=30,50,20,42;AD=80,62;TYPE=SNP;DBXREF=dbSNP:rs6657616,g1000:0.210264,esp5400:0.287135,ExAC:0.223,MutationTaster:0; 1 26528922 chr1:SNP:498 C G 462 off_target DP=42;DP4=19,1,21,1;AD=20,22;TYPE=SNP;DBXREF=dbSNP:rs10902720,g1000:0.375,esp5400:0.394249; 1 26752992 chr1:SNP:499 T C 588 off_target DP=23;DP4=0,0,8,15;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs4659441,g1000:0.843251,esp5400:0.817539,ExAC:0.82; 1 26784196 chr1:SNP:500 A G 130 low_coverage;off_target DP=10;DP4=3,1,5,1;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs114122859,g1000:0.00439297,esp5400:0.009586; 1 27100181 chr1:INDEL:27 C CGCA 580 . DP=101;DP4=35,35,12,18;AD=70,30;TYPE=INDEL;DBXREF=dbSNP:rs570962335,ExAC:0.003945,clinvar:rs570962335|3; 1 27696011 chr1:SNP:501 C T 1630 off_target DP=62;DP4=0,0,19,43;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs10218730,g1000:0.992412,esp5400:0.991817,ExAC:0.998; 1 29063559 chr1:SNP:502 A C 527 off_target DP=20;DP4=0,0,13,7;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs6697540,g1000:0.961262,esp5400:0.988889; 1 29138975 chr1:SNP:503 G T 650 . DP=24;DP4=0,0,19,5;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs1042114,g1000:0.944489,esp5400:0.917768,ExAC:0.878,MutationTaster:0; 1 29345009 chr1:INDEL:28 C CTT 557 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=INDEL;DBXREF=dbSNP:rs5773229,g1000:0.927716; 1 29345027 chr1:SNP:504 T G 179 low_coverage;off_target DP=15;DP4=0,7,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs2985334,g1000:0.851637; 1 29439016 chr1:SNP:505 T A 346 low_coverage;off_target DP=15;DP4=0,1,5,9;AD=1,14;TYPE=SNP;DBXREF=dbSNP:rs4654390,g1000:0.402556,esp5400:0.420532; 1 31347399 chr1:SNP:506 C T 1127 . DP=113;DP4=23,33,29,28;AD=56,57;TYPE=SNP;DBXREF=dbSNP:rs4949184,g1000:0.234425,esp5400:0.229039,ExAC:0.194,MutationTaster:0.002; 1 31349647 chr1:SNP:507 C T 401 . DP=49;DP4=12,16,12,9;AD=28,21;TYPE=SNP;DBXREF=dbSNP:rs2491132,g1000:0.076278,esp5400:0.151264,ExAC:0.153,clinvar:rs2491132|255,MutationTaster:0; 1 31351513 chr1:SNP:508 G A 857 . DP=88;DP4=25,22,23,18;AD=47,41;TYPE=SNP;DBXREF=dbSNP:rs1891419,g1000:0.177915,esp5400:0.21082,ExAC:0.259; 1 31840426 chr1:SNP:509 C G 316 low_coverage;off_target DP=12;DP4=0,0,1,11;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2271072,g1000:0.409944; 1 32084904 chr1:SNP:510 C T 646 . DP=89;DP4=26,28,18,17;AD=54,35;TYPE=SNP;DBXREF=dbSNP:rs1056526,g1000:0.352835,esp5400:0.413367,ExAC:0.49; 1 32085485 chr1:SNP:511 G A 140 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs11575883,g1000:0.438498; 1 32086912 chr1:SNP:512 A C 107 low_coverage;off_target DP=9;DP4=1,3,2,3;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs2280386,g1000:0.478035; 1 32092525 chr1:SNP:513 A G 1714 . DP=136;DP4=17,39,31,49;AD=56,80;TYPE=SNP;DBXREF=dbSNP:rs2271933,g1000:0.439696,esp5400:0.503532,ExAC:0.556,MutationTaster:1; 1 33245802 chr1:SNP:514 C G 1838 . DP=179;DP4=44,43,44,46;AD=87,90;TYPE=SNP;DBXREF=dbSNP:rs699005,g1000:0.0874601,esp5400:0.100112,ExAC:0.098; 1 33256645 chr1:SNP:515 G C 326 off_target DP=26;DP4=11,0,13,2;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs881393,g1000:0.149161; 1 33256884 chr1:SNP:516 C A 299 off_target DP=21;DP4=0,8,3,10;AD=8,13;TYPE=SNP;DBXREF=dbSNP:rs1765223,g1000:0.291134,esp5400:0.307549,ExAC:0.308; 1 33276424 chr1:SNP:517 G A 1141 off_target DP=45;DP4=0,0,13,31;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs4951787,g1000:0.984026; 1 33282775 chr1:SNP:518 C A 331 off_target DP=56;DP4=21,17,11,7;AD=38,18;TYPE=SNP;DBXREF=dbSNP:rs72654020,g1000:0.0856629,esp5400:0.097974,ExAC:0.098; 1 33478585 chr1:INDEL:29 GCA G 109 low_variant_fraction DP=106;DP4=44,47,2,6;AD=91,8;TYPE=INDEL;DBXREF=dbSNP:rs368005323,ExAC:0.182; 1 33560338 chr1:SNP:519 A G 10000 off_target DP=133;DP4=0,0,34,99;AD=0,133;TYPE=SNP;DBXREF=dbSNP:rs804428,g1000:0.988618,esp5400:0.960216,ExAC:0.97; 1 35334404 chr1:SNP:520 T G 117 low_coverage DP=16;DP4=8,1,0,7;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs758215471,MutationTaster:0.009; 1 36553673 chr1:SNP:521 A G 10000 . DP=161;DP4=0,0,79,82;AD=0,161;TYPE=SNP;DBXREF=dbSNP:rs399393,g1000:0.938698,esp5400:0.920152,ExAC:0.924; 1 36563158 chr1:SNP:522 C A 448 low_coverage;off_target DP=18;DP4=1,0,17,0;AD=1,17;TYPE=SNP;DBXREF=dbSNP:rs3738360,g1000:0.65635,esp5400:0.779513,ExAC:0.797; 1 36565584 chr1:SNP:523 C G 281 low_coverage;off_target DP=11;DP4=0,0,10,1;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs274753,g1000:0.921725; 1 36565617 chr1:SNP:524 G A 190 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs274754,g1000:0.482628,esp5400:0.647239,ExAC:0.648; 1 36565999 chr1:SNP:525 A G 244 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs4652900,g1000:0.493411; 1 37324683 chr1:SNP:526 A C 510 off_target DP=44;DP4=18,2,21,3;AD=20,24;TYPE=SNP;DBXREF=dbSNP:rs3738081,g1000:0.310304,esp5400:0.36438,ExAC:0.266; 1 37324935 chr1:SNP:527 T C 356 off_target DP=29;DP4=0,13,1,15;AD=13,16;TYPE=SNP;DBXREF=dbSNP:rs12067006,g1000:0.258187; 1 37325477 chr1:SNP:528 A C 1446 . DP=118;DP4=28,24,45,21;AD=52,66;TYPE=SNP;DBXREF=dbSNP:rs6691840,g1000:0.30611,esp5400:0.360383,ExAC:0.272,MutationTaster:0; 1 37335458 chr1:SNP:529 A G 894 off_target DP=35;DP4=0,0,9,26;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs577094,g1000:0.917532,esp5400:0.891156; 1 37335485 chr1:SNP:530 A G 521 off_target DP=21;DP4=0,0,6,15;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs509284,g1000:0.917532; 1 37335494 chr1:SNP:531 G T 332 low_coverage;off_target DP=13;DP4=0,0,1,12;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs577813,g1000:0.917532; 1 38006359 chr1:SNP:532 A G 1525 . DP=58;DP4=0,0,28,30;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs2174769,g1000:0.722045,esp5400:0.721788,ExAC:0.808; 1 38078630 chr1:SNP:533 A T 545 off_target DP=22;DP4=0,0,2,20;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs55852308,g1000:0.193091,esp5400:0.203119,ExAC:0.242; 1 38082122 chr1:SNP:534 G A 271 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs12039431,g1000:0.192492,esp5400:0.191709,ExAC:0.239; 1 38082123 chr1:SNP:535 C T 244 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs12046650,g1000:0.192492,esp5400:0.187475,ExAC:0.239; 1 39494687 chr1:SNP:536 G A 396 off_target DP=26;DP4=0,9,0,17;AD=9,17;TYPE=SNP;DBXREF=dbSNP:rs3768323,g1000:0.539736; 1 40363054 chr1:SNP:537 G C 894 . DP=35;DP4=0,0,26,9;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs3134614,g1000:0.935703,esp5400:0.906023,ExAC:0.884,MutationTaster:1; 1 40367592 chr1:SNP:538 A G 352 low_coverage;off_target DP=13;DP4=0,0,6,7;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs804719,g1000:1,ExAC:0.997; 1 40545964 chr1:SNP:539 T G 790 off_target DP=30;DP4=0,0,27,3;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs3122428,g1000:0.734225; 1 40556922 chr1:SNP:540 T C 716 off_target DP=28;DP4=0,0,18,10;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs3122439,g1000:0.994209; 1 40558256 chr1:SNP:541 C G 352 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4481840,g1000:0.994609; 1 40562993 chr1:SNP:542 T C 527 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs6600313,g1000:0.832668; 1 40733658 chr1:SNP:543 A G 518 off_target DP=52;DP4=5,21,5,21;AD=26,26;TYPE=SNP;DBXREF=dbSNP:rs7516571,g1000:0.222644,clinvar:rs7516571|1; 1 40737516 chr1:SNP:544 T G 658 off_target DP=25;DP4=0,0,21,4;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs6677717,g1000:0.993211,esp5400:0.989585,ExAC:0.985,clinvar:rs6677717|1|2; 1 40980559 chr1:SNP:545 G A 204 low_coverage DP=16;DP4=6,1,2,7;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs1134586,g1000:0.106629,esp5400:0.155326,ExAC:0.153,MutationTaster:0.569; 1 40980668 chr1:SNP:546 T C 249 low_coverage DP=17;DP4=3,3,6,5;AD=6,11;TYPE=SNP;DBXREF=dbSNP:rs35672330,g1000:0.0197684,esp5400:0.047592,ExAC:0.041,MutationTaster:0.013; 1 40980731 chr1:SNP:547 G T 174 . DP=25;DP4=5,11,5,4;AD=16,9;TYPE=SNP;DBXREF=dbSNP:rs11208299,g1000:0.542133,esp5400:0.463934,ExAC:0.444,MutationTaster:0.06; 1 41098699 chr1:SNP:548 G C 574 off_target DP=30;DP4=6,0,16,8;AD=6,24;TYPE=SNP;DBXREF=dbSNP:rs190403126,g1000:0.000798722,esp5400:0.001487,ExAC:0.001408; 1 41284366 chr1:SNP:549 G C 354 off_target DP=26;DP4=5,5,5,11;AD=10,16;TYPE=SNP;DBXREF=dbSNP:rs2361660,g1000:0.567492,esp5400:0.683967,ExAC:0.616,clinvar:rs2361660|2; 1 41284406 chr1:SNP:550 A G 133 low_coverage;off_target DP=12;DP4=1,5,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs2361659,g1000:0.566893; 1 41296828 chr1:SNP:551 T G 620 . DP=38;DP4=7,4,19,8;AD=11,27;TYPE=SNP;DBXREF=dbSNP:rs34287852,g1000:0.0940495,esp5400:0.17414,ExAC:0.173,clinvar:rs34287852|2,MutationTaster:0.235; 1 41298546 chr1:INDEL:30 GCCCC GCCCCC 291 off_target DP=31;DP4=1,0,29,0;AD=1,29;TYPE=INDEL;DBXREF=dbSNP:rs5773705,g1000:0.921326; 1 41298652 chr1:SNP:552 T C 10000 off_target DP=134;DP4=0,0,86,48;AD=0,134;TYPE=SNP;DBXREF=dbSNP:rs913378,g1000:0.738618,esp5400:0.66958,ExAC:0.713; 1 41303904 chr1:SNP:553 G A 148 off_target DP=24;DP4=14,1,7,2;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs12740352,g1000:0.106629; 1 41949628 chr1:SNP:554 A C 461 low_coverage;off_target DP=17;DP4=0,0,15,2;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2759257,g1000:0.823283; 1 41950312 chr1:SNP:555 T C 921 off_target DP=34;DP4=0,0,14,20;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2984691,g1000:0.896965,esp5400:0.918898,ExAC:0.867; 1 43201534 chr1:SNP:556 G A 964 . DP=72;DP4=13,16,25,18;AD=29,43;TYPE=SNP;DBXREF=dbSNP:rs4660658,g1000:0.190495,esp5400:0.181383,ExAC:0.139,MutationTaster:0; 1 43201576 chr1:SNP:557 C T 466 . DP=84;DP4=29,30,10,15;AD=59,25;TYPE=SNP;DBXREF=dbSNP:rs116804195,g1000:0.0107827,esp5400:0.011584,ExAC:0.013,MutationTaster:1; 1 43212431 chr1:SNP:558 A G 10000 . DP=140;DP4=0,0,72,68;AD=0,140;TYPE=SNP;DBXREF=dbSNP:rs4660662,g1000:1,ExAC:0.999,clinvar:rs4660662|3; 1 43212869 chr1:SNP:559 A T 2068 . DP=190;DP4=51,38,45,55;AD=89,100;TYPE=SNP;DBXREF=dbSNP:rs3738496,g1000:0.121006,esp5400:0.106711,ExAC:0.123,MutationTaster:0; 1 43213499 chr1:SNP:560 C T 843 off_target DP=33;DP4=0,0,16,17;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs3738499,g1000:0.554113,esp5400:0.517104,ExAC:0.597; 1 43213610 chr1:SNP:561 T C 184 low_coverage;off_target DP=7;DP4=0,0,2,5;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs7552138,g1000:0.751997; 1 43228189 chr1:SNP:562 T A 461 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2816593,g1000:0.99361,esp5400:0.98931,ExAC:0.986; 1 43300663 chr1:SNP:563 T C 122 low_coverage;off_target DP=17;DP4=9,2,4,2;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs4660672,g1000:0.582468,esp5400:0.661647,ExAC:0.666; 1 43393245 chr1:INDEL:31 G GGGTGAGAAAT 689 off_target DP=29;DP4=3,0,23,3;AD=3,26;TYPE=INDEL;DBXREF=dbSNP:rs11282849,g1000:0.617412,ExAC:0.516; 1 43638410 chr1:SNP:564 G C 172 low_coverage;off_target DP=17;DP4=6,2,5,4;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs1782386,g1000:0.142372,esp5400:0.210541,ExAC:0.211; 1 43638457 chr1:SNP:565 T A 572 . DP=40;DP4=11,4,16,9;AD=15,25;TYPE=SNP;DBXREF=dbSNP:rs1782387,g1000:0.142372,esp5400:0.210076,ExAC:0.211; 1 43649508 chr1:SNP:566 A G 322 . DP=36;DP4=3,16,3,14;AD=19,17;TYPE=SNP;DBXREF=dbSNP:rs663824,g1000:0.520168,esp5400:0.521008,ExAC:0.449,MutationTaster:0; 1 43650741 chr1:SNP:567 T C 788 off_target DP=83;DP4=34,8,31,8;AD=42,39;TYPE=SNP;DBXREF=dbSNP:rs598336,g1000:0.473043; 1 43652369 chr1:SNP:568 T C 232 low_coverage DP=10;DP4=0,0,6,4;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6413971,g1000:0.996805,esp5400:0.996003,ExAC:0.999; 1 43663376 chr1:SNP:569 A G 843 off_target DP=33;DP4=0,0,16,17;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs513009,g1000:0.71885,esp5400:0.805168,ExAC:0.834; 1 43664119 chr1:SNP:570 A G 679 off_target DP=66;DP4=21,13,25,7;AD=34,32;TYPE=SNP;DBXREF=dbSNP:rs603560,g1000:0.200879,esp5400:0.275423,ExAC:0.252; 1 43664218 chr1:SNP:571 C T 1157 . DP=114;DP4=24,35,25,30;AD=59,55;TYPE=SNP;DBXREF=dbSNP:rs603123,g1000:0.202077,esp5400:0.27626,ExAC:0.253; 1 43672636 chr1:SNP:572 T G 291 off_target DP=39;DP4=7,17,1,14;AD=24,15;TYPE=SNP;DBXREF=dbSNP:rs11210812,g1000:0.474241,esp5400:0.421974,ExAC:0.534; 1 43675467 chr1:SNP:573 G A 1315 . DP=50;DP4=0,0,31,19;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs2453412,g1000:0.694888,esp5400:0.771798,ExAC:0.791; 1 43680855 chr1:SNP:574 G A 737 off_target DP=28;DP4=0,0,17,11;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs4233492,g1000:0.992212; 1 43681184 chr1:SNP:575 C T 271 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs612626,g1000:0.695288; 1 43688743 chr1:SNP:576 G A 148 low_coverage;off_target DP=8;DP4=0,2,0,6;AD=2,6;TYPE=SNP;DBXREF=dbSNP:rs11585059,g1000:0.146166; 1 43697968 chr1:SNP:577 G A 256 off_target DP=26;DP4=1,13,1,11;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs3120045,g1000:0.467452; 1 43699935 chr1:SNP:578 C T 867 off_target DP=32;DP4=0,0,24,8;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs2477561,g1000:0.994609,ExAC:0.998; 1 43700140 chr1:SNP:579 A G 1580 off_target DP=143;DP4=40,27,47,29;AD=67,76;TYPE=SNP;DBXREF=dbSNP:rs2483688,g1000:0.796326,ExAC:0.793; 1 43812075 chr1:SNP:580 G A 139 low_coverage;off_target DP=9;DP4=2,1,5,1;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs1760670,g1000:0.209665,esp5400:0.324782,ExAC:0.297,clinvar:rs1760670|2; 1 43814864 chr1:SNP:581 T C 364 off_target DP=46;DP4=20,8,10,8;AD=28,18;TYPE=SNP;DBXREF=dbSNP:rs839995,g1000:0.203674; 1 44019731 chr1:SNP:582 C T 159 low_coverage;off_target DP=11;DP4=0,4,0,7;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs2842185,g1000:0.813898; 1 44035352 chr1:SNP:583 C T 1790 . DP=216;DP4=60,64,47,45;AD=124,92;TYPE=SNP;DBXREF=dbSNP:rs1065771,g1000:0.222045,esp5400:0.23285,ExAC:0.282; 1 44035472 chr1:SNP:584 G A 971 off_target DP=92;DP4=11,34,3,44;AD=45,47;TYPE=SNP;DBXREF=dbSNP:rs943513,g1000:0.249401,esp5400:0.34393,ExAC:0.31; 1 44044468 chr1:SNP:585 C T 793 off_target DP=73;DP4=20,16,20,17;AD=36,37;TYPE=SNP;DBXREF=dbSNP:rs11210874,g1000:0.270767,esp5400:0.254136,ExAC:0.299; 1 44056462 chr1:SNP:586 T C 112 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs2117315,g1000:0.333267; 1 44057257 chr1:SNP:587 A G 227 off_target DP=27;DP4=1,15,2,9;AD=16,11;TYPE=SNP;DBXREF=dbSNP:rs2304353,g1000:0.282548,esp5400:0.222017,ExAC:0.222; 1 44057668 chr1:SNP:588 G T 256 off_target DP=26;DP4=1,13,1,11;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs7540068,g1000:0.281749,esp5400:0.247257,ExAC:0.305; 1 44057696 chr1:SNP:589 A G 149 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs7553297,g1000:0.281749; 1 44058265 chr1:SNP:590 C A 137 low_coverage DP=19;DP4=4,8,1,6;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs3828151,g1000:0.446486,esp5400:0.421733,ExAC:0.412,MutationTaster:1; 1 44064319 chr1:SNP:591 A G 273 off_target DP=20;DP4=6,1,10,3;AD=7,13;TYPE=SNP;DBXREF=dbSNP:rs17849103,g1000:0.394768; 1 44067859 chr1:SNP:592 A G 340 off_target DP=30;DP4=3,11,2,14;AD=14,16;TYPE=SNP;DBXREF=dbSNP:rs12023161,g1000:0.394968; 1 44070691 chr1:SNP:593 A G 666 off_target DP=42;DP4=2,10,12,18;AD=12,30;TYPE=SNP;DBXREF=dbSNP:rs17371903,g1000:0.187101,esp5400:0.281372,ExAC:0.299; 1 44071221 chr1:SNP:594 G A 2992 . DP=114;DP4=0,0,44,70;AD=0,114;TYPE=SNP;DBXREF=dbSNP:rs631248,g1000:0.602436,esp5400:0.668712,ExAC:0.694,MutationTaster:1; 1 44071853 chr1:SNP:595 T C 230 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs512579,g1000:0.764177; 1 44072018 chr1:SNP:596 C T 567 . DP=60;DP4=17,15,13,15;AD=32,28;TYPE=SNP;DBXREF=dbSNP:rs1065772,g1000:0.278155,esp5400:0.263153,ExAC:0.323,MutationTaster:1; 1 44072066 chr1:SNP:597 C T 785 . DP=84;DP4=19,26,18,21;AD=45,39;TYPE=SNP;DBXREF=dbSNP:rs10890266,g1000:0.28115,esp5400:0.271612,ExAC:0.33,MutationTaster:1; 1 44075227 chr1:SNP:598 T C 658 off_target DP=25;DP4=0,0,6,19;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs517622,g1000:0.985224; 1 44079411 chr1:SNP:599 T C 1473 off_target DP=56;DP4=0,0,24,32;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs603542,g1000:0.470447,esp5400:0.535694,ExAC:0.583; 1 44083015 chr1:SNP:600 G A 332 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs653953,g1000:0.595647; 1 44083110 chr1:SNP:601 C T 1814 . DP=69;DP4=0,0,40,29;AD=0,69;TYPE=SNP;DBXREF=dbSNP:rs571862,g1000:0.73742,esp5400:0.807585,ExAC:0.719; 1 44083507 chr1:SNP:602 T C 10000 . DP=202;DP4=0,0,93,109;AD=0,202;TYPE=SNP;DBXREF=dbSNP:rs641365,g1000:0.73722,esp5400:0.807678,ExAC:0.718,MutationTaster:1; 1 44083519 chr1:SNP:603 G A 10000 . DP=186;DP4=0,0,72,114;AD=0,186;TYPE=SNP;DBXREF=dbSNP:rs641351,g1000:0.73722,esp5400:0.807678,ExAC:0.718,MutationTaster:1; 1 44084739 chr1:SNP:604 C T 906 . DP=36;DP4=0,0,26,9;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs1143701,g1000:0.73742,esp5400:0.807585,ExAC:0.719,MutationTaster:1; 1 44086080 chr1:SNP:605 T C 448 low_coverage;off_target DP=17;DP4=0,0,9,8;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs568639,g1000:0.73762,esp5400:0.808629,ExAC:0.715; 1 44086831 chr1:SNP:606 C T 2815 . DP=109;DP4=0,1,54,54;AD=1,108;TYPE=SNP;DBXREF=dbSNP:rs1143702,g1000:0.570487,esp5400:0.6372,ExAC:0.611,MutationTaster:1; 1 44280381 chr1:SNP:607 A T 223 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs37468,g1000:0.885982; 1 44290530 chr1:SNP:608 A G 413 . DP=36;DP4=7,9,10,10;AD=16,20;TYPE=SNP;DBXREF=dbSNP:rs37458,g1000:0.236422,esp5400:0.335202,ExAC:0.271,clinvar:rs37458|255,MutationTaster:0; 1 44386305 chr1:SNP:609 C T 380 low_coverage;off_target DP=14;DP4=0,0,6,8;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs3120802,g1000:0.7498; 1 44386615 chr1:SNP:610 A G 684 off_target DP=26;DP4=0,0,14,12;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs3120803,g1000:0.809105,esp5400:0.849116,ExAC:0.87,clinvar:rs3120803|2; 1 44395786 chr1:SNP:611 C T 1761 off_target DP=67;DP4=0,0,37,30;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs2108202,g1000:0.51877,esp5400:0.588306,ExAC:0.668,clinvar:rs2108202|2,MutationTaster:0; 1 45286329 chr1:SNP:612 T G 202 off_target DP=31;DP4=15,5,6,5;AD=20,11;TYPE=SNP;DBXREF=dbSNP:rs11573603,g1000:0.00638978,esp5400:0.021954,ExAC:0.00793; 1 45291908 chr1:SNP:613 G A 588 off_target DP=43;DP4=13,4,20,6;AD=17,26;TYPE=SNP;DBXREF=dbSNP:rs11211040,g1000:0.195687,esp5400:0.16174,ExAC:0.184; 1 45293518 chr1:SNP:614 A G 262 . DP=26;DP4=11,2,10,3;AD=13,13;TYPE=SNP;DBXREF=dbSNP:rs7525308,g1000:0.445487,esp5400:0.425916,ExAC:0.383; 1 45293752 chr1:SNP:615 T C 494 . DP=36;DP4=4,9,9,14;AD=13,23;TYPE=SNP;DBXREF=dbSNP:rs2295997,g1000:0.21266,esp5400:0.179959,ExAC:0.19; 1 45294156 chr1:SNP:616 T C 848 off_target DP=72;DP4=18,14,19,21;AD=32,40;TYPE=SNP;DBXREF=dbSNP:rs2273940,g1000:0.443291,esp5400:0.422755,ExAC:0.382; 1 45295296 chr1:SNP:617 C T 586 . DP=97;DP4=33,32,14,18;AD=65,32;TYPE=SNP;DBXREF=dbSNP:rs139624405,g1000:0.00139776,esp5400:0.00567,ExAC:0.007207,clinvar:rs139624405|2,MutationTaster:1; 1 45297753 chr1:SNP:618 A G 442 off_target DP=43;DP4=6,15,10,12;AD=21,22;TYPE=SNP;DBXREF=dbSNP:rs2295999,g1000:0.28115,esp5400:0.262688,ExAC:0.211; 1 45307506 chr1:SNP:619 G A 313 off_target DP=53;DP4=30,5,14,3;AD=35,17;TYPE=SNP;DBXREF=dbSNP:rs3795720,g1000:0.372005,esp5400:0.340212,ExAC:0.368; 1 45340282 chr1:SNP:620 C T 113 low_coverage;off_target DP=11;DP4=3,3,1,4;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs9988451,g1000:0.451677,esp5400:0.398887,ExAC:0.395; 1 45362992 chr1:SNP:621 T C 534 off_target DP=47;DP4=14,7,14,12;AD=21,26;TYPE=SNP;DBXREF=dbSNP:rs263978,g1000:0.791134,esp5400:0.662019,ExAC:0.64,clinvar:rs263978|2; 1 45443894 chr1:SNP:622 T C 310 off_target DP=26;DP4=12,0,13,1;AD=12,14;TYPE=SNP;DBXREF=dbSNP:rs2487367,g1000:0.326877; 1 45444038 chr1:SNP:623 G A 956 . DP=91;DP4=27,19,26,19;AD=46,45;TYPE=SNP;DBXREF=dbSNP:rs11556200,g1000:0.296526,esp5400:0.286206,ExAC:0.259,clinvar:rs11556200|255; 1 45479772 chr1:SNP:624 G T 401 off_target DP=36;DP4=7,10,6,13;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs11211066,g1000:0.245607,esp5400:0.215932,ExAC:0.255; 1 45480733 chr1:SNP:625 C T 496 off_target DP=20;DP4=0,0,8,12;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs6429553,g1000:0.992612,esp5400:0.989177; 1 45796269 chr1:SNP:626 G C 469 off_target DP=40;DP4=10,8,11,11;AD=18,22;TYPE=SNP;DBXREF=dbSNP:rs3219493,g1000:0.935304,esp5400:0.925795,ExAC:0.917; 1 45797505 chr1:SNP:627 C G 730 . DP=67;DP4=12,20,15,20;AD=32,35;TYPE=SNP;DBXREF=dbSNP:rs3219489,g1000:0.313498,esp5400:0.252929,ExAC:0.268,clinvar:rs3219489|2|2|2|2,MutationTaster:1; 1 45798555 chr1:SNP:628 T C 1313 off_target DP=145;DP4=35,42,31,37;AD=77,68;TYPE=SNP;DBXREF=dbSNP:rs3219487,g1000:0.937101,esp5400:0.928797,ExAC:0.925,clinvar:rs3219487|2; 1 45800033 chr1:SNP:629 T C 398 off_target DP=29;DP4=8,2,11,8;AD=10,19;TYPE=SNP;DBXREF=dbSNP:rs3219485,g1000:0.00938498,esp5400:0.024447,ExAC:0.025,clinvar:rs3219485|2; 1 46655158 chr1:SNP:630 T C 10000 . DP=131;DP4=0,0,61,69;AD=0,130;TYPE=SNP;DBXREF=dbSNP:rs6659553,g1000:0.942492,esp5400:0.940138,ExAC:0.984,clinvar:rs6659553|2,MutationTaster:1; 1 46658328 chr1:SNP:631 A G 581 off_target DP=47;DP4=4,16,6,21;AD=20,27;TYPE=SNP;DBXREF=dbSNP:rs2292484,g1000:0.333466,esp5400:0.354978; 1 46658343 chr1:SNP:632 G A 442 off_target DP=40;DP4=4,15,4,17;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs2292485,g1000:0.333466; 1 46659104 chr1:SNP:633 T C 375 off_target DP=50;DP4=11,19,10,10;AD=30,20;TYPE=SNP;DBXREF=dbSNP:rs7527668,g1000:0.367013,esp5400:0.37923,ExAC:0.353,clinvar:rs7527668|2; 1 46659363 chr1:SNP:634 T C 374 off_target DP=25;DP4=2,6,8,9;AD=8,17;TYPE=SNP;DBXREF=dbSNP:rs7527935,g1000:0.333466,esp5400:0.351102,ExAC:0.351; 1 46660295 chr1:SNP:635 T C 413 . DP=41;DP4=11,10,10,10;AD=21,20;TYPE=SNP;DBXREF=dbSNP:rs2292487,g1000:0.333466,esp5400:0.348485,ExAC:0.355,clinvar:rs2292487|255,MutationTaster:1; 1 46860237 chr1:SNP:636 G A 119 low_coverage;off_target DP=14;DP4=4,4,4,2;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs72890727,g1000:0.13119,esp5400:0.197497,ExAC:0.08; 1 46870761 chr1:SNP:637 C A 839 . DP=67;DP4=11,17,14,25;AD=28,39;TYPE=SNP;DBXREF=dbSNP:rs324420,g1000:0.261581,esp5400:0.255903,ExAC:0.233,clinvar:rs324420|255,MutationTaster:0; 1 46871746 chr1:SNP:638 G A 887 . DP=85;DP4=27,15,23,20;AD=42,43;TYPE=SNP;DBXREF=dbSNP:rs41305628,g1000:0.0141773,esp5400:0.033742,ExAC:0.032; 1 46871986 chr1:SNP:639 T C 10000 . DP=151;DP4=0,0,71,80;AD=0,151;TYPE=SNP;DBXREF=dbSNP:rs324419,g1000:0.884385,esp5400:0.845231,ExAC:0.859; 1 46874383 chr1:SNP:640 A G 103 low_coverage;off_target DP=14;DP4=0,9,0,5;AD=9,5;TYPE=SNP;DBXREF=dbSNP:rs2295633,g1000:0.605032; 1 46877180 chr1:SNP:641 G A 305 off_target DP=33;DP4=15,3,12,3;AD=18,15;TYPE=SNP;DBXREF=dbSNP:rs6662982,g1000:0.103035; 1 47276728 chr1:SNP:642 G C 372 off_target DP=41;DP4=14,8,14,5;AD=22,19;TYPE=SNP;DBXREF=dbSNP:rs2297812,g1000:0.496006; 1 47395973 chr1:SNP:643 G A 2364 . DP=90;DP4=0,0,19,71;AD=0,90;TYPE=SNP;DBXREF=dbSNP:rs1126743,g1000:0.571486,esp5400:0.658022,ExAC:0.701; 1 47398743 chr1:SNP:644 G C 945 off_target DP=37;DP4=0,0,21,16;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs3890011,g1000:0.571486,esp5400:0.657929,ExAC:0.701; 1 47399967 chr1:SNP:645 G A 134 low_variant_fraction DP=53;DP4=27,18,4,4;AD=45,8;TYPE=SNP;DBXREF=dbSNP:rs28451040,g1000:0.394169,esp5400:0.307117,ExAC:0.288; 1 47400059 chr1:SNP:646 A G 1026 off_target DP=39;DP4=0,0,21,18;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs9333012,g1000:0.978634,esp5400:0.96212,ExAC:0.992; 1 47401424 chr1:SNP:647 A T 307 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2269231,g1000:0.570687; 1 47607281 chr1:SNP:648 C T 540 . DP=49;DP4=11,13,7,18;AD=24,25;TYPE=SNP;DBXREF=dbSNP:rs12564525,g1000:0.371206,esp5400:0.221138,ExAC:0.292,MutationTaster:0; 1 47607762 chr1:SNP:649 T C 520 off_target DP=56;DP4=24,7,21,4;AD=31,25;TYPE=SNP;DBXREF=dbSNP:rs2056901,g1000:0.345048,esp5400:0.216676,ExAC:0.278; 1 47607785 chr1:SNP:650 G A 638 . DP=72;DP4=26,13,23,9;AD=39,32;TYPE=SNP;DBXREF=dbSNP:rs2056900,g1000:0.336262,esp5400:0.208217,ExAC:0.268,MutationTaster:0.999; 1 47607851 chr1:SNP:651 A T 2098 . DP=84;DP4=0,1,49,34;AD=1,83;TYPE=SNP;DBXREF=dbSNP:rs2056899,g1000:0.730831,esp5400:0.544525,ExAC:0.53,MutationTaster:0; 1 47608983 chr1:SNP:652 G T 351 . DP=35;DP4=6,12,8,9;AD=18,17;TYPE=SNP;DBXREF=dbSNP:rs4926581,g1000:0.335663,esp5400:0.208481,ExAC:0.268,MutationTaster:0.001; 1 47609091 chr1:SNP:653 G A 182 low_coverage;off_target DP=14;DP4=1,5,1,7;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs34753269,g1000:0.180112,esp5400:0.121345; 1 47609407 chr1:SNP:654 C T 483 off_target DP=61;DP4=25,12,22,2;AD=37,24;TYPE=SNP;DBXREF=dbSNP:rs10890469,g1000:0.195288,esp5400:0.141755,ExAC:0.151; 1 47609489 chr1:SNP:655 T C 10000 . DP=175;DP4=2,0,92,81;AD=2,173;TYPE=SNP;DBXREF=dbSNP:rs10789501,g1000:0.580671,esp5400:0.391708,ExAC:0.454,MutationTaster:0.082; 1 47609668 chr1:SNP:656 T C 498 off_target DP=21;DP4=0,1,3,17;AD=1,20;TYPE=SNP;DBXREF=dbSNP:rs911909,g1000:0.579673; 1 47609944 chr1:SNP:657 C A 252 off_target DP=24;DP4=12,0,12,0;AD=12,12;TYPE=SNP;DBXREF=dbSNP:rs12734074,g1000:0.190695; 1 47610293 chr1:SNP:658 C T 501 . DP=77;DP4=24,27,11,15;AD=51,26;TYPE=SNP;DBXREF=dbSNP:rs968322,esp5400:0.135481; 1 47610436 chr1:SNP:659 G C 1085 off_target DP=98;DP4=28,18,27,25;AD=46,52;TYPE=SNP;DBXREF=dbSNP:rs147000658,g1000:0.185903,esp5400:0.130164,ExAC:0.148; 1 47610590 chr1:SNP:660 A C 565 . DP=96;DP4=25,40,6,25;AD=65,31;TYPE=SNP;DBXREF=dbSNP:rs2405593,g1000:0.101238,esp5400:0.021565; 1 47611598 chr1:SNP:661 T C 414 . DP=54;DP4=17,15,13,9;AD=32,22;TYPE=SNP;DBXREF=dbSNP:rs2405599,g1000:0.375799,esp5400:0.231827,ExAC:0.302,MutationTaster:0.998; 1 47614185 chr1:SNP:662 G C 705 off_target DP=26;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs760440,g1000:0.582867; 1 47614485 chr1:SNP:663 A G 398 off_target DP=37;DP4=3,15,0,19;AD=18,19;TYPE=SNP;DBXREF=dbSNP:rs72684327,g1000:0.211462,esp5400:0.171686,ExAC:0.165; 1 47685455 chr1:SNP:664 T C 1525 . DP=58;DP4=0,0,35,23;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs927462,g1000:1,ExAC:1; 1 47689842 chr1:SNP:665 C G 395 low_coverage;off_target DP=15;DP4=0,0,1,14;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs34087210,g1000:0.326078; 1 47717189 chr1:SNP:666 A G 2834 . DP=113;DP4=0,0,30,82;AD=0,112;TYPE=SNP;DBXREF=dbSNP:rs2758735,g1000:0.393371,esp5400:0.406395,ExAC:0.498,clinvar:rs2758735|2; 1 47735280 chr1:SNP:667 T C 684 off_target DP=26;DP4=0,0,21,5;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2742104,g1000:0.394369,esp5400:0.406546,ExAC:0.497,clinvar:rs2742104|3; 1 47753405 chr1:SNP:668 G A 606 off_target DP=23;DP4=0,0,4,19;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs12125261,g1000:0.301717; 1 47770786 chr1:SNP:669 T A 515 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs6692734,g1000:0.301318; 1 47833918 chr1:SNP:670 G A 263 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs61784776,g1000:0.0471246; 1 47842431 chr1:SNP:671 G A 974 off_target DP=37;DP4=0,0,11,26;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs3125648,g1000:0.953674,esp5400:0.945695,ExAC:0.985; 1 49052933 chr1:SNP:672 T C 326 off_target DP=26;DP4=0,11,1,14;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs2803277,g1000:0.34365; 1 49056695 chr1:SNP:673 T C 506 off_target DP=45;DP4=3,18,5,19;AD=21,24;TYPE=SNP;DBXREF=dbSNP:rs7543402,g1000:0.341653,esp5400:0.381554,ExAC:0.337; 1 49100332 chr1:SNP:674 C T 466 off_target DP=41;DP4=9,10,9,13;AD=19,22;TYPE=SNP;DBXREF=dbSNP:rs319983,g1000:0.395966; 1 49128720 chr1:SNP:675 C T 107 low_coverage;off_target DP=9;DP4=3,1,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs320007,g1000:0.421725; 1 49332724 chr1:SNP:676 A C 566 off_target DP=23;DP4=1,0,22,0;AD=1,22;TYPE=SNP;DBXREF=dbSNP:rs6703833,g1000:0.344848; 1 49332969 chr1:SNP:677 A G 1735 off_target DP=66;DP4=0,0,23,43;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs61785986,g1000:0.34365,esp5400:0.542981; 1 49511424 chr1:SNP:678 A G 2600 . DP=99;DP4=0,0,48,51;AD=0,99;TYPE=SNP;DBXREF=dbSNP:rs3934240,g1000:0.22504,esp5400:0.19295,ExAC:0.142; 1 52851729 chr1:SNP:679 G A 243 off_target DP=21;DP4=1,9,0,11;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs78572338,g1000:0.14357; 1 53513437 chr1:SNP:680 T C 382 off_target DP=43;DP4=18,6,17,2;AD=24,19;TYPE=SNP;DBXREF=dbSNP:rs1288362,g1000:0.249601; 1 53755151 chr1:SNP:681 T C 123 low_coverage;off_target DP=14;DP4=8,0,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs12035577,g1000:0.353035; 1 53792651 chr1:SNP:682 A C 622 . DP=51;DP4=11,11,12,17;AD=22,29;TYPE=SNP;DBXREF=dbSNP:rs3820198,g1000:0.550319,esp5400:0.522867,ExAC:0.411,MutationTaster:1; 1 53793511 chr1:SNP:683 T C 103 low_coverage DP=14;DP4=5,4,3,2;AD=9,5;TYPE=SNP;DBXREF=dbSNP:rs4926972,g1000:0.550319,esp5400:0.62073,ExAC:0.319,MutationTaster:0.001; 1 54370306 chr1:SNP:684 G A 237 off_target DP=30;DP4=13,5,9,3;AD=18,12;TYPE=SNP;DBXREF=dbSNP:rs2294512,g1000:0.416534,esp5400:0.324579,ExAC:0.335; 1 55318108 chr1:SNP:685 C T 185 off_target DP=20;DP4=2,9,4,5;AD=11,9;TYPE=SNP;DBXREF=dbSNP:rs667222,g1000:0.372604,esp5400:0.338446,ExAC:0.335; 1 55319902 chr1:SNP:686 A G 406 . DP=54;DP4=13,20,8,13;AD=33,21;TYPE=SNP;DBXREF=dbSNP:rs718265,g1000:0.627596,esp5400:0.660996,ExAC:0.664; 1 55319935 chr1:INDEL:32 GAAAAAAA GAAAAAA 114 off_target DP=54;DP4=9,17,6,21;AD=26,27;TYPE=INDEL;DBXREF=dbSNP:rs141309546,g1000:0.145168,ExAC:0.115; 1 55330966 chr1:SNP:687 T C 537 . DP=21;DP4=0,0,19,2;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs611057,g1000:0.988618,esp5400:0.987728,ExAC:0.997; 1 55464743 chr1:SNP:688 T C 298 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2500340,g1000:0.59405; 1 55464790 chr1:SNP:689 C G 694 off_target DP=28;DP4=0,0,23,5;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs2500341,g1000:0.595048; 1 55505732 chr1:SNP:690 A G 390 off_target DP=50;DP4=5,25,1,19;AD=30,20;TYPE=SNP;DBXREF=dbSNP:rs2495482,g1000:0.908546,esp5400:0.910489,ExAC:0.911,clinvar:rs2495482|2|2; 1 55517883 chr1:SNP:691 C G 342 low_coverage;off_target DP=13;DP4=0,0,12,1;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs624612,g1000:0.421326; 1 55518166 chr1:SNP:692 G A 251 low_coverage;off_target DP=9;DP4=0,0,2,7;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs625619,g1000:0.549321,clinvar:rs625619|2; 1 55518528 chr1:SNP:693 C A 316 low_coverage;off_target DP=12;DP4=0,0,3,9;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs494198,g1000:0.629193,clinvar:rs494198|2; 1 55523033 chr1:SNP:694 A G 10000 . DP=133;DP4=0,0,71,62;AD=0,133;TYPE=SNP;DBXREF=dbSNP:rs509504,g1000:0.981829,esp5400:0.977691,ExAC:0.995,clinvar:rs509504|2|0; 1 55523361 chr1:SNP:695 A G 658 off_target DP=25;DP4=0,0,3,22;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs533375,g1000:0.858826; 1 55523984 chr1:SNP:696 C T 230 low_coverage;off_target DP=9;DP4=0,0,4,5;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs584626,g1000:0.863019; 1 55524116 chr1:SNP:697 C T 596 off_target DP=22;DP4=0,0,20,2;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs585131,g1000:0.869209,clinvar:rs585131|2; 1 55524197 chr1:SNP:698 A G 1551 . DP=59;DP4=0,0,36,23;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs540796,g1000:0.869209,esp5400:0.817345,ExAC:0.854,clinvar:rs540796|2|2,MutationTaster:1; 1 55524237 chr1:SNP:699 G A 2076 . DP=79;DP4=0,0,35,44;AD=0,79;TYPE=SNP;DBXREF=dbSNP:rs562556,g1000:0.86901,esp5400:0.817345,ExAC:0.854,clinvar:rs562556|2|2,MutationTaster:0; 1 55527323 chr1:SNP:700 G A 448 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs630431,g1000:0.674521; 1 55529187 chr1:SNP:701 G A 2207 . DP=84;DP4=0,0,38,46;AD=0,84;TYPE=SNP;DBXREF=dbSNP:rs505151,g1000:0.898962,esp5400:0.888269,ExAC:0.943,clinvar:rs505151|2|2,MutationTaster:0; 1 55538385 chr1:SNP:702 T C 264 low_coverage;off_target DP=11;DP4=0,0,9,2;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs654674,g1000:0.908746; 1 55541174 chr1:SNP:703 A G 1473 . DP=56;DP4=0,0,27,29;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs487230,g1000:0.692292,esp5400:0.644544,ExAC:0.75,MutationTaster:0.305; 1 55541338 chr1:INDEL:33 ACACCAC A 108 low_coverage;off_target DP=13;DP4=0,6,0,5;AD=6,5;TYPE=INDEL;DBXREF=dbSNP:rs200910325; 1 55545515 chr1:SNP:704 C G 263 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs550336,g1000:0.802716; 1 55546895 chr1:SNP:705 T C 421 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs683880,g1000:0.691494; 1 55555285 chr1:SNP:706 G A 511 off_target DP=20;DP4=0,0,13,7;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs548852,g1000:0.691294,esp5400:0.639267,ExAC:0.714; 1 55557859 chr1:INDEL:34 A ATT 561 off_target DP=23;DP4=1,1,3,18;AD=2,21;TYPE=INDEL;DBXREF=dbSNP:rs34673217,g1000:0.908746; 1 55557864 chr1:SNP:707 C T 542 off_target DP=20;DP4=0,0,3,17;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs3736992,g1000:0.691494; 1 55558661 chr1:SNP:708 A G 395 low_coverage;off_target DP=15;DP4=0,0,2,13;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs585203,g1000:0.692292; 1 55560796 chr1:SNP:709 T C 154 low_coverage;off_target DP=7;DP4=0,0,6,0;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs503495,g1000:0.767772; 1 55562125 chr1:SNP:710 G T 383 low_coverage;off_target DP=15;DP4=0,0,12,3;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs580485,g1000:0.908746,esp5400:0.844221,ExAC:0.843; 1 55566411 chr1:INDEL:35 TTAGTC T 268 low_coverage;off_target DP=11;DP4=1,0,6,4;AD=1,10;TYPE=INDEL;DBXREF=dbSNP:rs67540253,g1000:0.76897; 1 55567410 chr1:SNP:711 A G 1073 off_target DP=42;DP4=0,0,13,29;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs615652,g1000:0.904353,esp5400:0.854217,ExAC:0.869; 1 55572867 chr1:SNP:712 G A 1525 off_target DP=58;DP4=0,0,48,10;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs594226,g1000:0.691893,esp5400:0.643762,ExAC:0.756; 1 55587394 chr1:SNP:713 T C 217 low_coverage;off_target DP=8;DP4=0,0,1,7;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs641995,g1000:0.909345; 1 55614036 chr1:INDEL:36 CAT C 296 low_coverage;off_target DP=12;DP4=1,0,11,0;AD=1,11;TYPE=INDEL;DBXREF=dbSNP:rs34030121,g1000:0.777955; 1 55619422 chr1:SNP:714 G A 263 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1165230,g1000:0.768371; 1 55638075 chr1:SNP:715 G A 737 . DP=28;DP4=0,0,17,11;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs1165222,g1000:0.907149,esp5400:0.850607,ExAC:0.876,MutationTaster:0; 1 55643837 chr1:INDEL:37 TAAAA TAAA 1099 off_target DP=129;DP4=8,5,24,92;AD=13,116;TYPE=INDEL;DBXREF=dbSNP:rs11350615,g1000:0.903954,ExAC:0.863; 1 57140349 chr1:INDEL:38 CTTTTTTT CTTTTTTTT 193 off_target DP=29;DP4=0,4,0,25;AD=4,25;TYPE=INDEL;DBXREF=dbSNP:rs11394634,g1000:0.988818; 1 57170229 chr1:SNP:716 T C 335 off_target DP=36;DP4=1,18,2,15;AD=19,17;TYPE=SNP;DBXREF=dbSNP:rs932447,g1000:0.291134; 1 57333304 chr1:SNP:717 C T 494 . DP=56;DP4=14,18,6,18;AD=32,24;TYPE=SNP;DBXREF=dbSNP:rs143523574,g1000:0.0141773,esp5400:0.00158,ExAC:0.013,MutationTaster:0; 1 57340727 chr1:SNP:718 C A 428 . DP=55;DP4=17,16,10,12;AD=33,22;TYPE=SNP;DBXREF=dbSNP:rs652785,g1000:0.34365,esp5400:0.31623,ExAC:0.368,clinvar:rs652785|2,MutationTaster:0; 1 57395020 chr1:SNP:719 A G 325 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2795,g1000:0.367212; 1 57395251 chr1:SNP:720 T C 2677 off_target DP=105;DP4=0,0,43,62;AD=0,105;TYPE=SNP;DBXREF=dbSNP:rs605648,g1000:0.880391,esp5400:0.830359,ExAC:0.882; 1 57397301 chr1:SNP:721 G A 358 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs683824,g1000:0.367212; 1 57422484 chr1:SNP:722 C T 2521 . DP=96;DP4=0,0,51,45;AD=0,96;TYPE=SNP;DBXREF=dbSNP:rs1013579,g1000:0.986422,esp5400:0.97546,ExAC:0.977,MutationTaster:0; 1 59248813 chr1:SNP:723 G C 921 off_target DP=35;DP4=0,0,10,25;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2760499,g1000:0.951877; 1 60373666 chr1:SNP:724 A C 527 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2271800,g1000:0.237819; 1 60373775 chr1:SNP:725 T C 263 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1155002,g1000:0.723642; 1 60377133 chr1:SNP:726 T G 316 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1570693,g1000:0.261781; 1 60381584 chr1:SNP:727 C T 591 off_target DP=50;DP4=17,6,25,2;AD=23,27;TYPE=SNP;DBXREF=dbSNP:rs3738474,g1000:0.0373403,esp5400:0.054192,ExAC:0.058; 1 60392494 chr1:SNP:728 C A 413 off_target DP=41;DP4=4,17,3,17;AD=21,20;TYPE=SNP;DBXREF=dbSNP:rs890293,g1000:0.0782748; 1 61869783 chr1:SNP:729 G A 568 . DP=61;DP4=22,10,17,12;AD=32,29;TYPE=SNP;DBXREF=dbSNP:rs2236059,g1000:0.353834,esp5400:0.273378,ExAC:0.318; 1 61872228 chr1:SNP:730 C T 553 . DP=21;DP4=0,0,14,7;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2474380,g1000:0.479633,esp5400:0.050863; 1 61892301 chr1:INDEL:39 TG TGG 378 off_target DP=20;DP4=1,1,4,13;AD=2,17;TYPE=INDEL;DBXREF=dbSNP:rs5774558,g1000:0.9998; 1 61920769 chr1:SNP:731 T C 103 low_coverage;off_target DP=14;DP4=9,0,5,0;AD=9,5;TYPE=SNP;DBXREF=dbSNP:rs2474358,g1000:0.872404; 1 63070537 chr1:INDEL:40 AGTTAATGTG A 273 off_target DP=23;DP4=0,11,0,12;AD=11,12;TYPE=INDEL;DBXREF=dbSNP:rs67461605,g1000:0.348442,ExAC:0.332; 1 64097432 chr1:SNP:732 C T 1444 . DP=55;DP4=0,1,8,46;AD=1,54;TYPE=SNP;DBXREF=dbSNP:rs1126728,g1000:0.241414,esp5400:0.226436,ExAC:0.243,MutationTaster:1; 1 64100478 chr1:SNP:733 A T 618 off_target DP=25;DP4=1,0,15,9;AD=1,24;TYPE=SNP;DBXREF=dbSNP:rs6588052,g1000:0.5002,esp5400:0.426009,ExAC:0.414; 1 64102114 chr1:SNP:734 A G 335 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2269248,g1000:0.49401; 1 64114301 chr1:SNP:735 T C 625 . DP=59;DP4=13,15,14,17;AD=28,31;TYPE=SNP;DBXREF=dbSNP:rs11208257,g1000:0.225839,esp5400:0.182283,ExAC:0.224,MutationTaster:0.949; 1 64114429 chr1:SNP:736 G T 101 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs11576729,g1000:0.225639; 1 64117537 chr1:SNP:737 G T 190 off_target DP=22;DP4=3,9,4,6;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs2269238,g1000:0.276158,esp5400:0.230061,ExAC:0.236; 1 65830297 chr1:SNP:738 G T 295 low_coverage;off_target DP=16;DP4=1,0,13,0;AD=1,13;TYPE=SNP;DBXREF=dbSNP:rs2296478,g1000:0.550319,esp5400:0.046038; 1 65830299 chr1:SNP:739 T G 256 low_coverage;off_target DP=14;DP4=3,0,11,0;AD=3,11;TYPE=SNP;DBXREF=dbSNP:rs2296479,g1000:0.550319; 1 65830608 chr1:SNP:740 T C 407 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs1570868,g1000:0.484824; 1 65851759 chr1:SNP:741 G A 515 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs10889546,g1000:0.707867; 1 65858088 chr1:SNP:742 T C 435 low_coverage;off_target DP=17;DP4=0,0,13,4;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6588144,g1000:0.415935,esp5400:0.50409,ExAC:0.483; 1 65858145 chr1:SNP:743 G A 1110 . DP=41;DP4=0,0,29,12;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs4325172,g1000:0.354034,esp5400:0.459751,ExAC:0.454; 1 65860687 chr1:SNP:744 A C 1608 . DP=63;DP4=0,0,23,40;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs4582839,g1000:0.757788,esp5400:0.697713,ExAC:0.647; 1 65867391 chr1:SNP:745 C G 840 off_target DP=35;DP4=0,0,24,11;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs4592284,g1000:0.73143; 1 66031063 chr1:SNP:746 G A 542 off_target DP=20;DP4=0,0,20,0;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs6673324,g1000:0.575879; 1 66036028 chr1:SNP:747 A G 251 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3790431,g1000:0.212061; 1 66058513 chr1:SNP:748 A G 1438 . DP=58;DP4=1,0,32,25;AD=1,57;TYPE=SNP;DBXREF=dbSNP:rs1137101,g1000:0.584265,esp5400:0.486429,ExAC:0.509,clinvar:rs1137101|2,MutationTaster:1; 1 66064293 chr1:SNP:749 A C 1210 off_target DP=46;DP4=0,0,35,11;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs3762273,g1000:0.573882,esp5400:0.437337,ExAC:0.469; 1 66067109 chr1:SNP:750 T C 1429 . DP=56;DP4=1,0,44,11;AD=1,55;TYPE=SNP;DBXREF=dbSNP:rs1805134,g1000:0.253994,esp5400:0.24261,ExAC:0.228; 1 66081664 chr1:SNP:751 A G 442 off_target DP=40;DP4=15,4,16,5;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs13306520,g1000:0.0792732,esp5400:0.034207,ExAC:0.05; 1 66085574 chr1:SNP:752 T A 370 off_target DP=33;DP4=11,4,10,8;AD=15,18;TYPE=SNP;DBXREF=dbSNP:rs3790439,g1000:0.563898,esp5400:0.433028,ExAC:0.455; 1 66088701 chr1:SNP:753 C A 451 off_target DP=56;DP4=12,21,5,18;AD=33,23;TYPE=SNP;DBXREF=dbSNP:rs12067936,g1000:0.563299,esp5400:0.432744,ExAC:0.453; 1 66098653 chr1:SNP:754 T C 118 low_coverage;off_target DP=8;DP4=3,0,5,0;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs1938498,g1000:0.527955; 1 66102257 chr1:SNP:755 G A 1390 . DP=98;DP4=14,21,29,34;AD=35,63;TYPE=SNP;DBXREF=dbSNP:rs1805096,g1000:0.529752,esp5400:0.407035,ExAC:0.451; 1 66723726 chr1:SNP:756 T A 169 low_coverage;off_target DP=9;DP4=0,2,0,7;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs1321174,g1000:0.297524; 1 66731886 chr1:SNP:757 G C 289 off_target DP=21;DP4=1,7,1,12;AD=8,13;TYPE=SNP;DBXREF=dbSNP:rs6588193,g1000:0.274161; 1 66829262 chr1:SNP:758 A G 763 . DP=29;DP4=0,0,4,25;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs783039,g1000:0.86901,esp5400:0.794107,ExAC:0.791; 1 67487119 chr1:SNP:759 C A 694 off_target DP=61;DP4=20,9,21,11;AD=29,32;TYPE=SNP;DBXREF=dbSNP:rs2065002,g1000:0.632188; 1 67487376 chr1:SNP:760 C A 287 off_target DP=40;DP4=6,20,2,12;AD=26,14;TYPE=SNP;DBXREF=dbSNP:rs61780038,g1000:0.553514; 1 67487377 chr1:SNP:761 A G 229 off_target DP=34;DP4=2,20,2,10;AD=22,12;TYPE=SNP;DBXREF=dbSNP:rs61780039,g1000:0.152157; 1 67487389 chr1:SNP:762 G C 246 off_target DP=26;DP4=1,13,2,10;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs11576749; 1 67487395 chr1:SNP:763 G C 258 off_target DP=22;DP4=0,10,2,10;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs11576752,g1000:0.625799; 1 67487401 chr1:SNP:764 G C 110 low_coverage;off_target DP=16;DP4=1,9,0,6;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs11576753,g1000:0.631589; 1 67507734 chr1:SNP:765 T A 262 off_target DP=23;DP4=10,0,13,0;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs2815375,g1000:0.789137; 1 67508080 chr1:INDEL:41 CCACT C 107 low_coverage;off_target DP=14;DP4=2,6,0,5;AD=8,5;TYPE=INDEL;DBXREF=dbSNP:rs10546548,g1000:0.373802; 1 67512903 chr1:SNP:766 G T 410 off_target DP=42;DP4=18,4,14,6;AD=22,20;TYPE=SNP;DBXREF=dbSNP:rs1024229,g1000:0.709465,esp5400:0.692487,ExAC:0.672; 1 67512920 chr1:SNP:767 A C 660 off_target DP=63;DP4=26,6,24,7;AD=32,31;TYPE=SNP;DBXREF=dbSNP:rs1024230,g1000:0.709465,esp5400:0.691207,ExAC:0.675; 1 67515228 chr1:SNP:768 G A 112 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs2815382,g1000:0.555112; 1 67516316 chr1:SNP:769 T A 226 off_target DP=20;DP4=0,10,0,10;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs2815383,g1000:0.514776; 1 67633812 chr1:SNP:770 G T 252 . DP=24;DP4=6,6,5,7;AD=12,12;TYPE=SNP;DBXREF=dbSNP:rs1884444,g1000:0.530152,esp5400:0.520357,ExAC:0.528,MutationTaster:0; 1 67634991 chr1:INDEL:42 AC A 146 low_coverage;off_target DP=19;DP4=10,0,9,0;AD=10,9;TYPE=INDEL;DBXREF=dbSNP:rs11465778,g1000:0.034345,ExAC:0.044; 1 67648460 chr1:SNP:771 T C 623 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs6687620,g1000:0.952077; 1 67685387 chr1:SNP:772 T C 1379 . DP=54;DP4=0,0,23,31;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs7530511,g1000:0.875998,esp5400:0.837516,ExAC:0.878,MutationTaster:0; 1 67685443 chr1:SNP:773 G A 277 off_target DP=34;DP4=6,14,3,11;AD=20,14;TYPE=SNP;DBXREF=dbSNP:rs7518660,g1000:0.411142,esp5400:0.471644,ExAC:0.432; 1 67705726 chr1:SNP:774 A G 298 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs10889671,g1000:0.882188; 1 67795319 chr1:SNP:775 T C 1164 . DP=47;DP4=0,0,19,28;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs1495963,g1000:0.85024,esp5400:0.908254,ExAC:0.932,MutationTaster:0; 1 67804548 chr1:SNP:776 G C 180 low_coverage;off_target DP=9;DP4=0,2,0,7;AD=2,7;TYPE=SNP; 1 67852141 chr1:SNP:777 A G 421 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs12138812,g1000:0.632987; 1 67852335 chr1:SNP:778 G A 1758 . DP=65;DP4=0,0,16,49;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs2228420,g1000:0.413538,esp5400:0.458542,ExAC:0.528; 1 67861488 chr1:SNP:779 G C 675 . DP=68;DP4=3,31,7,27;AD=34,34;TYPE=SNP;DBXREF=MutationTaster:1; 1 67861520 chr1:SNP:780 C A 984 . DP=39;DP4=0,1,7,31;AD=1,38;TYPE=SNP;DBXREF=dbSNP:rs2229546,g1000:0.555112,esp5400:0.614984,ExAC:0.63; 1 68896644 chr1:SNP:781 G A 221 off_target DP=22;DP4=12,0,10,0;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs932783,g1000:0.563099; 1 68905358 chr1:SNP:782 G C 871 off_target DP=66;DP4=15,11,23,17;AD=26,40;TYPE=SNP;DBXREF=dbSNP:rs1925955,g1000:0.69349,esp5400:0.52045,ExAC:0.526,clinvar:rs1925955|2; 1 68915479 chr1:SNP:783 A T 319 off_target DP=28;DP4=12,1,13,2;AD=13,15;TYPE=SNP;DBXREF=dbSNP:rs3125907,g1000:0.0932508; 1 70883840 chr1:SNP:784 A G 104 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs1145920,g1000:0.798722; 1 70904800 chr1:SNP:785 G T 228 . DP=40;DP4=16,12,7,5;AD=28,12;TYPE=SNP;DBXREF=dbSNP:rs1021737,g1000:0.205272,esp5400:0.237312,ExAC:0.277,clinvar:rs1021737|255,MutationTaster:0; 1 72058367 chr1:SNP:786 C T 331 low_coverage;off_target DP=14;DP4=0,0,12,1;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1334004,g1000:0.84984; 1 72058405 chr1:SNP:787 T C 840 off_target DP=31;DP4=0,0,29,2;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs1334005,g1000:0.84984; 1 72058552 chr1:SNP:788 G A 10000 . DP=164;DP4=0,0,98,66;AD=0,164;TYPE=SNP;DBXREF=dbSNP:rs1413368,g1000:0.849641,esp5400:0.894218,ExAC:0.943; 1 72058775 chr1:SNP:789 G A 658 off_target DP=25;DP4=0,0,0,25;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs1413369,g1000:0.84984; 1 72242039 chr1:SNP:790 G A 572 off_target DP=68;DP4=9,30,6,23;AD=39,29;TYPE=SNP;DBXREF=dbSNP:rs6424448,g1000:0.748403; 1 74737597 chr1:SNP:791 A G 263 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1412827,g1000:0.570887; 1 74819077 chr1:SNP:792 T G 1489 off_target DP=55;DP4=0,0,22,33;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs6424586,g1000:0.939097,esp5400:0.923313,ExAC:0.942; 1 74832757 chr1:SNP:793 A G 316 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2880794,g1000:0.605232; 1 74835788 chr1:SNP:794 T C 369 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs12034234,g1000:0.595048; 1 74954856 chr1:INDEL:43 CTTTTTT CTTTTTTT 117 . DP=46;DP4=10,10,11,13;AD=20,24;TYPE=INDEL;DBXREF=dbSNP:rs45592143,g1000:0.081869,ExAC:0.034; 1 75005776 chr1:SNP:795 A G 114 low_coverage;off_target DP=8;DP4=3,0,5,0;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs6656785,g1000:0.38738; 1 75006027 chr1:SNP:796 A G 576 off_target DP=57;DP4=21,8,20,8;AD=29,28;TYPE=SNP;DBXREF=dbSNP:rs3895907,g1000:0.324481,esp5400:0.44367,ExAC:0.452; 1 75006076 chr1:SNP:797 G A 1098 off_target DP=43;DP4=0,0,11,32;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs3845348,g1000:0.916334; 1 75602384 chr1:SNP:798 G T 221 . DP=20;DP4=4,5,3,8;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs71500673,g1000:0.127396,esp5400:0.198262,ExAC:0.152; 1 75603055 chr1:SNP:799 A G 263 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1526503,g1000:0.999401; 1 75609049 chr1:SNP:800 A C 432 off_target DP=38;DP4=0,17,4,17;AD=17,21;TYPE=SNP;DBXREF=dbSNP:rs12041465,g1000:0.322484,esp5400:0.164712,ExAC:0.253; 1 75626420 chr1:SNP:801 A T 540 off_target DP=22;DP4=1,0,18,3;AD=1,21;TYPE=SNP;DBXREF=dbSNP:rs2462955,g1000:0.938898; 1 76190568 chr1:SNP:802 C T 658 off_target DP=32;DP4=3,2,11,16;AD=5,27;TYPE=SNP;DBXREF=dbSNP:rs116034618,g1000:0.0702875,esp5400:0.1376; 1 76194229 chr1:INDEL:44 GTTTT GTTT 465 off_target DP=57;DP4=1,6,15,35;AD=7,50;TYPE=INDEL;DBXREF=dbSNP:rs11316888,g1000:1,clinvar:rs796117827|2; 1 76194306 chr1:SNP:803 A G 438 low_coverage;off_target DP=19;DP4=0,2,0,17;AD=2,17;TYPE=SNP;DBXREF=dbSNP:rs1146572,g1000:0.895966; 1 76269372 chr1:SNP:804 T C 1083 off_target DP=40;DP4=0,0,32,8;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs5745323,g1000:0.383387,esp5400:0.541315,ExAC:0.455; 1 76269460 chr1:SNP:805 G A 1341 . DP=51;DP4=0,0,29,22;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs5745325,g1000:0.212859,esp5400:0.303495,ExAC:0.262,MutationTaster:0; 1 76276536 chr1:SNP:806 T C 421 low_coverage;off_target DP=16;DP4=0,0,6,10;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs5745356,g1000:0.00579073,esp5400:0.014991,ExAC:0.014; 1 76280543 chr1:SNP:807 A G 380 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs1144339,g1000:0.838458; 1 76288487 chr1:SNP:808 T C 223 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1251275,g1000:0.759585; 1 76288587 chr1:SNP:809 T C 298 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1251274,g1000:0.838259; 1 76288590 chr1:SNP:810 G C 281 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs5745383,g1000:0.21266; 1 76344011 chr1:SNP:811 C A 1525 . DP=58;DP4=0,0,34,24;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs1493367,g1000:0.792732,esp5400:0.742145,ExAC:0.796; 1 76344711 chr1:SNP:812 A T 1570 . DP=58;DP4=0,0,20,38;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs5745449,g1000:0.792732,esp5400:0.742562,ExAC:0.796; 1 76344920 chr1:SNP:813 G A 245 low_coverage;off_target DP=11;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs5745453,g1000:0.95647; 1 76346920 chr1:INDEL:45 C CAT 1183 . DP=47;DP4=3,0,20,24;AD=3,44;TYPE=INDEL;DBXREF=dbSNP:rs5745466,g1000:0.956669,ExAC:0.988; 1 76349534 chr1:SNP:814 C G 1981 off_target DP=81;DP4=1,1,34,45;AD=2,79;TYPE=SNP;DBXREF=dbSNP:rs5745485,g1000:0.222843,esp5400:0.315021,ExAC:0.265; 1 76354711 chr1:SNP:815 T C 461 low_coverage;off_target DP=17;DP4=0,0,16,1;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs5745499,g1000:0.457268; 1 76356648 chr1:SNP:816 G A 583 off_target DP=23;DP4=1,0,1,21;AD=1,22;TYPE=SNP;DBXREF=dbSNP:rs5745507,g1000:0.388379; 1 76363505 chr1:SNP:817 A C 1423 off_target DP=62;DP4=2,2,37,21;AD=4,58;TYPE=SNP;DBXREF=dbSNP:rs2029680,g1000:0.205471; 1 76378275 chr1:SNP:818 G C 342 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs5745547,g1000:0.221046; 1 76378357 chr1:INDEL:46 ATAT A 1055 off_target DP=49;DP4=6,2,24,17;AD=8,41;TYPE=INDEL;DBXREF=dbSNP:rs71690142,g1000:0.145168,ExAC:0.295; 1 78382038 chr1:SNP:819 A C 148 low_coverage;off_target DP=8;DP4=0,2,0,6;AD=2,6;TYPE=SNP;DBXREF=dbSNP:rs74092331,g1000:0.0435304; 1 78399207 chr1:SNP:820 C G 300 off_target DP=35;DP4=2,18,2,13;AD=20,15;TYPE=SNP;DBXREF=dbSNP:rs4483454,g1000:0.664537,esp5400:0.713931,ExAC:0.735; 1 78399212 chr1:SNP:821 T C 391 off_target DP=35;DP4=3,13,1,17;AD=16,18;TYPE=SNP;DBXREF=dbSNP:rs41312654,g1000:0.0944489,esp5400:0.101062,ExAC:0.051; 1 79094593 chr1:SNP:822 A G 2076 off_target DP=79;DP4=0,0,52,27;AD=0,79;TYPE=SNP;DBXREF=dbSNP:rs273257,g1000:0.99361,esp5400:0.987807,ExAC:0.985; 1 79106967 chr1:SNP:823 C T 613 off_target DP=24;DP4=0,0,21,3;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs11577394,g1000:0.215655; 1 85733374 chr1:SNP:824 C T 382 . DP=43;DP4=17,7,10,9;AD=24,19;TYPE=SNP;DBXREF=dbSNP:rs3768235,g1000:0.0720847,esp5400:0.042201,ExAC:0.064,MutationTaster:0; 1 85733737 chr1:INDEL:47 TGTTAA T 416 off_target DP=41;DP4=7,15,2,17;AD=22,19;TYPE=INDEL;DBXREF=dbSNP:rs76553839,g1000:0.0493211; 1 85741921 chr1:SNP:825 G C 1083 off_target DP=40;DP4=0,0,21,19;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2735594,g1000:0.770567,esp5400:0.793445; 1 85787114 chr1:SNP:826 A T 1220 off_target DP=48;DP4=0,0,37,10;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs233116,g1000:1,ExAC:1; 1 86119898 chr1:SNP:827 A G 646 off_target DP=69;DP4=8,28,8,25;AD=36,33;TYPE=SNP;DBXREF=dbSNP:rs2274738,g1000:0.193291; 1 86120024 chr1:SNP:828 A G 244 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs821400,g1000:0.884784; 1 86167957 chr1:SNP:829 C T 476 off_target DP=49;DP4=5,19,6,18;AD=24,24;TYPE=SNP;DBXREF=dbSNP:rs1764298,g1000:0.706669,esp5400:0.700223,ExAC:0.794; 1 86173298 chr1:SNP:830 C T 1705 off_target DP=63;DP4=0,0,52,11;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs1539444,g1000:0.444289,esp5400:0.456126,ExAC:0.461; 1 86173943 chr1:SNP:831 C T 575 . DP=90;DP4=33,26,19,12;AD=59,31;TYPE=SNP;DBXREF=dbSNP:rs17399721,g1000:0.0247604,esp5400:0.058003,ExAC:0.058,MutationTaster:0; 1 86890872 chr1:SNP:832 A G 245 low_coverage;off_target DP=12;DP4=0,1,6,4;AD=1,10;TYPE=SNP;DBXREF=dbSNP:rs188598383,g1000:0.00359425; 1 86891005 chr1:SNP:833 C A 190 off_target DP=33;DP4=11,11,6,5;AD=22,11;TYPE=SNP;DBXREF=dbSNP:rs1158506,g1000:0.555911,esp5400:0.582258,ExAC:0.6; 1 86891179 chr1:SNP:834 T C 152 low_coverage;off_target DP=18;DP4=2,8,2,6;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs2210641,g1000:0.317891,esp5400:0.288562,ExAC:0.302; 1 86894371 chr1:SNP:835 G T 865 off_target DP=75;DP4=10,24,10,31;AD=34,41;TYPE=SNP;DBXREF=dbSNP:rs1334147,g1000:0.618411; 1 86896488 chr1:SNP:836 G C 1152 off_target DP=131;DP4=41,30,36,24;AD=71,60;TYPE=SNP;DBXREF=dbSNP:rs12076908,g1000:0.0521166; 1 86896541 chr1:SNP:837 G A 1207 . DP=110;DP4=19,33,22,36;AD=52,58;TYPE=SNP;DBXREF=dbSNP:rs3737672,g1000:0.366214,esp5400:0.326548,ExAC:0.355; 1 86897973 chr1:SNP:838 T C 1141 off_target DP=45;DP4=1,0,41,3;AD=1,44;TYPE=SNP;DBXREF=dbSNP:rs1334150,g1000:0.811901; 1 86898315 chr1:SNP:839 T C 170 low_coverage;off_target DP=14;DP4=0,6,0,8;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs3737159,g1000:0.271166; 1 86899940 chr1:INDEL:48 AC A 127 low_coverage;off_target DP=11;DP4=4,0,6,0;AD=4,6;TYPE=INDEL;DBXREF=dbSNP:rs3835427,g1000:0.293131; 1 86904352 chr1:SNP:840 C T 163 low_coverage;off_target DP=9;DP4=2,0,7,0;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs12060112,g1000:0.108427; 1 86904588 chr1:SNP:841 C T 1089 . DP=92;DP4=28,13,33,17;AD=41,50;TYPE=SNP;DBXREF=dbSNP:rs11161830,g1000:0.109026,esp5400:0.114055,ExAC:0.089; 1 86904850 chr1:SNP:842 C T 397 off_target DP=41;DP4=6,15,7,13;AD=21,20;TYPE=SNP;DBXREF=dbSNP:rs10493791,g1000:0.108626; 1 86906114 chr1:SNP:843 T C 151 off_target DP=25;DP4=0,17,0,8;AD=17,8;TYPE=SNP;DBXREF=dbSNP:rs1981082,g1000:0.521565; 1 86906128 chr1:SNP:844 C T 156 off_target DP=22;DP4=0,14,0,8;AD=14,8;TYPE=SNP;DBXREF=dbSNP:rs55917045,g1000:0.0395367; 1 86909493 chr1:SNP:845 C T 571 . DP=67;DP4=21,18,15,13;AD=39,28;TYPE=SNP;DBXREF=dbSNP:rs2390059,g1000:0.112021,esp5400:0.114891,ExAC:0.091; 1 86909582 chr1:SNP:846 G A 563 . DP=72;DP4=22,21,18,11;AD=43,29;TYPE=SNP;DBXREF=dbSNP:rs1413426,g1000:0.102436,esp5400:0.100762,ExAC:0.087,MutationTaster:0; 1 86913074 chr1:SNP:847 A G 209 low_coverage;off_target DP=16;DP4=6,0,9,1;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs12752909,g1000:0.106629; 1 86913265 chr1:SNP:848 C T 1200 . DP=130;DP4=47,23,38,22;AD=70,60;TYPE=SNP;DBXREF=dbSNP:rs2275001,g1000:0.254593,esp5400:0.222532,ExAC:0.279; 1 86920904 chr1:SNP:849 A G 855 . DP=63;DP4=15,9,17,22;AD=24,39;TYPE=SNP;DBXREF=dbSNP:rs2390057,g1000:0.328874,esp5400:0.303402,ExAC:0.343; 1 86938908 chr1:SNP:850 C T 684 off_target DP=26;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2753378,g1000:0.705671; 1 86939130 chr1:SNP:851 C T 1408 . DP=52;DP4=0,0,25,27;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs2145412,g1000:0.882188,esp5400:0.884365,ExAC:0.94,MutationTaster:0; 1 86939390 chr1:SNP:852 G A 711 off_target DP=27;DP4=0,0,5,22;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs2180762,g1000:0.915136,esp5400:0.91411,ExAC:0.95; 1 86947747 chr1:SNP:853 C A 122 low_coverage;off_target DP=17;DP4=11,0,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs1321695,g1000:0.481829; 1 86952324 chr1:SNP:854 A G 2041 . DP=80;DP4=0,0,43,37;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs2734705,g1000:0.886981,esp5400:0.869771,ExAC:0.863,MutationTaster:0; 1 86952601 chr1:SNP:855 A G 461 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2075630,g1000:0.627196; 1 86954453 chr1:SNP:856 G A 198 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2075631,g1000:0.415535; 1 86954472 chr1:SNP:857 C T 358 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2753337,g1000:0.844249; 1 86954591 chr1:SNP:858 T C 894 off_target DP=33;DP4=0,0,31,2;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2075632,g1000:0.231829; 1 86956772 chr1:SNP:859 G A 307 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2753341,g1000:0.326877; 1 86956785 chr1:SNP:860 C G 380 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2753342,g1000:0.876198; 1 86959014 chr1:SNP:861 T C 1404 off_target DP=55;DP4=0,0,39,16;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs2753346,g1000:0.854034; 1 86959173 chr1:SNP:862 T C 2652 . DP=101;DP4=0,0,55,46;AD=0,101;TYPE=SNP;DBXREF=dbSNP:rs2791494,g1000:0.849641,esp5400:0.800985,ExAC:0.842,MutationTaster:0; 1 86959424 chr1:SNP:863 C A 380 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs1321690,g1000:0.736621; 1 86959796 chr1:SNP:864 C T 1651 off_target DP=61;DP4=0,0,43,18;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs1321689,g1000:0.721246; 1 86964131 chr1:INDEL:49 CT C 232 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=INDEL;DBXREF=dbSNP:rs11302985,g1000:0.728634; 1 91383589 chr1:SNP:865 T G 198 off_target DP=25;DP4=10,5,9,1;AD=15,10;TYPE=SNP;DBXREF=dbSNP:rs2448020,g1000:0.11242,esp5400:0.111173,ExAC:0.121; 1 91447985 chr1:SNP:866 C T 562 off_target DP=22;DP4=0,0,8,14;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs358691,g1000:0.954473,esp5400:0.917184; 1 92146890 chr1:SNP:867 A G 280 . DP=33;DP4=10,9,4,10;AD=19,14;TYPE=SNP;DBXREF=dbSNP:rs17571088,g1000:0.108626,ExAC:0.111; 1 92148227 chr1:SNP:868 C G 1741 . DP=186;DP4=67,32,58,29;AD=99,87;TYPE=SNP;DBXREF=dbSNP:rs902,g1000:0.842053,ExAC:0.751; 1 92148839 chr1:SNP:869 T C 2052 . DP=232;DP4=65,63,49,55;AD=128,104;TYPE=SNP;DBXREF=dbSNP:rs1805117,g1000:0.101637,ExAC:0.104; 1 92149096 chr1:SNP:870 C T 777 . DP=69;DP4=9,23,7,30;AD=32,37;TYPE=SNP;DBXREF=dbSNP:rs1805116,g1000:0.0838658,ExAC:0.087; 1 92149139 chr1:SNP:871 C T 129 . DP=24;DP4=3,14,1,6;AD=17,7;TYPE=SNP;DBXREF=dbSNP:rs1805115,g1000:0.0838658,ExAC:0.075; 1 92149277 chr1:SNP:872 C T 142 low_coverage DP=17;DP4=10,0,6,1;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs1131243,g1000:0.101238,esp5400:0.145349,ExAC:0.083; 1 92174260 chr1:SNP:873 A G 2245 . DP=88;DP4=0,0,45,43;AD=0,88;TYPE=SNP;DBXREF=dbSNP:rs284878,g1000:0.906749,esp5400:0.936605,ExAC:0.934; 1 92177938 chr1:SNP:874 A G 2171 . DP=86;DP4=1,1,55,29;AD=2,84;TYPE=SNP;DBXREF=dbSNP:rs1805113,g1000:0.279752,esp5400:0.401562,ExAC:0.366; 1 92185657 chr1:SNP:875 C T 1173 . DP=100;DP4=21,23,27,27;AD=44,54;TYPE=SNP;DBXREF=dbSNP:rs1805112,g1000:0.40615,esp5400:0.38325,ExAC:0.417; 1 92200218 chr1:SNP:876 T C 241 low_coverage;off_target DP=19;DP4=8,0,11,0;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs2306887,g1000:0.373403; 1 92200593 chr1:SNP:877 A G 195 off_target DP=23;DP4=1,12,0,10;AD=13,10;TYPE=SNP;DBXREF=dbSNP:rs11165376,g1000:0.616613; 1 92200597 chr1:SNP:878 G A 334 off_target DP=20;DP4=0,6,1,13;AD=6,14;TYPE=SNP;DBXREF=dbSNP:rs12124904,g1000:0.372005; 1 92200627 chr1:SNP:879 T C 448 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs10874913,g1000:0.890575; 1 92200634 chr1:SNP:880 C T 114 low_coverage;off_target DP=14;DP4=0,8,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs11165377,g1000:0.216254; 1 92262874 chr1:SNP:881 T C 1102 . DP=101;DP4=28,20,30,23;AD=48,53;TYPE=SNP;DBXREF=dbSNP:rs2810904,g1000:0.715256,esp5400:0.68126,ExAC:0.663; 1 92712266 chr1:SNP:882 C T 553 off_target DP=21;DP4=0,0,10,11;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs974924,g1000:0.996406; 1 92712861 chr1:INDEL:50 CAG C 335 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=INDEL;DBXREF=dbSNP:rs71586740,g1000:0.171725; 1 92946479 chr1:SNP:883 G A 409 low_coverage DP=16;DP4=0,0,11,5;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs11164605,g1000:0.91893,esp5400:0.852935,ExAC:0.817,clinvar:rs11164605|2; 1 92979354 chr1:SNP:884 A G 1420 . DP=54;DP4=0,0,48,6;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs6603979,g1000:0.920327,esp5400:0.839375,ExAC:0.852; 1 93071048 chr1:SNP:885 G T 421 low_coverage;off_target DP=16;DP4=0,0,3,13;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2050597,g1000:0.950479; 1 93089823 chr1:SNP:886 T C 322 low_coverage DP=13;DP4=0,0,5,8;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7514716,g1000:0.949081,esp5400:0.913274,ExAC:0.922; 1 93160902 chr1:SNP:887 T C 869 . DP=34;DP4=0,0,20,14;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2391199,g1000:0.95028,esp5400:0.912902,ExAC:0.922,MutationTaster:0.988; 1 94367097 chr1:SNP:888 G A 1683 off_target DP=64;DP4=0,0,34,30;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs7515191,g1000:0.420727,esp5400:0.4599,ExAC:0.363; 1 94471075 chr1:SNP:889 A G 842 . DP=34;DP4=0,0,11,23;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1762114,g1000:0.769968,esp5400:0.776631,ExAC:0.889,clinvar:rs1762114|2; 1 94476555 chr1:SNP:890 G A 763 off_target DP=29;DP4=0,0,7,22;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs537831,g1000:0.691494,clinvar:rs537831|1; 1 94487354 chr1:SNP:891 G A 1361 off_target DP=55;DP4=0,1,16,38;AD=1,54;TYPE=SNP;DBXREF=dbSNP:rs472908,g1000:0.588858,esp5400:0.628906,ExAC:0.582,clinvar:rs472908|1|2; 1 94495930 chr1:SNP:892 T C 1210 off_target DP=46;DP4=0,0,35,11;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs547806,g1000:0.988219; 1 94544234 chr1:SNP:893 T C 754 . DP=53;DP4=9,10,21,13;AD=19,34;TYPE=SNP;DBXREF=dbSNP:rs3112831,g1000:0.220847,esp5400:0.258226,ExAC:0.255,clinvar:rs3112831|3|2,MutationTaster:1; 1 94549029 chr1:SNP:894 A G 292 off_target DP=23;DP4=1,9,3,10;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs526016,g1000:0.197684,esp5400:0.241482,ExAC:0.244,clinvar:rs526016|1|2; 1 94568822 chr1:SNP:895 T C 195 low_coverage;off_target DP=11;DP4=0,3,0,8;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs2297636,g1000:0.341254; 1 94576968 chr1:SNP:896 T C 409 low_coverage;off_target DP=17;DP4=0,0,11,5;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2297634,g1000:0.546925,esp5400:0.475181,ExAC:0.518,clinvar:rs2297634|1|2; 1 94578548 chr1:SNP:897 T C 1207 . DP=52;DP4=0,0,37,13;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs4847281,g1000:0.987021,esp5400:0.987823,ExAC:0.996,clinvar:rs4847281|2; 1 94924046 chr1:SNP:898 A G 555 off_target DP=37;DP4=9,4,21,3;AD=13,24;TYPE=SNP;DBXREF=dbSNP:rs2147794,g1000:0.275759; 1 94930345 chr1:SNP:899 G A 721 . DP=91;DP4=28,27,14,22;AD=55,36;TYPE=SNP;DBXREF=dbSNP:rs16946,g1000:0.279952,esp5400:0.372002,ExAC:0.392,clinvar:rs16946|2; 1 94941376 chr1:SNP:900 G A 352 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs681187,g1000:0.669529; 1 94971863 chr1:SNP:901 C T 133 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs2296382,g1000:0.280152; 1 94980671 chr1:SNP:902 C G 684 off_target DP=26;DP4=0,0,18,8;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs3118109,g1000:0.983626,esp5400:0.985393,ExAC:0.996; 1 95001600 chr1:SNP:903 A C 1236 . DP=47;DP4=0,0,28,19;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs698946,g1000:0.982628,esp5400:0.983826,ExAC:0.995; 1 97547831 chr1:SNP:904 G A 383 low_coverage;off_target DP=15;DP4=0,0,13,2;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs290854,g1000:1; 1 97700589 chr1:SNP:905 C T 299 off_target DP=24;DP4=1,10,0,13;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs12137711,g1000:0.0880591,esp5400:0.088585,ExAC:0.118,clinvar:rs12137711|1; 1 97839360 chr1:SNP:906 A T 141 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs762461938; 1 97981242 chr1:SNP:907 T C 195 off_target DP=23;DP4=11,2,8,2;AD=13,10;TYPE=SNP;DBXREF=dbSNP:rs2811178,g1000:0.651757,esp5400:0.604198,ExAC:0.62,clinvar:rs2811178|1; 1 98348885 chr1:SNP:908 G A 1499 . DP=57;DP4=0,0,26,31;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs1801265,g1000:0.739816,esp5400:0.713887,ExAC:0.765,clinvar:rs1801265|1,MutationTaster:1; 1 100316589 chr1:SNP:909 A G 613 . DP=24;DP4=0,0,17,7;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2307130,g1000:0.427117,esp5400:0.415412,ExAC:0.468,clinvar:rs2307130|2; 1 100316765 chr1:SNP:910 C T 840 off_target DP=31;DP4=0,0,1,30;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs663848,g1000:0.76258; 1 100329889 chr1:SNP:911 G C 211 low_coverage;off_target DP=8;DP4=0,0,7,1;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs535461,g1000:0.739617; 1 100336361 chr1:SNP:912 C T 921 . DP=34;DP4=0,0,15,19;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2230306,g1000:0.76258,esp5400:0.76641,ExAC:0.722,clinvar:rs2230306|2; 1 100340225 chr1:SNP:913 G A 971 off_target DP=38;DP4=0,0,14,24;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs634880,g1000:0.743411,esp5400:0.747025,ExAC:0.721,clinvar:rs634880|2; 1 100340827 chr1:SNP:914 T C 350 off_target DP=40;DP4=12,10,6,12;AD=22,18;TYPE=SNP;DBXREF=dbSNP:rs17121466,g1000:0.0313498,esp5400:0.017847,ExAC:0.03,clinvar:rs17121466|2; 1 100342227 chr1:SNP:915 C T 553 off_target DP=21;DP4=0,0,4,17;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs3736295,g1000:0.558307; 1 100343073 chr1:SNP:916 T A 271 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2291637,g1000:0.534545; 1 100343153 chr1:SNP:917 A G 548 off_target DP=41;DP4=9,7,14,11;AD=16,25;TYPE=SNP;DBXREF=dbSNP:rs2291638,g1000:0.284345,esp5400:0.280692,ExAC:0.344,clinvar:rs2291638|2; 1 100345409 chr1:SNP:918 C G 460 low_coverage;off_target DP=18;DP4=0,0,13,5;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2392077,g1000:0.534545; 1 100346741 chr1:SNP:919 T C 971 . DP=38;DP4=0,0,29,9;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs3736296,g1000:0.558506,esp5400:0.500465,ExAC:0.551,clinvar:rs3736296|2; 1 100350383 chr1:SNP:920 G A 296 low_coverage;off_target DP=12;DP4=0,1,0,11;AD=1,11;TYPE=SNP;DBXREF=dbSNP:rs2234707,g1000:0.558706; 1 100353675 chr1:SNP:921 G A 763 off_target DP=29;DP4=0,0,8,21;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs555929,g1000:0.68111,esp5400:0.652073,ExAC:0.689,clinvar:rs555929|2; 1 100357041 chr1:SNP:922 A G 474 low_coverage;off_target DP=18;DP4=0,0,9,9;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2035960,g1000:0.558506; 1 100357141 chr1:SNP:923 T A 1586 off_target DP=62;DP4=0,1,40,21;AD=1,61;TYPE=SNP;DBXREF=dbSNP:rs2035961,g1000:0.534345,esp5400:0.471184,ExAC:0.532,clinvar:rs2035961|2; 1 100358200 chr1:SNP:924 G A 658 off_target DP=25;DP4=0,0,9,16;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs594249,g1000:0.68151,esp5400:0.65238,ExAC:0.689,clinvar:rs594249|2; 1 100376448 chr1:SNP:925 G A 128 low_coverage;off_target DP=12;DP4=1,5,1,5;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs2274570,g1000:0.461262,esp5400:0.456118,ExAC:0.467,clinvar:rs2274570|2; 1 100376456 chr1:SNP:926 T A 138 low_coverage;off_target DP=12;DP4=1,5,1,5;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs1541041,g1000:0.459864; 1 100381869 chr1:SNP:927 G A 204 low_coverage;off_target DP=14;DP4=5,0,8,1;AD=5,9;TYPE=SNP;DBXREF=dbSNP:rs2296885,g1000:0.385184; 1 100661842 chr1:SNP:928 T C 242 . DP=30;DP4=9,8,7,6;AD=17,13;TYPE=SNP;DBXREF=dbSNP:rs75525811,g1000:0.000199681,esp5400:0.001673,ExAC:0.002339,clinvar:rs75525811|0,MutationTaster:1; 1 100662090 chr1:INDEL:51 CTG C 279 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=INDEL;DBXREF=dbSNP:rs10569170,g1000:0.992013; 1 100671866 chr1:SNP:929 T A 174 . DP=38;DP4=17,9,5,6;AD=26,11;TYPE=SNP;DBXREF=dbSNP:rs34229137,g1000:0.268371,esp5400:0.154684,ExAC:0.302,clinvar:rs34229137|2; 1 100672060 chr1:SNP:930 T C 1532 . DP=60;DP4=0,0,30,30;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs12021720,g1000:0.891773,esp5400:0.858431,ExAC:0.914,clinvar:rs12021720|255,MutationTaster:0.001; 1 100715454 chr1:SNP:931 G A 334 off_target DP=24;DP4=3,6,2,13;AD=9,15;TYPE=SNP;DBXREF=dbSNP:rs3806235,g1000:0.72504; 1 101189027 chr1:SNP:932 C G 211 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs1476408,g1000:0.984425; 1 101197289 chr1:SNP:933 A G 256 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3176871,g1000:0.927316; 1 101199979 chr1:SNP:934 A G 947 off_target DP=36;DP4=0,0,28,8;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs3176875,g1000:0.914137; 1 101203827 chr1:SNP:935 G A 1874 . DP=73;DP4=1,0,23,49;AD=1,72;TYPE=SNP;DBXREF=dbSNP:rs3176879,g1000:0.871206,esp5400:0.881369,ExAC:0.937; 1 103352451 chr1:SNP:936 A G 635 . DP=56;DP4=14,11,21,10;AD=25,31;TYPE=SNP;DBXREF=dbSNP:rs2229783,g1000:0.484625,esp5400:0.444971,ExAC:0.58,clinvar:rs2229783|2; 1 103354138 chr1:SNP:937 A G 395 . DP=38;DP4=14,5,9,10;AD=19,19;TYPE=SNP;DBXREF=dbSNP:rs1676486,g1000:0.782947,esp5400:0.806005,ExAC:0.794,clinvar:rs1676486|255|2,MutationTaster:0.399; 1 103354428 chr1:SNP:938 A G 718 . DP=71;DP4=12,24,8,26;AD=36,34;TYPE=SNP;DBXREF=dbSNP:rs1763347,g1000:0.622604,esp5400:0.62084,ExAC:0.723,clinvar:rs1763347|2; 1 103379918 chr1:SNP:939 G A 399 . DP=42;DP4=9,14,7,12;AD=23,19;TYPE=SNP;DBXREF=dbSNP:rs3753841,g1000:0.496605,esp5400:0.448132,ExAC:0.59,clinvar:rs3753841|2,MutationTaster:1; 1 103400314 chr1:SNP:940 T C 145 low_coverage;off_target DP=18;DP4=1,10,1,6;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs2045819,g1000:0.713259; 1 103405892 chr1:SNP:941 G A 670 . DP=53;DP4=13,9,17,14;AD=22,31;TYPE=SNP;DBXREF=dbSNP:rs17127270,g1000:0.122604,esp5400:0.18061,ExAC:0.146,clinvar:rs17127270|2; 1 103428389 chr1:SNP:942 G A 1473 off_target DP=56;DP4=0,0,14,42;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs1841834,g1000:0.948682; 1 103435626 chr1:SNP:943 G A 245 low_coverage;off_target DP=11;DP4=0,0,8,2;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2061710,g1000:0.932708; 1 103444679 chr1:SNP:944 T G 732 off_target DP=27;DP4=0,0,4,23;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs11164649,g1000:0.629193,esp5400:0.548429,ExAC:0.689,clinvar:rs11164649|2; 1 103449598 chr1:SNP:945 G C 383 low_coverage;off_target DP=15;DP4=0,0,13,2;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2615978,g1000:0.948283; 1 103453270 chr1:SNP:946 T A 870 . DP=93;DP4=29,22,21,21;AD=51,42;TYPE=SNP;DBXREF=dbSNP:rs367824632,esp5400:9.3e-05,ExAC:0.0002471,MutationTaster:1; 1 103455217 chr1:SNP:947 C T 639 off_target DP=25;DP4=0,0,8,17;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs1463034,g1000:0.807109; 1 103461508 chr1:SNP:948 T A 2652 off_target DP=101;DP4=0,0,39,62;AD=0,101;TYPE=SNP;DBXREF=dbSNP:rs2622867,g1000:0.923922,esp5400:0.905622,ExAC:0.953,clinvar:rs2622867|2; 1 103462473 chr1:SNP:949 A G 446 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2786125,g1000:0.849441; 1 103463976 chr1:SNP:950 G T 650 off_target DP=24;DP4=0,0,4,20;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2622870,g1000:0.849441,esp5400:0.886615; 1 103467615 chr1:SNP:951 C T 869 off_target DP=33;DP4=0,0,8,25;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2929162,g1000:0.924121; 1 103468609 chr1:SNP:952 A G 474 low_coverage;off_target DP=18;DP4=0,0,15,3;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2251895,g1000:0.924321; 1 103471456 chr1:INDEL:52 CCAT C 742 . DP=94;DP4=28,26,20,16;AD=54,36;TYPE=INDEL;DBXREF=dbSNP:rs71752747,ExAC:0.766,clinvar:rs71752747|255; 1 103471734 chr1:INDEL:53 A AAAATAAATAAAT 136 off_target DP=27;DP4=13,5,1,6;AD=18,7;TYPE=INDEL;DBXREF=dbSNP:rs71592255; 1 103496620 chr1:SNP:953 G T 332 low_coverage;off_target DP=13;DP4=0,0,7,6;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7523441,g1000:0.943091,esp5400:0.920628,ExAC:0.959; 1 103548319 chr1:SNP:954 C G 550 off_target DP=57;DP4=24,6,15,12;AD=30,27;TYPE=SNP;DBXREF=dbSNP:rs11164662,g1000:0.576278,esp5400:0.454903,ExAC:0.565,clinvar:rs11164662|2; 1 107979396 chr1:SNP:955 A C 1832 . DP=73;DP4=1,1,32,39;AD=2,71;TYPE=SNP;DBXREF=dbSNP:rs480392,g1000:0.95028,esp5400:0.955882,ExAC:0.986; 1 107979568 chr1:SNP:956 T G 160 low_coverage;off_target DP=15;DP4=0,7,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs112471440; 1 109428249 chr1:SNP:957 G A 790 off_target DP=58;DP4=2,20,12,24;AD=22,36;TYPE=SNP;DBXREF=dbSNP:rs10857987,g1000:0.298323,esp5400:0.364161,ExAC:0.283; 1 109444298 chr1:SNP:958 A G 198 off_target DP=22;DP4=9,3,8,2;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs10494102,g1000:0.0409345; 1 109461131 chr1:SNP:959 A G 112 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs3754456,g1000:0.0447284; 1 109465165 chr1:INDEL:54 ACTT A 857 . DP=113;DP4=36,31,25,17;AD=67,42;TYPE=INDEL;DBXREF=dbSNP:rs35029887,ExAC:0.291,clinvar:rs35029887|2; 1 109466982 chr1:SNP:960 G A 222 low_coverage;off_target DP=13;DP4=0,4,0,9;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs12404265,g1000:0.0441294; 1 109883576 chr1:INDEL:55 C CAT 329 low_coverage;off_target DP=17;DP4=1,2,0,13;AD=3,13;TYPE=INDEL;DBXREF=dbSNP:rs3217347,g1000:0.740615; 1 109884775 chr1:SNP:961 T G 843 . DP=33;DP4=0,0,15,18;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2228604,g1000:0.685503,esp5400:0.620468,ExAC:0.728; 1 109897103 chr1:SNP:962 A G 1914 . DP=75;DP4=0,0,28,47;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs11142,g1000:0.776358,esp5400:0.707102,ExAC:0.753; 1 110200360 chr1:SNP:963 T C 949 off_target DP=100;DP4=29,21,28,22;AD=50,50;TYPE=SNP;DBXREF=dbSNP:rs560018,g1000:0.154952,esp5400:0.283603,ExAC:0.265; 1 110201580 chr1:SNP:964 C T 2573 off_target DP=98;DP4=0,0,61,37;AD=0,98;TYPE=SNP;DBXREF=dbSNP:rs650985,g1000:0.979633,esp5400:0.955847,ExAC:0.959; 1 110201699 chr1:SNP:965 T C 690 . DP=102;DP4=31,33,21,17;AD=64,38;TYPE=SNP;DBXREF=dbSNP:rs506008,g1000:0.805312,esp5400:0.783017; 1 110201809 chr1:SNP:966 G T 410 off_target DP=40;DP4=1,18,4,17;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs562996,g1000:0.874002,ExAC:0.88,MutationTaster:0; 1 110201812 chr1:SNP:967 A G 249 off_target DP=31;DP4=2,16,3,10;AD=18,13;TYPE=SNP;DBXREF=dbSNP:rs563003,g1000:0.874002,ExAC:0.88,MutationTaster:0; 1 110235772 chr1:SNP:968 C G 705 off_target DP=26;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs430454; 1 110279701 chr1:SNP:969 C T 462 . DP=48;DP4=20,6,17,5;AD=26,22;TYPE=SNP;DBXREF=dbSNP:rs7483,g1000:0.360623,esp5400:0.232199,ExAC:0.341,MutationTaster:0; 1 110279821 chr1:SNP:970 C A 1634 off_target DP=64;DP4=0,0,21,43;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs1537234,g1000:0.486821,esp5400:0.349043,ExAC:0.464; 1 110279914 chr1:SNP:971 C T 229 low_coverage;off_target DP=19;DP4=2,7,1,9;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs1571858,g1000:0.369409; 1 110282972 chr1:SNP:972 G T 737 off_target DP=28;DP4=0,0,9,19;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs1332018,g1000:0.741414,esp5400:0.627396,ExAC:0.612; 1 110466338 chr1:SNP:973 C A 1186 . DP=119;DP4=16,43,16,44;AD=59,60;TYPE=SNP;DBXREF=dbSNP:rs333970,g1000:0.430112,esp5400:0.460309,ExAC:0.556; 1 110466466 chr1:SNP:974 T C 479 . DP=40;DP4=12,5,15,8;AD=17,23;TYPE=SNP;DBXREF=dbSNP:rs1058885,g1000:0.421526,esp5400:0.396821,ExAC:0.38,MutationTaster:0; 1 110466709 chr1:SNP:975 T C 10000 . DP=136;DP4=0,0,70,66;AD=0,136;TYPE=SNP;DBXREF=dbSNP:rs333971,g1000:0.996805,esp5400:0.99684,ExAC:0.999,MutationTaster:0; 1 110467745 chr1:SNP:976 A G 1341 off_target DP=51;DP4=0,0,35,16;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs333972,g1000:0.996805,esp5400:0.99684,ExAC:0.999; 1 110468009 chr1:SNP:977 C A 155 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs3138072,g1000:0.0840655; 1 110603286 chr1:INDEL:56 A AGGTGCTTCCTCCGTGGTGTCCAGGCAGG 356 low_coverage;off_target DP=18;DP4=2,0,13,1;AD=2,14;TYPE=INDEL;DBXREF=dbSNP:rs144523285,g1000:0.719848; 1 110612727 chr1:SNP:978 T C 271 low_coverage;off_target DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs705280,g1000:1; 1 110612925 chr1:SNP:979 G A 556 off_target DP=24;DP4=0,0,4,19;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2274568,g1000:0.693291,esp5400:0.669774,ExAC:0.627; 1 110882444 chr1:SNP:980 A G 511 . DP=20;DP4=0,0,17,3;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs814771,g1000:0.822883,esp5400:0.793107,ExAC:0.757; 1 110883569 chr1:SNP:981 A T 128 low_coverage DP=12;DP4=2,4,4,2;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs3738752,g1000:0.176118,esp5400:0.142592,ExAC:0.196; 1 110998854 chr1:SNP:982 G A 246 . DP=26;DP4=10,4,9,3;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs7514102,g1000:0.441094,esp5400:0.405187,ExAC:0.435,MutationTaster:0.582; 1 111770423 chr1:SNP:983 T G 420 off_target DP=48;DP4=10,17,11,10;AD=27,21;TYPE=SNP;DBXREF=dbSNP:rs755467,g1000:0.690895,esp5400:0.69762,ExAC:0.712; 1 111773568 chr1:SNP:984 G C 480 . DP=37;DP4=6,9,11,11;AD=15,22;TYPE=SNP;DBXREF=dbSNP:rs2255089,g1000:0.404952,esp5400:0.386224,ExAC:0.426; 1 111773600 chr1:SNP:985 A G 419 off_target DP=35;DP4=6,10,7,12;AD=16,19;TYPE=SNP;DBXREF=dbSNP:rs2274232,g1000:0.15615,esp5400:0.068321,ExAC:0.114; 1 111773830 chr1:SNP:986 A T 529 off_target DP=41;DP4=9,7,16,9;AD=16,25;TYPE=SNP;DBXREF=dbSNP:rs2147789,g1000:0.411342,esp5400:0.390593,ExAC:0.428; 1 111778241 chr1:SNP:987 C T 623 off_target DP=23;DP4=0,0,20,3;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2764544,g1000:0.961262,esp5400:0.959658,ExAC:0.989; 1 111778468 chr1:SNP:988 G A 325 off_target DP=22;DP4=4,4,2,12;AD=8,14;TYPE=SNP;DBXREF=dbSNP:rs961364,g1000:0.237021; 1 111778824 chr1:SNP:989 T C 105 low_coverage;off_target DP=11;DP4=1,5,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs2251608,g1000:0.646965,esp5400:0.647683,ExAC:0.68; 1 111783942 chr1:SNP:990 C T 346 . DP=32;DP4=11,5,11,5;AD=16,16;TYPE=SNP;DBXREF=dbSNP:rs56403938,g1000:0.148962,esp5400:0.060885,ExAC:0.114; 1 111783996 chr1:SNP:991 A G 1525 . DP=58;DP4=0,0,33,25;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs2494007,g1000:0.999401,esp5400:0.999442,ExAC:1; 1 111784148 chr1:SNP:992 T G 409 low_coverage;off_target DP=16;DP4=0,0,2,14;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2764551,g1000:1; 1 111785126 chr1:SNP:993 C T 105 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs6668814,g1000:0.148962; 1 111853060 chr1:INDEL:57 A AGCCAATCTAG 337 off_target DP=54;DP4=19,12,12,5;AD=31,17;TYPE=INDEL;DBXREF=dbSNP:rs143789088,g1000:0.107628; 1 111854207 chr1:SNP:994 T C 411 off_target DP=23;DP4=4,2,15,2;AD=6,17;TYPE=SNP;DBXREF=dbSNP:rs4839122,g1000:0.686701; 1 111854741 chr1:SNP:995 A G 385 off_target DP=20;DP4=3,1,10,6;AD=4,16;TYPE=SNP;DBXREF=dbSNP:rs41282490,g1000:0.107827; 1 111854755 chr1:SNP:996 A C 658 off_target DP=25;DP4=0,0,16,9;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs4423003,g1000:0.958067; 1 111854889 chr1:SNP:997 A G 730 . DP=75;DP4=24,14,25,12;AD=38,37;TYPE=SNP;DBXREF=dbSNP:rs41282492,g1000:0.108626,esp5400:0.139485,ExAC:0.107,MutationTaster:0.993; 1 111854895 chr1:SNP:998 G A 500 . DP=69;DP4=24,18,15,12;AD=42,27;TYPE=SNP;DBXREF=dbSNP:rs41282494,g1000:0.107827,esp5400:0.139083,ExAC:0.107,MutationTaster:1; 1 111854938 chr1:SNP:999 G T 911 . DP=88;DP4=34,11,33,10;AD=45,43;TYPE=SNP;DBXREF=dbSNP:rs41282496,g1000:0.107827,esp5400:0.138807,ExAC:0.107,MutationTaster:1; 1 111855149 chr1:SNP:1000 C T 408 off_target DP=34;DP4=0,15,0,19;AD=15,19;TYPE=SNP;DBXREF=dbSNP:rs74108971,g1000:0.107827; 1 111857087 chr1:SNP:1001 C T 684 off_target DP=26;DP4=0,0,20,6;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2786151,g1000:0.55611; 1 111857154 chr1:SNP:1002 T C 1578 . DP=60;DP4=0,0,27,33;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs2786152,g1000:0.655751,esp5400:0.719024,ExAC:0.653; 1 111861714 chr1:SNP:1003 T A 690 off_target DP=27;DP4=0,0,14,13;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs2786161,g1000:0.623602,esp5400:0.682503,ExAC:0.635; 1 111861822 chr1:SNP:1004 G A 523 . DP=66;DP4=25,15,14,12;AD=40,26;TYPE=SNP;DBXREF=dbSNP:rs17027410,g1000:0.0746805,esp5400:0.11108,ExAC:0.098; 1 111861841 chr1:SNP:1005 A G 1543 . DP=57;DP4=0,0,36,21;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs2275253,g1000:0.659145,esp5400:0.722439,ExAC:0.655,MutationTaster:0; 1 111861974 chr1:SNP:1006 T C 945 . DP=37;DP4=0,0,13,24;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2275254,g1000:0.442292,esp5400:0.499907,ExAC:0.508,MutationTaster:0.785; 1 111862078 chr1:SNP:1007 C T 294 . DP=49;DP4=11,21,6,11;AD=32,17;TYPE=SNP;DBXREF=dbSNP:rs12094378,g1000:0.102037,esp5400:0.137014,ExAC:0.105; 1 111862952 chr1:SNP:1008 T G 2364 . DP=90;DP4=0,0,47,43;AD=0,90;TYPE=SNP;DBXREF=dbSNP:rs2256721,g1000:0.657348,esp5400:0.720766,ExAC:0.655,MutationTaster:0.48; 1 111957311 chr1:SNP:1009 G C 111 low_coverage DP=9;DP4=2,2,2,3;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs10067,g1000:0.294928,esp5400:0.187302,ExAC:0.165,MutationTaster:0; 1 111959167 chr1:SNP:1010 G A 194 off_target DP=27;DP4=4,13,3,7;AD=17,10;TYPE=SNP;DBXREF=dbSNP:rs145290311,g1000:0.00898562; 1 111968121 chr1:SNP:1011 C T 139 low_coverage;off_target DP=18;DP4=4,7,2,5;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs1264887,g1000:0.263179,esp5400:0.128942,ExAC:0.153,MutationTaster:0; 1 111969719 chr1:SNP:1012 A G 529 . DP=57;DP4=16,14,10,17;AD=30,27;TYPE=SNP;DBXREF=dbSNP:rs1264894,g1000:0.58147,esp5400:0.484663,ExAC:0.47; 1 112026152 chr1:SNP:1013 C T 115 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs7737,g1000:0.139577; 1 112028577 chr1:SNP:1014 A T 395 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2275796,g1000:0.43111; 1 112029193 chr1:SNP:1015 A G 895 off_target DP=34;DP4=0,0,23,11;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2252739,g1000:0.790735,esp5400:0.796059,ExAC:0.813; 1 112029325 chr1:SNP:1016 A G 1761 off_target DP=67;DP4=0,0,29,38;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs2800906,g1000:0.787939,esp5400:0.793642,ExAC:0.808; 1 112033456 chr1:INDEL:58 GAAA GAAAA 358 off_target DP=42;DP4=1,2,1,35;AD=3,36;TYPE=INDEL;DBXREF=dbSNP:rs3831359,g1000:0.513778; 1 112033515 chr1:SNP:1017 T C 179 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs2252198,g1000:0.513778; 1 112042632 chr1:SNP:1018 A G 2504 . DP=100;DP4=0,1,48,51;AD=1,99;TYPE=SNP;DBXREF=dbSNP:rs2229155,g1000:0.773562,esp5400:0.790853,ExAC:0.806; 1 112045463 chr1:SNP:1019 T A 211 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs12127443,g1000:0.701478; 1 112106444 chr1:SNP:1020 G A 606 off_target DP=23;DP4=0,0,14,9;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs1591712,g1000:0.894768,esp5400:0.895758,ExAC:0.908; 1 112298582 chr1:SNP:1021 A G 589 . DP=60;DP4=8,24,7,21;AD=32,28;TYPE=SNP;DBXREF=dbSNP:rs197392,g1000:0.242412,esp5400:0.27485,ExAC:0.189; 1 112303260 chr1:SNP:1022 A G 423 off_target DP=53;DP4=18,12,17,6;AD=30,23;TYPE=SNP;DBXREF=dbSNP:rs169093,g1000:0.130192,esp5400:0.170048,ExAC:0.112; 1 112305228 chr1:SNP:1023 A G 334 off_target DP=28;DP4=8,4,9,7;AD=12,16;TYPE=SNP;DBXREF=dbSNP:rs519155,g1000:0.166134; 1 112308953 chr1:SNP:1024 T C 622 . DP=59;DP4=16,13,18,12;AD=29,30;TYPE=SNP;DBXREF=dbSNP:rs197412,g1000:0.474441,esp5400:0.481781,ExAC:0.427,MutationTaster:0.002; 1 112308972 chr1:SNP:1025 G A 930 . DP=88;DP4=22,21,27,18;AD=43,45;TYPE=SNP;DBXREF=dbSNP:rs197413,g1000:0.479832,esp5400:0.484941,ExAC:0.427; 1 112309123 chr1:SNP:1026 C A 994 . DP=85;DP4=22,16,22,25;AD=38,47;TYPE=SNP;DBXREF=dbSNP:rs197414,g1000:0.165935,esp5400:0.210766,ExAC:0.127,MutationTaster:1; 1 112309331 chr1:SNP:1027 T C 768 . DP=91;DP4=22,28,18,21;AD=50,39;TYPE=SNP;DBXREF=dbSNP:rs85276,g1000:0.165935,esp5400:0.211006,ExAC:0.127,MutationTaster:0; 1 112320846 chr1:SNP:1028 T G 115 low_coverage;off_target DP=9;DP4=4,0,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs535183,g1000:0.308906; 1 112321032 chr1:SNP:1029 T A 451 off_target DP=46;DP4=12,12,8,14;AD=24,22;TYPE=SNP;DBXREF=dbSNP:rs640029,g1000:0.192692,esp5400:0.244748,ExAC:0.18; 1 113456546 chr1:SNP:1030 A T 343 . DP=43;DP4=25,0,17,1;AD=25,18;TYPE=SNP;DBXREF=dbSNP:rs1049434,g1000:0.676717,esp5400:0.665551,ExAC:0.597,clinvar:rs1049434|2,MutationTaster:1; 1 114357750 chr1:SNP:1031 G A 144 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs1217413,g1000:0.749601; 1 114377093 chr1:SNP:1032 A G 353 off_target DP=46;DP4=8,18,4,16;AD=26,20;TYPE=SNP;DBXREF=dbSNP:rs1599971,g1000:0.701278,esp5400:0.80383,ExAC:0.716; 1 114377568 chr1:SNP:1033 A G 1098 . DP=43;DP4=0,0,22,21;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs2476601,g1000:0.972644,esp5400:0.934281,ExAC:0.933,clinvar:rs2476601|,MutationTaster:1; 1 114397799 chr1:SNP:1034 C T 118 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs3789609,g1000:0.195487; 1 114401231 chr1:SNP:1035 A G 346 off_target DP=24;DP4=6,3,7,8;AD=9,15;TYPE=SNP;DBXREF=dbSNP:rs1217418,g1000:0.515375,esp5400:0.593017,ExAC:0.482; 1 114401904 chr1:SNP:1036 T G 194 off_target DP=31;DP4=12,8,7,4;AD=20,11;TYPE=SNP;DBXREF=dbSNP:rs1217419,g1000:0.511981; 1 115216886 chr1:SNP:1037 C T 362 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6701427,g1000:0.826078; 1 115222434 chr1:SNP:1038 G A 553 off_target DP=21;DP4=0,0,0,21;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs761755,g1000:0.825879; 1 115266306 chr1:SNP:1039 C T 527 off_target DP=20;DP4=0,0,20,0;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2007231,g1000:0.876198; 1 115576023 chr1:SNP:1040 A G 1251 . DP=49;DP4=0,0,25,24;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs10776792,g1000:0.983626,esp5400:0.975739,ExAC:0.971,clinvar:rs10776792|2,MutationTaster:0; 1 115576482 chr1:SNP:1041 C G 195 low_coverage;off_target DP=9;DP4=0,1,8,0;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs28566771,g1000:0.438898; 1 116206423 chr1:SNP:1042 G A 613 . DP=94;DP4=31,29,24,10;AD=60,34;TYPE=SNP;DBXREF=dbSNP:rs4839469,g1000:0.115016,esp5400:0.12428,ExAC:0.142,MutationTaster:0.176; 1 116224925 chr1:SNP:1043 G A 225 off_target DP=28;DP4=14,3,10,1;AD=17,11;TYPE=SNP;DBXREF=dbSNP:rs10923176,g1000:0.677915; 1 116224940 chr1:SNP:1044 C A 307 off_target DP=37;DP4=16,6,13,2;AD=22,15;TYPE=SNP;DBXREF=dbSNP:rs10754330,g1000:0.678315,esp5400:0.636178,ExAC:0.679; 1 116228220 chr1:SNP:1045 C T 107 low_coverage;off_target DP=12;DP4=0,7,0,5;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs12145661,g1000:0.594649; 1 116243877 chr1:SNP:1046 G A 377 . DP=49;DP4=21,8,14,6;AD=29,20;TYPE=SNP;DBXREF=dbSNP:rs7413162,g1000:0.425719,esp5400:0.390407,ExAC:0.383,clinvar:rs7413162|2|2; 1 116283343 chr1:SNP:1047 A G 1839 . DP=68;DP4=0,0,51,17;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs9428083,g1000:0.64357,esp5400:0.706079,ExAC:0.786,clinvar:rs9428083|2; 1 116283526 chr1:SNP:1048 G A 869 off_target DP=34;DP4=0,0,7,27;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs7538337,g1000:0.64357; 1 116311198 chr1:SNP:1049 T C 1029 off_target DP=38;DP4=0,0,0,38;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs4074537,g1000:0.96246,esp5400:0.957775,ExAC:0.987; 1 117910682 chr1:SNP:1050 G A 542 off_target DP=20;DP4=0,0,20,0;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1146297,g1000:0.780152; 1 117944663 chr1:SNP:1051 G A 166 low_coverage;off_target DP=12;DP4=5,0,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs1289940,g1000:0.174321; 1 117944732 chr1:SNP:1052 C A 233 low_coverage;off_target DP=19;DP4=4,4,11,0;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs1289941,g1000:0.174121; 1 117957288 chr1:SNP:1053 A G 448 low_coverage;off_target DP=17;DP4=0,0,16,1;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs1289948,g1000:0.764776,esp5400:0.798974,ExAC:0.752; 1 118065654 chr1:SNP:1054 G A 466 off_target DP=46;DP4=4,17,4,20;AD=21,24;TYPE=SNP;DBXREF=dbSNP:rs41312694,g1000:0.00678914; 1 118526592 chr1:SNP:1055 G A 632 off_target DP=24;DP4=0,0,4,20;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs4347199,g1000:0.850439; 1 118565953 chr1:SNP:1056 G A 10000 . DP=133;DP4=0,0,73,60;AD=0,133;TYPE=SNP;DBXREF=dbSNP:rs10923472,g1000:0.28734,esp5400:0.3628,ExAC:0.394,MutationTaster:0.774; 1 118583408 chr1:SNP:1057 G A 1283 . DP=49;DP4=1,0,21,27;AD=1,48;TYPE=SNP;DBXREF=dbSNP:rs10923477,g1000:0.288538,esp5400:0.367447,ExAC:0.398; 1 118598288 chr1:INDEL:59 GATTAA G 265 off_target DP=26;DP4=13,1,10,2;AD=14,12;TYPE=INDEL;DBXREF=dbSNP:rs77730607,g1000:0.0159744; 1 118617274 chr1:SNP:1058 C T 1053 off_target DP=40;DP4=0,0,17,23;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs1935993,g1000:0.428315,esp5400:0.53505,ExAC:0.466; 1 118623681 chr1:INDEL:60 TACACAC T 397 off_target DP=29;DP4=7,0,15,2;AD=7,17;TYPE=INDEL;DBXREF=dbSNP:rs72288918,g1000:0.391773; 1 118629421 chr1:SNP:1059 A G 642 off_target DP=62;DP4=15,14,16,17;AD=29,33;TYPE=SNP;DBXREF=dbSNP:rs777606155,ExAC:3.295e-05; 1 118644430 chr1:SNP:1060 A G 10000 . DP=141;DP4=1,0,79,61;AD=1,140;TYPE=SNP;DBXREF=dbSNP:rs10754367,g1000:0.563898,esp5400:0.605503,ExAC:0.552; 1 118644524 chr1:SNP:1061 T A 2214 . DP=86;DP4=0,1,32,53;AD=1,85;TYPE=SNP;DBXREF=dbSNP:rs17185492,g1000:0.115815,esp5400:0.147425,ExAC:0.167,MutationTaster:0.465; 1 119466275 chr1:SNP:1062 A G 413 off_target DP=36;DP4=5,11,6,14;AD=16,20;TYPE=SNP;DBXREF=dbSNP:rs4659129,g1000:0.641573,esp5400:0.648912,ExAC:0.658; 1 119466374 chr1:SNP:1063 G T 141 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs1766793,g1000:0.674321; 1 119467127 chr1:SNP:1064 C T 143 low_coverage;off_target DP=9;DP4=3,0,6,0;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs1779437,g1000:0.670327; 1 119469188 chr1:SNP:1065 G T 401 . DP=41;DP4=9,13,9,10;AD=22,19;TYPE=SNP;DBXREF=dbSNP:rs10494217,g1000:0.0844649,esp5400:0.131902,ExAC:0.144,MutationTaster:1; 1 120057158 chr1:SNP:1066 C T 998 . DP=86;DP4=21,19,23,23;AD=40,46;TYPE=SNP;DBXREF=dbSNP:rs6203,g1000:0.366813,esp5400:0.321342,ExAC:0.439; 1 120057246 chr1:SNP:1067 C A 598 . DP=48;DP4=8,13,4,23;AD=21,27;TYPE=SNP;DBXREF=dbSNP:rs1047303,g1000:0.833466,esp5400:0.750372,ExAC:0.755,MutationTaster:0; 1 120254506 chr1:SNP:1068 A G 140 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs561931,g1000:0.698283; 1 120254545 chr1:SNP:1069 G C 275 off_target DP=25;DP4=10,2,12,1;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs562038,g1000:0.817492; 1 120263643 chr1:SNP:1070 T C 228 low_coverage;off_target DP=17;DP4=7,0,9,1;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs550174,g1000:0.316094; 1 120285546 chr1:SNP:1071 G A 2495 . DP=95;DP4=0,0,44,51;AD=0,95;TYPE=SNP;DBXREF=dbSNP:rs543703,g1000:0.722244,esp5400:0.708403,ExAC:0.692; 1 120293568 chr1:SNP:1072 G A 867 off_target DP=32;DP4=0,0,10,22;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs668156,g1000:0.108427,esp5400:0.131554,ExAC:0.132; 1 120468201 chr1:SNP:1073 A T 341 . DP=45;DP4=10,18,5,12;AD=28,17;TYPE=SNP;DBXREF=dbSNP:rs41313282,g1000:0.00219649,esp5400:0.003255,ExAC:0.002949,clinvar:rs41313282|3,MutationTaster:0; 1 120478285 chr1:SNP:1074 T C 263 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs5025718,g1000:0.604433; 1 120512104 chr1:SNP:1075 T C 341 low_coverage;off_target DP=14;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2493409,g1000:0.978634,esp5400:0.97388,ExAC:0.992; 1 120548094 chr1:SNP:1076 T C 192 low_variant_fraction DP=140;DP4=73,52,11,3;AD=125,14;TYPE=SNP;DBXREF=dbSNP:rs201643251,esp5400:9.3e-05; 1 120572547 chr1:SNP:1077 T C 249 low_variant_fraction DP=105;DP4=30,59,5,11;AD=89,16;TYPE=SNP;DBXREF=dbSNP:rs61788900,esp5400:0.321021,MutationTaster:0.999; 1 120572572 chr1:SNP:1078 C T 209 low_variant_fraction DP=78;DP4=18,46,6,8;AD=64,14;TYPE=SNP;DBXREF=dbSNP:rs61788901,esp5400:0.305344,MutationTaster:0.567; 1 120611876 chr1:SNP:1079 C T 248 off_target DP=22;DP4=9,2,11,0;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs11801062; 1 120611964 chr1:SNP:1080 G C 812 . DP=67;DP4=19,11,23,14;AD=30,37;TYPE=SNP;DBXREF=dbSNP:rs11810554,esp5400:0.319633,MutationTaster:0.03; 1 120612006 chr1:SNP:1081 G A 878 . DP=94;DP4=26,23,23,22;AD=49,45;TYPE=SNP;DBXREF=dbSNP:rs4021006,g1000:0.39397,esp5400:0.370355,clinvar:rs4021006|,MutationTaster:1; 1 120612040 chr1:INDEL:61 T TCCTCCGCCG 1057 off_target DP=117;DP4=27,34,27,23;AD=61,50;TYPE=INDEL;DBXREF=dbSNP:rs782658834,ExAC:0.044; 1 145507646 chr1:SNP:1082 G A 1131 off_target DP=104;DP4=21,29,24,30;AD=50,54;TYPE=SNP;DBXREF=dbSNP:rs139428292,g1000:0.00958466,esp5400:0.020733,ExAC:0.018,clinvar:rs139428292|5|5; 1 146656292 chr1:SNP:1083 A G 372 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs4950385,g1000:0.904752; 1 146672906 chr1:SNP:1084 C T 10000 . DP=125;DP4=0,0,47,78;AD=0,125;TYPE=SNP;DBXREF=dbSNP:rs894469,g1000:0.895767,esp5400:0.894776,ExAC:0.921; 1 146673178 chr1:SNP:1085 A G 770 off_target DP=29;DP4=0,0,2,27;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs6683215,g1000:0.970647; 1 146680748 chr1:SNP:1086 A G 132 low_coverage;off_target DP=15;DP4=0,9,0,6;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs28381196,g1000:0.144968; 1 146687250 chr1:SNP:1087 A T 1485 off_target DP=56;DP4=0,0,48,8;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs1822312,g1000:0.959665; 1 146727388 chr1:SNP:1088 G T 720 off_target DP=73;DP4=33,5,31,4;AD=38,35;TYPE=SNP;DBXREF=dbSNP:rs17160051,g1000:0.179313; 1 146728162 chr1:INDEL:62 TA TAA 809 off_target DP=34;DP4=0,1,21,12;AD=1,33;TYPE=INDEL;DBXREF=dbSNP:rs61409326,g1000:0.966853,ExAC:0.967; 1 146736092 chr1:SNP:1089 C T 445 . DP=64;DP4=30,10,18,6;AD=40,24;TYPE=SNP;DBXREF=dbSNP:rs4950315,g1000:0.147165,esp5400:0.169859,ExAC:0.202; 1 146739068 chr1:SNP:1090 T C 662 off_target DP=44;DP4=8,6,17,13;AD=14,30;TYPE=SNP;DBXREF=dbSNP:rs11239963,g1000:0.204273,esp5400:0.238334,ExAC:0.253; 1 146740502 chr1:SNP:1091 C G 574 . DP=58;DP4=11,20,11,16;AD=31,27;TYPE=SNP;DBXREF=dbSNP:rs17356233,g1000:0.147165,esp5400:0.170385,ExAC:0.207,MutationTaster:1; 1 146740576 chr1:SNP:1092 G A 690 off_target DP=26;DP4=0,0,9,17;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs11576360,g1000:0.73722,esp5400:0.797936,ExAC:0.813; 1 146747153 chr1:SNP:1093 T C 2410 off_target DP=91;DP4=0,0,24,67;AD=0,91;TYPE=SNP;DBXREF=dbSNP:rs6680778,g1000:0.717053,esp5400:0.77533,ExAC:0.807; 1 146751782 chr1:SNP:1094 A C 2541 . DP=96;DP4=0,0,40,56;AD=0,96;TYPE=SNP;DBXREF=dbSNP:rs7547279,g1000:0.967851,esp5400:0.954081,ExAC:0.966; 1 146759306 chr1:SNP:1095 T C 314 . DP=27;DP4=8,4,11,4;AD=12,15;TYPE=SNP;DBXREF=dbSNP:rs6703892,g1000:0.147564,esp5400:0.169362,ExAC:0.207; 1 146763089 chr1:SNP:1096 G A 317 off_target DP=30;DP4=13,2,14,1;AD=15,15;TYPE=SNP;DBXREF=dbSNP:rs10900333,g1000:0.823882; 1 146766069 chr1:INDEL:63 C CAT 714 off_target DP=31;DP4=0,0,16,11;AD=0,27;TYPE=INDEL;DBXREF=dbSNP:rs71083827,g1000:0.968051,ExAC:0.966; 1 146767149 chr1:SNP:1097 G T 2568 . DP=97;DP4=0,0,36,61;AD=0,97;TYPE=SNP;DBXREF=dbSNP:rs4950394,g1000:0.968051,esp5400:0.95501,ExAC:0.967,MutationTaster:0; 1 146767320 chr1:SNP:1098 A G 125 low_coverage;off_target DP=14;DP4=0,8,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs6537,g1000:0.823882; 1 146767353 chr1:SNP:1099 G A 106 low_coverage;off_target DP=13;DP4=0,8,0,5;AD=8,5;TYPE=SNP;DBXREF=dbSNP:rs6538,g1000:0.202077; 1 147083744 chr1:SNP:1100 C T 435 off_target DP=25;DP4=3,4,6,12;AD=7,18;TYPE=SNP;DBXREF=dbSNP:rs677977,g1000:0.305911,esp5400:0.290662; 1 147085066 chr1:SNP:1101 G A 521 off_target DP=48;DP4=3,21,2,22;AD=24,24;TYPE=SNP;DBXREF=dbSNP:rs35669952,g1000:0.186701; 1 147086504 chr1:SNP:1102 A C 249 off_target DP=20;DP4=2,7,1,10;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs7512513,g1000:0.334864; 1 147096794 chr1:SNP:1103 A G 1698 off_target DP=66;DP4=0,0,11,55;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs867270,g1000:0.838259,esp5400:0.88737,ExAC:0.864; 1 147096828 chr1:SNP:1104 C G 1405 off_target DP=53;DP4=0,0,4,49;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs946902,g1000:0.963458; 1 147230978 chr1:SNP:1105 G A 1639 . DP=197;DP4=47,64,35,51;AD=111,86;TYPE=SNP;DBXREF=dbSNP:rs2232191,g1000:0.0163738,esp5400:0.005112,ExAC:0.008986; 1 147381444 chr1:SNP:1106 A C 350 off_target DP=28;DP4=1,11,0,16;AD=12,16;TYPE=SNP;DBXREF=dbSNP:rs1532399,g1000:0.63758; 1 150300727 chr1:SNP:1107 T C 896 off_target DP=39;DP4=0,0,28,9;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs834225,g1000:0.502796,esp5400:0.638465; 1 150310827 chr1:SNP:1108 A C 774 off_target DP=57;DP4=8,13,16,20;AD=21,36;TYPE=SNP;DBXREF=dbSNP:rs11806171,g1000:0.0433307,esp5400:0.083752,ExAC:0.071; 1 150480571 chr1:SNP:1109 G A 235 low_coverage;off_target DP=19;DP4=7,1,8,3;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs12724450,g1000:0.0533147; 1 150482738 chr1:SNP:1110 G A 341 off_target DP=23;DP4=3,5,7,8;AD=8,15;TYPE=SNP;DBXREF=dbSNP:rs11205387,g1000:0.25; 1 150483355 chr1:SNP:1111 C T 104 low_coverage DP=14;DP4=9,0,5,0;AD=9,5;TYPE=SNP;DBXREF=dbSNP:rs3737240,g1000:0.223842,esp5400:0.296761,ExAC:0.337,MutationTaster:0; 1 150484004 chr1:SNP:1112 G A 429 . DP=46;DP4=21,4,17,4;AD=25,21;TYPE=SNP;DBXREF=dbSNP:rs11801190,g1000:0.0994409,esp5400:0.134876,ExAC:0.085; 1 150484987 chr1:SNP:1113 G A 797 . DP=84;DP4=20,26,17,21;AD=46,38;TYPE=SNP;DBXREF=dbSNP:rs13294,g1000:0.266573,esp5400:0.343279,ExAC:0.353,MutationTaster:0.09; 1 150526044 chr1:SNP:1114 G C 2978 . DP=116;DP4=1,1,62,52;AD=2,114;TYPE=SNP;DBXREF=dbSNP:rs41317515,g1000:0.528355,esp5400:0.545919,ExAC:0.523,clinvar:rs41317515|2,MutationTaster:0; 1 150526406 chr1:SNP:1115 C T 693 . DP=73;DP4=21,17,21,14;AD=38,35;TYPE=SNP;DBXREF=dbSNP:rs6681639,g1000:0.347244,esp5400:0.356622,ExAC:0.289,clinvar:rs6681639|2; 1 150528090 chr1:INDEL:64 G GACAC 434 off_target DP=22;DP4=0,5,2,15;AD=5,17;TYPE=INDEL;DBXREF=dbSNP:rs146160043,ExAC:0.645; 1 150528118 chr1:INDEL:65 T TACAC 225 low_coverage;off_target DP=13;DP4=0,3,0,9;AD=3,9;TYPE=INDEL;DBXREF=dbSNP:rs149100901,g1000:0.689097; 1 150529322 chr1:INDEL:66 T TAA 475 off_target DP=21;DP4=0,2,12,6;AD=2,18;TYPE=INDEL;DBXREF=dbSNP:rs34379037,g1000:0.945887; 1 150531008 chr1:SNP:1116 T C 2119 . DP=80;DP4=0,0,46,34;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs10888382,g1000:0.814497,esp5400:0.864634,ExAC:0.907,clinvar:rs10888382|2; 1 150531050 chr1:SNP:1117 G A 953 . DP=76;DP4=19,13,18,26;AD=32,44;TYPE=SNP;DBXREF=dbSNP:rs10749657,g1000:0.878395,esp5400:0.841112,ExAC:0.867,clinvar:rs10749657|2; 1 150531170 chr1:SNP:1118 C T 1147 . DP=42;DP4=0,0,13,29;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs10749658,g1000:0.921526,esp5400:0.916155,ExAC:0.976; 1 150550019 chr1:INDEL:67 TA TAA 675 off_target DP=31;DP4=0,1,7,22;AD=1,29;TYPE=INDEL;DBXREF=dbSNP:rs11428742,g1000:1,ExAC:1; 1 150600181 chr1:SNP:1119 C T 437 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2280078,g1000:0.612021; 1 150771703 chr1:SNP:1120 T C 1194 . DP=45;DP4=0,0,23,22;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs10788796,g1000:0.963259,esp5400:0.977319,ExAC:0.989; 1 151315287 chr1:SNP:1121 G C 1373 . DP=55;DP4=0,1,34,20;AD=1,54;TYPE=SNP;DBXREF=dbSNP:rs2233854,g1000:0.0634984,esp5400:0.115635,ExAC:0.119,MutationTaster:0.016; 1 151316161 chr1:SNP:1122 G A 2126 . DP=82;DP4=0,0,45,36;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs1752386,g1000:0.978035,esp5400:0.975827,ExAC:0.993; 1 151379250 chr1:SNP:1123 G A 531 off_target DP=20;DP4=0,0,1,19;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2274535,g1000:0.492013; 1 151381320 chr1:INDEL:68 GAAAAAAA GAAAAAA 344 off_target DP=48;DP4=2,3,20,23;AD=5,43;TYPE=INDEL;DBXREF=dbSNP:rs3831142,g1000:0.492013,ExAC:0.674; 1 151384711 chr1:SNP:1124 A G 574 off_target DP=21;DP4=0,0,15,6;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1887545,g1000:0.784145; 1 151384733 chr1:SNP:1125 G A 796 off_target DP=30;DP4=0,0,18,12;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs3748550,g1000:0.784145,esp5400:0.828872,ExAC:0.798; 1 151395782 chr1:SNP:1126 T C 319 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2274533,g1000:0.552516; 1 151396037 chr1:SNP:1127 A C 650 . DP=26;DP4=0,0,12,14;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2274534,g1000:0.490815,esp5400:0.674103,ExAC:0.673; 1 151400942 chr1:SNP:1128 A C 1133 off_target DP=44;DP4=0,0,15,29;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs11204811,g1000:0.503195; 1 151402045 chr1:SNP:1129 A G 528 off_target DP=22;DP4=0,0,10,11;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs6587577,g1000:0.758986,esp5400:0.805261,ExAC:0.793; 1 152484129 chr1:SNP:1130 G A 647 . DP=92;DP4=33,24,19,16;AD=57,35;TYPE=SNP;DBXREF=dbSNP:rs2105117,g1000:0.521965,esp5400:0.536531,ExAC:0.61,MutationTaster:0; 1 153233488 chr1:INDEL:69 C CGGCGGT 176 . DP=34;DP4=15,7,6,3;AD=22,9;TYPE=INDEL;DBXREF=dbSNP:rs150026164,g1000:0.19389,ExAC:0.175; 1 153233510 chr1:SNP:1131 A G 122 low_coverage DP=15;DP4=3,6,4,2;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs6661601,g1000:0.182109,esp5400:0.213646,ExAC:0.268,MutationTaster:0; 1 153233701 chr1:SNP:1132 A C 168 low_coverage DP=12;DP4=5,0,4,3;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs1143390,g1000:0.398163,esp5400:0.195763,ExAC:0.168; 1 153233991 chr1:INDEL:70 A ACTCTGGCGGCGG 128 low_coverage DP=17;DP4=5,5,3,3;AD=10,6;TYPE=INDEL;DBXREF=dbSNP:rs561634896,g1000:0.648363,ExAC:0.586; 1 153234295 chr1:SNP:1133 G A 581 . DP=78;DP4=29,19,17,13;AD=48,30;TYPE=SNP;DBXREF=dbSNP:rs12043009,g1000:0.194289,esp5400:0.210789,ExAC:0.18,MutationTaster:0.004; 1 153587308 chr1:SNP:1134 C T 590 off_target DP=21;DP4=0,0,19,2;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs11548104,g1000:0.662141; 1 153588208 chr1:SNP:1135 G A 1133 off_target DP=44;DP4=0,0,30,14;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs9792963,g1000:0.422324; 1 153588279 chr1:SNP:1136 G A 2040 off_target DP=77;DP4=0,0,37,40;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs9792967,g1000:0.422324,esp5400:0.368563,ExAC:0.478; 1 153653250 chr1:SNP:1137 G A 153 low_coverage;off_target DP=15;DP4=5,3,1,6;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs28730725,g1000:0.00938498; 1 153656352 chr1:SNP:1138 T G 398 low_coverage;off_target DP=15;DP4=0,0,3,12;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs9662664,g1000:0.464257,esp5400:0.386909,ExAC:0.476; 1 153660514 chr1:INDEL:71 ACCCCCCC ACCCCCC 446 . DP=73;DP4=6,2,36,25;AD=8,61;TYPE=INDEL;DBXREF=dbSNP:rs11295572,g1000:0.470248,ExAC:0.473; 1 153661374 chr1:INDEL:72 CGG CG 221 off_target DP=24;DP4=3,1,18,2;AD=4,20;TYPE=INDEL;DBXREF=dbSNP:rs34402066,g1000:0.46865; 1 153665919 chr1:INDEL:73 TCCC TCCCC 701 off_target DP=70;DP4=3,1,14,51;AD=4,65;TYPE=INDEL;DBXREF=dbSNP:rs5777879,g1000:0.557508,ExAC:0.542; 1 154141908 chr1:SNP:1139 A G 618 off_target DP=24;DP4=0,0,11,13;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs4845364,g1000:0.732228,esp5400:0.604109,ExAC:0.606,clinvar:rs4845364|2; 1 154561261 chr1:SNP:1140 G C 246 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs9427095,g1000:0.911342; 1 154561925 chr1:SNP:1141 C T 431 . DP=59;DP4=19,17,9,14;AD=36,23;TYPE=SNP;DBXREF=dbSNP:rs1127309,g1000:0.28095,esp5400:0.299777,ExAC:0.274,clinvar:rs1127309|2; 1 154573967 chr1:SNP:1142 T C 1315 . DP=140;DP4=34,41,30,35;AD=75,65;TYPE=SNP;DBXREF=dbSNP:rs2229857,g1000:0.622604,esp5400:0.604573,ExAC:0.696,clinvar:rs2229857|2,MutationTaster:0; 1 154574820 chr1:SNP:1143 T C 1538 . DP=58;DP4=0,0,37,21;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs1466731,g1000:0.996206,esp5400:0.995538,ExAC:0.999,MutationTaster:0; 1 154575040 chr1:SNP:1144 C T 10000 . DP=147;DP4=0,0,50,97;AD=0,147;TYPE=SNP;DBXREF=dbSNP:rs1802645,g1000:0.997005,esp5400:0.997211,ExAC:0.999,clinvar:rs1802645|2; 1 154580348 chr1:INDEL:74 G GAC 110 low_coverage;off_target DP=13;DP4=5,1,4,1;AD=6,5;TYPE=INDEL;DBXREF=dbSNP:rs71586026,g1000:0.271765; 1 154580458 chr1:SNP:1145 C A 1012 . DP=113;DP4=30,31,19,33;AD=61,52;TYPE=SNP;DBXREF=dbSNP:rs58655370,g1000:0.304712,esp5400:0.285076,ExAC:0.234,clinvar:rs58655370|2; 1 154744807 chr1:SNP:1146 C G 799 . DP=31;DP4=0,0,0,31;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs1051614,g1000:0.535343,esp5400:0.581056,ExAC:0.58; 1 154744852 chr1:SNP:1147 A G 383 low_coverage DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs1131820,g1000:0.779153,esp5400:0.708868,ExAC:0.76; 1 154832304 chr1:SNP:1148 T C 301 low_coverage;off_target DP=11;DP4=0,0,3,8;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4845397,g1000:0.717252; 1 154832322 chr1:SNP:1149 A C 212 low_coverage;off_target DP=8;DP4=0,0,1,7;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs1218586,g1000:0.957867; 1 154842199 chr1:INDEL:75 G GGCTGCTGCT 103 . DP=78;DP4=6,3,5,2;AD=9,7;TYPE=INDEL;DBXREF=dbSNP:rs3831942,ExAC:0.033; 1 154842199 chr1:INDEL:76 G GGCTGCTGCTGCT 1162 . DP=78;DP4=6,3,40,9;AD=9,49;TYPE=INDEL;DBXREF=dbSNP:rs3831942,ExAC:0.053; 1 155161794 chr1:SNP:1150 C T 101 low_coverage DP=10;DP4=4,0,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs147048677,g1000:0.0257588,ExAC:0.047; 1 155205669 chr1:SNP:1151 G T 570 off_target DP=23;DP4=0,1,3,19;AD=1,22;TYPE=SNP;DBXREF=dbSNP:rs3115534,g1000:0.940895,esp5400:0.943287,ExAC:0.983,clinvar:rs3115534|2; 1 155735012 chr1:SNP:1152 T C 1215 . DP=120;DP4=30,31,31,28;AD=61,59;TYPE=SNP;DBXREF=dbSNP:rs2297775,g1000:0.354233,esp5400:0.27031,ExAC:0.334,MutationTaster:0; 1 155737385 chr1:SNP:1153 C T 1485 off_target DP=56;DP4=0,0,16,40;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs849712,g1000:0.927915; 1 155753676 chr1:SNP:1154 A G 847 off_target DP=31;DP4=0,0,26,5;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs822019,g1000:0.819888; 1 155755097 chr1:SNP:1155 G A 2146 off_target DP=81;DP4=0,0,45,36;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs822021,g1000:0.928514,esp5400:0.922104,ExAC:0.979; 1 155755239 chr1:SNP:1156 T C 1262 off_target DP=49;DP4=0,0,13,36;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs822022,g1000:0.86242,esp5400:0.882189; 1 155764808 chr1:SNP:1157 C G 249 off_target DP=20;DP4=7,1,10,2;AD=8,12;TYPE=SNP;DBXREF=dbSNP:rs3738591,g1000:0.210463,esp5400:0.039784,ExAC:0.144; 1 155783763 chr1:SNP:1158 C T 301 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs822012,g1000:0.820887; 1 155784372 chr1:SNP:1159 G A 345 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs822013,g1000:0.928115; 1 155785578 chr1:INDEL:77 CAACT C 1348 off_target DP=54;DP4=0,0,30,20;AD=0,50;TYPE=INDEL;DBXREF=dbSNP:rs148569012,g1000:0.86262,ExAC:0.925; 1 155823002 chr1:SNP:1160 T C 383 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs822491,g1000:0.9998; 1 155829511 chr1:SNP:1161 C T 708 off_target DP=68;DP4=28,6,24,10;AD=34,34;TYPE=SNP;DBXREF=dbSNP:rs3820594,g1000:0.348842,esp5400:0.260086,ExAC:0.328; 1 155837865 chr1:SNP:1162 G C 3074 . DP=118;DP4=1,0,67,50;AD=1,117;TYPE=SNP;DBXREF=dbSNP:rs822522,g1000:0.954673,esp5400:0.953709,ExAC:0.988,MutationTaster:1; 1 155838267 chr1:SNP:1163 T C 10000 . DP=129;DP4=0,0,71,58;AD=0,129;TYPE=SNP;DBXREF=dbSNP:rs822521,g1000:0.93111,esp5400:0.924057,ExAC:0.98; 1 156107534 chr1:SNP:1164 C T 908 . DP=87;DP4=18,23,19,26;AD=41,45;TYPE=SNP;DBXREF=dbSNP:rs4641,g1000:0.220248,esp5400:0.193519,ExAC:0.162,clinvar:rs4641|255|1|2|2; 1 156131050 chr1:SNP:1165 A T 134 low_coverage;off_target DP=12;DP4=5,0,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs191795474,g1000:0.0994409; 1 156132909 chr1:INDEL:78 GCA G 305 off_target DP=33;DP4=5,14,1,13;AD=19,14;TYPE=INDEL;DBXREF=dbSNP:rs143862668,g1000:0.123802,ExAC:0.177; 1 156146218 chr1:SNP:1166 C T 284 low_coverage DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs12401573,g1000:0.430911,esp5400:0.528909,ExAC:0.526,clinvar:rs12401573|2; 1 156496188 chr1:SNP:1167 A G 1236 off_target DP=48;DP4=0,0,40,8;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs6427315,g1000:0.938299; 1 156503541 chr1:SNP:1168 T C 1424 off_target DP=57;DP4=0,0,31,25;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs6699212,g1000:0.98762,esp5400:0.985499,ExAC:0.995; 1 156509552 chr1:SNP:1169 C G 281 low_coverage;off_target DP=10;DP4=0,0,6,4;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1171570,g1000:0.98762; 1 156520173 chr1:SNP:1170 T A 1114 off_target DP=42;DP4=0,0,19,23;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs1778819,g1000:0.988019,esp5400:0.986243,ExAC:0.996; 1 156524344 chr1:SNP:1171 T G 164 low_coverage;off_target DP=6;DP4=0,0,0,6;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs6686323,g1000:0.960064; 1 156526234 chr1:SNP:1172 C T 525 off_target DP=21;DP4=0,0,20,1;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2489139,g1000:0.960064; 1 156526387 chr1:SNP:1173 C G 10000 . DP=135;DP4=0,0,66,69;AD=0,135;TYPE=SNP;DBXREF=dbSNP:rs11264498,g1000:0.378195,esp5400:0.498606,ExAC:0.536,MutationTaster:1; 1 156526444 chr1:SNP:1174 T C 3148 . DP=119;DP4=0,0,44,75;AD=0,119;TYPE=SNP;DBXREF=dbSNP:rs2488269,g1000:0.960064,esp5400:0.956683,ExAC:0.988,MutationTaster:0.055; 1 156532250 chr1:SNP:1175 T C 212 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs1778828,g1000:0.959864; 1 156532252 chr1:SNP:1176 C T 266 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1778827,g1000:0.960064; 1 156532344 chr1:SNP:1177 T G 1501 off_target DP=55;DP4=0,0,38,17;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs7548309,g1000:0.571286,esp5400:0.681725,ExAC:0.643; 1 156532733 chr1:SNP:1178 T C 410 low_coverage;off_target DP=15;DP4=0,0,12,3;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs4661183,g1000:0.386781; 1 156532908 chr1:SNP:1179 C A 698 off_target DP=31;DP4=2,0,21,8;AD=2,29;TYPE=SNP;DBXREF=dbSNP:rs16837492,g1000:0.558107,esp5400:0.67243,ExAC:0.637; 1 156532977 chr1:SNP:1180 T C 10000 . DP=151;DP4=0,0,88,63;AD=0,151;TYPE=SNP;DBXREF=dbSNP:rs1171547,g1000:0.959864,esp5400:0.956405,ExAC:0.988; 1 156534525 chr1:SNP:1181 A C 1955 off_target DP=76;DP4=0,0,27,49;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs4661184,g1000:0.501997,esp5400:0.617866,ExAC:0.614; 1 156534539 chr1:SNP:1182 G A 1405 off_target DP=53;DP4=0,0,16,37;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs4661185,g1000:0.557308,esp5400:0.68893; 1 156536123 chr1:SNP:1183 T C 345 low_coverage;off_target DP=13;DP4=0,0,9,4;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2066378,g1000:0.959864; 1 156536133 chr1:SNP:1184 A G 410 low_coverage;off_target DP=15;DP4=0,0,11,4;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs4382715,g1000:0.959864,esp5400:0.956405,ExAC:0.988; 1 156536221 chr1:SNP:1185 G C 1061 . DP=40;DP4=0,0,27,13;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2066377,g1000:0.959864,esp5400:0.956405,ExAC:0.988; 1 156536251 chr1:SNP:1186 T C 1273 . DP=48;DP4=0,0,31,17;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs947662,g1000:0.959864,esp5400:0.956405,ExAC:0.988; 1 156536353 chr1:SNP:1187 A G 902 off_target DP=34;DP4=0,0,9,25;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs947663,g1000:0.959864,esp5400:0.956497,ExAC:0.988; 1 156539154 chr1:SNP:1188 T C 1698 off_target DP=66;DP4=0,0,43,23;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs6427319,g1000:0.990815,esp5400:0.988381,ExAC:0.995; 1 156785617 chr1:SNP:1189 G A 10000 . DP=138;DP4=0,0,75,63;AD=0,138;TYPE=SNP;DBXREF=dbSNP:rs1800601,g1000:0.636981,esp5400:0.618888,ExAC:0.668; 1 156785762 chr1:INDEL:79 AG A 840 off_target DP=44;DP4=2,6,3,32;AD=8,35;TYPE=INDEL;DBXREF=dbSNP:rs11325907,g1000:0.580871,ExAC:0.617; 1 156785771 chr1:SNP:1190 A G 796 off_target DP=30;DP4=0,0,2,28;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs7546838,g1000:0.616014,esp5400:0.575958,ExAC:0.628; 1 156785779 chr1:SNP:1191 G A 730 off_target DP=26;DP4=0,0,0,26;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs1800600,g1000:0.662939,esp5400:0.641688,ExAC:0.664; 1 156837847 chr1:SNP:1192 T C 291 off_target DP=24;DP4=9,2,8,5;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs16837724,g1000:0.0161741,esp5400:0.03997,ExAC:0.038; 1 156838141 chr1:SNP:1193 T C 187 low_coverage;off_target DP=15;DP4=4,3,5,3;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs1800879,g1000:0.711661; 1 156841674 chr1:SNP:1194 G A 328 off_target DP=31;DP4=1,14,1,15;AD=15,16;TYPE=SNP;DBXREF=dbSNP:rs1410082,g1000:0.115016; 1 156848995 chr1:SNP:1195 C T 1246 . DP=47;DP4=0,0,33,14;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs6337,g1000:0.334065,esp5400:0.553004,ExAC:0.57,clinvar:rs6337|2; 1 156875092 chr1:SNP:1196 G A 637 off_target DP=24;DP4=0,0,14,10;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs4661074,g1000:0.394968,esp5400:0.603923,ExAC:0.626; 1 156875097 chr1:SNP:1197 G A 478 low_coverage;off_target DP=18;DP4=0,0,8,10;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4661075,g1000:0.442492,esp5400:0.63469,ExAC:0.643; 1 156875107 chr1:SNP:1198 C A 683 . DP=25;DP4=0,0,14,11;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs2644590,g1000:0.391973,esp5400:0.600205,ExAC:0.625; 1 156875985 chr1:SNP:1199 G A 250 low_coverage;off_target DP=10;DP4=0,0,8,2;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2644593,g1000:0.972644; 1 156877457 chr1:SNP:1200 T C 1908 . DP=72;DP4=0,0,37,35;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs1952294,g1000:0.975839,esp5400:0.976947,ExAC:0.994,MutationTaster:0; 1 156883493 chr1:SNP:1201 G A 375 . DP=64;DP4=23,20,14,7;AD=43,21;TYPE=SNP;DBXREF=dbSNP:rs11264581,g1000:0.231829,esp5400:0.143986,ExAC:0.215,MutationTaster:0; 1 156883546 chr1:SNP:1202 A G 797 . DP=81;DP4=20,21,27,13;AD=41,40;TYPE=SNP;DBXREF=dbSNP:rs12137505,g1000:0.451078,esp5400:0.355549,ExAC:0.433,MutationTaster:0; 1 156884365 chr1:SNP:1203 T C 187 low_coverage;off_target DP=15;DP4=7,0,8,0;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs749256,g1000:0.910343; 1 156907081 chr1:SNP:1204 T C 1066 . DP=83;DP4=18,16,27,22;AD=34,49;TYPE=SNP;DBXREF=dbSNP:rs945508,g1000:0.76238,esp5400:0.651422,ExAC:0.639,MutationTaster:0; 1 156907115 chr1:SNP:1205 T C 809 . DP=62;DP4=11,13,17,21;AD=24,38;TYPE=SNP;DBXREF=dbSNP:rs868188,g1000:0.40655,esp5400:0.311675,ExAC:0.394,MutationTaster:0.075; 1 156914240 chr1:INDEL:80 CCATT C 743 off_target DP=111;DP4=42,30,16,21;AD=72,37;TYPE=INDEL;DBXREF=dbSNP:rs5778015,g1000:0.480431,ExAC:0.412; 1 156918137 chr1:SNP:1206 C T 1174 . DP=146;DP4=53,33,40,20;AD=86,60;TYPE=SNP;DBXREF=dbSNP:rs12138039,g1000:0.0151757,esp5400:0.033463,ExAC:0.039; 1 156933345 chr1:INDEL:81 CT CTTTTTTTT 269 low_variant_fraction DP=54;DP4=23,28,0,2;AD=51,2;TYPE=INDEL; 1 156933355 chr1:INDEL:82 AT ATTTTTTTTT 147 low_variant_fraction DP=39;DP4=19,16,0,1;AD=35,1;TYPE=INDEL; 1 156939175 chr1:SNP:1207 C T 1409 off_target DP=105;DP4=18,21,26,40;AD=39,66;TYPE=SNP;DBXREF=dbSNP:rs1336149,g1000:0.715256,esp5400:0.585162,ExAC:0.553; 1 156948956 chr1:INDEL:83 CCCT C 742 off_target DP=56;DP4=15,8,20,12;AD=23,32;TYPE=INDEL;DBXREF=dbSNP:rs3831270,g1000:0.234026; 1 156954267 chr1:SNP:1208 C T 942 off_target DP=106;DP4=20,39,16,31;AD=59,47;TYPE=SNP;DBXREF=dbSNP:rs6427339,g1000:0.591853,esp5400:0.489655,ExAC:0.372; 1 156954384 chr1:SNP:1209 T C 219 low_coverage;off_target DP=16;DP4=0,6,1,9;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs6427340,g1000:0.549321; 1 156956057 chr1:SNP:1210 T C 211 low_coverage;off_target DP=16;DP4=0,5,1,9;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs3737599,g1000:0.23742; 1 158224575 chr1:SNP:1211 C G 118 low_coverage;off_target DP=15;DP4=1,8,2,4;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs6699561; 1 158582646 chr1:SNP:1212 T C 1486 . DP=61;DP4=1,1,34,25;AD=2,59;TYPE=SNP;DBXREF=dbSNP:rs2251969,g1000:0.504792,esp5400:0.515031,ExAC:0.538,clinvar:rs2251969|2; 1 158582838 chr1:SNP:1213 G C 141 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs2157691,g1000:0.252196; 1 158584091 chr1:SNP:1214 A G 823 . DP=31;DP4=0,0,18,13;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs952094,g1000:0.50619,esp5400:0.512291,ExAC:0.538,clinvar:rs952094|2,MutationTaster:0; 1 158585230 chr1:SNP:1215 C T 492 off_target DP=54;DP4=10,18,10,15;AD=28,25;TYPE=SNP;DBXREF=dbSNP:rs2518491,g1000:0.231629,esp5400:0.212934,ExAC:0.27; 1 158585355 chr1:SNP:1216 T C 146 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs2852634,g1000:0.23143; 1 158585415 chr1:SNP:1217 C T 145 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs2779116,g1000:0.276757; 1 158587143 chr1:SNP:1218 C T 108 low_coverage;off_target DP=12;DP4=6,0,5,0;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs2022002,g1000:0.236422; 1 158587390 chr1:SNP:1219 C T 2205 off_target DP=85;DP4=1,0,28,56;AD=1,84;TYPE=SNP;DBXREF=dbSNP:rs857716,g1000:0.491014,esp5400:0.490095,ExAC:0.533,clinvar:rs857716|2; 1 158587784 chr1:SNP:1220 T G 823 off_target DP=31;DP4=0,0,20,11;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs857717,g1000:0.9998,esp5400:0.999261,ExAC:1; 1 158587858 chr1:SNP:1221 G A 360 off_target DP=43;DP4=14,11,11,7;AD=25,18;TYPE=SNP;DBXREF=dbSNP:rs28525570,g1000:0.227835,esp5400:0.249895,ExAC:0.256,clinvar:rs28525570|2; 1 158588916 chr1:SNP:1222 C G 119 low_coverage;off_target DP=17;DP4=11,0,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs7553252,g1000:0.321286; 1 158592935 chr1:SNP:1223 G A 1716 . DP=119;DP4=21,21,41,36;AD=42,77;TYPE=SNP;DBXREF=dbSNP:rs3753068,g1000:0.310503,esp5400:0.327699,ExAC:0.295,clinvar:rs3753068|2; 1 158592989 chr1:INDEL:84 AAGATCAGGAG A 439 . DP=87;DP4=35,28,10,13;AD=63,23;TYPE=INDEL;DBXREF=dbSNP:rs554241455,g1000:0.000599042,ExAC:0.002855; 1 158597507 chr1:SNP:1224 G C 624 . DP=70;DP4=17,22,11,20;AD=39,31;TYPE=SNP;DBXREF=dbSNP:rs3737515,g1000:0.227835,esp5400:0.250052,ExAC:0.256,clinvar:rs3737515|2,MutationTaster:0.968; 1 158606449 chr1:SNP:1225 G T 925 . DP=56;DP4=11,5,23,17;AD=16,40;TYPE=SNP;DBXREF=dbSNP:rs3738791,g1000:0.320487,esp5400:0.338603,ExAC:0.298,clinvar:rs3738791|2; 1 158607788 chr1:SNP:1226 T G 1010 off_target DP=37;DP4=0,0,36,1;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2518492,g1000:0.9998,esp5400:0.998967,ExAC:1; 1 158607935 chr1:SNP:1227 T G 1939 . DP=251;DP4=74,70,50,57;AD=144,107;TYPE=SNP;DBXREF=dbSNP:rs857725,g1000:0.245607,esp5400:0.220501,ExAC:0.273,clinvar:rs857725|2,MutationTaster:0; 1 158609300 chr1:SNP:1228 C G 297 low_coverage;off_target DP=16;DP4=2,1,7,6;AD=3,13;TYPE=SNP;DBXREF=dbSNP:rs17635857,g1000:0.245407; 1 158612236 chr1:SNP:1229 A G 792 . DP=29;DP4=0,0,18,11;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs863931,g1000:0.59405,esp5400:0.605484,ExAC:0.579,clinvar:rs863931|2,MutationTaster:0.003; 1 158612548 chr1:SNP:1230 T A 120 low_coverage;off_target DP=16;DP4=9,1,5,1;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs857721,g1000:0.23722; 1 158614198 chr1:SNP:1231 C T 831 off_target DP=57;DP4=9,11,11,26;AD=20,37;TYPE=SNP;DBXREF=dbSNP:rs6702040,g1000:0.319688,esp5400:0.337849,ExAC:0.297,clinvar:rs6702040|2; 1 158618455 chr1:SNP:1232 G A 479 off_target DP=57;DP4=11,22,9,15;AD=33,24;TYPE=SNP;DBXREF=dbSNP:rs2246434,g1000:0.228235,esp5400:0.203816,ExAC:0.253,clinvar:rs2246434|2; 1 158619728 chr1:SNP:1233 A C 2805 . DP=106;DP4=0,0,51,55;AD=0,106;TYPE=SNP;DBXREF=dbSNP:rs2482965,g1000:0.994609,esp5400:0.994395,ExAC:0.998,clinvar:rs2482965|2,MutationTaster:0; 1 158619822 chr1:SNP:1234 A C 205 off_target DP=36;DP4=7,18,2,9;AD=25,11;TYPE=SNP;DBXREF=dbSNP:rs857689,g1000:0.417931; 1 158626378 chr1:SNP:1235 C T 478 . DP=44;DP4=10,12,11,11;AD=22,22;TYPE=SNP;DBXREF=dbSNP:rs857691,g1000:0.423522,esp5400:0.389467,ExAC:0.309,clinvar:rs857691|2; 1 158631171 chr1:SNP:1236 A C 638 . DP=56;DP4=11,15,13,17;AD=26,30;TYPE=SNP;DBXREF=dbSNP:rs2518493,g1000:0.24361,esp5400:0.225637,ExAC:0.262,clinvar:rs2518493|2; 1 158647495 chr1:SNP:1237 A T 642 . DP=73;DP4=22,19,16,16;AD=41,32;TYPE=SNP;DBXREF=dbSNP:rs325996,g1000:0.956869,esp5400:0.957707,ExAC:0.985,clinvar:rs325996|2; 1 158647522 chr1:SNP:1238 A G 592 . DP=72;DP4=21,22,12,17;AD=43,29;TYPE=SNP;DBXREF=dbSNP:rs703121,g1000:0.453874,esp5400:0.48289,ExAC:0.544,clinvar:rs703121|2; 1 158647631 chr1:SNP:1239 T A 117 low_coverage DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs325995,g1000:0.956869,esp5400:0.957877,ExAC:0.985,clinvar:rs325995|2; 1 158648210 chr1:SNP:1240 T C 347 . DP=29;DP4=7,6,11,5;AD=13,16;TYPE=SNP;DBXREF=dbSNP:rs183647059,g1000:0.000798722,esp5400:0.001964,ExAC:0.002847,MutationTaster:0; 1 158648324 chr1:SNP:1241 C T 543 . DP=52;DP4=12,12,13,13;AD=24,26;TYPE=SNP;DBXREF=dbSNP:rs199598260,g1000:0.000798722,esp5400:0.00177,ExAC:0.002864,MutationTaster:1; 1 158655036 chr1:SNP:1242 G A 1673 . DP=65;DP4=0,0,30,35;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs435080,g1000:0.969848,esp5400:0.972748,ExAC:0.992,clinvar:rs435080|2; 1 158655162 chr1:SNP:1243 C A 492 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2564859,g1000:0.969848,esp5400:0.973246,ExAC:0.992; 1 158656146 chr1:INDEL:85 TTAAAAG T 238 low_coverage;off_target DP=17;DP4=7,0,10,0;AD=7,10;TYPE=INDEL;DBXREF=dbSNP:rs66555443,g1000:0.254193; 1 158656281 chr1:SNP:1244 T C 1184 . DP=46;DP4=0,0,27,19;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs2564858,g1000:0.969848,esp5400:0.972718,ExAC:0.992,clinvar:rs2564858|2; 1 158656347 chr1:INDEL:86 C CAGAG 540 off_target DP=58;DP4=15,9,9,16;AD=24,25;TYPE=INDEL;DBXREF=dbSNP:rs111674514,ExAC:0.633; 1 159175193 chr1:SNP:1245 A G 242 off_target DP=22;DP4=8,2,11,1;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs3027016,g1000:0.0567093,esp5400:0.123995,ExAC:0.104; 1 159175354 chr1:SNP:1246 G A 3057 . DP=119;DP4=0,0,65,52;AD=0,117;TYPE=SNP;DBXREF=dbSNP:rs12075,g1000:0.540535,esp5400:0.697527,ExAC:0.523,clinvar:rs12075|2,MutationTaster:0; 1 159175527 chr1:SNP:1247 G A 2661 . DP=281;DP4=65,84,49,83;AD=149,132;TYPE=SNP;DBXREF=dbSNP:rs13962,g1000:0.0688898,esp5400:0.123536,ExAC:0.127,MutationTaster:0; 1 159272060 chr1:SNP:1248 T C 1723 off_target DP=65;DP4=0,0,41,24;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs2251746,g1000:0.149161; 1 159276153 chr1:SNP:1249 C T 478 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2252226,g1000:0.67512; 1 159684186 chr1:SNP:1250 T A 347 off_target DP=33;DP4=11,6,10,6;AD=17,16;TYPE=SNP;DBXREF=dbSNP:rs1417938,g1000:0.192093,esp5400:0.246793,ExAC:0.272; 1 160011280 chr1:SNP:1251 C T 1736 . DP=171;DP4=63,21,70,17;AD=84,87;TYPE=SNP;DBXREF=dbSNP:rs146396982,g1000:0.000199681,esp5400:0.000465,ExAC:0.0003624,clinvar:rs146396982|0,MutationTaster:0; 1 160012406 chr1:SNP:1252 A G 448 off_target DP=35;DP4=0,14,3,18;AD=14,21;TYPE=SNP;DBXREF=dbSNP:rs12729701,g1000:0.204872; 1 160090674 chr1:SNP:1253 T C 464 low_coverage;off_target DP=18;DP4=0,0,15,3;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2854246,g1000:1,esp5400:0.999622,ExAC:0.995; 1 160093222 chr1:SNP:1254 C T 10000 off_target DP=157;DP4=0,0,55,102;AD=0,157;TYPE=SNP;DBXREF=dbSNP:rs2820581,g1000:0.942492,esp5400:0.948875,ExAC:0.985,clinvar:rs2820581|2; 1 160093911 chr1:SNP:1255 T C 849 off_target DP=32;DP4=0,0,12,20;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs2820582,g1000:0.954673; 1 160093942 chr1:SNP:1256 G A 584 off_target DP=22;DP4=0,0,12,10;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs17846707,g1000:0.172724; 1 160095127 chr1:SNP:1257 T A 174 low_coverage;off_target DP=15;DP4=1,6,1,7;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs7548116,g1000:0.577676; 1 160097666 chr1:SNP:1258 G A 266 low_coverage;off_target DP=10;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6695366,g1000:0.815296; 1 160098543 chr1:SNP:1259 G A 346 . DP=44;DP4=13,14,8,9;AD=27,17;TYPE=SNP;DBXREF=dbSNP:rs1063125,g1000:0.209665,esp5400:0.193437,clinvar:rs1063125|255,MutationTaster:1; 1 160098927 chr1:INDEL:87 AG AGG 881 off_target DP=44;DP4=1,4,34,4;AD=5,38;TYPE=INDEL;DBXREF=dbSNP:rs5778151,g1000:0.767173,ExAC:0.826; 1 160106531 chr1:SNP:1260 G A 464 off_target DP=35;DP4=8,6,12,9;AD=14,21;TYPE=SNP;DBXREF=dbSNP:rs12083034,g1000:0.0828674,esp5400:0.108384,ExAC:0.071; 1 160106857 chr1:SNP:1261 G A 583 off_target DP=48;DP4=2,19,1,26;AD=21,27;TYPE=SNP;DBXREF=dbSNP:rs111331208,g1000:0.00399361,esp5400:0.014315,ExAC:0.014; 1 160246924 chr1:SNP:1262 G A 983 . DP=83;DP4=19,18,24,22;AD=37,46;TYPE=SNP;DBXREF=dbSNP:rs193290301,g1000:0.0169728,ExAC:0.029; 1 160251792 chr1:SNP:1263 A G 316 off_target DP=25;DP4=7,4,6,8;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs2795067,g1000:0.670327,esp5400:0.661182,ExAC:0.59; 1 160313330 chr1:SNP:1264 C G 206 off_target DP=30;DP4=8,11,4,7;AD=19,11;TYPE=SNP;DBXREF=dbSNP:rs3737794,g1000:0.166134,esp5400:0.117353; 1 160318940 chr1:SNP:1265 A G 504 low_coverage;off_target DP=19;DP4=0,0,3,16;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs6669689,g1000:0.558906,esp5400:0.527421,ExAC:0.526; 1 160320938 chr1:SNP:1266 C T 371 off_target DP=34;DP4=12,5,14,3;AD=17,17;TYPE=SNP;DBXREF=dbSNP:rs12240253,g1000:0.0427316; 1 160321065 chr1:SNP:1267 A G 1063 . DP=100;DP4=24,25,22,29;AD=49,51;TYPE=SNP;DBXREF=dbSNP:rs12239747,g1000:0.102835,esp5400:0.115263,ExAC:0.064; 1 160321499 chr1:SNP:1268 C T 269 . DP=54;DP4=21,18,10,5;AD=39,15;TYPE=SNP;DBXREF=dbSNP:rs6664627,g1000:0.0467252,esp5400:0.05633,ExAC:0.047,MutationTaster:1; 1 160323903 chr1:SNP:1269 C G 323 . DP=28;DP4=7,6,9,6;AD=13,15;TYPE=SNP;DBXREF=dbSNP:rs7528638,g1000:0.0421326,esp5400:0.061164,ExAC:0.044; 1 160325921 chr1:SNP:1270 T C 349 off_target DP=24;DP4=8,1,8,7;AD=9,15;TYPE=SNP;DBXREF=dbSNP:rs45503695,g1000:0.148163; 1 160327820 chr1:SNP:1271 G C 171 low_coverage;off_target DP=10;DP4=3,0,7,0;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs17370539,g1000:0.108027; 1 160803802 chr1:SNP:1272 A G 289 off_target DP=35;DP4=15,6,10,4;AD=21,14;TYPE=SNP;DBXREF=dbSNP:rs11265493,g1000:0.503195,esp5400:0.528909,ExAC:0.585; 1 160806019 chr1:SNP:1273 C G 656 . DP=67;DP4=21,15,16,15;AD=36,31;TYPE=SNP;DBXREF=dbSNP:rs35224927,g1000:0.0107827,esp5400:0.018963,ExAC:0.019,MutationTaster:0; 1 160809003 chr1:SNP:1274 G A 234 low_coverage;off_target DP=16;DP4=0,6,0,10;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs6682654,g1000:0.403754; 1 161010762 chr1:SNP:1275 C T 132 low_coverage;off_target DP=13;DP4=0,7,0,6;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs2073658,g1000:0.171126,clinvar:rs2073658|255; 1 161010774 chr1:SNP:1276 A G 253 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2516841,g1000:0.78135; 1 161010791 chr1:SNP:1277 C T 266 low_coverage;off_target DP=10;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2073657,g1000:0.363818; 1 161011317 chr1:SNP:1278 A G 300 low_coverage;off_target DP=12;DP4=0,0,5,7;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2516840,g1000:0.775958; 1 161011716 chr1:SNP:1279 G C 309 low_coverage;off_target DP=12;DP4=0,0,4,8;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2774276,g1000:0.78155; 1 161012590 chr1:SNP:1280 G A 304 off_target DP=40;DP4=15,10,6,9;AD=25,15;TYPE=SNP;DBXREF=dbSNP:rs2073655,g1000:0.177117,esp5400:0.203384,ExAC:0.244; 1 161013121 chr1:SNP:1281 C T 478 low_coverage;off_target DP=18;DP4=0,0,6,12;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2516839,g1000:0.396765,esp5400:0.53556; 1 161043735 chr1:SNP:1282 A C 337 low_coverage;off_target DP=12;DP4=0,0,1,11;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs4656285,g1000:0.734225; 1 161043764 chr1:SNP:1283 G A 266 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs4656978,g1000:0.72524; 1 161049509 chr1:SNP:1284 G T 673 . DP=71;DP4=30,8,25,8;AD=38,33;TYPE=SNP;DBXREF=dbSNP:rs35434391,g1000:0.0385383,esp5400:0.073073,ExAC:0.076,MutationTaster:1; 1 161136843 chr1:SNP:1285 C G 365 off_target DP=25;DP4=7,1,9,8;AD=8,17;TYPE=SNP;DBXREF=dbSNP:rs2301287,g1000:0.353435,esp5400:0.343186,ExAC:0.371; 1 161176137 chr1:SNP:1286 A G 219 low_coverage;off_target DP=18;DP4=4,4,9,1;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs4656993,g1000:0.704473; 1 161182208 chr1:SNP:1287 C G 397 . DP=49;DP4=21,8,12,8;AD=29,20;TYPE=SNP;DBXREF=dbSNP:rs11576415,g1000:0.0493211,esp5400:0.066927,ExAC:0.078,clinvar:rs11576415|3,MutationTaster:1; 1 161192316 chr1:SNP:1288 G A 796 . DP=73;DP4=13,21,15,24;AD=34,39;TYPE=SNP;DBXREF=dbSNP:rs6413453,g1000:0.103035,esp5400:0.081335,ExAC:0.114; 1 161192511 chr1:SNP:1289 C G 145 low_coverage;off_target DP=8;DP4=2,0,6,0;AD=2,6;TYPE=SNP;DBXREF=dbSNP:rs5085,g1000:0.180511; 1 161200487 chr1:SNP:1290 C A 335 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4073054,g1000:0.765375; 1 161200586 chr1:SNP:1291 T G 645 off_target DP=63;DP4=24,7,22,10;AD=31,32;TYPE=SNP;DBXREF=dbSNP:rs2307418,g1000:0.0826677,esp5400:0.113404,ExAC:0.132,clinvar:rs2307418|2; 1 161201350 chr1:SNP:1292 G T 344 low_coverage;off_target DP=14;DP4=0,1,0,13;AD=1,13;TYPE=SNP;DBXREF=dbSNP:rs11265567,g1000:0.33746; 1 161201352 chr1:SNP:1293 G A 398 low_coverage;off_target DP=16;DP4=0,1,0,15;AD=1,15;TYPE=SNP;DBXREF=dbSNP:rs11265568,g1000:0.33746; 1 161202605 chr1:SNP:1294 G A 1065 . DP=39;DP4=0,0,18,21;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs2307424,g1000:0.336262,esp5400:0.270868,ExAC:0.353,clinvar:rs2307424|2; 1 161205898 chr1:SNP:1295 G T 231 low_coverage;off_target DP=15;DP4=0,5,0,10;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs6686001,g1000:0.133387; 1 161276434 chr1:SNP:1296 A G 438 low_coverage;off_target DP=17;DP4=0,0,13,4;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6674383,g1000:1; 1 161284224 chr1:INDEL:88 A AGT 393 . DP=41;DP4=12,9,9,9;AD=21,18;TYPE=INDEL;DBXREF=dbSNP:rs75726722,g1000:0.169728,ExAC:0.105,clinvar:rs57118366|2; 1 161293492 chr1:SNP:1297 A T 103 low_coverage;off_target DP=17;DP4=3,6,2,3;AD=9,5;TYPE=SNP;DBXREF=dbSNP:rs77828459,g1000:0.122005,esp5400:0.012384,ExAC:0.073; 1 161293508 chr1:SNP:1298 C T 114 off_target DP=20;DP4=3,11,1,5;AD=14,6;TYPE=SNP;DBXREF=dbSNP:rs112946310,g1000:0.128395,esp5400:0.054384,ExAC:0.075; 1 161326274 chr1:SNP:1299 A G 133 low_coverage;off_target DP=11;DP4=5,0,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs80246038,g1000:0.169129; 1 161326293 chr1:SNP:1300 T C 412 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs12757174,g1000:0.392173; 1 161326313 chr1:SNP:1301 A G 275 off_target DP=30;DP4=17,0,13,0;AD=17,13;TYPE=SNP;DBXREF=dbSNP:rs112737166,g1000:0.127396; 1 161326331 chr1:SNP:1302 G T 367 off_target DP=31;DP4=14,0,16,1;AD=14,17;TYPE=SNP;DBXREF=dbSNP:rs113368293,g1000:0.104832; 1 161332346 chr1:SNP:1303 C G 151 low_coverage;off_target DP=16;DP4=0,9,0,7;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs3813632,g1000:0.128794,esp5400:0.06513,ExAC:0.094; 1 161479745 chr1:SNP:1304 A G 379 . DP=62;DP4=16,25,9,12;AD=41,21;TYPE=SNP;DBXREF=dbSNP:rs1801274,g1000:0.441693,esp5400:0.528165,ExAC:0.479,clinvar:rs1801274|255|255|255|6,MutationTaster:0.48; 1 161487805 chr1:SNP:1305 T C 323 low_variant_fraction DP=130;DP4=66,41,9,14;AD=107,23;TYPE=SNP;DBXREF=dbSNP:rs382627,MutationTaster:0.16; 1 161487863 chr1:SNP:1306 C T 784 . DP=110;DP4=27,42,19,22;AD=69,41;TYPE=SNP;DBXREF=dbSNP:rs12029217,g1000:0.121206,esp5400:0.088728,ExAC:0.115; 1 161487914 chr1:SNP:1307 C T 135 low_variant_fraction DP=98;DP4=30,58,3,7;AD=88,10;TYPE=SNP;DBXREF=dbSNP:rs12124551,esp5400:9.3e-05; 1 161488017 chr1:SNP:1308 T C 219 low_coverage;off_target DP=16;DP4=2,4,2,8;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs10919033,g1000:0.1252; 1 161514542 chr1:SNP:1309 A C 532 . DP=47;DP4=12,10,17,8;AD=22,25;TYPE=SNP;DBXREF=dbSNP:rs396991,esp5400:0.284904,ExAC:0.331,clinvar:rs396991|6|6|6,MutationTaster:0; 1 161518172 chr1:SNP:1310 C T 322 off_target DP=33;DP4=8,9,11,5;AD=17,16;TYPE=SNP;DBXREF=dbSNP:rs4656315,esp5400:0.158411; 1 161518908 chr1:SNP:1311 C T 496 off_target DP=44;DP4=8,12,8,16;AD=20,24;TYPE=SNP;DBXREF=dbSNP:rs12071048,g1000:0.105831,esp5400:0.089109; 1 161519411 chr1:SNP:1312 C A 511 off_target DP=45;DP4=14,7,19,5;AD=21,24;TYPE=SNP;DBXREF=dbSNP:rs10917571,g1000:0.340455; 1 161594100 chr1:SNP:1313 C T 309 low_coverage;off_target DP=12;DP4=0,0,11,1;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs61803007,g1000:0.514577; 1 161594226 chr1:SNP:1314 C T 1582 off_target DP=58;DP4=0,0,43,15;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs61803008,g1000:0.895966; 1 161594246 chr1:SNP:1315 G T 2330 off_target DP=88;DP4=0,0,59,29;AD=0,88;TYPE=SNP;DBXREF=dbSNP:rs61803009,g1000:0.895966; 1 161594525 chr1:SNP:1316 G C 519 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs61803010,g1000:0.895767; 1 161594526 chr1:SNP:1317 T G 601 off_target DP=22;DP4=0,0,0,22;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs61803011,g1000:0.895367; 1 161594561 chr1:SNP:1318 C G 281 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs61803012,g1000:0.868411; 1 161599693 chr1:SNP:1319 T C 388 . DP=20;DP4=0,0,10,6;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs448740,g1000:0.532947,esp5400:0.568804,clinvar:rs448740|5,MutationTaster:0; 1 161600109 chr1:SNP:1320 C T 1432 off_target DP=54;DP4=0,0,36,18;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs149686267,g1000:0.0780751,esp5400:0.100671,ExAC:0.108; 1 161600287 chr1:INDEL:89 ATTTT ATTT 256 off_target DP=31;DP4=3,1,2,25;AD=4,27;TYPE=INDEL;DBXREF=g1000:0.398363; 1 161600345 chr1:SNP:1321 C T 567 off_target DP=22;DP4=0,0,0,22;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs145831350,g1000:0.464657; 1 161600787 chr1:SNP:1322 G C 1167 off_target DP=44;DP4=0,0,29,15;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs3883928,g1000:0.968051,esp5400:0.95854; 1 161600832 chr1:SNP:1323 G T 1570 off_target DP=61;DP4=0,0,32,29;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs3883934,g1000:0.5002,esp5400:0.607289,ExAC:0.586; 1 161643044 chr1:SNP:1324 A G 425 low_coverage;off_target DP=17;DP4=0,0,4,13;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2125685,g1000:0.402356,esp5400:0.098517,ExAC:0.194; 1 161643889 chr1:SNP:1325 G T 2013 off_target DP=76;DP4=0,0,29,47;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs6666965,g1000:0.666334,esp5400:0.331115,ExAC:0.314; 1 161736035 chr1:SNP:1326 A G 273 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2298019,g1000:0.91234; 1 161822959 chr1:SNP:1327 C T 601 off_target DP=22;DP4=0,0,18,4;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2340717,g1000:0.966054; 1 161823011 chr1:SNP:1328 T A 770 . DP=29;DP4=0,0,13,16;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs2257107,g1000:0.400958,esp5400:0.490143,ExAC:0.555; 1 161833233 chr1:SNP:1329 G A 519 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs3767632,g1000:0.232228; 1 161928327 chr1:SNP:1330 A G 2462 . DP=93;DP4=0,0,52,41;AD=0,93;TYPE=SNP;DBXREF=dbSNP:rs9482,g1000:0.558706,esp5400:0.646124,ExAC:0.654; 1 162313597 chr1:SNP:1331 T C 637 off_target DP=24;DP4=0,0,21,3;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs347278,g1000:0.925919,esp5400:0.918386,ExAC:0.966; 1 162335424 chr1:SNP:1332 T C 355 low_coverage;off_target DP=13;DP4=0,0,1,12;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1964052,g1000:0.719249; 1 162722846 chr1:SNP:1333 C G 743 off_target DP=28;DP4=0,0,17,11;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs1632311,g1000:0.970447,esp5400:0.972207,ExAC:0.992,clinvar:rs1632311|2; 1 162725655 chr1:SNP:1334 A C 301 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1115570,g1000:0.927915; 1 162737116 chr1:SNP:1335 C G 604 . DP=50;DP4=9,13,11,17;AD=22,28;TYPE=SNP;DBXREF=dbSNP:rs2298258,g1000:0.348442,esp5400:0.262038,ExAC:0.224,clinvar:rs2298258|2,MutationTaster:0.282; 1 162740327 chr1:SNP:1336 T C 849 off_target DP=32;DP4=0,0,4,28;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs1780003,g1000:0.945487,esp5400:0.94618,ExAC:0.985,clinvar:rs1780003|2,MutationTaster:0; 1 162742180 chr1:SNP:1337 T C 365 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1704762,g1000:0.945487; 1 162743418 chr1:SNP:1338 G T 437 low_coverage;off_target DP=16;DP4=0,0,1,15;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs1355287,g1000:0.992412,esp5400:0.995352,ExAC:0.999,clinvar:rs1355287|2; 1 162748588 chr1:SNP:1339 C A 345 low_coverage;off_target DP=13;DP4=0,0,3,10;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs907074,g1000:0.96885; 1 165375895 chr1:SNP:1340 A C 229 low_coverage;off_target DP=11;DP4=2,0,9,0;AD=2,9;TYPE=SNP;DBXREF=dbSNP:rs283697,g1000:0.872005; 1 165376043 chr1:SNP:1341 T C 719 . DP=64;DP4=22,9,20,13;AD=31,33;TYPE=SNP;DBXREF=dbSNP:rs283696,g1000:0.872005,esp5400:0.810188,ExAC:0.829; 1 165376228 chr1:SNP:1342 T C 306 off_target DP=39;DP4=9,14,1,14;AD=23,15;TYPE=SNP;DBXREF=dbSNP:rs3737003,g1000:0.564896; 1 165376229 chr1:SNP:1343 C G 381 off_target DP=35;DP4=2,15,2,16;AD=17,18;TYPE=SNP;DBXREF=dbSNP:rs10800095,g1000:0.779353; 1 165376233 chr1:SNP:1344 G C 378 off_target DP=36;DP4=2,16,2,16;AD=18,18;TYPE=SNP;DBXREF=dbSNP:rs10800096,g1000:0.869409; 1 165377389 chr1:SNP:1345 T C 328 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs283692,g1000:0.996206; 1 165377552 chr1:SNP:1346 G A 1511 . DP=57;DP4=0,0,24,33;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs2134095,g1000:0.478834,esp5400:0.558003,ExAC:0.61; 1 165386158 chr1:SNP:1347 T C 185 low_coverage;off_target DP=18;DP4=9,0,9,0;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs2281985,g1000:0.391973; 1 165386567 chr1:SNP:1348 C T 199 low_coverage;off_target DP=14;DP4=0,5,1,8;AD=5,9;TYPE=SNP;DBXREF=dbSNP:rs2281986,g1000:0.391573; 1 165389129 chr1:SNP:1349 G A 1248 . DP=98;DP4=27,15,34,22;AD=42,56;TYPE=SNP;DBXREF=dbSNP:rs1128977,g1000:0.227436,esp5400:0.29578,ExAC:0.339; 1 165624799 chr1:SNP:1350 G T 191 off_target DP=26;DP4=8,8,3,7;AD=16,10;TYPE=SNP;DBXREF=dbSNP:rs8133,g1000:0.253395; 1 165693539 chr1:SNP:1351 T C 350 . DP=28;DP4=12,0,16,0;AD=12,16;TYPE=SNP;DBXREF=dbSNP:rs3186873,g1000:0.276957,ExAC:0.184; 1 165693863 chr1:SNP:1352 G T 1019 . DP=97;DP4=19,29,21,28;AD=48,49;TYPE=SNP;DBXREF=dbSNP:rs14223,g1000:0.516973,ExAC:0.606; 1 165694897 chr1:SNP:1353 T C 10000 . DP=177;DP4=0,0,97,80;AD=0,177;TYPE=SNP;DBXREF=dbSNP:rs7524755,g1000:0.904752,ExAC:0.903; 1 165694918 chr1:SNP:1354 G C 1921 . DP=212;DP4=67,49,51,45;AD=116,96;TYPE=SNP;DBXREF=dbSNP:rs6426937,g1000:0.552516,ExAC:0.642; 1 165695726 chr1:SNP:1355 T C 1011 . DP=83;DP4=18,18,22,25;AD=36,47;TYPE=SNP;DBXREF=dbSNP:rs1913846,g1000:0.530751,ExAC:0.625; 1 165695855 chr1:SNP:1356 C T 1511 . DP=57;DP4=0,0,35,22;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs6660601,g1000:0.922125,ExAC:0.907; 1 165737704 chr1:SNP:1357 C G 1961 off_target DP=74;DP4=0,0,39,35;AD=0,74;TYPE=SNP;DBXREF=dbSNP:rs2790053,g1000:0.921526,ExAC:0.845; 1 167407686 chr1:SNP:1358 T C 200 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2462553,g1000:0.844649; 1 167408670 chr1:SNP:1359 C T 545 off_target DP=59;DP4=13,19,12,14;AD=32,26;TYPE=SNP;DBXREF=dbSNP:rs840016,g1000:0.190695,esp5400:0.296988,ExAC:0.31; 1 168262289 chr1:SNP:1360 A G 108 low_coverage;off_target DP=12;DP4=6,1,5,0;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs7543224,g1000:0.580671; 1 168274201 chr1:SNP:1361 G A 1010 off_target DP=37;DP4=0,0,23,14;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs4656579,g1000:0.48762,esp5400:0.630229,ExAC:0.603; 1 168282261 chr1:SNP:1362 T A 114 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs3885717,g1000:0.489417,esp5400:0.462061,ExAC:0.442; 1 169080435 chr1:SNP:1363 T C 451 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs1200137,g1000:0.759784; 1 169080837 chr1:SNP:1364 C T 747 off_target DP=29;DP4=0,0,9,20;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs1200138,g1000:0.746805; 1 169094100 chr1:SNP:1365 T A 381 off_target DP=45;DP4=15,11,10,9;AD=26,19;TYPE=SNP;DBXREF=dbSNP:rs968304,g1000:0.657947,esp5400:0.617888,ExAC:0.607; 1 169094459 chr1:SNP:1366 C T 218 low_coverage;off_target DP=13;DP4=0,4,0,9;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs1892094,g1000:0.291134; 1 169435027 chr1:SNP:1367 C T 492 low_coverage;off_target DP=18;DP4=0,0,13,5;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2678166,g1000:0.997604; 1 169494196 chr1:SNP:1368 C T 302 off_target DP=41;DP4=7,18,7,9;AD=25,16;TYPE=SNP;DBXREF=dbSNP:rs2301515,g1000:0.540735,esp5400:0.330907,ExAC:0.401; 1 169498834 chr1:SNP:1369 T C 1596 off_target DP=62;DP4=0,0,49,13;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs6009,g1000:0.936302,esp5400:0.914652,ExAC:0.932,clinvar:rs6009|2; 1 169498975 chr1:SNP:1370 T C 814 . DP=77;DP4=9,29,11,28;AD=38,39;TYPE=SNP;DBXREF=dbSNP:rs6030,g1000:0.308706,esp5400:0.290853,ExAC:0.335,clinvar:rs6030|2,MutationTaster:0; 1 169510233 chr1:SNP:1371 G A 463 . DP=77;DP4=27,25,14,11;AD=52,25;TYPE=SNP;DBXREF=dbSNP:rs9332607,g1000:0.182109,esp5400:0.326083,ExAC:0.296,clinvar:rs9332607|2; 1 169510246 chr1:SNP:1372 G A 268 . DP=47;DP4=17,15,7,8;AD=32,15;TYPE=SNP;DBXREF=dbSNP:rs200676405,MutationTaster:0.001; 1 169510367 chr1:SNP:1373 T G 118 low_variant_fraction DP=82;DP4=38,35,6,3;AD=73,9;TYPE=SNP;DBXREF=dbSNP:rs112331368,MutationTaster:0; 1 169510380 chr1:SNP:1374 G A 573 . DP=95;DP4=32,31,19,12;AD=63,31;TYPE=SNP;DBXREF=dbSNP:rs9287090,g1000:0.263578,esp5400:0.244376,ExAC:0.272,clinvar:rs9287090|2; 1 169510524 chr1:SNP:1375 A G 506 . DP=51;DP4=16,9,14,12;AD=25,26;TYPE=SNP;DBXREF=dbSNP:rs1800594,g1000:0.309505,esp5400:0.283098,ExAC:0.312,clinvar:rs1800594|2; 1 169510637 chr1:SNP:1376 T G 235 low_variant_fraction DP=92;DP4=38,36,13,5;AD=74,18;TYPE=SNP;DBXREF=MutationTaster:0; 1 169511555 chr1:SNP:1377 T C 925 . DP=93;DP4=23,25,27,18;AD=48,45;TYPE=SNP;DBXREF=dbSNP:rs6032,g1000:0.26278,esp5400:0.243633,ExAC:0.274,clinvar:rs6032|2,MutationTaster:0; 1 169511734 chr1:SNP:1378 T C 749 . DP=56;DP4=10,12,12,22;AD=22,34;TYPE=SNP;DBXREF=dbSNP:rs4525,g1000:0.26278,esp5400:0.244097,ExAC:0.274,clinvar:rs4525|2,MutationTaster:0; 1 169511755 chr1:SNP:1379 T C 519 . DP=47;DP4=9,12,13,13;AD=21,26;TYPE=SNP;DBXREF=dbSNP:rs4524,g1000:0.266773,esp5400:0.243912,ExAC:0.277,clinvar:rs4524|2,MutationTaster:0; 1 169512027 chr1:SNP:1380 T C 1140 . DP=93;DP4=21,19,25,28;AD=40,53;TYPE=SNP;DBXREF=dbSNP:rs6021,g1000:0.26278,esp5400:0.243912,ExAC:0.274,clinvar:rs6021|2; 1 169512093 chr1:SNP:1381 A G 1165 . DP=110;DP4=34,20,25,31;AD=54,56;TYPE=SNP;DBXREF=dbSNP:rs6017,g1000:0.26278,esp5400:0.243912,ExAC:0.274,clinvar:rs6017|2; 1 169512120 chr1:SNP:1382 G A 1063 . DP=109;DP4=29,27,24,28;AD=56,52;TYPE=SNP;DBXREF=dbSNP:rs6016,g1000:0.26278,esp5400:0.243912,ExAC:0.274,clinvar:rs6016|2; 1 169515874 chr1:SNP:1383 T A 125 low_coverage;off_target DP=16;DP4=2,8,0,6;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs13306345,g1000:0.257388,esp5400:0.224661,ExAC:0.257; 1 169519049 chr1:SNP:1384 T C 670 . DP=26;DP4=0,0,22,4;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs6025,g1000:0.99401,esp5400:0.978063,ExAC:0.978,clinvar:rs6025|6,MutationTaster:1; 1 169519417 chr1:SNP:1385 G A 434 off_target DP=32;DP4=0,13,0,19;AD=13,19;TYPE=SNP;DBXREF=dbSNP:rs7537742,g1000:0.436302; 1 169551682 chr1:SNP:1386 T C 476 . DP=32;DP4=8,3,14,7;AD=11,21;TYPE=SNP;DBXREF=dbSNP:rs6028,g1000:0.226438,esp5400:0.201225,ExAC:0.286,clinvar:rs6028|2; 1 169564167 chr1:SNP:1387 G C 525 off_target DP=41;DP4=5,12,4,20;AD=17,24;TYPE=SNP;DBXREF=dbSNP:rs742127,g1000:0.252596,esp5400:0.234122,ExAC:0.302; 1 169566313 chr1:SNP:1388 C T 1781 . DP=139;DP4=29,28,45,35;AD=57,80;TYPE=SNP;DBXREF=dbSNP:rs6127,g1000:0.750799,esp5400:0.648355,ExAC:0.639,MutationTaster:0; 1 169580885 chr1:SNP:1389 C T 929 . DP=101;DP4=24,31,14,32;AD=55,46;TYPE=SNP;DBXREF=dbSNP:rs6131,g1000:0.239018,esp5400:0.228853,ExAC:0.206,MutationTaster:0; 1 169580972 chr1:INDEL:90 C CAT 175 off_target DP=35;DP4=3,23,0,9;AD=26,9;TYPE=INDEL;DBXREF=dbSNP:rs3917730,g1000:0.408147; 1 169582317 chr1:SNP:1390 C T 646 . DP=71;DP4=13,27,6,25;AD=40,31;TYPE=SNP;DBXREF=dbSNP:rs6125,g1000:0.0565096,esp5400:0.049266,ExAC:0.059,MutationTaster:0; 1 169582401 chr1:SNP:1391 C G 205 off_target DP=23;DP4=3,10,3,7;AD=13,10;TYPE=SNP;DBXREF=dbSNP:rs3917721,g1000:0.0567093,esp5400:0.048261,ExAC:0.054; 1 169588354 chr1:SNP:1392 G A 590 off_target DP=44;DP4=12,6,16,10;AD=18,26;TYPE=SNP;DBXREF=dbSNP:rs3917696,g1000:0.0595048,esp5400:0.053449,ExAC:0.06; 1 169672343 chr1:SNP:1393 C T 435 off_target DP=36;DP4=16,1,16,3;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs4987314,g1000:0.1877; 1 169673838 chr1:SNP:1394 G A 2643 . DP=191;DP4=29,45,44,73;AD=74,117;TYPE=SNP;DBXREF=dbSNP:rs2229569,g1000:0.24401,esp5400:0.156902,ExAC:0.125,MutationTaster:1; 1 169677709 chr1:SNP:1395 A G 786 . DP=61;DP4=15,9,21,15;AD=24,36;TYPE=SNP;DBXREF=dbSNP:rs1051091,g1000:0.30012,esp5400:0.247285,ExAC:0.284; 1 169678024 chr1:SNP:1396 T C 257 off_target DP=23;DP4=1,10,1,11;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs4987285,g1000:0.358427; 1 169679472 chr1:INDEL:91 G GCT 198 off_target DP=21;DP4=10,0,9,0;AD=10,9;TYPE=INDEL;DBXREF=dbSNP:rs4987281,g1000:0.30012; 1 169694918 chr1:SNP:1397 A G 1049 . DP=78;DP4=16,13,24,25;AD=29,49;TYPE=SNP;DBXREF=dbSNP:rs5356,g1000:0.148363,esp5400:0.086819,ExAC:0.139; 1 169695110 chr1:SNP:1398 T A 1049 off_target DP=114;DP4=24,38,18,34;AD=62,52;TYPE=SNP;DBXREF=dbSNP:rs3917432,g1000:0.123802,esp5400:0.060141,ExAC:0.124; 1 169695984 chr1:SNP:1399 G A 384 off_target DP=30;DP4=3,10,3,14;AD=13,17;TYPE=SNP;DBXREF=dbSNP:rs3917428,g1000:0.123602,esp5400:0.060338,ExAC:0.118; 1 169696946 chr1:SNP:1400 G A 2001 . DP=168;DP4=34,40,43,51;AD=74,94;TYPE=SNP;DBXREF=dbSNP:rs5368,g1000:0.150958,esp5400:0.086726,ExAC:0.139,clinvar:rs5368|0,MutationTaster:0; 1 169697444 chr1:SNP:1401 C T 175 low_coverage;off_target DP=19;DP4=0,10,1,8;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs1076637,g1000:0.329073; 1 169698825 chr1:SNP:1402 T G 840 off_target DP=77;DP4=10,27,9,31;AD=37,40;TYPE=SNP;DBXREF=dbSNP:rs1534904,g1000:0.801917,esp5400:0.772355,ExAC:0.742; 1 169702705 chr1:SNP:1403 G A 692 off_target DP=64;DP4=19,13,23,9;AD=32,32;TYPE=SNP;DBXREF=dbSNP:rs932307,g1000:0.383786,esp5400:0.281186,ExAC:0.323; 1 169890933 chr1:SNP:1404 A G 1088 off_target DP=41;DP4=0,0,14,27;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs518928,g1000:0.95647,esp5400:0.929541,ExAC:0.926; 1 169930049 chr1:SNP:1405 C T 372 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs542570,g1000:0.95647; 1 169930051 chr1:SNP:1406 T C 335 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs615485,g1000:0.95647; 1 169941761 chr1:SNP:1407 A T 1664 off_target DP=61;DP4=0,0,34,27;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs511443,g1000:0.957668,esp5400:0.931354,ExAC:0.923; 1 169951408 chr1:SNP:1408 A T 197 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs2273457,g1000:0.575879; 1 169951748 chr1:SNP:1409 A G 504 low_coverage;off_target DP=19;DP4=0,0,18,1;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs638486,g1000:0.957867; 1 169951997 chr1:SNP:1410 C T 745 . DP=57;DP4=6,17,13,21;AD=23,34;TYPE=SNP;DBXREF=dbSNP:rs33943686,g1000:0.273962,esp5400:0.244746,ExAC:0.295; 1 169952385 chr1:SNP:1411 G T 850 off_target DP=33;DP4=0,0,23,10;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2057249,g1000:0.958267,esp5400:0.930537,ExAC:0.924; 1 169985796 chr1:SNP:1412 A G 552 off_target DP=60;DP4=12,20,9,19;AD=32,28;TYPE=SNP;DBXREF=dbSNP:rs16862933,g1000:0.232428,esp5400:0.20556,ExAC:0.262; 1 170004722 chr1:SNP:1413 G A 307 off_target DP=28;DP4=2,12,4,10;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs4656732,g1000:0.125599,esp5400:0.089236,ExAC:0.131; 1 170008281 chr1:INDEL:92 CAT C 104 low_coverage;off_target DP=16;DP4=6,5,4,1;AD=11,5;TYPE=INDEL;DBXREF=dbSNP:rs74942897,g1000:0.138379; 1 170501385 chr1:SNP:1414 A C 717 . DP=27;DP4=0,0,6,21;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs7531125,g1000:0.927516,esp5400:0.934003,ExAC:0.98; 1 170521376 chr1:SNP:1415 G A 2859 . DP=105;DP4=0,0,48,57;AD=0,105;TYPE=SNP;DBXREF=dbSNP:rs913257,g1000:0.592652,esp5400:0.485499,ExAC:0.539,clinvar:rs913257|2,MutationTaster:1; 1 170522667 chr1:SNP:1416 T A 1526 . DP=67;DP4=0,0,16,46;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs6427262,g1000:0.326478; 1 170633173 chr1:SNP:1417 A G 200 low_coverage;off_target DP=8;DP4=0,0,7,1;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs563216,g1000:1; 1 171130236 chr1:SNP:1418 G A 211 off_target DP=21;DP4=6,4,8,3;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs61814301,g1000:0.0652955,ExAC:0.053,MutationTaster:0; 1 171130346 chr1:SNP:1419 G A 1225 . DP=82;DP4=19,10,28,25;AD=29,53;TYPE=SNP;DBXREF=dbSNP:rs16864125,g1000:0.139177,ExAC:0.056; 1 171130539 chr1:SNP:1420 G C 140 low_coverage DP=16;DP4=0,9,3,4;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs72714112,g1000:0.140974,ExAC:0.1; 1 171130598 chr1:INDEL:93 CACACA C 353 . DP=26;DP4=4,7,8,7;AD=11,15;TYPE=INDEL;DBXREF=dbSNP:rs145126383,g1000:0.420927; 1 171168584 chr1:SNP:1421 C T 940 . DP=97;DP4=23,28,19,27;AD=51,46;TYPE=SNP;DBXREF=dbSNP:rs2020862,g1000:0.472843,esp5400:0.384458,ExAC:0.396,MutationTaster:1; 1 171168585 chr1:SNP:1422 A G 1059 . DP=97;DP4=21,24,24,28;AD=45,52;TYPE=SNP;DBXREF=dbSNP:rs2020861,g1000:0.589257,esp5400:0.507436,ExAC:0.502; 1 171174531 chr1:SNP:1423 A G 1441 . DP=178;DP4=53,48,46,30;AD=101,76;TYPE=SNP;DBXREF=dbSNP:rs2020863,g1000:0.159744,esp5400:0.081521,ExAC:0.133,MutationTaster:0.999; 1 171300959 chr1:SNP:1424 T C 107 low_coverage;off_target DP=18;DP4=3,9,1,5;AD=12,6;TYPE=SNP;DBXREF=dbSNP:rs2294482,g1000:0.284545,esp5400:0.203941,ExAC:0.266; 1 171302094 chr1:SNP:1425 A C 310 off_target DP=27;DP4=3,10,0,14;AD=13,14;TYPE=SNP;DBXREF=dbSNP:rs4140632,g1000:0.58766,esp5400:0.565357,ExAC:0.488; 1 171303925 chr1:SNP:1426 C T 634 off_target DP=44;DP4=8,7,14,15;AD=15,29;TYPE=SNP;DBXREF=dbSNP:rs3820170,g1000:0.541733,esp5400:0.500186,ExAC:0.468; 1 171607702 chr1:SNP:1427 C T 1936 off_target DP=71;DP4=0,0,56,15;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs2032555,g1000:0.784545,esp5400:0.761294,ExAC:0.729; 1 172633350 chr1:SNP:1428 A G 360 off_target DP=43;DP4=25,0,17,1;AD=25,18;TYPE=SNP;DBXREF=dbSNP:rs5030772,g1000:0.0555112; 1 172634734 chr1:SNP:1429 T C 1617 off_target DP=61;DP4=0,0,42,19;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs2639653,g1000:0.995807,esp5400:0.986243,ExAC:0.991; 1 173157764 chr1:SNP:1430 G A 261 off_target DP=25;DP4=4,9,2,10;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs10489270,g1000:0.0587061,esp5400:0.097712; 1 173814258 chr1:SNP:1431 T C 424 off_target DP=42;DP4=20,1,18,3;AD=21,21;TYPE=SNP;DBXREF=dbSNP:rs77124001,g1000:0.114217; 1 173876705 chr1:SNP:1432 C T 317 off_target DP=34;DP4=7,12,6,9;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs2759328,g1000:0.126997,esp5400:0.09462; 1 173878832 chr1:SNP:1433 T C 330 . DP=26;DP4=7,4,8,7;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs5878,g1000:0.535743,esp5400:0.491541,ExAC:0.403,clinvar:rs5878|2; 1 173878862 chr1:SNP:1434 T C 405 . DP=36;DP4=9,8,10,9;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs5877,g1000:0.545327,esp5400:0.486429,ExAC:0.408,clinvar:rs5877|2; 1 173886216 chr1:SNP:1435 C T 161 low_coverage;off_target DP=11;DP4=4,0,6,1;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs2227589,g1000:0.128594; 1 175293424 chr1:SNP:1436 T C 145 low_coverage;off_target DP=16;DP4=7,2,6,1;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs2213635,g1000:0.766174; 1 175299301 chr1:SNP:1437 T C 2166 . DP=208;DP4=46,57,50,55;AD=103,105;TYPE=SNP;DBXREF=dbSNP:rs2027867,g1000:0.765974,esp5400:0.751813,ExAC:0.745; 1 175306536 chr1:SNP:1438 A G 292 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2269587,g1000:0.453275; 1 175324518 chr1:INDEL:94 GCA G 271 low_coverage;off_target DP=11;DP4=1,0,10,0;AD=1,10;TYPE=INDEL;DBXREF=dbSNP:rs55715761,g1000:0.678315; 1 175324521 chr1:SNP:1439 A T 209 low_coverage;off_target DP=9;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs55973835,g1000:0.678315; 1 175324651 chr1:SNP:1440 A G 1287 . DP=50;DP4=0,0,28,22;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs2228359,g1000:0.665735,esp5400:0.63813,ExAC:0.689; 1 175336530 chr1:SNP:1441 T C 284 low_coverage;off_target DP=11;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6697701,g1000:0.685703; 1 175348723 chr1:SNP:1442 C T 515 . DP=44;DP4=10,10,12,12;AD=20,24;TYPE=SNP;DBXREF=dbSNP:rs859427,g1000:0.696286,esp5400:0.660625,ExAC:0.673,MutationTaster:0.016; 1 175355128 chr1:SNP:1443 C G 419 off_target DP=46;DP4=16,10,14,6;AD=26,20;TYPE=SNP;DBXREF=dbSNP:rs859436,g1000:0.652157,esp5400:0.606525,ExAC:0.622; 1 175355391 chr1:SNP:1444 A G 876 . DP=33;DP4=0,0,10,23;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs859437,g1000:0.832867,esp5400:0.796709,ExAC:0.812; 1 175365663 chr1:SNP:1445 G A 1696 off_target DP=64;DP4=0,0,40,24;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs859446,g1000:0.504193,esp5400:0.467001,ExAC:0.466; 1 175375469 chr1:SNP:1446 C A 281 . DP=24;DP4=5,6,5,8;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs2239819,g1000:0.287141,esp5400:0.220022,ExAC:0.293,MutationTaster:0; 1 175375635 chr1:SNP:1447 G A 202 low_coverage DP=17;DP4=3,5,5,4;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs2239818,g1000:0.0493211,esp5400:0.058282,ExAC:0.064; 1 175375683 chr1:SNP:1448 T C 365 low_coverage DP=13;DP4=0,0,5,8;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs859399,g1000:0.726837,esp5400:0.680703,ExAC:0.676; 1 175916267 chr1:SNP:1449 T C 1008 off_target DP=38;DP4=0,0,32,6;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs6674353,g1000:0.920128,esp5400:0.944651; 1 176012807 chr1:SNP:1450 G A 618 off_target DP=24;DP4=0,0,14,10;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs4233165,g1000:0.937899,esp5400:0.930086,ExAC:0.971; 1 176145277 chr1:SNP:1451 T C 365 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs471534,g1000:0.715655; 1 176153658 chr1:SNP:1452 T C 515 off_target DP=20;DP4=0,0,17,3;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs791744,g1000:0.714856; 1 179520254 chr1:SNP:1453 C G 187 off_target DP=23;DP4=13,1,9,0;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs1410591,g1000:0.587859; 1 179520506 chr1:SNP:1454 G A 373 . DP=38;DP4=8,11,5,13;AD=19,18;TYPE=SNP;DBXREF=dbSNP:rs1410592,g1000:0.58766,esp5400:0.617494,ExAC:0.619,clinvar:rs1410592|2; 1 179544898 chr1:SNP:1455 T C 1167 . DP=44;DP4=0,0,17,27;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs1079292,g1000:0.930911,esp5400:0.96529,ExAC:0.958,clinvar:rs1079292|2; 1 180240510 chr1:SNP:1456 T C 555 . DP=57;DP4=15,14,14,13;AD=29,27;TYPE=SNP;DBXREF=dbSNP:rs2764449,g1000:0.0413339,esp5400:0.058654,ExAC:0.066; 1 181680082 chr1:SNP:1457 G A 935 . DP=81;DP4=22,15,32,12;AD=37,44;TYPE=SNP;DBXREF=dbSNP:rs17743547,g1000:0.0932508,esp5400:0.119574,ExAC:0.127; 1 181684605 chr1:SNP:1458 A G 188 low_coverage;off_target DP=8;DP4=0,0,2,6;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs12407563,g1000:0.836262; 1 181686216 chr1:SNP:1459 T C 1617 off_target DP=61;DP4=0,0,43,18;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs7540850,g1000:0.555112,esp5400:0.591677,ExAC:0.673; 1 181701423 chr1:SNP:1460 C T 142 low_coverage;off_target DP=15;DP4=7,1,6,1;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs2280865,g1000:0.385583; 1 181719679 chr1:SNP:1461 C T 581 off_target DP=37;DP4=4,7,10,16;AD=11,26;TYPE=SNP;DBXREF=dbSNP:rs704332,g1000:0.548522,esp5400:0.561224; 1 181725110 chr1:SNP:1462 T C 699 . DP=70;DP4=18,16,25,11;AD=34,36;TYPE=SNP;DBXREF=dbSNP:rs4652678,g1000:0.318291,esp5400:0.320008,ExAC:0.284; 1 181726413 chr1:SNP:1463 G A 281 low_coverage;off_target DP=12;DP4=0,1,0,11;AD=1,11;TYPE=SNP;DBXREF=dbSNP:rs704330,g1000:0.829872; 1 181727030 chr1:SNP:1464 A T 792 off_target DP=67;DP4=21,9,24,13;AD=30,37;TYPE=SNP;DBXREF=dbSNP:rs12564606,g1000:0.271366; 1 181727273 chr1:SNP:1465 G A 760 off_target DP=87;DP4=24,25,15,23;AD=49,38;TYPE=SNP;DBXREF=dbSNP:rs704329,g1000:0.330272,esp5400:0.357377,ExAC:0.407; 1 181732695 chr1:SNP:1466 A G 976 off_target DP=79;DP4=12,22,18,26;AD=34,44;TYPE=SNP;DBXREF=dbSNP:rs72735265,g1000:0.26238,esp5400:0.263696,ExAC:0.254; 1 181741301 chr1:SNP:1467 C T 423 . DP=76;DP4=26,26,12,12;AD=52,24;TYPE=SNP;DBXREF=dbSNP:rs199930,g1000:0.245407,esp5400:0.249392,ExAC:0.248; 1 181752923 chr1:INDEL:95 AAGCTT A 1328 . DP=56;DP4=3,2,24,26;AD=5,50;TYPE=INDEL;DBXREF=dbSNP:rs36163765,g1000:0.8123,ExAC:0.774; 1 181753030 chr1:SNP:1468 T C 335 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs546191,g1000:0.701677; 1 181759657 chr1:SNP:1469 G A 652 . DP=60;DP4=18,11,14,17;AD=29,31;TYPE=SNP;DBXREF=dbSNP:rs704326,g1000:0.276358,esp5400:0.354577,ExAC:0.386,MutationTaster:0; 1 181762760 chr1:SNP:1470 G A 690 off_target DP=74;DP4=24,15,21,14;AD=39,35;TYPE=SNP;DBXREF=dbSNP:rs75408623,g1000:0.0383387,esp5400:0.046466,ExAC:0.047; 1 182354850 chr1:SNP:1471 A G 322 off_target DP=38;DP4=11,11,9,7;AD=22,16;TYPE=SNP;DBXREF=dbSNP:rs2296520,g1000:0.675719,esp5400:0.592396,ExAC:0.574; 1 182355046 chr1:SNP:1472 A G 145 low_coverage;off_target DP=14;DP4=1,6,2,5;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs2296519,g1000:0.675719,esp5400:0.593097,ExAC:0.574; 1 182356399 chr1:SNP:1473 A G 362 . DP=47;DP4=14,14,6,13;AD=28,19;TYPE=SNP;DBXREF=dbSNP:rs1058111,g1000:0.675719,esp5400:0.592582,ExAC:0.575; 1 182550200 chr1:SNP:1474 A G 266 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs501286,g1000:0.997804; 1 182551337 chr1:SNP:1475 A C 2410 . DP=91;DP4=0,0,43,48;AD=0,91;TYPE=SNP;DBXREF=dbSNP:rs627928,g1000:0.479832,esp5400:0.474809,ExAC:0.538,MutationTaster:0; 1 182554557 chr1:SNP:1476 C T 488 . DP=44;DP4=16,5,17,6;AD=21,23;TYPE=SNP;DBXREF=dbSNP:rs486907,g1000:0.230631,esp5400:0.278026,ExAC:0.309,clinvar:rs486907|255,MutationTaster:0; 1 182556036 chr1:SNP:1477 A G 223 off_target DP=22;DP4=1,11,0,10;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs3738579,g1000:0.227236; 1 182784022 chr1:SNP:1478 T C 438 low_coverage;off_target DP=17;DP4=0,0,3,14;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2275171,g1000:0.584065,esp5400:0.634412,ExAC:0.589; 1 182993025 chr1:SNP:1479 C T 1184 . DP=46;DP4=0,0,36,10;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs10911194,g1000:0.519569,esp5400:0.476483,ExAC:0.551; 1 183072590 chr1:SNP:1480 T C 2636 . DP=103;DP4=0,1,48,53;AD=1,101;TYPE=SNP;DBXREF=dbSNP:rs2296288,g1000:0.531949,esp5400:0.500093,ExAC:0.573; 1 183077296 chr1:INDEL:96 A AG 723 off_target DP=32;DP4=0,0,28,2;AD=0,30;TYPE=INDEL;DBXREF=dbSNP:rs3835273,g1000:0.53135; 1 183077615 chr1:SNP:1481 C T 490 low_coverage;off_target DP=19;DP4=0,0,2,17;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs3765521,g1000:0.505192; 1 183077618 chr1:SNP:1482 C T 546 off_target DP=20;DP4=0,0,1,19;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs3765522,g1000:0.531749; 1 183079509 chr1:SNP:1483 C T 765 off_target DP=28;DP4=0,0,28,0;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs2296291,g1000:0.531749; 1 183079853 chr1:SNP:1484 T C 593 off_target DP=23;DP4=0,0,6,17;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs6672093,g1000:0.504992; 1 183084607 chr1:SNP:1485 A G 3174 off_target DP=120;DP4=0,0,59,61;AD=0,120;TYPE=SNP;DBXREF=dbSNP:rs3736888,g1000:0.530351,esp5400:0.036445,ExAC:0.57; 1 183084608 chr1:SNP:1486 C A 10000 off_target DP=119;DP4=0,0,59,60;AD=0,119;TYPE=SNP;DBXREF=dbSNP:rs2027082,g1000:0.530351,esp5400:0.060431,ExAC:0.57; 1 183085568 chr1:SNP:1487 C T 365 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6424887,g1000:0.531749; 1 183085696 chr1:SNP:1488 A G 750 off_target DP=30;DP4=0,0,15,15;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs6424888,g1000:0.530152,esp5400:0.498884,ExAC:0.572; 1 183085755 chr1:SNP:1489 A G 3021 . DP=111;DP4=0,0,74,37;AD=0,111;TYPE=SNP;DBXREF=dbSNP:rs20563,g1000:0.531749,esp5400:0.49907,ExAC:0.572,MutationTaster:0; 1 183086757 chr1:SNP:1490 A C 10000 . DP=149;DP4=2,3,56,88;AD=5,144;TYPE=SNP;DBXREF=dbSNP:rs2296292,g1000:0.531749,esp5400:0.499256,ExAC:0.572; 1 183090751 chr1:SNP:1491 A G 743 off_target DP=28;DP4=0,0,26,2;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs2333621,g1000:0.531749; 1 183093875 chr1:SNP:1492 T C 1908 . DP=72;DP4=0,0,36,36;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs20557,g1000:0.531749,esp5400:0.49907,ExAC:0.572; 1 183094191 chr1:SNP:1493 T C 266 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2093982,g1000:0.53155; 1 183094418 chr1:INDEL:97 AC ACC 651 off_target DP=31;DP4=2,0,26,1;AD=2,27;TYPE=INDEL;DBXREF=dbSNP:rs5779155,g1000:0.53155; 1 183094505 chr1:SNP:1494 T G 449 off_target DP=62;DP4=24,14,17,7;AD=38,24;TYPE=SNP;DBXREF=dbSNP:rs376662027,esp5400:0.000186,ExAC:0.0002965; 1 183094547 chr1:SNP:1495 T C 2431 . DP=98;DP4=1,1,52,44;AD=2,96;TYPE=SNP;DBXREF=dbSNP:rs20558,g1000:0.531749,esp5400:0.499163,ExAC:0.572,MutationTaster:0.998; 1 183094802 chr1:SNP:1496 G A 1147 off_target DP=42;DP4=0,0,0,42;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs10797850,g1000:0.336462; 1 183095024 chr1:SNP:1497 C T 290 low_coverage;off_target DP=12;DP4=1,0,10,1;AD=1,11;TYPE=SNP;DBXREF=dbSNP:rs1886499,g1000:0.531749; 1 183095048 chr1:SNP:1498 G A 215 low_coverage;off_target DP=9;DP4=1,0,8,0;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs1886500,g1000:0.531749; 1 183095185 chr1:INDEL:98 TAAAAAAAAAAAAAA TAAAAAAAAAAAA 184 homopolymer_region;off_target DP=87;DP4=15,3,50,16;AD=18,66;TYPE=INDEL;DBXREF=dbSNP:rs55856623,g1000:0.489816; 1 183095234 chr1:SNP:1499 A G 2495 off_target DP=96;DP4=0,1,39,56;AD=1,95;TYPE=SNP;DBXREF=dbSNP:rs1886501,g1000:0.531749,esp5400:0.49907,ExAC:0.572; 1 183095477 chr1:SNP:1500 G A 1776 off_target DP=67;DP4=0,0,19,48;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs2296293,g1000:0.531749; 1 183096253 chr1:INDEL:99 T TATA 365 low_coverage;off_target DP=17;DP4=2,0,13,1;AD=2,14;TYPE=INDEL;DBXREF=dbSNP:rs3066017,g1000:0.531749; 1 183096634 chr1:SNP:1501 G A 546 off_target DP=20;DP4=0,0,2,18;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1413390,g1000:0.531749; 1 183097609 chr1:SNP:1502 A T 586 off_target DP=29;DP4=3,0,24,0;AD=3,24;TYPE=SNP;DBXREF=dbSNP:rs200840404,g1000:0.498203; 1 183097956 chr1:INDEL:100 G GTTA 209 low_coverage;off_target DP=17;DP4=4,3,0,9;AD=7,9;TYPE=INDEL;DBXREF=dbSNP:rs34133998,g1000:0.53155; 1 183099380 chr1:SNP:1503 T C 450 low_coverage;off_target DP=18;DP4=0,0,16,2;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs1360704,g1000:0.33726; 1 183099701 chr1:SNP:1504 G A 2398 off_target DP=88;DP4=0,0,23,65;AD=0,88;TYPE=SNP;DBXREF=dbSNP:rs2296300,g1000:0.531749,esp5400:0.499163,ExAC:0.571; 1 183099821 chr1:SNP:1505 G A 186 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs6691755,g1000:0.531749; 1 183100555 chr1:SNP:1506 T C 637 off_target DP=24;DP4=0,0,6,18;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2333620,g1000:0.53095,esp5400:0.498978,ExAC:0.569; 1 183100563 chr1:SNP:1507 G T 451 low_coverage;off_target DP=17;DP4=0,0,5,12;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs4997370,g1000:0.575479,esp5400:0.208217; 1 183101427 chr1:INDEL:101 AAAT A 420 low_coverage;off_target DP=19;DP4=2,0,16,0;AD=2,16;TYPE=INDEL;DBXREF=dbSNP:rs148796825,g1000:0.546925; 1 183101444 chr1:SNP:1508 A C 437 low_coverage;off_target DP=17;DP4=1,0,16,0;AD=1,16;TYPE=SNP;DBXREF=dbSNP:rs12071514,g1000:0.546925; 1 183101451 chr1:SNP:1509 T G 479 low_coverage;off_target DP=19;DP4=1,0,18,0;AD=1,18;TYPE=SNP;DBXREF=dbSNP:rs12066735,g1000:0.342652; 1 183101471 chr1:SNP:1510 G A 528 off_target DP=22;DP4=1,0,17,4;AD=1,21;TYPE=SNP;DBXREF=dbSNP:rs12061219,g1000:0.53155; 1 183101686 chr1:SNP:1511 G A 1008 off_target DP=38;DP4=0,0,9,29;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs12095664,g1000:0.531749,esp5400:0.498606,ExAC:0.572; 1 183104013 chr1:SNP:1512 G A 574 off_target DP=21;DP4=0,0,3,18;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2296299,g1000:0.429912; 1 183105399 chr1:SNP:1513 C G 586 off_target DP=25;DP4=2,0,23,0;AD=2,23;TYPE=SNP;DBXREF=dbSNP:rs2296296,g1000:0.552915; 1 183105534 chr1:SNP:1514 T C 1728 . DP=71;DP4=0,1,36,34;AD=1,70;TYPE=SNP;DBXREF=dbSNP:rs20560,g1000:0.560503,esp5400:0.538669,ExAC:0.58; 1 183105705 chr1:SNP:1515 G A 1177 . DP=46;DP4=0,0,14,31;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs20561,g1000:0.351837,esp5400:0.35369,ExAC:0.391; 1 183105897 chr1:INDEL:102 C CATTG 146 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=INDEL;DBXREF=dbSNP:rs10665057,g1000:0.541933; 1 183106739 chr1:SNP:1516 G A 531 off_target DP=20;DP4=0,0,16,4;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs10797854,g1000:0.520168; 1 183112041 chr1:SNP:1517 G C 218 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3359,g1000:0.576278; 1 183155482 chr1:SNP:1518 C A 379 . DP=40;DP4=12,9,6,13;AD=21,19;TYPE=SNP;DBXREF=dbSNP:rs684527,g1000:0.27476,esp5400:0.21281,ExAC:0.294; 1 183155700 chr1:SNP:1519 C A 162 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs6678888,g1000:0.321286; 1 183155715 chr1:INDEL:103 CT C 136 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=INDEL;DBXREF=dbSNP:rs60707856,g1000:0.612021; 1 183177218 chr1:SNP:1520 A G 1920 off_target DP=78;DP4=0,2,25,51;AD=2,76;TYPE=SNP;DBXREF=dbSNP:rs647347,g1000:0.496206,esp5400:0.44525,ExAC:0.473,clinvar:rs647347|2; 1 183177243 chr1:SNP:1521 G A 463 off_target DP=64;DP4=8,32,6,18;AD=40,24;TYPE=SNP;DBXREF=dbSNP:rs61809149,g1000:0.00898562,esp5400:0.022588,ExAC:0.025; 1 183204831 chr1:SNP:1522 C G 491 . DP=43;DP4=5,15,5,18;AD=20,23;TYPE=SNP;DBXREF=dbSNP:rs144355456,g1000:0.00259585,esp5400:0.003904,ExAC:0.004876,MutationTaster:0; 1 183525452 chr1:SNP:1523 T G 337 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs699244,g1000:0.927516; 1 183555779 chr1:SNP:1524 C T 284 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs11578964,g1000:0.295327; 1 183558996 chr1:SNP:1525 G A 134 low_coverage;off_target DP=12;DP4=6,0,5,1;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs34110768,g1000:0.0944489; 1 183559105 chr1:SNP:1526 G A 185 off_target DP=24;DP4=15,0,8,1;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs10911365,g1000:0.202875; 1 183559704 chr1:SNP:1527 A C 112 low_coverage;off_target DP=9;DP4=0,4,0,5;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs2274065,g1000:0.204273; 1 185833565 chr1:SNP:1528 A C 110 low_coverage;off_target DP=11;DP4=4,2,2,3;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs7556537,g1000:0.610024,esp5400:0.592861,ExAC:0.497; 1 185834847 chr1:INDEL:104 GTTTC G 203 off_target DP=32;DP4=17,3,8,2;AD=20,10;TYPE=INDEL;DBXREF=dbSNP:rs34137386,g1000:0.165935,ExAC:0.199; 1 185984517 chr1:SNP:1529 T C 770 . DP=65;DP4=8,20,16,21;AD=28,37;TYPE=SNP;DBXREF=dbSNP:rs6665753,g1000:0.343051,esp5400:0.346039,ExAC:0.426; 1 186022032 chr1:SNP:1530 T G 481 off_target DP=71;DP4=28,16,20,7;AD=44,27;TYPE=SNP;DBXREF=dbSNP:rs10911808,g1000:0.67472,esp5400:0.658526; 1 186026474 chr1:SNP:1531 T C 881 . DP=100;DP4=29,27,24,20;AD=56,44;TYPE=SNP;DBXREF=dbSNP:rs12129650,g1000:0.529952,esp5400:0.525469,ExAC:0.539,MutationTaster:1; 1 186030902 chr1:SNP:1532 G T 399 off_target DP=52;DP4=23,8,16,5;AD=31,21;TYPE=SNP;DBXREF=dbSNP:rs10737266,g1000:0.629992; 1 186031041 chr1:SNP:1533 C T 960 . DP=90;DP4=15,29,23,23;AD=44,46;TYPE=SNP;DBXREF=dbSNP:rs7522627,g1000:0.654353,esp5400:0.627905,ExAC:0.598; 1 186034655 chr1:SNP:1534 T C 1052 off_target DP=113;DP4=22,37,18,34;AD=59,52;TYPE=SNP;DBXREF=dbSNP:rs71634151,g1000:0.0091853; 1 186047172 chr1:SNP:1535 G C 379 off_target DP=41;DP4=14,9,11,7;AD=23,18;TYPE=SNP;DBXREF=dbSNP:rs41317481,g1000:0.000798722; 1 186050417 chr1:SNP:1536 A G 938 . DP=91;DP4=28,19,31,13;AD=47,44;TYPE=SNP;DBXREF=dbSNP:rs10798035,g1000:0.582668,esp5400:0.553635,ExAC:0.545,clinvar:rs10798035|2,MutationTaster:1; 1 186055371 chr1:SNP:1537 A G 465 . DP=55;DP4=15,16,13,11;AD=31,24;TYPE=SNP;DBXREF=dbSNP:rs6425017,g1000:0.661342,esp5400:0.628208,ExAC:0.578; 1 186057181 chr1:SNP:1538 T C 662 off_target DP=75;DP4=29,12,23,11;AD=41,34;TYPE=SNP;DBXREF=dbSNP:rs10911816,g1000:0.686502,esp5400:0.63971,ExAC:0.588; 1 186089112 chr1:SNP:1539 T C 484 off_target DP=50;DP4=4,20,6,19;AD=24,25;TYPE=SNP;DBXREF=dbSNP:rs2383434,g1000:0.472045,esp5400:0.373187,ExAC:0.407; 1 186092076 chr1:SNP:1540 A C 539 . DP=45;DP4=13,7,21,4;AD=20,25;TYPE=SNP;DBXREF=dbSNP:rs2057388,g1000:0.599441,esp5400:0.510318,ExAC:0.47; 1 186101539 chr1:SNP:1541 A G 1476 . DP=138;DP4=39,26,47,26;AD=65,73;TYPE=SNP;DBXREF=dbSNP:rs10911825,g1000:0.484425,esp5400:0.37235,ExAC:0.37,MutationTaster:1; 1 186101744 chr1:SNP:1542 C T 202 off_target DP=28;DP4=0,17,0,11;AD=17,11;TYPE=SNP;DBXREF=dbSNP:rs10911826,g1000:0.483027; 1 186649221 chr1:SNP:1543 A G 319 low_coverage;off_target DP=12;DP4=0,0,11,1;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2745557,g1000:0.854034; 1 186901738 chr1:INDEL:105 TTCTTCTTTTAAAA T 594 off_target DP=24;DP4=1,1,22,0;AD=2,22;TYPE=INDEL;DBXREF=dbSNP:rs12720584,g1000:0.315895; 1 186915663 chr1:SNP:1544 C A 319 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs10911965,g1000:0.981629; 1 186915664 chr1:SNP:1545 A G 328 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs10911966,g1000:0.981629; 1 186919732 chr1:SNP:1546 A T 710 off_target DP=26;DP4=0,0,22,4;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs4650709,g1000:0.981629,esp5400:0.952648; 1 186919993 chr1:SNP:1547 G A 770 off_target DP=29;DP4=0,0,5,24;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs969357,g1000:0.981629; 1 186925168 chr1:SNP:1548 A G 792 off_target DP=29;DP4=0,0,29,0;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs5007825,g1000:0.981629; 1 186925194 chr1:SNP:1549 T C 584 off_target DP=22;DP4=0,0,22,0;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs5007824,g1000:0.981629,esp5400:0.959193,ExAC:0.955; 1 186925552 chr1:SNP:1550 T C 246 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2307199,g1000:0.981629; 1 186946912 chr1:SNP:1551 G A 1528 . DP=56;DP4=0,0,21,35;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs2307198,g1000:0.988219,esp5400:0.985406,ExAC:0.98,MutationTaster:0.03; 1 192778159 chr1:SNP:1552 A T 393 off_target DP=25;DP4=3,4,11,7;AD=7,18;TYPE=SNP;DBXREF=dbSNP:rs12130714,g1000:0.0826677,esp5400:0.137758,ExAC:0.122; 1 192779945 chr1:SNP:1553 G A 160 low_coverage;off_target DP=18;DP4=10,0,8,0;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs190312590,g1000:0.00299521; 1 196654324 chr1:SNP:1554 A C 1432 . DP=54;DP4=0,0,17,37;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs1061147,g1000:0.713059,esp5400:0.609613,ExAC:0.667; 1 196658497 chr1:SNP:1555 G T 738 off_target DP=27;DP4=0,0,20,7;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs482934,g1000:0.78155; 1 196659237 chr1:SNP:1556 C T 2288 . DP=89;DP4=0,0,46,43;AD=0,89;TYPE=SNP;DBXREF=dbSNP:rs1061170,g1000:0.733427,esp5400:0.625767,ExAC:0.671,clinvar:rs1061170|,MutationTaster:0; 1 196695742 chr1:SNP:1557 A G 543 . DP=46;DP4=3,17,11,15;AD=20,26;TYPE=SNP;DBXREF=dbSNP:rs3753396,g1000:0.202875,esp5400:0.137665,ExAC:0.195; 1 196705926 chr1:SNP:1558 C A 113 low_coverage;off_target DP=10;DP4=3,1,3,3;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs375046,g1000:0.77476,esp5400:0.375997,ExAC:0.426; 1 196709774 chr1:SNP:1559 G T 248 low_coverage DP=18;DP4=4,2,7,5;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs1065489,g1000:0.203275,esp5400:0.13878,ExAC:0.195,MutationTaster:0; 1 196712577 chr1:SNP:1560 T C 276 . DP=66;DP4=32,18,15,1;AD=50,16;TYPE=SNP;DBXREF=dbSNP:rs513699,esp5400:0.020268; 1 196712586 chr1:SNP:1561 C T 502 . DP=83;DP4=36,19,24,4;AD=55,28;TYPE=SNP;DBXREF=dbSNP:rs61822181,esp5400:0.03746; 1 196712902 chr1:SNP:1562 C T 197 off_target DP=31;DP4=0,21,0,10;AD=21,10;TYPE=SNP;DBXREF=dbSNP:rs35352142,g1000:0.192093; 1 196715008 chr1:SNP:1563 G A 116 low_variant_fraction DP=151;DP4=70,71,6,4;AD=141,10;TYPE=SNP;DBXREF=dbSNP:rs41265217,esp5400:9.3e-05; 1 196743826 chr1:SNP:1564 T G 222 off_target DP=23;DP4=12,0,11,0;AD=12,11;TYPE=SNP;DBXREF=dbSNP:rs369561,g1000:0.36222; 1 196743927 chr1:SNP:1565 A C 661 off_target DP=58;DP4=18,8,25,7;AD=26,32;TYPE=SNP;DBXREF=dbSNP:rs385390,g1000:0.327476; 1 196743964 chr1:SNP:1566 C A 917 off_target DP=96;DP4=33,18,23,22;AD=51,45;TYPE=SNP;DBXREF=dbSNP:rs446868,g1000:0.297724,esp5400:0.247679; 1 196757258 chr1:SNP:1567 C T 322 low_coverage;off_target DP=17;DP4=3,0,14,0;AD=3,14;TYPE=SNP;DBXREF=dbSNP:rs400642,g1000:0.646765; 1 196757392 chr1:SNP:1568 C T 1178 . DP=87;DP4=18,14,29,26;AD=32,55;TYPE=SNP;DBXREF=dbSNP:rs400344,g1000:0.649361,esp5400:0.415272,ExAC:0.536; 1 196758778 chr1:SNP:1569 G A 178 low_coverage;off_target DP=14;DP4=3,3,7,1;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs384032,g1000:0.33127; 1 196759037 chr1:SNP:1570 G A 118 off_target DP=20;DP4=14,0,5,1;AD=14,6;TYPE=SNP;DBXREF=dbSNP:rs374905,g1000:0.375599; 1 196762302 chr1:SNP:1571 C A 145 low_coverage;off_target DP=16;DP4=9,0,7,0;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs387000,g1000:0.358826; 1 196794426 chr1:SNP:1572 G C 345 off_target DP=20;DP4=5,0,15,0;AD=5,15;TYPE=SNP;DBXREF=dbSNP:rs416726,g1000:0.495407; 1 196794449 chr1:INDEL:106 G GT 321 off_target DP=29;DP4=11,0,17,0;AD=11,17;TYPE=INDEL;DBXREF=dbSNP:rs11393029,g1000:0.540735; 1 196794519 chr1:SNP:1573 C T 372 off_target DP=44;DP4=26,0,18,0;AD=26,18;TYPE=SNP;DBXREF=dbSNP:rs442759,g1000:0.472444; 1 196794867 chr1:SNP:1574 G A 178 low_coverage;off_target DP=14;DP4=0,6,0,8;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs372075,g1000:0.13778; 1 196795844 chr1:SNP:1575 C T 158 off_target DP=25;DP4=17,0,8,0;AD=17,8;TYPE=SNP;DBXREF=dbSNP:rs111662284,g1000:0.0848642; 1 196795849 chr1:SNP:1576 A G 196 off_target DP=27;DP4=17,0,10,0;AD=17,10;TYPE=SNP;DBXREF=dbSNP:rs424722,g1000:0.473642; 1 196797123 chr1:SNP:1577 C T 182 off_target DP=22;DP4=10,3,7,2;AD=13,9;TYPE=SNP;DBXREF=dbSNP:rs677961,g1000:0.473842; 1 196797238 chr1:SNP:1578 C T 238 low_variant_fraction DP=98;DP4=55,28,2,13;AD=83,15;TYPE=SNP;DBXREF=dbSNP:rs425757,esp5400:0.304841,ExAC:0.328,MutationTaster:0; 1 196799433 chr1:SNP:1579 C T 165 low_coverage;off_target DP=16;DP4=8,0,8,0;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs408519,g1000:0.471645; 1 196799556 chr1:SNP:1580 T C 309 off_target DP=43;DP4=17,9,14,3;AD=26,17;TYPE=SNP;DBXREF=dbSNP:rs114252579,g1000:0.0117812; 1 196799691 chr1:SNP:1581 G A 1609 . DP=140;DP4=30,36,41,33;AD=66,74;TYPE=SNP;DBXREF=dbSNP:rs12406079,g1000:0.0952476,esp5400:0.133555,ExAC:0.12; 1 196801042 chr1:SNP:1582 G T 1702 . DP=152;DP4=26,45,39,42;AD=71,81;TYPE=SNP;DBXREF=dbSNP:rs4230,g1000:0.507388,esp5400:0.486766,ExAC:0.454; 1 196801078 chr1:SNP:1583 A T 1634 . DP=140;DP4=29,34,38,39;AD=63,77;TYPE=SNP;DBXREF=dbSNP:rs414628,g1000:0.423722,esp5400:0.400984,ExAC:0.429; 1 196801190 chr1:SNP:1584 C A 783 off_target DP=49;DP4=6,8,8,27;AD=14,35;TYPE=SNP;DBXREF=dbSNP:rs390679,g1000:0.423522; 1 196801321 chr1:SNP:1585 T G 285 low_coverage;off_target DP=18;DP4=0,6,0,12;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs401332,g1000:0.472644; 1 196874356 chr1:SNP:1586 G T 2093 . DP=79;DP4=0,0,35,44;AD=0,79;TYPE=SNP;DBXREF=dbSNP:rs10801578,g1000:0.994409,ExAC:0.998,MutationTaster:0; 1 196876458 chr1:SNP:1587 A G 647 . DP=46;DP4=9,8,17,12;AD=17,29;TYPE=SNP;DBXREF=dbSNP:rs7417769,g1000:0.589058,ExAC:0.682,MutationTaster:0; 1 196884258 chr1:SNP:1588 A T 552 . DP=105;DP4=28,44,17,16;AD=72,33;TYPE=SNP;DBXREF=dbSNP:rs150845796,esp5400:0.168404; 1 196884290 chr1:SNP:1589 T A 345 off_target DP=81;DP4=18,43,4,16;AD=61,20;TYPE=SNP;DBXREF=dbSNP:rs394413,esp5400:0.147798; 1 196887181 chr1:SNP:1590 T G 337 off_target DP=20;DP4=6,0,14,0;AD=6,14;TYPE=SNP;DBXREF=dbSNP:rs1971579,g1000:0.40595; 1 196887274 chr1:SNP:1591 G A 518 off_target DP=49;DP4=22,3,24,0;AD=25,24;TYPE=SNP;DBXREF=dbSNP:rs3795341,g1000:0.165935; 1 196920178 chr1:SNP:1592 C T 191 off_target DP=21;DP4=2,10,2,7;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs3828032,g1000:0.320887,esp5400:0.347462,ExAC:0.29; 1 196926956 chr1:SNP:1593 C T 591 off_target DP=52;DP4=18,7,18,9;AD=25,27;TYPE=SNP;DBXREF=dbSNP:rs3748556,g1000:0.371805; 1 196926973 chr1:SNP:1594 C A 646 off_target DP=62;DP4=20,11,21,10;AD=31,31;TYPE=SNP;DBXREF=dbSNP:rs3748555,g1000:0.320887,esp5400:0.345832,ExAC:0.289; 1 196946869 chr1:SNP:1595 T A 187 off_target DP=23;DP4=8,6,5,4;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs3748557,g1000:0.157748,esp5400:0.183956,ExAC:0.208; 1 196952268 chr1:SNP:1596 C T 268 off_target DP=25;DP4=1,11,2,11;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs45489701,g1000:0.182508; 1 196967354 chr1:SNP:1597 G A 419 . DP=50;DP4=13,16,11,10;AD=29,21;TYPE=SNP;DBXREF=dbSNP:rs35662416,g1000:0.0103834,esp5400:0.021019,ExAC:0.016,MutationTaster:0; 1 197008365 chr1:SNP:1598 C T 451 low_coverage;off_target DP=17;DP4=0,0,16,1;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs698859,g1000:0.228435; 1 197022093 chr1:INDEL:107 TCTCA T 557 off_target DP=24;DP4=0,3,0,21;AD=3,21;TYPE=INDEL;DBXREF=dbSNP:rs17514317; 1 197026672 chr1:SNP:1599 A G 656 off_target DP=24;DP4=0,0,0,24;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs1759009,g1000:0.868211; 1 197030201 chr1:SNP:1600 T C 1364 . DP=53;DP4=0,0,37,16;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs5997,g1000:0.783746,esp5400:0.753626,ExAC:0.878,clinvar:rs5997|2; 1 197031021 chr1:SNP:1601 C T 1564 . DP=59;DP4=0,0,26,33;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs6003,g1000:0.761781,esp5400:0.735453,ExAC:0.872,clinvar:rs6003|255|2,MutationTaster:0; 1 197053373 chr1:SNP:1602 G A 191 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs12677,g1000:0.782348; 1 197055925 chr1:SNP:1603 T C 1236 . DP=48;DP4=0,0,29,19;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs10754213,g1000:0.782748,esp5400:0.752466,ExAC:0.878,clinvar:rs10754213|255; 1 197059928 chr1:SNP:1604 A G 465 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs4915316,g1000:0.75639,esp5400:0.716841; 1 197060358 chr1:INDEL:108 CTG C 206 low_coverage;off_target DP=18;DP4=0,9,0,9;AD=9,9;TYPE=INDEL;DBXREF=dbSNP:rs35277950,g1000:0.787141; 1 197062923 chr1:SNP:1605 T C 266 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs10801588,g1000:0.75639; 1 197063352 chr1:SNP:1606 C T 1194 off_target DP=45;DP4=0,0,19,26;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs41304071,g1000:0.214257,esp5400:0.308147,ExAC:0.301,clinvar:rs41304071|3; 1 197070442 chr1:SNP:1607 G T 10000 . DP=226;DP4=4,3,136,83;AD=7,219;TYPE=SNP;DBXREF=dbSNP:rs3762271,g1000:0.214257,esp5400:0.319814,ExAC:0.339,clinvar:rs3762271|2|2,MutationTaster:0.201; 1 197070697 chr1:SNP:1608 T C 10000 . DP=139;DP4=0,1,68,69;AD=1,137;TYPE=SNP;DBXREF=dbSNP:rs41310927,g1000:0.214257,esp5400:0.316964,ExAC:0.34,clinvar:rs41310927|2|2,MutationTaster:1; 1 197070707 chr1:SNP:1609 G A 10000 . DP=143;DP4=0,1,75,67;AD=1,142;TYPE=SNP;DBXREF=dbSNP:rs41308365,g1000:0.214257,esp5400:0.318207,ExAC:0.339,clinvar:rs41308365|2|2; 1 197070815 chr1:SNP:1610 T C 10000 . DP=163;DP4=0,0,91,72;AD=0,163;TYPE=SNP;DBXREF=dbSNP:rs1412640,g1000:0.815895,esp5400:0.785156,ExAC:0.887,clinvar:rs1412640|2|255; 1 197070901 chr1:SNP:1611 A G 10000 . DP=236;DP4=0,0,118,118;AD=0,236;TYPE=SNP;DBXREF=dbSNP:rs964201,g1000:0.997404,esp5400:0.996466,ExAC:0.996,clinvar:rs964201|2|2,MutationTaster:1; 1 197072420 chr1:SNP:1612 T C 10000 . DP=197;DP4=1,0,86,110;AD=1,196;TYPE=SNP;DBXREF=dbSNP:rs41310925,g1000:0.213059,esp5400:0.317894,ExAC:0.34,clinvar:rs41310925|2|2; 1 197073932 chr1:SNP:1613 T C 823 . DP=31;DP4=0,0,14,17;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2878749,g1000:0.214457,esp5400:0.319333,ExAC:0.34,clinvar:rs2878749|2|2; 1 197086669 chr1:SNP:1614 C T 281 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs10754215,g1000:0.767572; 1 197091537 chr1:SNP:1615 A T 2647 . DP=100;DP4=0,0,36,64;AD=0,100;TYPE=SNP;DBXREF=dbSNP:rs4915337,g1000:0.782548,esp5400:0.751906,ExAC:0.878,clinvar:rs4915337|2|255; 1 197091756 chr1:SNP:1616 C T 235 low_coverage;off_target DP=18;DP4=1,7,0,10;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs375657127,g1000:0.00119808,esp5400:0.000558,ExAC:0.0002027; 1 197093098 chr1:SNP:1617 A T 1147 off_target DP=42;DP4=0,0,42,0;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs6685259,g1000:0.898363; 1 197093832 chr1:SNP:1618 T C 266 low_coverage;off_target DP=10;DP4=0,0,3,7;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs4915338,g1000:0.754593; 1 197097891 chr1:INDEL:109 AAAAT A 1054 off_target DP=42;DP4=1,1,1,38;AD=2,39;TYPE=INDEL;DBXREF=dbSNP:rs150344996,g1000:0.214257; 1 197101303 chr1:SNP:1619 C A 557 off_target DP=21;DP4=0,0,18,3;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs3737110,g1000:0.213059; 1 197104149 chr1:INDEL:110 TAAA TAA 329 off_target DP=30;DP4=1,0,26,3;AD=1,29;TYPE=INDEL;DBXREF=dbSNP:rs35659894,g1000:0.75599; 1 197109042 chr1:SNP:1620 C T 2160 off_target DP=84;DP4=0,0,40,44;AD=0,84;TYPE=SNP;DBXREF=dbSNP:rs1332663,g1000:0.782548,esp5400:0.752747,ExAC:0.875,clinvar:rs1332663|3; 1 197112533 chr1:SNP:1621 G A 10000 . DP=153;DP4=0,0,71,82;AD=0,153;TYPE=SNP;DBXREF=dbSNP:rs6677082,g1000:0.755591,esp5400:0.728059,ExAC:0.869,clinvar:rs6677082|255; 1 197113073 chr1:SNP:1622 G A 799 off_target DP=31;DP4=0,0,17,14;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs1571964,g1000:0.755591,esp5400:0.727264,ExAC:0.868,clinvar:rs1571964|255; 1 197141243 chr1:SNP:1623 A C 372 low_coverage;off_target DP=14;DP4=0,0,12,2;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6428389,g1000:0.692093,esp5400:0.74859,ExAC:0.791; 1 197145999 chr1:SNP:1624 C A 372 low_coverage;off_target DP=14;DP4=0,0,2,12;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs61819117,g1000:0.214257; 1 197147471 chr1:SNP:1625 A C 425 low_coverage;off_target DP=16;DP4=0,0,14,2;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs61819118,g1000:0.214257; 1 197297408 chr1:SNP:1626 A G 478 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs550098,g1000:0.737819; 1 197316435 chr1:SNP:1627 T C 387 off_target DP=37;DP4=16,2,13,6;AD=18,19;TYPE=SNP;DBXREF=dbSNP:rs1337167,g1000:0.839257,esp5400:0.831474,ExAC:0.818,clinvar:rs1337167|2; 1 197390368 chr1:SNP:1628 A G 3148 . DP=119;DP4=0,0,57,62;AD=0,119;TYPE=SNP;DBXREF=dbSNP:rs3902057,g1000:0.919728,esp5400:0.921361,ExAC:0.978,clinvar:rs3902057|2; 1 197446702 chr1:SNP:1629 G T 628 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs1135810,g1000:0.332069,ExAC:0.348; 1 198672299 chr1:SNP:1630 T C 195 low_coverage;off_target DP=15;DP4=6,0,7,2;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs16843742,g1000:0.202476; 1 198687125 chr1:SNP:1631 A G 246 low_coverage;off_target DP=15;DP4=4,0,10,0;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs12407767,g1000:0.0555112; 1 201009897 chr1:SNP:1632 T C 1310 off_target DP=48;DP4=0,0,16,32;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs6427875,g1000:0.997005,esp5400:0.990706; 1 201020105 chr1:SNP:1633 A G 476 . DP=36;DP4=8,7,11,10;AD=15,21;TYPE=SNP;DBXREF=dbSNP:rs6702590,g1000:0.880391,esp5400:0.758877,ExAC:0.77,clinvar:rs6702590|2; 1 201038687 chr1:SNP:1634 A G 1875 . DP=72;DP4=2,0,38,32;AD=2,70;TYPE=SNP;DBXREF=dbSNP:rs7415038,g1000:0.294129,esp5400:0.472968,ExAC:0.303,clinvar:rs7415038|2; 1 201043845 chr1:INDEL:111 ACT A 284 low_coverage;off_target DP=14;DP4=0,3,0,11;AD=3,11;TYPE=INDEL;DBXREF=dbSNP:rs66932448,g1000:0.758387; 1 201044748 chr1:SNP:1635 A G 929 . DP=35;DP4=0,0,12,23;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs1998721,g1000:0.759585,esp5400:0.699851,ExAC:0.781,clinvar:rs1998721|2; 1 201047075 chr1:SNP:1636 A G 2119 . DP=80;DP4=0,0,46,34;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs4915477,g1000:0.571086,esp5400:0.73694,ExAC:0.584,clinvar:rs4915477|2; 1 201047111 chr1:SNP:1637 A G 2676 . DP=100;DP4=1,0,54,45;AD=1,99;TYPE=SNP;DBXREF=dbSNP:rs9427714,g1000:0.126997,esp5400:0.274493,ExAC:0.245,clinvar:rs9427714|2; 1 201052310 chr1:SNP:1638 A T 1061 . DP=40;DP4=0,0,31,9;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs12742169,g1000:0.127196,esp5400:0.27282,ExAC:0.243,clinvar:rs12742169|2,MutationTaster:0; 1 201052312 chr1:SNP:1639 A C 1114 . DP=42;DP4=0,0,31,11;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs12742170,g1000:0.127196,esp5400:0.27282,ExAC:0.243,clinvar:rs12742170|2; 1 201052474 chr1:SNP:1640 T C 2321 off_target DP=91;DP4=1,1,25,64;AD=2,89;TYPE=SNP;DBXREF=dbSNP:rs12724643,g1000:0.127196,esp5400:0.272913,ExAC:0.244; 1 201052562 chr1:SNP:1641 G T 281 low_coverage;off_target DP=10;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs12743065,g1000:0.127196; 1 201058692 chr1:SNP:1642 T C 478 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2296384,g1000:0.521765; 1 201060865 chr1:SNP:1643 G A 982 . DP=37;DP4=0,0,18,19;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2296383,g1000:0.305112,esp5400:0.328221,ExAC:0.388,clinvar:rs2296383|2; 1 201112981 chr1:SNP:1644 A G 3031 . DP=118;DP4=0,0,71,47;AD=0,118;TYPE=SNP;DBXREF=dbSNP:rs8158,g1000:0.693091,esp5400:0.729968,ExAC:0.748; 1 201113118 chr1:SNP:1645 A G 1398 off_target DP=56;DP4=0,0,18,38;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs3738266,g1000:0.938698,esp5400:0.946541,ExAC:0.941; 1 201115822 chr1:SNP:1646 A G 414 off_target DP=38;DP4=13,6,13,6;AD=19,19;TYPE=SNP;DBXREF=dbSNP:rs3752978,g1000:0.357228,esp5400:0.358245,ExAC:0.324; 1 201116018 chr1:SNP:1647 C G 1004 off_target DP=39;DP4=0,0,13,26;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs3752979,g1000:0.938698,esp5400:0.946634,ExAC:0.941; 1 201122947 chr1:SNP:1648 T G 1419 off_target DP=52;DP4=0,0,45,7;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs1925361,g1000:0.939497,esp5400:0.946087,ExAC:0.941; 1 201285712 chr1:SNP:1649 C T 200 . DP=22;DP4=7,4,8,2;AD=11,10;TYPE=SNP;DBXREF=dbSNP:rs7514146,g1000:0.150958,esp5400:0.152538,ExAC:0.111; 1 201285759 chr1:SNP:1650 A G 1696 . DP=64;DP4=0,0,40,24;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs1779297,g1000:0.969449,esp5400:0.965142,ExAC:0.989; 1 201285909 chr1:SNP:1651 A G 451 low_coverage;off_target DP=17;DP4=0,0,1,16;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs1534051,g1000:0.811502; 1 201288007 chr1:SNP:1652 G A 181 low_coverage;off_target DP=15;DP4=0,7,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs1794868,g1000:0.79373; 1 201288898 chr1:SNP:1653 A C 1555 off_target DP=57;DP4=0,0,29,28;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs1722759,g1000:0.989417,esp5400:0.987265,ExAC:0.996; 1 201289545 chr1:SNP:1654 G A 185 off_target DP=34;DP4=9,15,3,7;AD=24,10;TYPE=SNP;DBXREF=dbSNP:rs6427898,g1000:0.151558,esp5400:0.152473,ExAC:0.111; 1 201289646 chr1:SNP:1655 T C 119 low_coverage;off_target DP=8;DP4=0,3,0,5;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs1628711,g1000:0.793131; 1 201290968 chr1:SNP:1656 T G 319 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1779292,g1000:0.989417; 1 201290985 chr1:SNP:1657 C T 275 low_coverage;off_target DP=14;DP4=3,0,11,0;AD=3,11;TYPE=SNP;DBXREF=dbSNP:rs12122545,g1000:0.131589; 1 201291066 chr1:SNP:1658 C T 583 off_target DP=51;DP4=20,2,21,8;AD=22,29;TYPE=SNP;DBXREF=dbSNP:rs2071960,g1000:0.628594,esp5400:0.601878,ExAC:0.675; 1 201292110 chr1:SNP:1659 T C 258 low_coverage;off_target DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1779288,g1000:0.989417,esp5400:0.98773,ExAC:0.996; 1 201328824 chr1:SNP:1660 G A 792 off_target DP=95;DP4=21,33,16,24;AD=54,40;TYPE=SNP;DBXREF=dbSNP:rs2275863,g1000:0.277157,esp5400:0.228279,ExAC:0.135,clinvar:rs2275863|2; 1 201328913 chr1:SNP:1661 G C 261 off_target DP=25;DP4=2,11,0,12;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs45509695,g1000:0.277955; 1 201334382 chr1:SNP:1662 G A 3016 . DP=114;DP4=0,0,49,65;AD=0,114;TYPE=SNP;DBXREF=dbSNP:rs3729547,g1000:0.695088,esp5400:0.687302,ExAC:0.719,clinvar:rs3729547|2|2; 1 201335899 chr1:SNP:1663 C T 365 low_coverage;off_target DP=13;DP4=0,0,8,5;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1573230,g1000:0.98143,esp5400:0.981447; 1 201336984 chr1:SNP:1664 C T 573 off_target DP=51;DP4=7,17,12,15;AD=24,27;TYPE=SNP;DBXREF=dbSNP:rs3729843,g1000:0.285543,esp5400:0.329336,ExAC:0.413,clinvar:rs3729843|2; 1 201337170 chr1:SNP:1665 A G 600 off_target DP=24;DP4=0,0,19,5;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs3729842,g1000:0.86222; 1 201338553 chr1:SNP:1666 T C 1299 off_target DP=49;DP4=0,0,18,31;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs10800776,g1000:0.734625,esp5400:0.728819; 1 201338586 chr1:SNP:1667 A G 237 off_target DP=21;DP4=2,8,3,8;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs10920183,g1000:0.519169; 1 201338896 chr1:SNP:1668 T C 795 off_target DP=66;DP4=16,13,23,14;AD=29,37;TYPE=SNP;DBXREF=dbSNP:rs10920184,g1000:0.529952,esp5400:0.529838,ExAC:0.597; 1 201339043 chr1:SNP:1669 C T 308 off_target DP=33;DP4=5,13,3,12;AD=18,15;TYPE=SNP;DBXREF=dbSNP:rs12049476,g1000:0.536142,esp5400:0.572356; 1 201341175 chr1:INDEL:112 CAGAAG C 1435 . DP=176;DP4=66,38,39,30;AD=104,69;TYPE=INDEL;DBXREF=dbSNP:rs45533739,g1000:0.520367,clinvar:rs45533739|2; 1 201341341 chr1:SNP:1670 C T 1405 off_target DP=53;DP4=0,0,8,45;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs868407,g1000:0.771765,esp5400:0.727273; 1 202566200 chr1:SNP:1671 T C 292 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs9633344,g1000:0.649161; 1 202574784 chr1:SNP:1672 G A 2647 . DP=100;DP4=0,0,59,41;AD=0,100;TYPE=SNP;DBXREF=dbSNP:rs1968583,g1000:0.358826,esp5400:0.401097,ExAC:0.47; 1 203098275 chr1:SNP:1673 T G 1743 . DP=133;DP4=23,30,27,53;AD=53,80;TYPE=SNP;DBXREF=dbSNP:rs2228079,g1000:0.233626,esp5400:0.261852,ExAC:0.305; 1 203098455 chr1:SNP:1674 T C 103 low_coverage;off_target DP=17;DP4=0,12,0,5;AD=12,5;TYPE=SNP;DBXREF=dbSNP:rs10920569,g1000:0.229233; 1 203148633 chr1:SNP:1675 A G 3028 . DP=113;DP4=0,1,59,53;AD=1,112;TYPE=SNP;DBXREF=dbSNP:rs4950927,g1000:0.999601,esp5400:0.998048,ExAC:0.999,MutationTaster:1; 1 203152801 chr1:SNP:1676 T C 982 . DP=37;DP4=0,0,29,8;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs880633,g1000:0.373003,esp5400:0.411787,ExAC:0.455,MutationTaster:0.827; 1 203153634 chr1:SNP:1677 C G 1061 off_target DP=40;DP4=0,0,32,8;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2071579,g1000:0.371406,esp5400:0.456401; 1 203154532 chr1:SNP:1678 A G 2031 off_target DP=80;DP4=0,0,23,55;AD=0,78;TYPE=SNP;DBXREF=dbSNP:rs1538372,g1000:0.676318,esp5400:0.680238,ExAC:0.655; 1 203192137 chr1:SNP:1679 T C 242 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3820145,g1000:0.241414; 1 203192567 chr1:SNP:1680 G T 319 low_coverage;off_target DP=12;DP4=0,0,4,8;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2297949,g1000:0.23762; 1 203192820 chr1:SNP:1681 C T 873 off_target DP=37;DP4=0,1,9,26;AD=1,35;TYPE=SNP;DBXREF=dbSNP:rs10920586,g1000:0.3125,esp5400:0.278305,ExAC:0.317; 1 203194186 chr1:SNP:1682 C T 1957 . DP=81;DP4=2,1,46,32;AD=3,78;TYPE=SNP;DBXREF=dbSNP:rs2297950,g1000:0.290935,esp5400:0.281,ExAC:0.303,clinvar:rs2297950|255,MutationTaster:1; 1 203195006 chr1:SNP:1683 G A 187 . DP=23;DP4=3,11,1,8;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs116389839,g1000:0.00179712,esp5400:0.004927,ExAC:0.0071; 1 203652444 chr1:SNP:1684 A G 10000 . DP=143;DP4=0,0,60,83;AD=0,143;TYPE=SNP;DBXREF=dbSNP:rs1419114,g1000:0.85004,esp5400:0.829057,ExAC:0.876; 1 203652683 chr1:SNP:1685 C G 355 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4951369,g1000:0.85024; 1 203652698 chr1:SNP:1686 T C 301 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4951070,g1000:0.85024; 1 203667409 chr1:SNP:1687 T C 1467 . DP=57;DP4=0,0,20,37;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs2228445,g1000:0.859824,esp5400:0.845975,ExAC:0.88; 1 203671125 chr1:SNP:1688 A T 529 off_target DP=40;DP4=12,4,15,9;AD=16,24;TYPE=SNP;DBXREF=dbSNP:rs78023704,g1000:0.00938498,esp5400:0.002975,ExAC:0.007347; 1 203677250 chr1:SNP:1689 G A 702 off_target DP=70;DP4=17,19,12,22;AD=36,34;TYPE=SNP;DBXREF=dbSNP:rs3753036,g1000:0.154752,esp5400:0.142777,ExAC:0.166; 1 203679934 chr1:SNP:1690 A G 278 off_target DP=25;DP4=9,3,11,2;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs2032018,g1000:0.654952; 1 203681503 chr1:SNP:1691 A G 239 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs12407860,g1000:0.647764; 1 203689936 chr1:SNP:1692 C G 288 off_target DP=27;DP4=1,12,4,10;AD=13,14;TYPE=SNP;DBXREF=dbSNP:rs4951112,g1000:0.361621; 1 204124865 chr1:SNP:1693 C T 123 low_coverage;off_target DP=17;DP4=11,0,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs2368564,g1000:0.370407; 1 204125272 chr1:SNP:1694 C A 504 off_target DP=57;DP4=20,12,16,9;AD=32,25;TYPE=SNP;DBXREF=dbSNP:rs3795574,g1000:0.216054,esp5400:0.223926,ExAC:0.153; 1 204494576 chr1:SNP:1695 T C 735 off_target DP=53;DP4=13,6,20,14;AD=19,34;TYPE=SNP;DBXREF=dbSNP:rs4252675,g1000:0.0670927; 1 205739396 chr1:SNP:1696 T G 383 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs823139,g1000:0.721046; 1 205741816 chr1:SNP:1697 A T 696 off_target DP=27;DP4=0,1,2,24;AD=1,26;TYPE=SNP;DBXREF=dbSNP:rs823142,g1000:0.823882; 1 205744138 chr1:SNP:1698 G T 140 low_coverage;off_target DP=9;DP4=1,2,1,5;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs708725,g1000:0.178914; 1 205764640 chr1:SNP:1699 G A 664 off_target DP=28;DP4=1,1,5,21;AD=2,26;TYPE=SNP;DBXREF=dbSNP:rs823156,g1000:0.649161,esp5400:0.681167,ExAC:0.767; 1 205766159 chr1:INDEL:113 CAAA CAA 481 off_target DP=49;DP4=4,0,17,28;AD=4,45;TYPE=INDEL;DBXREF=dbSNP:rs5780304,g1000:0.723842,ExAC:0.826; 1 205767885 chr1:SNP:1700 G A 459 . DP=63;DP4=23,17,14,9;AD=40,23;TYPE=SNP;DBXREF=dbSNP:rs708727,g1000:0.141374,esp5400:0.292619,ExAC:0.295; 1 205768309 chr1:SNP:1701 C T 232 low_coverage;off_target DP=19;DP4=0,9,0,10;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs4396169,g1000:0.28774; 1 205779231 chr1:SNP:1702 G A 515 . DP=50;DP4=18,8,14,10;AD=26,24;TYPE=SNP;DBXREF=dbSNP:rs11240569,g1000:0.276558,esp5400:0.208496,ExAC:0.295; 1 205884274 chr1:SNP:1703 T C 633 . DP=77;DP4=18,26,17,16;AD=44,33;TYPE=SNP;DBXREF=dbSNP:rs6669481,g1000:0.154153,esp5400:0.203476,ExAC:0.105,MutationTaster:0; 1 205884646 chr1:INDEL:114 CTGTG C 102 low_variant_fraction;off_target DP=42;DP4=5,29,0,6;AD=34,6;TYPE=INDEL; 1 205890679 chr1:SNP:1704 T C 2040 off_target DP=77;DP4=0,0,45,32;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs12759719,g1000:0.914137,esp5400:0.90277,ExAC:0.912; 1 205896475 chr1:SNP:1705 C T 901 off_target DP=35;DP4=0,0,20,15;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs7366204,g1000:0.870607,esp5400:0.878169; 1 205896948 chr1:SNP:1706 A G 383 low_coverage;off_target DP=14;DP4=0,0,11,3;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs3811424,g1000:0.523562; 1 206516159 chr1:SNP:1707 C T 570 off_target DP=44;DP4=12,6,22,4;AD=18,26;TYPE=SNP;DBXREF=dbSNP:rs199928990; 1 206516261 chr1:SNP:1708 C T 741 . DP=75;DP4=19,19,19,16;AD=38,35;TYPE=SNP;DBXREF=dbSNP:rs201036189,MutationTaster:1; 1 206566903 chr1:SNP:1709 G A 115 low_variant_fraction DP=47;DP4=15,24,5,3;AD=39,8;TYPE=SNP;DBXREF=dbSNP:rs2987927,g1000:0.000599042,MutationTaster:1; 1 206566904 chr1:SNP:1710 T C 643 . DP=47;DP4=5,13,15,14;AD=18,29;TYPE=SNP;DBXREF=dbSNP:rs2919105,g1000:0.494409; 1 206567100 chr1:SNP:1711 C T 169 off_target DP=34;DP4=2,23,0,9;AD=25,9;TYPE=SNP;DBXREF=dbSNP:rs2480377; 1 206578650 chr1:SNP:1712 G C 400 . DP=63;DP4=24,17,17,5;AD=41,22;TYPE=SNP;DBXREF=dbSNP:rs782736135; 1 206579798 chr1:SNP:1713 T C 1051 . DP=108;DP4=20,35,26,27;AD=55,53;TYPE=SNP;DBXREF=dbSNP:rs200703951,MutationTaster:0.289; 1 206579936 chr1:SNP:1714 A G 1389 . DP=169;DP4=44,52,36,37;AD=96,73;TYPE=SNP;DBXREF=dbSNP:rs2772061,esp5400:0.37207; 1 206580084 chr1:SNP:1715 C G 686 off_target DP=44;DP4=1,13,4,26;AD=14,30;TYPE=SNP;DBXREF=dbSNP:rs2772060; 1 206603535 chr1:SNP:1716 G A 643 . DP=62;DP4=15,17,12,18;AD=32,30;TYPE=SNP;DBXREF=dbSNP:rs2297539,g1000:0.52496,esp5400:0.433511,ExAC:0.493,MutationTaster:0.289; 1 206623685 chr1:SNP:1717 G T 154 off_target DP=30;DP4=12,9,6,3;AD=21,9;TYPE=SNP;DBXREF=dbSNP:rs12725078,g1000:0.567093,esp5400:0.66057,ExAC:0.658; 1 206623866 chr1:SNP:1718 C T 166 low_coverage;off_target DP=18;DP4=2,8,1,7;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs11809494,g1000:0.367412,esp5400:0.473098; 1 206626607 chr1:SNP:1719 G A 658 . DP=57;DP4=12,15,15,15;AD=27,30;TYPE=SNP;DBXREF=dbSNP:rs11120575,g1000:0.346046,esp5400:0.429957,ExAC:0.437,MutationTaster:0.289; 1 206626779 chr1:SNP:1720 A G 125 low_coverage;off_target DP=16;DP4=1,9,1,5;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs2483059,g1000:0.672324; 1 206943351 chr1:SNP:1721 T C 611 off_target DP=23;DP4=0,0,0,23;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs3024494,g1000:0.976837; 1 206944233 chr1:SNP:1722 A G 191 off_target DP=21;DP4=9,3,9,0;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs1554286,g1000:0.591853,esp5400:0.748931,ExAC:0.717; 1 206944645 chr1:SNP:1723 T C 394 off_target DP=35;DP4=9,7,10,9;AD=16,19;TYPE=SNP;DBXREF=dbSNP:rs1518111,g1000:0.573083,esp5400:0.744589; 1 206944861 chr1:SNP:1724 A C 214 off_target DP=29;DP4=2,15,2,10;AD=17,12;TYPE=SNP;DBXREF=dbSNP:rs1518110,g1000:0.574281; 1 206972072 chr1:SNP:1725 C T 256 low_coverage;off_target DP=18;DP4=7,0,11,0;AD=7,11;TYPE=SNP;DBXREF=dbSNP:rs4845141,g1000:0.470248; 1 207009910 chr1:SNP:1726 T C 410 low_coverage;off_target DP=15;DP4=0,0,15,0;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2243170,g1000:0.823882; 1 207014472 chr1:SNP:1727 A C 551 off_target DP=69;DP4=15,26,12,16;AD=41,28;TYPE=SNP;DBXREF=dbSNP:rs2243188,g1000:0.613818,esp5400:0.71333,ExAC:0.689; 1 207015957 chr1:SNP:1728 T C 1169 . DP=120;DP4=25,36,30,29;AD=61,59;TYPE=SNP;DBXREF=dbSNP:rs2243191,g1000:0.672923,esp5400:0.796686,ExAC:0.674,MutationTaster:0; 1 207109116 chr1:SNP:1729 C T 451 . DP=35;DP4=3,12,6,14;AD=15,20;TYPE=SNP;DBXREF=dbSNP:rs2275531,g1000:0.296326,esp5400:0.373466,ExAC:0.379,MutationTaster:0.643; 1 207109167 chr1:SNP:1730 G A 277 low_coverage DP=16;DP4=1,3,1,11;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs6695632,g1000:0.286741,esp5400:0.356863,ExAC:0.372; 1 207110936 chr1:SNP:1731 T C 470 . DP=73;DP4=14,34,3,22;AD=48,25;TYPE=SNP;DBXREF=dbSNP:rs291096,g1000:0.550919,esp5400:0.600112,ExAC:0.474; 1 207113679 chr1:SNP:1732 T C 139 low_coverage;off_target DP=11;DP4=4,0,6,1;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs291091,g1000:0.550919; 1 207113755 chr1:SNP:1733 G C 275 off_target DP=26;DP4=7,6,8,5;AD=13,13;TYPE=SNP;DBXREF=dbSNP:rs2007272,g1000:0.289736,esp5400:0.388064; 1 207297484 chr1:SNP:1734 G C 245 off_target DP=24;DP4=9,3,7,5;AD=12,12;TYPE=SNP;DBXREF=dbSNP:rs2842707,g1000:0.525759,esp5400:0.447016,ExAC:0.451; 1 207297680 chr1:SNP:1735 T C 928 . DP=34;DP4=0,0,20,14;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1126618,g1000:0.857827,esp5400:0.860941,ExAC:0.854; 1 207304900 chr1:SNP:1736 T C 345 low_coverage DP=13;DP4=0,0,9,4;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4844573,g1000:0.489816,esp5400:0.485778,ExAC:0.396,MutationTaster:0; 1 207496029 chr1:INDEL:115 G GTA 290 off_target DP=40;DP4=0,25,0,14;AD=25,14;TYPE=INDEL;DBXREF=dbSNP:rs28371589,g1000:0.00299521; 1 207504669 chr1:SNP:1737 G A 1246 off_target DP=47;DP4=0,0,21,26;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs2184476,g1000:0.621406,esp5400:0.705521,ExAC:0.667; 1 207504748 chr1:SNP:1738 C A 412 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs1507757,g1000:0.621406; 1 207510289 chr1:SNP:1739 T C 478 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2490257,g1000:0.99401; 1 207510596 chr1:SNP:1740 G A 584 off_target DP=22;DP4=0,0,22,0;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs10746463,g1000:0.621605; 1 207512577 chr1:INDEL:116 T TTAA 1205 off_target DP=46;DP4=1,0,44,0;AD=1,44;TYPE=INDEL;DBXREF=dbSNP:rs10641442,g1000:0.99381; 1 207627693 chr1:SNP:1741 T C 770 off_target DP=29;DP4=0,0,18,11;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs3813946,g1000:0.130791,esp5400:0.159763; 1 207641840 chr1:SNP:1742 C T 246 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2063143,g1000:0.131989,esp5400:0.168898,ExAC:0.17; 1 207642295 chr1:SNP:1743 G A 819 off_target DP=30;DP4=0,0,5,25;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs1507764,g1000:0.161342,esp5400:0.194832,ExAC:0.176; 1 207646322 chr1:SNP:1744 G A 10000 . DP=161;DP4=0,0,83,78;AD=0,161;TYPE=SNP;DBXREF=dbSNP:rs1048971,g1000:0.400359,esp5400:0.468953,ExAC:0.35; 1 207646462 chr1:SNP:1745 G A 1670 . DP=63;DP4=0,0,19,44;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs17615,g1000:0.258387,esp5400:0.338074,ExAC:0.27,MutationTaster:0.834; 1 207646898 chr1:SNP:1746 T C 717 . DP=27;DP4=0,0,24,3;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs4308977,g1000:0.289537,esp5400:0.378509,ExAC:0.281,MutationTaster:0; 1 207646923 chr1:SNP:1747 G A 1273 . DP=48;DP4=0,0,36,12;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs17616,g1000:0.257588,esp5400:0.33733,ExAC:0.268,MutationTaster:0; 1 207653395 chr1:SNP:1748 C A 927 . DP=36;DP4=0,0,12,24;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs17617,g1000:0.942891,esp5400:0.878464,ExAC:0.884,MutationTaster:0.003; 1 207653444 chr1:SNP:1749 T A 628 off_target DP=23;DP4=0,0,4,19;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs17258996,g1000:0.125399,esp5400:0.164622,ExAC:0.167; 1 207679307 chr1:SNP:1750 A G 1061 . DP=40;DP4=0,0,20,20;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs4844600,g1000:0.850439,esp5400:0.848002,ExAC:0.822,MutationTaster:0; 1 207700348 chr1:SNP:1751 G A 1874 off_target DP=161;DP4=37,33,47,44;AD=70,91;TYPE=SNP;DBXREF=dbSNP:rs9429784,g1000:0.849641,esp5400:0.875587,ExAC:0.642; 1 207718903 chr1:SNP:1752 G A 1452 off_target DP=114;DP4=22,25,36,31;AD=47,67;TYPE=SNP;DBXREF=dbSNP:rs150543427; 1 207737459 chr1:SNP:1753 G A 880 off_target DP=135;DP4=46,42,24,23;AD=88,47;TYPE=SNP;DBXREF=dbSNP:rs71635146,g1000:0.473243,esp5400:0.339325,ExAC:0.3; 1 207739127 chr1:SNP:1754 A G 1544 off_target DP=60;DP4=0,0,41,19;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs3886100,g1000:0.391573,esp5400:0.511498; 1 207782916 chr1:SNP:1755 A T 10000 . DP=238;DP4=0,0,86,152;AD=0,238;TYPE=SNP;DBXREF=dbSNP:rs4844609,g1000:0.995008,esp5400:0.982329,ExAC:0.985,MutationTaster:0; 1 207795320 chr1:SNP:1756 A G 1538 . DP=58;DP4=0,0,34,24;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs2296160,g1000:0.828075,esp5400:0.817754,ExAC:0.808,MutationTaster:0; 1 207812791 chr1:SNP:1757 A G 241 off_target DP=42;DP4=11,18,7,6;AD=29,13;TYPE=SNP;DBXREF=dbSNP:rs41274776,g1000:0.119609,esp5400:0.052523,ExAC:0.079; 1 207934487 chr1:SNP:1758 A C 590 off_target DP=41;DP4=10,4,20,7;AD=14,27;TYPE=SNP;DBXREF=dbSNP:rs2466572,g1000:0.833466; 1 207934849 chr1:SNP:1759 A G 1365 off_target DP=115;DP4=28,23,36,28;AD=51,64;TYPE=SNP;DBXREF=dbSNP:rs4844390,g1000:0.116414; 1 207940853 chr1:SNP:1760 T A 164 low_coverage;off_target DP=19;DP4=9,2,7,1;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs11118555,g1000:0.0822684; 1 207941191 chr1:SNP:1761 G T 501 off_target DP=40;DP4=7,10,8,15;AD=17,23;TYPE=SNP;DBXREF=dbSNP:rs2724374,g1000:0.833067,esp5400:0.791705,ExAC:0.8; 1 207956559 chr1:SNP:1762 G A 541 off_target DP=21;DP4=0,0,11,10;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1962149,g1000:0.292732,esp5400:0.364916; 1 207959070 chr1:SNP:1763 T C 378 off_target DP=47;DP4=11,15,6,15;AD=26,21;TYPE=SNP;DBXREF=dbSNP:rs11118580,g1000:0.109425,esp5400:0.153124,ExAC:0.182; 1 207959134 chr1:SNP:1764 T A 186 low_coverage;off_target DP=12;DP4=2,2,0,8;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs76425939,g1000:0.298522; 1 207959135 chr1:SNP:1765 T A 258 low_coverage;off_target DP=14;DP4=1,2,0,11;AD=3,11;TYPE=SNP;DBXREF=dbSNP:rs55828915,g1000:0.847444; 1 207959136 chr1:SNP:1766 T A 171 low_coverage;off_target DP=10;DP4=1,1,0,7;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs56114948,g1000:0.935503; 1 209788514 chr1:SNP:1767 G A 195 low_coverage;off_target DP=17;DP4=8,0,9,0;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs2566,g1000:0.295128; 1 209788703 chr1:SNP:1768 T C 1220 . DP=135;DP4=43,33,33,26;AD=76,59;TYPE=SNP;DBXREF=dbSNP:rs1049607,g1000:0.463259,esp5400:0.441346,ExAC:0.401,clinvar:rs1049607|2; 1 209790707 chr1:SNP:1769 C G 527 off_target DP=35;DP4=10,3,19,3;AD=13,22;TYPE=SNP;DBXREF=dbSNP:rs41274828,g1000:0.0101837,esp5400:0.020636,ExAC:0.016; 1 209792015 chr1:INDEL:117 AC ACC 1168 off_target DP=50;DP4=1,1,6,42;AD=2,48;TYPE=INDEL;DBXREF=dbSNP:rs5780528,g1000:0.983626,ExAC:0.956,clinvar:rs397807887|2; 1 209796267 chr1:SNP:1770 G A 152 low_coverage;off_target DP=12;DP4=5,0,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs3737913,g1000:0.296725; 1 209799253 chr1:SNP:1771 A G 1052 . DP=113;DP4=19,42,22,30;AD=61,52;TYPE=SNP;DBXREF=dbSNP:rs2179402,g1000:0.764976,esp5400:0.743399,ExAC:0.754,clinvar:rs2179402|2; 1 209800976 chr1:SNP:1772 C T 270 off_target DP=32;DP4=3,16,0,13;AD=19,13;TYPE=SNP;DBXREF=dbSNP:rs2072938,g1000:0.086262,esp5400:0.113938,ExAC:0.129; 1 209801707 chr1:SNP:1773 T C 271 low_coverage;off_target DP=11;DP4=0,1,0,10;AD=1,10;TYPE=SNP;DBXREF=dbSNP:rs2076353,g1000:0.107827; 1 209804095 chr1:SNP:1774 G A 1008 off_target DP=38;DP4=0,0,12,26;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs4844863,g1000:0.823283,esp5400:0.841234,ExAC:0.847,clinvar:rs4844863|2; 1 209805895 chr1:SNP:1775 C G 358 off_target DP=26;DP4=5,5,12,4;AD=10,16;TYPE=SNP;DBXREF=dbSNP:rs2072940,g1000:0.0954473,esp5400:0.115478,ExAC:0.132,clinvar:rs2072940|2; 1 209807972 chr1:SNP:1776 G A 1276 . DP=109;DP4=18,31,21,39;AD=49,60;TYPE=SNP;DBXREF=dbSNP:rs1130667,g1000:0.245407,esp5400:0.311489,ExAC:0.344,clinvar:rs1130667|2; 1 209811886 chr1:SNP:1777 T G 1107 . DP=43;DP4=0,0,25,18;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs2076356,g1000:0.432508,esp5400:0.570924,ExAC:0.57,clinvar:rs2076356|2; 1 209812063 chr1:SNP:1778 T C 211 off_target DP=24;DP4=5,9,2,8;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs2076357,g1000:0.578874; 1 209880216 chr1:INDEL:118 CAA CAAA 431 off_target DP=46;DP4=2,2,27,12;AD=4,39;TYPE=INDEL;DBXREF=dbSNP:rs72215241,g1000:0.198083,ExAC:0.207,clinvar:rs45487298|0; 1 209880259 chr1:SNP:1779 T G 874 off_target DP=32;DP4=0,0,18,14;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs12086634,g1000:0.197085,esp5400:0.188046,ExAC:0.207; 1 209905734 chr1:SNP:1780 G C 1119 off_target DP=41;DP4=0,0,39,2;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs932335,g1000:0.210863,esp5400:0.203198,ExAC:0.212; 1 210111574 chr1:SNP:1781 C G 225 . DP=38;DP4=16,10,6,6;AD=26,12;TYPE=SNP;DBXREF=dbSNP:rs200959890,g1000:0.00159744,esp5400:0.00246,ExAC:0.003721; 1 210139069 chr1:SNP:1782 G A 130 low_coverage;off_target DP=16;DP4=10,0,5,1;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs10779518,g1000:0.732228; 1 210336584 chr1:INDEL:119 CTAAT C 1305 . DP=130;DP4=48,21,48,12;AD=69,60;TYPE=INDEL;DBXREF=dbSNP:rs141115626,g1000:0.251198,ExAC:0.163; 1 210337043 chr1:SNP:1783 A G 1350 . DP=178;DP4=41,66,33,37;AD=107,70;TYPE=SNP;DBXREF=dbSNP:rs4844954,g1000:0.857628,ExAC:0.796; 1 210337095 chr1:INDEL:120 TCA T 1590 . DP=201;DP4=49,72,29,48;AD=121,77;TYPE=INDEL;DBXREF=dbSNP:rs200454678,g1000:0.00119808,ExAC:0.002757; 1 213031948 chr1:SNP:1784 G C 538 . DP=22;DP4=2,0,20,0;AD=2,20;TYPE=SNP;DBXREF=dbSNP:rs11120047,g1000:0.444489,esp5400:0.393386,ExAC:0.372,clinvar:rs11120047|3,MutationTaster:0; 1 213056819 chr1:SNP:1785 A G 770 off_target DP=29;DP4=0,0,10,19;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs2644547,g1000:0.996206,esp5400:0.995905,ExAC:0.999; 1 213058401 chr1:SNP:1786 A T 258 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs7533932,g1000:0.730232; 1 213058852 chr1:SNP:1787 T A 506 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs7536716,g1000:0.445887; 1 213058911 chr1:SNP:1788 G T 175 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs7544562,g1000:0.447085; 1 213061308 chr1:SNP:1789 T C 328 . DP=45;DP4=13,14,7,11;AD=27,18;TYPE=SNP;DBXREF=dbSNP:rs17677416,g1000:0.0119808,esp5400:0.030117,ExAC:0.027,MutationTaster:1; 1 213062017 chr1:INDEL:121 T TTTG 220 low_coverage;off_target DP=14;DP4=3,2,1,8;AD=5,9;TYPE=INDEL;DBXREF=dbSNP:rs112024320; 1 213068096 chr1:SNP:1790 T C 206 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs12405293,g1000:0.379393; 1 213068192 chr1:SNP:1791 T C 372 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2792558,g1000:0.930911; 1 213068233 chr1:SNP:1792 C T 1360 off_target DP=53;DP4=1,1,42,9;AD=2,51;TYPE=SNP;DBXREF=dbSNP:rs12408694,g1000:0.663538; 1 213068595 chr1:SNP:1793 C T 1352 . DP=51;DP4=0,0,19,32;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs3207090,g1000:0.379393,esp5400:0.381577,ExAC:0.449,clinvar:rs3207090|3,MutationTaster:0; 1 214542668 chr1:SNP:1794 T C 380 off_target DP=31;DP4=14,0,17,0;AD=14,17;TYPE=SNP;DBXREF=dbSNP:rs3002311,g1000:0.784145; 1 214542819 chr1:SNP:1795 T C 763 . DP=67;DP4=17,13,18,19;AD=30,37;TYPE=SNP;DBXREF=dbSNP:rs1135352,g1000:0.783946,esp5400:0.827105,ExAC:0.769; 1 214551276 chr1:SNP:1796 G A 127 low_coverage;off_target DP=15;DP4=8,1,3,3;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs3013451,g1000:0.786542,esp5400:0.832125,ExAC:0.775; 1 214560293 chr1:SNP:1797 G T 373 off_target DP=38;DP4=9,11,11,7;AD=20,18;TYPE=SNP;DBXREF=dbSNP:rs2270703,g1000:0.0848642,esp5400:0.047787,ExAC:0.062; 1 214564340 chr1:SNP:1798 T C 302 . DP=21;DP4=7,1,9,4;AD=8,13;TYPE=SNP;DBXREF=dbSNP:rs7550799,g1000:0.786342,esp5400:0.839747,ExAC:0.772; 1 214564442 chr1:SNP:1799 C G 286 off_target DP=20;DP4=4,3,5,8;AD=7,13;TYPE=SNP;DBXREF=dbSNP:rs11120307,g1000:0.466254,esp5400:0.394867; 1 214566952 chr1:SNP:1800 A G 102 low_coverage;off_target DP=11;DP4=5,1,5,0;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs4655342,g1000:0.785942; 1 214576354 chr1:SNP:1801 T C 671 off_target DP=82;DP4=17,31,9,25;AD=48,34;TYPE=SNP;DBXREF=dbSNP:rs55788513,g1000:0.0249601,esp5400:0.05906; 1 214625431 chr1:SNP:1802 A G 267 off_target DP=29;DP4=0,16,1,12;AD=16,13;TYPE=SNP;DBXREF=dbSNP:rs7355177,g1000:0.303714; 1 214637882 chr1:SNP:1803 A G 824 off_target DP=32;DP4=0,0,30,2;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs7528315,g1000:0.826078; 1 214638172 chr1:SNP:1804 C T 1591 off_target DP=60;DP4=0,0,12,48;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs10864100,g1000:0.826078,esp5400:0.836154,ExAC:0.805; 1 214638319 chr1:SNP:1805 T C 319 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs10864101,g1000:0.826278; 1 214638347 chr1:SNP:1806 A G 273 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs10864102,g1000:0.826478; 1 215848587 chr1:SNP:1807 T C 1067 . DP=117;DP4=42,22,41,12;AD=64,53;TYPE=SNP;DBXREF=dbSNP:rs2797234,g1000:0.303115,esp5400:0.332218,ExAC:0.364,clinvar:rs2797234|2; 1 215848641 chr1:SNP:1808 T C 10000 . DP=146;DP4=1,1,67,74;AD=2,141;TYPE=SNP;DBXREF=dbSNP:rs2797235,g1000:0.689696,esp5400:0.750139,ExAC:0.765,clinvar:rs2797235|2; 1 215853835 chr1:SNP:1809 A G 137 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs12140451,g1000:0.254992; 1 215914646 chr1:SNP:1810 T A 228 off_target DP=24;DP4=12,1,7,4;AD=13,11;TYPE=SNP;DBXREF=dbSNP:rs6694510,g1000:0.277955; 1 215914826 chr1:SNP:1811 T C 761 . DP=68;DP4=16,16,22,14;AD=32,36;TYPE=SNP;DBXREF=dbSNP:rs35309576,g1000:0.159345,esp5400:0.217977,ExAC:0.196,clinvar:rs35309576|2,MutationTaster:0; 1 215915068 chr1:SNP:1812 C T 157 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs192054233,g1000:0.000199681; 1 215916563 chr1:SNP:1813 G A 453 . DP=66;DP4=25,18,11,12;AD=43,23;TYPE=SNP;DBXREF=dbSNP:rs11120616,g1000:0.144569,esp5400:0.20264,ExAC:0.192,clinvar:rs11120616|2,MutationTaster:1; 1 215916730 chr1:SNP:1814 G A 165 low_coverage;off_target DP=9;DP4=0,2,0,7;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs6540907; 1 215955732 chr1:INDEL:122 TAA TAAAA 130 low_coverage;off_target DP=10;DP4=0,3,1,6;AD=3,7;TYPE=INDEL;DBXREF=dbSNP:rs35071811,g1000:0.352835; 1 215955937 chr1:SNP:1815 T G 504 low_coverage;off_target DP=19;DP4=0,0,19,0;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs6665799,g1000:0.353634; 1 215960167 chr1:SNP:1816 T G 1398 . DP=56;DP4=0,1,17,38;AD=1,55;TYPE=SNP;DBXREF=dbSNP:rs10864198,g1000:0.588658,esp5400:0.573155,ExAC:0.547,clinvar:rs10864198|2,MutationTaster:1; 1 216219781 chr1:SNP:1817 A G 767 . DP=75;DP4=25,13,20,17;AD=38,37;TYPE=SNP;DBXREF=dbSNP:rs6657250,g1000:0.595647,esp5400:0.698271,ExAC:0.606,clinvar:rs6657250|2,MutationTaster:0.601; 1 216246675 chr1:INDEL:123 AGGG AGG 183 off_target DP=21;DP4=0,3,1,17;AD=3,18;TYPE=INDEL;DBXREF=dbSNP:rs35944387,g1000:0.78734,ExAC:0.725; 1 216258213 chr1:SNP:1818 A G 2995 . DP=115;DP4=0,1,51,63;AD=1,114;TYPE=SNP;DBXREF=dbSNP:rs56222536,g1000:0.0626997,esp5400:0.111586,ExAC:0.11,clinvar:rs56222536|2,MutationTaster:0.105; 1 216270618 chr1:SNP:1819 G A 2531 off_target DP=99;DP4=0,2,18,79;AD=2,97;TYPE=SNP;DBXREF=dbSNP:rs7540411,g1000:0.0922524; 1 216462662 chr1:SNP:1820 T A 10000 . DP=139;DP4=1,2,63,73;AD=3,136;TYPE=SNP;DBXREF=dbSNP:rs1805048,g1000:0.0345447,esp5400:0.059491,ExAC:0.058,clinvar:rs1805048|2|1,MutationTaster:1; 1 216497469 chr1:INDEL:124 CCAAT C 788 off_target DP=31;DP4=1,0,29,0;AD=1,29;TYPE=INDEL;DBXREF=dbSNP:rs145313346,ExAC:0.042; 1 216500830 chr1:SNP:1821 G C 656 off_target DP=24;DP4=0,0,24,0;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs1339963,g1000:0.359026; 1 216538507 chr1:SNP:1822 A G 1467 off_target DP=57;DP4=0,1,6,50;AD=1,56;TYPE=SNP;DBXREF=dbSNP:rs45594833,g1000:0.0369409; 1 216692477 chr1:SNP:1823 T C 120 low_coverage;off_target DP=7;DP4=2,0,4,1;AD=2,5;TYPE=SNP;DBXREF=dbSNP:rs11572818,g1000:0.0177716,esp5400:0.039505,ExAC:0.037; 1 216824505 chr1:SNP:1824 C G 231 low_coverage;off_target DP=15;DP4=2,3,3,7;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs10863261,g1000:0.133586; 1 218578726 chr1:INDEL:125 ACT A 111 low_variant_fraction;off_target DP=60;DP4=6,42,1,6;AD=48,7;TYPE=INDEL;DBXREF=dbSNP:rs142802402; 1 220330672 chr1:SNP:1825 C T 236 . DP=39;DP4=12,14,7,6;AD=26,13;TYPE=SNP;DBXREF=dbSNP:rs11547779,g1000:0.0605032,esp5400:0.068693,ExAC:0.088,clinvar:rs11547779|255; 1 220331205 chr1:SNP:1826 C G 446 . DP=40;DP4=5,14,9,12;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs2289189,g1000:0.0603035,esp5400:0.068693,ExAC:0.087,clinvar:rs2289189|255,MutationTaster:1; 1 220331298 chr1:SNP:1827 C G 120 low_coverage;off_target DP=14;DP4=0,8,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs3767655,g1000:0.0605032; 1 220332876 chr1:SNP:1828 G A 584 off_target DP=22;DP4=0,0,0,22;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2808026,g1000:0.552716; 1 220335430 chr1:SNP:1829 A G 314 off_target DP=31;DP4=15,1,15,0;AD=16,15;TYPE=SNP;DBXREF=dbSNP:rs2164790,g1000:0.298123; 1 220366497 chr1:SNP:1830 T A 254 off_target DP=24;DP4=12,0,12,0;AD=12,12;TYPE=SNP;DBXREF=dbSNP:rs78010602,g1000:0.0537141; 1 220375460 chr1:SNP:1831 T C 242 off_target DP=22;DP4=11,0,11,0;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs149591659,g1000:0.0609026; 1 220406291 chr1:SNP:1832 A G 412 low_coverage;off_target DP=18;DP4=0,0,2,15;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs10863538,g1000:0.500799; 1 220445488 chr1:SNP:1833 C T 104 low_coverage;off_target DP=12;DP4=7,0,5,0;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs2292418,g1000:0.0613019; 1 222798106 chr1:SNP:1834 G A 1030 . DP=40;DP4=0,0,16,24;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs3008617,g1000:0.998403,esp5400:0.996337,ExAC:0.999; 1 222802006 chr1:SNP:1835 A G 1555 . DP=57;DP4=0,0,22,35;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs2936053,g1000:0.995607,esp5400:0.992922,ExAC:0.998,MutationTaster:0; 1 222802803 chr1:SNP:1836 T G 1538 . DP=58;DP4=0,0,27,31;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs3748626,g1000:0.507388,esp5400:0.585448,ExAC:0.633,MutationTaster:0; 1 222802926 chr1:SNP:1837 C T 2180 . DP=80;DP4=0,0,41,39;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs3008620,g1000:0.800519,esp5400:0.79913,ExAC:0.868,MutationTaster:0; 1 222823529 chr1:SNP:1838 A C 253 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs17465637,g1000:0.503794,ExAC:0.535; 1 222823743 chr1:SNP:1839 T G 702 off_target DP=28;DP4=0,1,9,18;AD=1,27;TYPE=SNP;DBXREF=dbSNP:rs67180937,g1000:0.493011,esp5400:0.596471,ExAC:0.615; 1 222825403 chr1:SNP:1840 G A 1473 off_target DP=54;DP4=0,0,21,33;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs3002150,g1000:0.932508,esp5400:0.958686,ExAC:0.953; 1 222825717 chr1:SNP:1841 T C 681 off_target DP=28;DP4=0,0,7,20;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs10495198,g1000:0.503794,esp5400:0.580832,ExAC:0.636; 1 222825761 chr1:SNP:1842 G A 372 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2936019,g1000:0.932508; 1 222826481 chr1:SNP:1843 G A 2875 . DP=109;DP4=0,2,34,73;AD=2,107;TYPE=SNP;DBXREF=dbSNP:rs2291832,g1000:0.484824,esp5400:0.575324,ExAC:0.633; 1 222826847 chr1:SNP:1844 A T 133 low_coverage;off_target DP=5;DP4=0,0,0,5;AD=0,5;TYPE=SNP;DBXREF=dbSNP:rs2291833,g1000:0.779752; 1 222833538 chr1:SNP:1845 C G 376 . DP=37;DP4=8,10,9,9;AD=18,18;TYPE=SNP;DBXREF=dbSNP:rs2291835,g1000:0.126797,esp5400:0.157517,ExAC:0.154; 1 222833601 chr1:SNP:1846 T C 1485 . DP=56;DP4=0,0,23,33;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs3002153,g1000:0.995008,esp5400:0.992409,ExAC:0.998; 1 222837594 chr1:SNP:1847 G A 928 off_target DP=34;DP4=0,0,1,33;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2270707,g1000:0.652955; 1 223156382 chr1:SNP:1848 C T 601 off_target DP=22;DP4=0,0,22,0;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2926159,g1000:0.9998,esp5400:0.999814,ExAC:1; 1 223156653 chr1:SNP:1849 C T 493 low_coverage;off_target DP=19;DP4=0,1,0,18;AD=1,18;TYPE=SNP;DBXREF=dbSNP:rs4388710,g1000:0.319888; 1 223178561 chr1:SNP:1850 A C 258 low_coverage DP=10;DP4=0,0,3,7;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs9441941,g1000:0.498003,esp5400:0.539691,ExAC:0.544,clinvar:rs9441941|2; 1 223283851 chr1:SNP:1851 T C 246 . DP=39;DP4=18,8,6,7;AD=26,13;TYPE=SNP;DBXREF=dbSNP:rs1053954,g1000:0.0357428,esp5400:0.073713,ExAC:0.072; 1 223283910 chr1:SNP:1852 A G 1446 . DP=53;DP4=0,0,28,25;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs7512943,g1000:1,ExAC:1,MutationTaster:0; 1 223284599 chr1:SNP:1853 T C 1870 . DP=199;DP4=66,43,47,43;AD=109,90;TYPE=SNP;DBXREF=dbSNP:rs2072493,g1000:0.140176,esp5400:0.114705,ExAC:0.149,clinvar:rs2072493|255,MutationTaster:0; 1 225603103 chr1:SNP:1854 C T 438 low_coverage;off_target DP=17;DP4=0,0,3,14;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6702433,g1000:0.711861,esp5400:0.743647; 1 225607144 chr1:SNP:1855 C T 425 low_coverage DP=16;DP4=0,0,5,11;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2230419,g1000:0.71226,esp5400:0.704034,ExAC:0.799,clinvar:rs2230419|2,MutationTaster:0; 1 225609884 chr1:SNP:1856 A G 593 . DP=23;DP4=0,0,13,10;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs1056608,g1000:0.670927,esp5400:0.659509,ExAC:0.75,clinvar:rs1056608|2; 1 225611661 chr1:SNP:1857 C T 498 . DP=38;DP4=12,4,16,6;AD=16,22;TYPE=SNP;DBXREF=dbSNP:rs1056607,g1000:0.657149,esp5400:0.697249,ExAC:0.711,clinvar:rs1056607|2; 1 226016381 chr1:SNP:1858 G A 338 off_target DP=28;DP4=11,1,13,3;AD=12,16;TYPE=SNP;DBXREF=dbSNP:rs41266229,g1000:0.228634,esp5400:0.278678,ExAC:0.267; 1 226016397 chr1:SNP:1859 G A 415 off_target DP=33;DP4=9,5,14,5;AD=14,19;TYPE=SNP;DBXREF=dbSNP:rs41266231,g1000:0.246206,esp5400:0.293438,ExAC:0.272; 1 226019633 chr1:SNP:1860 T C 221 . DP=40;DP4=14,14,5,7;AD=28,12;TYPE=SNP;DBXREF=dbSNP:rs1051740,g1000:0.313299,esp5400:0.256553,ExAC:0.313,clinvar:rs1051740|255|255|255|255|6,MutationTaster:1; 1 226019774 chr1:SNP:1861 G C 198 low_coverage;off_target DP=12;DP4=1,3,0,8;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs2260863,g1000:0.74361; 1 226026406 chr1:SNP:1862 A G 747 . DP=64;DP4=20,8,26,10;AD=28,36;TYPE=SNP;DBXREF=dbSNP:rs2234922,g1000:0.215455,esp5400:0.247816,ExAC:0.196,clinvar:rs2234922|2|6,MutationTaster:0; 1 226032229 chr1:SNP:1863 C T 309 . DP=51;DP4=21,14,7,9;AD=35,16;TYPE=SNP;DBXREF=dbSNP:rs1051741,g1000:0.126398,esp5400:0.108384,ExAC:0.112; 1 226125543 chr1:INDEL:126 GA GAA 776 off_target DP=37;DP4=0,1,11,22;AD=1,33;TYPE=INDEL;DBXREF=dbSNP:rs60825997,g1000:1,ExAC:1; 1 226127443 chr1:SNP:1864 G C 1249 off_target DP=136;DP4=36,38,39,23;AD=74,62;TYPE=SNP;DBXREF=dbSNP:rs74578461,g1000:0.291733,esp5400:0.256545,ExAC:0.285,clinvar:rs74578461|2; 1 226549498 chr1:SNP:1865 G A 247 low_coverage;off_target DP=12;DP4=2,0,7,3;AD=2,10;TYPE=SNP;DBXREF=dbSNP:rs2271347,g1000:0.142372; 1 226550924 chr1:SNP:1866 G C 743 off_target DP=28;DP4=0,0,11,17;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs747657,g1000:0.486621,esp5400:0.620903; 1 226553485 chr1:SNP:1867 A C 137 low_coverage;off_target DP=7;DP4=1,0,6,0;AD=1,6;TYPE=SNP;DBXREF=dbSNP:rs118165556,g1000:0.540136; 1 226553486 chr1:SNP:1868 C A 229 low_coverage;off_target DP=10;DP4=1,0,9,0;AD=1,9;TYPE=SNP;DBXREF=dbSNP:rs146042055,g1000:0.761981; 1 226553490 chr1:SNP:1869 C A 273 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs34917861,g1000:0.783746; 1 226556094 chr1:SNP:1870 T C 601 off_target DP=22;DP4=0,0,0,22;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs1805400,g1000:0.986422; 1 226570840 chr1:SNP:1871 T C 531 . DP=20;DP4=0,0,8,12;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1805415,g1000:0.789337,esp5400:0.860011,ExAC:0.794; 1 226578099 chr1:SNP:1872 T C 643 off_target DP=53;DP4=23,1,23,6;AD=24,29;TYPE=SNP;DBXREF=dbSNP:rs1805403,g1000:0.857628,esp5400:0.820692,ExAC:0.806; 1 227069677 chr1:SNP:1873 T C 1691 . DP=62;DP4=0,0,25,37;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs11405,g1000:0.735623,esp5400:0.792062,ExAC:0.76,clinvar:rs11405|2; 1 227069737 chr1:SNP:1874 C T 256 . DP=27;DP4=4,11,4,8;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs6759,g1000:0.443291,esp5400:0.488288,ExAC:0.498,clinvar:rs6759|2; 1 227071364 chr1:SNP:1875 G A 282 off_target DP=27;DP4=13,1,13,0;AD=14,13;TYPE=SNP;DBXREF=dbSNP:rs1295643,g1000:0.443291,esp5400:0.486693,ExAC:0.482; 1 227071377 chr1:SNP:1876 T C 1004 off_target DP=39;DP4=0,0,38,1;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs1295644,g1000:0.624401,esp5400:0.709279,ExAC:0.709; 1 227071525 chr1:SNP:1877 C T 1075 . DP=146;DP4=34,56,22,34;AD=90,56;TYPE=SNP;DBXREF=dbSNP:rs1046240,g1000:0.443291,esp5400:0.488938,ExAC:0.499,clinvar:rs1046240|2; 1 227073410 chr1:SNP:1878 G C 553 off_target DP=23;DP4=0,1,6,16;AD=1,22;TYPE=SNP;DBXREF=dbSNP:rs2236910,g1000:0.735623,esp5400:0.791969,ExAC:0.759; 1 227078955 chr1:SNP:1879 T C 1908 off_target DP=72;DP4=0,0,45,27;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs2802267,g1000:0.722843,esp5400:0.7791,ExAC:0.755; 1 227081850 chr1:SNP:1880 G A 367 off_target DP=35;DP4=8,9,5,13;AD=17,18;TYPE=SNP;DBXREF=dbSNP:rs2855562,g1000:0.574081,esp5400:0.536717,ExAC:0.572; 1 227170298 chr1:SNP:1881 A G 414 off_target DP=42;DP4=17,5,14,6;AD=22,20;TYPE=SNP;DBXREF=dbSNP:rs2297412,g1000:0.35603; 1 227170543 chr1:SNP:1882 C G 827 off_target DP=65;DP4=11,16,21,17;AD=27,38;TYPE=SNP;DBXREF=dbSNP:rs2297413,g1000:0.198283,esp5400:0.194154; 1 227171210 chr1:SNP:1883 G A 150 low_coverage;off_target DP=17;DP4=7,2,5,3;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs12739480,g1000:0.0870607,esp5400:0.104202,ExAC:0.128; 1 227171584 chr1:INDEL:127 GTTT GTT 106 off_target DP=57;DP4=16,20,11,10;AD=36,21;TYPE=INDEL;DBXREF=dbSNP:rs3215919,g1000:0.262181,ExAC:0.34; 1 227171737 chr1:SNP:1884 G T 239 off_target DP=30;DP4=13,0,12,0;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs1574184,g1000:0.28115; 1 227171739 chr1:SNP:1885 G T 249 off_target DP=30;DP4=14,0,12,0;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs1574185,g1000:0.280152; 1 227172290 chr1:SNP:1886 C T 1481 . DP=146;DP4=44,30,47,25;AD=74,72;TYPE=SNP;DBXREF=dbSNP:rs12593,g1000:0.238618,esp5400:0.369307,ExAC:0.352,clinvar:rs12593|3; 1 227172903 chr1:SNP:1887 G A 249 off_target DP=26;DP4=12,2,12,0;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs2297415,g1000:0.269569,esp5400:0.410614; 1 227172935 chr1:SNP:1888 C G 431 off_target DP=56;DP4=24,10,17,5;AD=34,22;TYPE=SNP;DBXREF=dbSNP:rs2297416,g1000:0.265176,esp5400:0.393568,ExAC:0.362; 1 227174145 chr1:SNP:1889 T C 337 . DP=24;DP4=9,0,11,4;AD=9,15;TYPE=SNP;DBXREF=dbSNP:rs7552783,g1000:0.351637,esp5400:0.469139,ExAC:0.414; 1 227174210 chr1:SNP:1890 T C 889 . DP=77;DP4=24,10,29,14;AD=34,43;TYPE=SNP;DBXREF=dbSNP:rs3738725,g1000:0.313898,esp5400:0.436512,ExAC:0.405,clinvar:rs3738725|3; 1 228399482 chr1:SNP:1891 C G 234 . DP=25;DP4=14,0,11,0;AD=14,11;TYPE=SNP;DBXREF=dbSNP:rs11804508,g1000:0.721046,esp5400:0.630302,ExAC:0.624; 1 228399766 chr1:SNP:1892 T C 1075 . DP=100;DP4=26,24,21,29;AD=50,50;TYPE=SNP;DBXREF=dbSNP:rs55971985,g1000:0.726238,esp5400:0.643911,ExAC:0.55; 1 228399799 chr1:SNP:1893 C T 796 . DP=83;DP4=16,28,20,19;AD=44,39;TYPE=SNP;DBXREF=dbSNP:rs11582369,g1000:0.0507188,esp5400:0.030942,ExAC:0.023; 1 228402047 chr1:SNP:1894 A G 458 . DP=55;DP4=8,23,9,14;AD=31,23;TYPE=SNP;DBXREF=dbSNP:rs1620111,g1000:0.719848,esp5400:0.634002,ExAC:0.653; 1 228402121 chr1:SNP:1895 A G 265 . DP=30;DP4=2,15,4,9;AD=17,13;TYPE=SNP;DBXREF=dbSNP:rs1771487,g1000:0.719649,esp5400:0.627567,ExAC:0.652,MutationTaster:1; 1 228402508 chr1:SNP:1896 C T 277 . DP=31;DP4=15,2,12,2;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs2776853,g1000:0.275759,esp5400:0.370465,ExAC:0.343; 1 228404198 chr1:SNP:1897 G A 1178 . DP=98;DP4=24,19,27,28;AD=43,55;TYPE=SNP;DBXREF=dbSNP:rs61501937,g1000:0.0535144,esp5400:0.033605,ExAC:0.03; 1 228404668 chr1:SNP:1898 T C 217 off_target DP=25;DP4=14,0,10,1;AD=14,11;TYPE=SNP;DBXREF=dbSNP:rs3795777,g1000:0.336462,esp5400:0.39234,ExAC:0.358; 1 228412106 chr1:SNP:1899 T C 264 off_target DP=21;DP4=9,0,12,0;AD=9,12;TYPE=SNP;DBXREF=dbSNP:rs1771482,g1000:0.412141; 1 228412227 chr1:SNP:1900 T C 758 . DP=119;DP4=50,27,25,17;AD=77,42;TYPE=SNP;DBXREF=dbSNP:rs1771480,g1000:0.41254,esp5400:0.449942,ExAC:0.399; 1 228412228 chr1:SNP:1901 G A 459 . DP=112;DP4=51,34,12,15;AD=85,27;TYPE=SNP;DBXREF=dbSNP:rs1757153,g1000:0.284145,esp5400:0.372044,ExAC:0.346,MutationTaster:1; 1 228412308 chr1:SNP:1902 G A 1562 . DP=194;DP4=58,56,34,46;AD=114,80;TYPE=SNP;DBXREF=dbSNP:rs1757152,g1000:0.41254,esp5400:0.445738,ExAC:0.401; 1 228431095 chr1:SNP:1903 A G 2285 . DP=88;DP4=0,1,26,61;AD=1,87;TYPE=SNP;DBXREF=dbSNP:rs1771455,g1000:0.616613,esp5400:0.6994,ExAC:0.649; 1 228431930 chr1:SNP:1904 C T 372 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs10916293,g1000:0.616813; 1 228433217 chr1:SNP:1905 A G 10000 . DP=155;DP4=0,0,85,70;AD=0,155;TYPE=SNP;DBXREF=dbSNP:rs2487384,g1000:0.616613,esp5400:0.697356,ExAC:0.65; 1 228434395 chr1:SNP:1906 T C 10000 . DP=148;DP4=0,0,73,75;AD=0,148;TYPE=SNP;DBXREF=dbSNP:rs7517088,g1000:0.617612,esp5400:0.697389,ExAC:0.649; 1 228434467 chr1:SNP:1907 T C 1352 . DP=51;DP4=0,0,15,36;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs7517108,g1000:0.66254,esp5400:0.728679,ExAC:0.668; 1 228437603 chr1:SNP:1908 T C 491 off_target DP=20;DP4=1,0,16,3;AD=1,19;TYPE=SNP;DBXREF=dbSNP:rs6426494,g1000:0.663738; 1 228438045 chr1:SNP:1909 G A 184 low_coverage;off_target DP=11;DP4=0,3,0,8;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs12737540,g1000:0.251997; 1 228444318 chr1:SNP:1910 T G 1757 off_target DP=68;DP4=1,0,48,19;AD=1,67;TYPE=SNP;DBXREF=dbSNP:rs7532144,g1000:0.617013,esp5400:0.698269,ExAC:0.649; 1 228444565 chr1:SNP:1911 T A 3233 . DP=124;DP4=0,0,16,107;AD=0,123;TYPE=SNP;DBXREF=dbSNP:rs7532342,g1000:1,ExAC:1,MutationTaster:1; 1 228444741 chr1:SNP:1912 C T 319 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs3795780,g1000:0.617013; 1 228451826 chr1:SNP:1913 C T 1019 . DP=106;DP4=32,24,41,9;AD=56,50;TYPE=SNP;DBXREF=dbSNP:rs453140,g1000:0.30631,esp5400:0.265337,ExAC:0.293,MutationTaster:0; 1 228456147 chr1:SNP:1914 T C 593 off_target DP=23;DP4=0,0,16,7;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs878388,g1000:0.671126,ExAC:0.662; 1 228461129 chr1:SNP:1915 A G 10000 off_target DP=162;DP4=1,1,71,89;AD=2,160;TYPE=SNP;DBXREF=dbSNP:rs1188724,g1000:0.69349,esp5400:0.735237,ExAC:0.689,MutationTaster:0; 1 228461408 chr1:INDEL:128 AGGG AGGGG 519 off_target DP=56;DP4=1,3,43,7;AD=4,50;TYPE=INDEL;DBXREF=dbSNP:rs11398292; 1 228461757 chr1:SNP:1916 G A 300 . DP=42;DP4=8,19,1,14;AD=27,15;TYPE=SNP;DBXREF=dbSNP:rs474735,g1000:0.206669,esp5400:0.216608,ExAC:0.194; 1 228463433 chr1:SNP:1917 C T 195 low_coverage;off_target DP=15;DP4=6,0,8,1;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs510931,g1000:0.258786,esp5400:0.234577,ExAC:0.147; 1 228464248 chr1:SNP:1918 T G 3190 . DP=119;DP4=1,0,55,63;AD=1,118;TYPE=SNP;DBXREF=dbSNP:rs1188721,g1000:0.695487,esp5400:0.738626,ExAC:0.689,MutationTaster:1; 1 228464276 chr1:SNP:1919 T C 2875 . DP=109;DP4=1,0,45,62;AD=1,107;TYPE=SNP;DBXREF=dbSNP:rs1188722,g1000:0.663538,esp5400:0.7069,ExAC:0.679,MutationTaster:1; 1 228464842 chr1:SNP:1920 C G 1091 off_target DP=44;DP4=1,0,20,23;AD=1,43;TYPE=SNP;DBXREF=dbSNP:rs936885,g1000:0.69369,esp5400:0.738912,ExAC:0.642; 1 228465370 chr1:SNP:1921 T G 531 off_target DP=20;DP4=0,0,17,3;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs867599,g1000:0.669529,ExAC:0.675; 1 228466750 chr1:SNP:1922 T C 102 low_coverage;off_target DP=13;DP4=5,3,2,3;AD=8,5;TYPE=SNP;DBXREF=dbSNP:rs3795782,g1000:0.240615; 1 228466862 chr1:SNP:1923 C T 155 off_target DP=20;DP4=9,3,8,0;AD=12,8;TYPE=SNP;DBXREF=dbSNP:rs3820627,g1000:0.0421326,esp5400:0.028008,ExAC:0.039; 1 228468458 chr1:SNP:1924 G A 512 . DP=56;DP4=9,21,3,23;AD=30,26;TYPE=SNP;DBXREF=dbSNP:rs1188697,g1000:0.31889,esp5400:0.296417,ExAC:0.293,MutationTaster:1; 1 228468566 chr1:SNP:1925 A G 255 low_coverage;off_target DP=12;DP4=0,2,0,10;AD=2,10;TYPE=SNP;DBXREF=dbSNP:rs4653934,g1000:0.239816; 1 228470995 chr1:SNP:1926 G T 414 . DP=42;DP4=1,21,3,17;AD=22,20;TYPE=SNP;DBXREF=dbSNP:rs1150906,g1000:0.318091,esp5400:0.305583,ExAC:0.224; 1 228471379 chr1:SNP:1927 G C 1259 . DP=132;DP4=31,39,26,36;AD=70,62;TYPE=SNP;DBXREF=dbSNP:rs56168609,g1000:0.230232,esp5400:0.32436,ExAC:0.32; 1 228475848 chr1:SNP:1928 G A 783 . DP=88;DP4=24,25,17,22;AD=49,39;TYPE=SNP;DBXREF=dbSNP:rs437129,g1000:0.302716,esp5400:0.302389,ExAC:0.292,MutationTaster:0.004; 1 228480282 chr1:SNP:1929 A G 2126 . DP=82;DP4=1,0,49,32;AD=1,81;TYPE=SNP;DBXREF=dbSNP:rs1150908,g1000:0.698882,esp5400:0.745913,ExAC:0.694; 1 228482010 chr1:SNP:1930 C T 1361 . DP=125;DP4=28,28,34,33;AD=56,67;TYPE=SNP;DBXREF=dbSNP:rs449133,g1000:0.381989,esp5400:0.466066,ExAC:0.435; 1 228482028 chr1:SNP:1931 G C 867 . DP=112;DP4=34,32,20,26;AD=66,46;TYPE=SNP;DBXREF=dbSNP:rs4653547,g1000:0.21246,esp5400:0.218856,ExAC:0.203; 1 228494357 chr1:SNP:1932 C T 158 off_target DP=22;DP4=2,12,0,8;AD=14,8;TYPE=SNP;DBXREF=dbSNP:rs3795795,g1000:0.166733,esp5400:0.185217,ExAC:0.178; 1 228494382 chr1:SNP:1933 T C 264 low_coverage;off_target DP=18;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1150911,g1000:0.321486,ExAC:0.251; 1 228494382 chr1:SNP:1934 T G 141 low_coverage;off_target DP=18;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs1150911,g1000:0.383387,esp5400:0.647214,ExAC:0.427; 1 228494438 chr1:SNP:1935 C T 162 low_coverage;off_target DP=12;DP4=0,5,2,5;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs3795797,g1000:0.213259; 1 228494696 chr1:SNP:1936 G A 1236 . DP=100;DP4=24,17,28,31;AD=41,59;TYPE=SNP;DBXREF=dbSNP:rs4653939,g1000:0.308506,esp5400:0.257272,ExAC:0.252; 1 228494790 chr1:SNP:1937 G A 1500 . DP=159;DP4=42,45,33,39;AD=87,72;TYPE=SNP;DBXREF=dbSNP:rs435776,g1000:0.26857,esp5400:0.363297,ExAC:0.406,MutationTaster:0; 1 228495696 chr1:SNP:1938 T C 212 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs419173,g1000:0.700479; 1 228496014 chr1:SNP:1939 G A 702 . DP=89;DP4=22,30,10,27;AD=52,37;TYPE=SNP;DBXREF=dbSNP:rs876180,g1000:0.213059,esp5400:0.227125,ExAC:0.203; 1 228497053 chr1:SNP:1940 A G 425 low_coverage;off_target DP=16;DP4=0,0,7,9;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs379620,g1000:0.698682; 1 228503677 chr1:SNP:1941 A G 1749 . DP=66;DP4=0,0,37,29;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs1150912,g1000:0.700879,esp5400:0.752334,ExAC:0.671,MutationTaster:0; 1 228504472 chr1:SNP:1942 T C 2278 . DP=86;DP4=0,0,50,36;AD=0,86;TYPE=SNP;DBXREF=dbSNP:rs1188732,g1000:0.699281,esp5400:0.744706,ExAC:0.689,MutationTaster:0; 1 228504591 chr1:SNP:1943 C A 793 . DP=102;DP4=22,38,14,28;AD=60,42;TYPE=SNP;DBXREF=dbSNP:rs61825301,g1000:0.145367,esp5400:0.163087,ExAC:0.15,MutationTaster:0; 1 228504669 chr1:SNP:1944 G A 487 . DP=39;DP4=4,12,1,22;AD=16,23;TYPE=SNP;DBXREF=dbSNP:rs61825302,g1000:0.145567,esp5400:0.141839,ExAC:0.103; 1 228504670 chr1:SNP:1945 C T 183 . DP=35;DP4=1,24,1,9;AD=25,10;TYPE=SNP;DBXREF=dbSNP:rs11810627,g1000:0.330272,esp5400:0.373928,ExAC:0.285,MutationTaster:0; 1 228504701 chr1:INDEL:129 G GCTCC 428 low_coverage;off_target DP=18;DP4=0,0,0,16;AD=0,16;TYPE=INDEL;DBXREF=dbSNP:rs111792077,g1000:0.699081,ExAC:0.421; 1 228505668 chr1:SNP:1946 C G 10000 . DP=130;DP4=0,0,81,49;AD=0,130;TYPE=SNP;DBXREF=dbSNP:rs1188729,g1000:0.699281,esp5400:0.746783,ExAC:0.694,MutationTaster:0; 1 228505699 chr1:SNP:1947 T C 10000 . DP=171;DP4=0,0,83,87;AD=0,170;TYPE=SNP;DBXREF=dbSNP:rs1188728,g1000:0.705871,esp5400:0.754919,ExAC:0.696; 1 228505739 chr1:SNP:1948 G A 1402 . DP=177;DP4=43,62,28,44;AD=105,72;TYPE=SNP;DBXREF=dbSNP:rs3795801,g1000:0.173123,esp5400:0.196275,ExAC:0.184,MutationTaster:0; 1 228509427 chr1:SNP:1949 A G 3028 . DP=113;DP4=1,0,67,45;AD=1,112;TYPE=SNP;DBXREF=dbSNP:rs373610,g1000:0.684704,esp5400:0.739913,ExAC:0.686,MutationTaster:0; 1 228522029 chr1:INDEL:130 TA T 148 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=INDEL;DBXREF=dbSNP:rs57891072,g1000:0.522564; 1 228522483 chr1:SNP:1950 C T 494 off_target DP=31;DP4=7,2,18,4;AD=9,22;TYPE=SNP;DBXREF=dbSNP:rs11581192,g1000:0.034345,esp5400:0.035444,ExAC:0.019; 1 228523412 chr1:SNP:1951 G A 501 off_target DP=37;DP4=13,2,20,2;AD=15,22;TYPE=SNP;DBXREF=dbSNP:rs12061733,g1000:0.126797; 1 228523442 chr1:SNP:1952 T C 693 off_target DP=56;DP4=20,4,21,11;AD=24,32;TYPE=SNP;DBXREF=dbSNP:rs1684868,g1000:0.478435,esp5400:0.487475,ExAC:0.488; 1 228523447 chr1:SNP:1953 T C 1379 off_target DP=52;DP4=0,0,37,15;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs10799473,g1000:0.813498,esp5400:0.872642,ExAC:0.808; 1 228523618 chr1:SNP:1954 G A 480 off_target DP=35;DP4=2,12,5,16;AD=14,21;TYPE=SNP;DBXREF=dbSNP:rs1757160,g1000:0.474241,esp5400:0.497835; 1 228524642 chr1:SNP:1955 T C 192 off_target DP=24;DP4=14,0,9,0;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs56063628,g1000:0.0353435; 1 228525898 chr1:SNP:1956 C G 427 off_target DP=47;DP4=8,18,8,13;AD=26,21;TYPE=SNP;DBXREF=dbSNP:rs1188717,g1000:0.538339; 1 228526011 chr1:SNP:1957 C T 645 . DP=54;DP4=12,12,20,10;AD=24,30;TYPE=SNP;DBXREF=dbSNP:rs11577699,g1000:0.117612,esp5400:0.152755,ExAC:0.131,MutationTaster:0; 1 228526665 chr1:SNP:1958 T C 554 . DP=43;DP4=7,10,12,14;AD=17,26;TYPE=SNP;DBXREF=dbSNP:rs505629,g1000:0.494409,esp5400:0.547509,ExAC:0.356,MutationTaster:0.543; 1 228527844 chr1:SNP:1959 T G 264 off_target DP=21;DP4=0,9,2,10;AD=9,12;TYPE=SNP;DBXREF=dbSNP:rs11588701,g1000:0.0297524,esp5400:0.036585,ExAC:0.029; 1 228528563 chr1:SNP:1960 C G 465 . DP=76;DP4=25,26,14,11;AD=51,25;TYPE=SNP;DBXREF=dbSNP:rs1188710,g1000:0.538738,esp5400:0.548118,ExAC:0.486,MutationTaster:0.001; 1 228529129 chr1:SNP:1961 C A 252 . DP=31;DP4=10,8,5,8;AD=18,13;TYPE=SNP;DBXREF=dbSNP:rs3795810,g1000:0.138179,esp5400:0.079702,ExAC:0.126; 1 228538242 chr1:INDEL:131 CTCTA C 166 off_target DP=24;DP4=15,0,8,0;AD=15,8;TYPE=INDEL;DBXREF=dbSNP:rs148734366,g1000:0.14397; 1 228538346 chr1:INDEL:132 TTC T 463 off_target DP=57;DP4=29,4,18,4;AD=33,22;TYPE=INDEL;DBXREF=dbSNP:rs138471966,g1000:0.127396; 1 228538470 chr1:SNP:1962 C G 1350 off_target DP=137;DP4=29,42,33,33;AD=71,66;TYPE=SNP;DBXREF=dbSNP:rs12031395,g1000:0.147764; 1 228538968 chr1:SNP:1963 C T 149 off_target DP=23;DP4=12,3,6,2;AD=15,8;TYPE=SNP;DBXREF=dbSNP:rs3795811,g1000:0.139577; 1 228543800 chr1:SNP:1964 C T 788 off_target DP=94;DP4=39,14,30,11;AD=53,41;TYPE=SNP;DBXREF=dbSNP:rs3795814,g1000:0.172125,esp5400:0.102968; 1 228547256 chr1:SNP:1965 G A 136 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs12027720,g1000:0.147564,esp5400:0.085995,ExAC:0.088; 1 228550426 chr1:SNP:1966 C T 208 . DP=37;DP4=12,13,4,8;AD=25,12;TYPE=SNP;DBXREF=dbSNP:rs35155240,g1000:0.146965,esp5400:0.08306,ExAC:0.112,MutationTaster:0; 1 228550429 chr1:SNP:1967 C T 311 . DP=32;DP4=6,11,4,11;AD=17,15;TYPE=SNP;DBXREF=dbSNP:rs11585049,g1000:0.0443291,esp5400:0.038485,ExAC:0.035,MutationTaster:0; 1 228552571 chr1:SNP:1968 T C 159 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs541959,g1000:0.302117; 1 228553651 chr1:SNP:1969 T C 115 low_coverage;off_target DP=8;DP4=3,0,5,0;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs572442,g1000:0.308107; 1 228553675 chr1:SNP:1970 C T 184 off_target DP=21;DP4=12,0,9,0;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs573128,g1000:0.26897; 1 228556403 chr1:SNP:1971 C T 194 off_target DP=44;DP4=18,14,6,5;AD=32,11;TYPE=SNP;DBXREF=dbSNP:rs35711644,g1000:0.125599,esp5400:0.069635,ExAC:0.112; 1 228558892 chr1:SNP:1972 C T 556 . DP=48;DP4=13,8,15,11;AD=21,26;TYPE=SNP;DBXREF=dbSNP:rs35186354,g1000:0.033746,esp5400:0.044345,ExAC:0.057,MutationTaster:1; 1 228559994 chr1:SNP:1973 C T 532 . DP=47;DP4=15,7,17,8;AD=22,25;TYPE=SNP;DBXREF=dbSNP:rs500049,g1000:0.589058,esp5400:0.554839,ExAC:0.487,MutationTaster:0.981; 1 228560139 chr1:SNP:1974 A G 10000 . DP=170;DP4=0,0,106,64;AD=0,170;TYPE=SNP;DBXREF=dbSNP:rs498382,g1000:0.974241,esp5400:0.945088,ExAC:0.928,MutationTaster:0.948; 1 228560700 chr1:SNP:1975 T C 216 low_coverage DP=15;DP4=0,6,0,9;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs512253,g1000:0.757987,esp5400:0.653209,ExAC:0.628,MutationTaster:0.976; 1 228564884 chr1:SNP:1976 G A 928 . DP=92;DP4=23,24,14,31;AD=47,45;TYPE=SNP;DBXREF=dbSNP:rs56174824,g1000:0.140775,esp5400:0.086078,ExAC:0.108,MutationTaster:1; 1 228597130 chr1:SNP:1977 G A 188 low_coverage;off_target DP=17;DP4=3,5,5,4;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs61827276,g1000:0.0443291,esp5400:0.059597,ExAC:0.055; 1 228601638 chr1:SNP:1978 T C 1148 off_target DP=102;DP4=13,33,23,33;AD=46,56;TYPE=SNP;DBXREF=dbSNP:rs472594,g1000:0.444688,esp5400:0.397193,ExAC:0.317; 1 228602660 chr1:SNP:1979 G C 679 . DP=79;DP4=20,25,18,16;AD=45,34;TYPE=SNP;DBXREF=dbSNP:rs503203,g1000:0.295927,esp5400:0.244562,ExAC:0.164; 1 228612838 chr1:SNP:1980 G T 925 . DP=108;DP4=28,32,25,23;AD=60,48;TYPE=SNP;DBXREF=dbSNP:rs2230656,g1000:0.690296,esp5400:0.725971,ExAC:0.821; 1 230415025 chr1:SNP:1981 A G 920 off_target DP=70;DP4=25,3,29,13;AD=28,42;TYPE=SNP;DBXREF=dbSNP:rs6698963,g1000:0.722843,esp5400:0.593343,ExAC:0.556; 1 230415293 chr1:SNP:1982 C T 316 off_target DP=25;DP4=0,11,1,13;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs2273967,g1000:0.256789; 1 230841687 chr1:SNP:1983 T C 1538 . DP=58;DP4=0,0,44,14;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs7080,g1000:0.972644,esp5400:0.941253,ExAC:0.944,clinvar:rs7080|2; 1 231377081 chr1:SNP:1984 C T 451 low_coverage;off_target DP=17;DP4=0,0,13,4;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs518686,g1000:0.581869,esp5400:0.551589,ExAC:0.549; 1 231386612 chr1:SNP:1985 T A 301 low_coverage;off_target DP=11;DP4=0,0,10,1;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs508908,g1000:0.631789; 1 231396116 chr1:INDEL:133 T TTA 939 off_target DP=35;DP4=1,0,32,2;AD=1,34;TYPE=INDEL;DBXREF=dbSNP:rs3215759,g1000:0.63139; 1 231396634 chr1:SNP:1986 T C 218 low_coverage;off_target DP=9;DP4=0,0,1,8;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs531592,g1000:0.52516; 1 231400905 chr1:SNP:1987 A G 319 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs849714,g1000:0.613419; 1 231401596 chr1:SNP:1988 T C 717 off_target DP=27;DP4=0,0,13,14;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs532226,g1000:0.57528,esp5400:0.542672; 1 231401902 chr1:SNP:1989 G A 1228 . DP=45;DP4=0,0,19,26;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs574553,g1000:0.628594,esp5400:0.596022,ExAC:0.568,clinvar:rs574553|2; 1 231408091 chr1:SNP:1990 A G 1617 . DP=61;DP4=0,0,30,31;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs11558492,g1000:0.135583,esp5400:0.168154,ExAC:0.161,clinvar:rs11558492|5|2,MutationTaster:0.002; 1 231502245 chr1:SNP:1991 T A 1064 off_target DP=70;DP4=4,0,13,34;AD=4,47;TYPE=SNP;DBXREF=dbSNP:rs1435167,g1000:0.429712,esp5400:0.446551; 1 231502310 chr1:SNP:1992 T C 710 off_target DP=30;DP4=0,1,3,26;AD=1,29;TYPE=SNP;DBXREF=dbSNP:rs1435166,g1000:0.471246; 1 231506557 chr1:SNP:1993 G A 504 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs2256908,g1000:0.492812; 1 231830295 chr1:SNP:1994 G A 949 . DP=77;DP4=13,20,15,29;AD=33,44;TYPE=SNP;DBXREF=dbSNP:rs3738401,g1000:0.232228,esp5400:0.258226,ExAC:0.292,clinvar:rs3738401|1,MutationTaster:0; 1 231906589 chr1:SNP:1995 C T 628 . DP=53;DP4=16,6,19,12;AD=22,31;TYPE=SNP;DBXREF=dbSNP:rs2492367,g1000:0.142173,esp5400:0.145566,ExAC:0.12; 1 231931048 chr1:SNP:1996 T C 538 . DP=40;DP4=3,12,9,16;AD=15,25;TYPE=SNP;DBXREF=dbSNP:rs2273890,g1000:0.104433,esp5400:0.125325,ExAC:0.116; 1 231936016 chr1:SNP:1997 A G 955 off_target DP=36;DP4=0,0,9,27;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs2759354,g1000:0.988419; 1 232002392 chr1:SNP:1998 A G 350 low_coverage;off_target DP=14;DP4=0,0,5,9;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs3082,g1000:0.344649,esp5400:0.328077; 1 235590265 chr1:SNP:1999 A T 105 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs142525043,g1000:0.00359425; 1 235590559 chr1:SNP:2000 G A 245 . DP=21;DP4=3,7,5,6;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs12757197,g1000:0.116813,esp5400:0.14287,ExAC:0.099; 1 235594182 chr1:SNP:2001 A G 824 off_target DP=32;DP4=0,0,8,24;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs2291687,g1000:0.733826; 1 235598973 chr1:SNP:2002 C T 165 off_target DP=25;DP4=17,0,8,0;AD=17,8;TYPE=SNP;DBXREF=dbSNP:rs2055127,g1000:0.50619; 1 235612219 chr1:SNP:2003 T A 159 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs7537,g1000:0.116414; 1 235856538 chr1:INDEL:134 GCC GCCC 145 low_coverage;off_target DP=13;DP4=1,0,12,0;AD=1,12;TYPE=INDEL;DBXREF=dbSNP:rs5781839,g1000:0.973442; 1 235929596 chr1:SNP:2004 C A 132 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs141197189,g1000:0.0171725,esp5400:0.029665,ExAC:0.031,clinvar:rs141197189|2; 1 236175153 chr1:SNP:2005 T C 148 low_coverage;off_target DP=13;DP4=5,1,5,2;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2031486,g1000:0.161542; 1 236175327 chr1:SNP:2006 C A 443 . DP=41;DP4=9,11,6,15;AD=20,21;TYPE=SNP;DBXREF=dbSNP:rs3738531,g1000:0.194489,esp5400:0.101878,ExAC:0.166,MutationTaster:1; 1 236175339 chr1:SNP:2007 T C 721 . DP=28;DP4=0,0,11,17;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs2031487,g1000:0.696685,esp5400:0.585053,ExAC:0.591; 1 236180580 chr1:SNP:2008 C G 340 . DP=31;DP4=6,9,5,11;AD=15,16;TYPE=SNP;DBXREF=dbSNP:rs3768081,g1000:0.404353,esp5400:0.188697,ExAC:0.268; 1 236187365 chr1:SNP:2009 T C 228 . DP=33;DP4=14,5,6,7;AD=19,13;TYPE=SNP;DBXREF=dbSNP:rs3738533,g1000:0.234824,esp5400:0.1504,ExAC:0.193; 1 236557771 chr1:SNP:2010 G A 2040 . DP=77;DP4=0,0,41,36;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs966365,g1000:0.776757,esp5400:0.74103,ExAC:0.831,clinvar:rs966365|2,MutationTaster:0; 1 236557928 chr1:SNP:2011 G A 770 off_target DP=29;DP4=0,0,2,27;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs966364,g1000:0.772364; 1 236572475 chr1:SNP:2012 A G 233 off_target DP=33;DP4=18,3,10,2;AD=21,12;TYPE=SNP;DBXREF=dbSNP:rs669710,g1000:0.461861,esp5400:0.54908,ExAC:0.527; 1 236590629 chr1:SNP:2013 C T 202 low_coverage;off_target DP=17;DP4=8,0,8,1;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs636378,g1000:0.358027,esp5400:0.500619; 1 236590659 chr1:SNP:2014 G C 288 off_target DP=25;DP4=11,1,12,1;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs636048,g1000:0.358227,esp5400:0.449105,ExAC:0.485; 1 236882303 chr1:SNP:2015 T C 1519 . DP=59;DP4=0,0,26,33;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs1341864,g1000:0.992612,esp5400:0.991448,ExAC:0.998,clinvar:rs1341864|2; 1 236883240 chr1:SNP:2016 T C 292 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1768053,g1000:0.992013; 1 236883421 chr1:SNP:2017 C T 1133 . DP=44;DP4=0,0,20,24;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs1341863,g1000:0.920727,esp5400:0.935397,ExAC:0.962,clinvar:rs1341863|2; 1 236883564 chr1:SNP:2018 G A 365 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1341862,g1000:0.922324; 1 236902560 chr1:SNP:2019 C T 350 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs7527525,g1000:0.372404,esp5400:0.477594,ExAC:0.512; 1 236902594 chr1:SNP:2020 C G 593 . DP=23;DP4=0,0,19,4;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2288601,g1000:0.767572,esp5400:0.775423,ExAC:0.775,clinvar:rs2288601|2; 1 236902865 chr1:SNP:2021 A C 1167 off_target DP=44;DP4=0,0,8,36;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2288602,g1000:0.422724,esp5400:0.497582,ExAC:0.567; 1 236902955 chr1:SNP:2022 T C 246 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs7544174,g1000:0.420727; 1 236910839 chr1:SNP:2023 A G 129 off_target DP=25;DP4=18,0,7,0;AD=18,7;TYPE=SNP;DBXREF=dbSNP:rs75222641,g1000:0.0692891; 1 236912219 chr1:SNP:2024 G T 225 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3818884,g1000:0.775359; 1 236912286 chr1:SNP:2025 G A 710 off_target DP=26;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2297956,g1000:0.916334; 1 236923299 chr1:SNP:2026 A G 309 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs10925223,g1000:0.410543; 1 236924506 chr1:SNP:2027 A G 670 off_target DP=26;DP4=0,0,2,24;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2282366,g1000:0.798123,esp5400:0.861034,ExAC:0.849; 1 236926030 chr1:SNP:2028 A G 227 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1051251,g1000:0.34984; 1 236972186 chr1:SNP:2029 A G 403 off_target DP=29;DP4=0,11,0,18;AD=11,18;TYPE=SNP;DBXREF=dbSNP:rs12759827,g1000:0.0946486; 1 236978992 chr1:INDEL:135 T TTCTG 286 off_target DP=59;DP4=8,33,4,11;AD=41,15;TYPE=INDEL;DBXREF=dbSNP:rs5781924,g1000:0.769569,ExAC:0.683; 1 236979597 chr1:SNP:2030 A G 542 off_target DP=37;DP4=13,0,24,0;AD=13,24;TYPE=SNP;DBXREF=dbSNP:rs3795708,g1000:0.316893; 1 236988593 chr1:INDEL:136 ATTTTT ATTTTTT 126 off_target DP=52;DP4=16,10,15,10;AD=26,25;TYPE=INDEL;DBXREF=dbSNP:rs5781926,g1000:0.315495,ExAC:0.377; 1 237001926 chr1:SNP:2031 A G 123 low_coverage;off_target DP=11;DP4=1,4,1,5;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs3820568,g1000:0.327676,esp5400:0.353876,ExAC:0.386; 1 237013914 chr1:INDEL:137 CTGA C 330 off_target DP=46;DP4=9,20,6,10;AD=29,16;TYPE=INDEL;DBXREF=dbSNP:rs35913043; 1 237014093 chr1:SNP:2032 G A 120 low_coverage;off_target DP=9;DP4=0,4,1,4;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs10925248,g1000:0.416733; 1 237024387 chr1:SNP:2033 C T 189 off_target DP=27;DP4=15,0,0,10;AD=15,10;TYPE=SNP;DBXREF=dbSNP:rs747038471,ExAC:3.382e-05; 1 237024391 chr1:SNP:2034 C T 237 off_target DP=27;DP4=14,1,0,12;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs769247518,ExAC:4.234e-05; 1 237037853 chr1:SNP:2035 C A 628 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2712831,g1000:1; 1 237038008 chr1:SNP:2036 T A 116 off_target DP=27;DP4=4,11,3,4;AD=15,7;TYPE=SNP;DBXREF=dbSNP:rs10925256,g1000:0.381989,esp5400:0.001315,ExAC:0.289; 1 237038161 chr1:SNP:2037 T C 305 off_target DP=40;DP4=10,14,7,9;AD=24,16;TYPE=SNP;DBXREF=dbSNP:rs1770449,g1000:0.232228,esp5400:0.265663,ExAC:0.315,clinvar:rs1770449|2; 1 237048562 chr1:SNP:2038 G A 114 low_coverage;off_target DP=17;DP4=3,8,1,5;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs2275566,g1000:0.761781,esp5400:0.724093,ExAC:0.676; 1 237054569 chr1:SNP:2039 A G 883 . DP=84;DP4=19,20,17,28;AD=39,45;TYPE=SNP;DBXREF=dbSNP:rs2229276,g1000:0.323283,esp5400:0.343001,ExAC:0.383,clinvar:rs2229276|2; 1 237058744 chr1:SNP:2040 C A 730 . DP=98;DP4=24,35,14,25;AD=59,39;TYPE=SNP;DBXREF=dbSNP:rs12070777,g1000:0.321486,esp5400:0.344244,ExAC:0.363,clinvar:rs12070777|2; 1 237058828 chr1:SNP:2041 C T 296 . DP=32;DP4=1,16,1,13;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs1131449,g1000:0.529153,esp5400:0.544718,ExAC:0.536,clinvar:rs1131449|2; 1 237060433 chr1:SNP:2042 G T 356 off_target DP=34;DP4=7,11,9,7;AD=18,16;TYPE=SNP;DBXREF=dbSNP:rs3820571,g1000:0.752396,esp5400:0.714259,ExAC:0.675,clinvar:rs3820571|2; 1 237061056 chr1:SNP:2043 A C 156 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs2853522,g1000:0.540136; 1 237540615 chr1:SNP:2044 A C 208 . DP=22;DP4=8,4,9,1;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs10925391,g1000:0.362819,esp5400:0.301087,ExAC:0.29,clinvar:rs10925391|2; 1 237551376 chr1:SNP:2045 T A 770 . DP=58;DP4=9,13,19,17;AD=22,36;TYPE=SNP;DBXREF=dbSNP:rs10754602,g1000:0.55651,esp5400:0.527291,ExAC:0.565,clinvar:rs10754602|2; 1 237586384 chr1:SNP:2046 T C 288 . DP=25;DP4=8,4,11,2;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs16835237,g1000:0.170128,esp5400:0.088295,ExAC:0.14,clinvar:rs16835237|2; 1 237670140 chr1:SNP:2047 A G 1245 off_target DP=50;DP4=0,0,14,35;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs2618702,g1000:0.699481,esp5400:0.709847,ExAC:0.663,clinvar:rs2618702|2; 1 237675163 chr1:SNP:2048 G A 101 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs67622164,g1000:0.295327; 1 237693921 chr1:SNP:2049 A G 656 off_target DP=24;DP4=0,0,1,23;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2779365,g1000:0.775559; 1 237711644 chr1:SNP:2050 T C 437 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2618661,g1000:0.830272; 1 237711797 chr1:SNP:2051 A G 1881 . DP=69;DP4=0,0,41,28;AD=0,69;TYPE=SNP;DBXREF=dbSNP:rs2253273,g1000:0.830272,esp5400:0.851652,ExAC:0.926,clinvar:rs2253273|2|2; 1 237729774 chr1:SNP:2052 G A 372 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2248295,g1000:0.795527; 1 237730124 chr1:SNP:2053 A G 824 off_target DP=33;DP4=0,0,9,24;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2805390,g1000:0.905551,esp5400:0.905184,ExAC:0.957,clinvar:rs2805390|2; 1 237730169 chr1:SNP:2054 C T 465 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2779401,g1000:0.919329; 1 237788862 chr1:SNP:2055 T C 135 low_coverage;off_target DP=16;DP4=9,0,7,0;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs571026,g1000:0.740016; 1 237794603 chr1:SNP:2056 A G 515 off_target DP=20;DP4=0,0,20,0;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1759123,g1000:0.615016; 1 237801770 chr1:SNP:2057 T C 1987 . DP=75;DP4=0,0,30,45;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs707189,g1000:0.954872,esp5400:0.959378,ExAC:0.988,clinvar:rs707189|2|2; 1 237823959 chr1:SNP:2058 C T 328 low_coverage;off_target DP=12;DP4=0,0,11,1;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs475234,g1000:0.995607; 1 237824332 chr1:SNP:2059 G A 309 low_coverage;off_target DP=12;DP4=0,0,3,9;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs471647,g1000:0.994808; 1 237831103 chr1:SNP:2060 C A 1010 off_target DP=37;DP4=0,0,32,5;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs477245,g1000:0.952077; 1 237862436 chr1:SNP:2061 T C 394 low_coverage;off_target DP=14;DP4=0,0,2,12;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs1521744,g1000:0.727436; 1 237863718 chr1:SNP:2062 T G 1458 . DP=55;DP4=0,0,21,34;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs2797436,g1000:0.969249,esp5400:0.971443,ExAC:0.991,clinvar:rs2797436|2|2; 1 237865203 chr1:SNP:2063 C T 901 off_target DP=33;DP4=0,0,29,4;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs939699,g1000:0.969249; 1 237872714 chr1:INDEL:138 GTTTTTTTTTTTT GTTTTTTTTTTT 191 homopolymer_region;off_target DP=98;DP4=7,4,65,21;AD=11,86;TYPE=INDEL;DBXREF=dbSNP:rs35261418,g1000:0.765974; 1 237881770 chr1:SNP:2064 C T 1167 . DP=44;DP4=0,0,26,18;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2797441,g1000:0.960463,esp5400:0.960766,ExAC:0.989,clinvar:rs2797441|2|2; 1 237890437 chr1:SNP:2065 C T 1220 . DP=46;DP4=0,0,15,31;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs2685301,g1000:0.960264,esp5400:0.959544,ExAC:0.989,clinvar:rs2685301|2|2; 1 237893674 chr1:SNP:2066 C T 1168 off_target DP=47;DP4=0,0,11,35;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs2797445,g1000:0.985224,esp5400:0.98564,ExAC:0.995,clinvar:rs2797445|2; 1 237923053 chr1:SNP:2067 C T 727 off_target DP=55;DP4=10,11,21,13;AD=21,34;TYPE=SNP;DBXREF=dbSNP:rs2253831,g1000:0.761581,esp5400:0.724257,ExAC:0.711,clinvar:rs2253831|2; 1 237924112 chr1:SNP:2068 C A 230 off_target DP=31;DP4=17,3,11,0;AD=20,11;TYPE=SNP;DBXREF=dbSNP:rs2056387,g1000:0.244409; 1 237924114 chr1:INDEL:139 C CAATGAATGGAGACATGT 122 off_target DP=43;DP4=26,4,7,0;AD=30,7;TYPE=INDEL;DBXREF=dbSNP:rs6143694,g1000:0.288738; 1 237951451 chr1:SNP:2069 A G 638 off_target DP=56;DP4=8,18,7,23;AD=26,30;TYPE=SNP;DBXREF=dbSNP:rs2256242,g1000:0.636581,esp5400:0.61846,ExAC:0.557,clinvar:rs2256242|2; 1 237951482 chr1:SNP:2070 G A 374 off_target DP=33;DP4=4,11,5,13;AD=15,18;TYPE=SNP;DBXREF=dbSNP:rs16835818,g1000:0.297923,esp5400:0.352424,ExAC:0.253,clinvar:rs16835818|2; 1 237954545 chr1:SNP:2071 G C 328 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs790904,g1000:0.61222; 1 237957146 chr1:SNP:2072 G A 484 off_target DP=20;DP4=0,0,14,6;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs790902,g1000:0.734026,esp5400:0.626535,ExAC:0.702,clinvar:rs790902|2; 1 237957161 chr1:SNP:2073 A G 678 . DP=28;DP4=0,0,13,15;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs790901,g1000:0.757588,esp5400:0.652519,ExAC:0.73,clinvar:rs790901|2; 1 237957309 chr1:SNP:2074 A C 515 off_target DP=20;DP4=0,0,11,9;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs790900,g1000:0.750799,esp5400:0.649397,ExAC:0.724,clinvar:rs790900|2; 1 237965035 chr1:SNP:2075 C A 450 low_coverage;off_target DP=16;DP4=0,0,15,1;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2790346,g1000:0.463059; 1 237965043 chr1:SNP:2076 A G 451 low_coverage;off_target DP=17;DP4=0,0,16,1;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2790347,g1000:0.46226; 1 237965094 chr1:SNP:2077 G T 528 off_target DP=22;DP4=1,0,20,1;AD=1,21;TYPE=SNP;DBXREF=dbSNP:rs2794820,g1000:0.46226,esp5400:0.405999; 1 237965131 chr1:SNP:2078 G A 822 off_target DP=34;DP4=1,0,25,7;AD=1,32;TYPE=SNP;DBXREF=dbSNP:rs9428384,g1000:0.405152,esp5400:0.344382,ExAC:0.414,clinvar:rs9428384|2; 1 240070944 chr1:SNP:2079 G A 1180 . DP=133;DP4=42,32,33,26;AD=74,59;TYPE=SNP;DBXREF=dbSNP:rs2067481,g1000:0.0125799,esp5400:0.007715,ExAC:0.018,MutationTaster:0.001; 1 240255568 chr1:INDEL:140 GGGC G 371 . DP=29;DP4=10,1,16,0;AD=11,16;TYPE=INDEL;DBXREF=dbSNP:rs140531536,g1000:0.706669,ExAC:0.686; 1 240256822 chr1:SNP:2080 C A 398 low_coverage DP=15;DP4=0,0,4,11;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs10926124,g1000:0.329872,esp5400:0.392333,ExAC:0.45; 1 240286773 chr1:SNP:2081 C G 246 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3820506,g1000:0.182508; 1 240351628 chr1:SNP:2082 T C 464 low_coverage;off_target DP=18;DP4=0,0,5,13;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4659948,g1000:0.590855,esp5400:0.636982; 1 240370629 chr1:SNP:2083 C G 2990 . DP=113;DP4=0,0,56,57;AD=0,113;TYPE=SNP;DBXREF=dbSNP:rs10926166,g1000:0.28734,esp5400:0.352017,ExAC:0.348; 1 240371106 chr1:SNP:2084 C T 189 . DP=31;DP4=9,12,6,4;AD=21,10;TYPE=SNP;DBXREF=dbSNP:rs11586155,esp5400:0.283835; 1 240421383 chr1:SNP:2085 G A 388 off_target DP=20;DP4=0,4,6,10;AD=4,16;TYPE=SNP;DBXREF=dbSNP:rs10926181,g1000:0.768171,esp5400:0.723515,ExAC:0.679; 1 240421437 chr1:SNP:2086 C T 322 low_coverage;off_target DP=17;DP4=0,4,1,12;AD=4,13;TYPE=SNP;DBXREF=dbSNP:rs10926182,g1000:0.423123; 1 240492543 chr1:SNP:2087 G A 366 off_target DP=27;DP4=9,2,9,7;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs6686353,g1000:0.623602; 1 240492734 chr1:SNP:2088 G A 670 . DP=46;DP4=5,12,7,22;AD=17,29;TYPE=SNP;DBXREF=dbSNP:rs3795677,g1000:0.320887,esp5400:0.289366,ExAC:0.302,MutationTaster:1; 1 240497265 chr1:SNP:2089 A C 341 off_target DP=31;DP4=6,8,8,9;AD=14,17;TYPE=SNP;DBXREF=dbSNP:rs10157874,g1000:0.65016,esp5400:0.624465,ExAC:0.566; 1 240601269 chr1:SNP:2090 A G 328 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2356386,g1000:0.927316; 1 240601632 chr1:SNP:2091 A G 188 low_coverage;off_target DP=13;DP4=1,4,0,8;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs2356387,g1000:0.239816; 1 240975213 chr1:SNP:2092 T C 437 . DP=38;DP4=14,3,12,9;AD=17,21;TYPE=SNP;DBXREF=dbSNP:rs2275742,g1000:0.404553,esp5400:0.469784,ExAC:0.505; 1 240977964 chr1:SNP:2093 G T 355 off_target DP=35;DP4=13,5,16,1;AD=18,17;TYPE=SNP;DBXREF=dbSNP:rs12744536,g1000:0.529153,esp5400:0.629392; 1 240979803 chr1:SNP:2094 G A 122 low_coverage;off_target DP=15;DP4=2,7,0,6;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs3738068,g1000:0.693291; 1 241033608 chr1:SNP:2095 C T 166 low_coverage;off_target DP=11;DP4=0,4,1,6;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs261800,g1000:0.31849; 1 241100122 chr1:SNP:2096 G T 982 off_target DP=37;DP4=0,0,4,33;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs261857,g1000:0.347843; 1 241146322 chr1:SNP:2097 A G 375 off_target DP=32;DP4=6,7,10,9;AD=13,19;TYPE=SNP;DBXREF=dbSNP:rs7520707,g1000:0.35603,esp5400:0.382754; 1 241519098 chr1:SNP:2098 T A 478 low_coverage;off_target DP=18;DP4=0,0,2,16;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4659599,g1000:0.948283,esp5400:0.950363,ExAC:0.978; 1 241667233 chr1:SNP:2099 C T 328 off_target DP=30;DP4=15,0,15,0;AD=15,15;TYPE=SNP;DBXREF=dbSNP:rs4660099,g1000:0.214257; 1 241667244 chr1:SNP:2100 G T 796 off_target DP=30;DP4=0,0,30,0;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs4659607,g1000:0.735823; 1 241675119 chr1:SNP:2101 G C 119 low_coverage;off_target DP=11;DP4=5,0,5,1;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs6673988,g1000:0.285942; 1 242042301 chr1:SNP:2102 G A 10000 . DP=132;DP4=0,0,63,69;AD=0,132;TYPE=SNP;DBXREF=dbSNP:rs1047840,g1000:0.351637,esp5400:0.409184,ExAC:0.361,MutationTaster:0; 1 242044959 chr1:SNP:2103 A G 191 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs1776152,g1000:0.915935; 1 242045275 chr1:SNP:2104 C T 2343 . DP=86;DP4=0,0,34,52;AD=0,86;TYPE=SNP;DBXREF=dbSNP:rs1635498,g1000:0.915335,esp5400:0.94462,ExAC:0.956,MutationTaster:0; 1 242048945 chr1:SNP:2105 C T 309 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1635488,g1000:0.452077,esp5400:0.485384,ExAC:0.519; 1 242053042 chr1:SNP:2106 A G 425 low_coverage;off_target DP=17;DP4=0,0,1,16;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs851797,g1000:0.621605; 1 243433654 chr1:SNP:2107 A G 246 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2275154,g1000:0.286941; 1 243493907 chr1:SNP:2108 A T 1272 . DP=54;DP4=3,2,31,18;AD=5,49;TYPE=SNP;DBXREF=dbSNP:rs2275155,g1000:0.271366,esp5400:0.266871,ExAC:0.297,clinvar:rs2275155|2,MutationTaster:1; 1 243507680 chr1:INDEL:141 CA CAA 937 off_target DP=49;DP4=3,3,11,29;AD=6,40;TYPE=INDEL;DBXREF=dbSNP:rs3215963,g1000:0.237819,ExAC:0.26,clinvar:rs398050192|2; 1 243709071 chr1:SNP:2109 G A 337 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1473466,g1000:0.972244; 1 243777066 chr1:SNP:2110 G A 317 off_target DP=40;DP4=10,14,5,11;AD=24,16;TYPE=SNP;DBXREF=dbSNP:rs2168812,g1000:0.2498,esp5400:0.201871,ExAC:0.204; 1 243828306 chr1:SNP:2111 T A 301 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs167661,g1000:0.77516; 1 245021132 chr1:SNP:2112 C G 140 low_coverage;off_target DP=14;DP4=1,6,1,6;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs9730334,g1000:0.198882; 1 245027349 chr1:SNP:2113 C T 816 . DP=87;DP4=19,28,22,17;AD=47,39;TYPE=SNP;DBXREF=dbSNP:rs6675421,g1000:0.285144,esp5400:0.255366,ExAC:0.249; 1 246021941 chr1:SNP:2114 T C 557 . DP=58;DP4=12,18,13,15;AD=30,28;TYPE=SNP;DBXREF=dbSNP:rs2362587,g1000:0.389377,esp5400:0.572132,ExAC:0.567; 1 246022071 chr1:SNP:2115 C T 150 low_coverage;off_target DP=11;DP4=0,4,0,7;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs2185370,g1000:0.384585; 1 246027024 chr1:SNP:2116 A G 330 off_target DP=26;DP4=10,1,11,4;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs12123124,g1000:0.390375; 1 246027029 chr1:SNP:2117 A T 347 off_target DP=38;DP4=20,1,12,5;AD=21,17;TYPE=SNP;DBXREF=dbSNP:rs61830203,g1000:0.390375; 1 246027034 chr1:SNP:2118 G C 1114 off_target DP=42;DP4=0,0,35,7;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs2153404,g1000:0.990615; 1 246091115 chr1:SNP:2119 C G 246 low_coverage;off_target DP=9;DP4=0,0,8,1;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2275313,g1000:0.729034; 1 246091457 chr1:SNP:2120 T C 628 off_target DP=23;DP4=0,0,1,22;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs6669768,g1000:0.996605; 1 246091515 chr1:SNP:2121 C T 292 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2275318,g1000:0.666134; 1 246490438 chr1:SNP:2122 T C 258 off_target DP=20;DP4=8,0,11,1;AD=8,12;TYPE=SNP;DBXREF=dbSNP:rs3737245,g1000:0.816294; 1 246490442 chr1:SNP:2123 A G 302 off_target DP=21;DP4=8,0,13,0;AD=8,13;TYPE=SNP;DBXREF=dbSNP:rs3737246,g1000:0.816294; 1 246490452 chr1:SNP:2124 G A 288 off_target DP=22;DP4=8,1,11,2;AD=9,13;TYPE=SNP;DBXREF=dbSNP:rs3737247,g1000:0.432109,esp5400:0.571854,ExAC:0.521; 1 246498866 chr1:SNP:2125 A C 288 off_target DP=25;DP4=0,12,0,13;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs10159376,g1000:0.452875; 1 246670274 chr1:SNP:2126 G A 146 low_coverage;off_target DP=12;DP4=5,0,5,2;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs766227325; 1 246670281 chr1:SNP:2127 G C 425 low_coverage;off_target DP=16;DP4=0,0,10,6;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs6671418,g1000:1; 1 246670333 chr1:SNP:2128 A G 1643 off_target DP=62;DP4=0,0,41,21;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs6426303,g1000:0.983427,esp5400:0.980793,ExAC:0.979; 1 246670481 chr1:SNP:2129 C G 10000 . DP=137;DP4=0,1,74,62;AD=1,136;TYPE=SNP;DBXREF=dbSNP:rs7520453,g1000:0.748602,esp5400:0.802721,ExAC:0.793,MutationTaster:0; 1 246670556 chr1:SNP:2130 G C 661 off_target DP=66;DP4=7,27,4,28;AD=34,32;TYPE=SNP; 1 246670626 chr1:INDEL:142 A AGGGGC 737 off_target DP=43;DP4=0,11,0,30;AD=11,30;TYPE=INDEL;DBXREF=dbSNP:rs3841811; 1 247587477 chr1:SNP:2131 G A 540 . DP=53;DP4=9,18,7,19;AD=27,26;TYPE=SNP;DBXREF=dbSNP:rs3806268,g1000:0.38738,esp5400:0.404908,ExAC:0.499,clinvar:rs3806268|2; 1 247587531 chr1:SNP:2132 A G 1352 . DP=51;DP4=0,0,29,22;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs4925543,g1000:0.919928,esp5400:0.919595,ExAC:0.943,clinvar:rs4925543|; 1 247597365 chr1:SNP:2133 G A 765 off_target DP=28;DP4=0,0,27,1;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs10925022,g1000:0.788738,esp5400:0.906674; 1 247597656 chr1:INDEL:143 TGGGG TGGG 371 off_target DP=38;DP4=0,0,4,32;AD=0,36;TYPE=INDEL;DBXREF=dbSNP:rs3835304,g1000:0.476238; 1 247599232 chr1:SNP:2134 G A 120 low_coverage;off_target DP=9;DP4=4,0,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs10754557,g1000:0.484026,esp5400:0.495073,ExAC:0.585; 2 1079130 chr2:SNP:1 G A 681 off_target DP=27;DP4=0,0,26,1;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs4971429,g1000:0.547724; 2 1079132 chr2:SNP:2 G A 734 off_target DP=30;DP4=0,0,28,2;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs4971430,g1000:0.548123; 2 1079143 chr2:SNP:3 A G 933 off_target DP=37;DP4=0,0,36,1;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs4971431,g1000:0.757188; 2 1079320 chr2:SNP:4 C T 1565 . DP=64;DP4=0,0,29,35;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs4971432,g1000:0.669129,esp5400:0.725717,ExAC:0.734; 2 1079442 chr2:SNP:5 G A 210 low_coverage;off_target DP=12;DP4=0,3,0,9;AD=3,9;TYPE=SNP;DBXREF=dbSNP:rs35463228,g1000:0.202476; 2 1093965 chr2:SNP:6 G A 937 off_target DP=91;DP4=32,14,30,15;AD=46,45;TYPE=SNP;DBXREF=dbSNP:rs11127460,g1000:0.297923,esp5400:0.395868,ExAC:0.418; 2 1133188 chr2:INDEL:1 G GCACA 130 off_target DP=25;DP4=15,0,6,1;AD=15,7;TYPE=INDEL;DBXREF=dbSNP:rs71392567; 2 1161017 chr2:SNP:7 A G 116 low_coverage;off_target DP=8;DP4=3,0,5,0;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs60948181,g1000:0.0924521; 2 1168756 chr2:SNP:8 G A 394 off_target DP=32;DP4=9,4,14,5;AD=13,19;TYPE=SNP;DBXREF=dbSNP:rs4597564,g1000:0.372404,esp5400:0.267604,ExAC:0.349; 2 1168982 chr2:SNP:9 T A 177 off_target DP=22;DP4=0,13,0,9;AD=13,9;TYPE=SNP;DBXREF=dbSNP:rs7560649,g1000:0.398762; 2 1204561 chr2:SNP:10 T C 162 off_target DP=20;DP4=11,0,9,0;AD=11,9;TYPE=SNP;DBXREF=dbSNP:rs4971412,g1000:0.380791; 2 1204612 chr2:SNP:11 A G 214 off_target DP=24;DP4=10,3,8,3;AD=13,11;TYPE=SNP;DBXREF=dbSNP:rs4971414,g1000:0.386981; 2 1204615 chr2:SNP:12 C G 146 off_target DP=21;DP4=9,3,7,2;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs4971415,g1000:0.386981; 2 1241592 chr2:SNP:13 C T 1184 off_target DP=47;DP4=0,0,36,11;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs146197111,g1000:0.999401; 2 1241623 chr2:SNP:14 G A 758 off_target DP=77;DP4=21,15,23,17;AD=36,40;TYPE=SNP;DBXREF=dbSNP:rs28541377,g1000:0.272564,esp5400:0.203249,ExAC:0.138; 2 1241905 chr2:SNP:15 T C 212 off_target DP=21;DP4=3,8,2,8;AD=11,10;TYPE=SNP;DBXREF=dbSNP:rs28583446,g1000:0.304712; 2 1241944 chr2:SNP:16 G C 202 low_coverage;off_target DP=17;DP4=0,7,0,10;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs28502413,g1000:0.387181; 2 1243447 chr2:SNP:17 A G 474 off_target DP=49;DP4=17,6,20,5;AD=23,25;TYPE=SNP;DBXREF=dbSNP:rs58094864,g1000:0.273762,esp5400:0.179035; 2 1251087 chr2:INDEL:2 A AAAGGTT 460 off_target DP=37;DP4=10,5,17,4;AD=15,21;TYPE=INDEL;DBXREF=dbSNP:rs58278307,ExAC:0.278; 2 1251088 chr2:SNP:18 C T 422 . DP=32;DP4=9,4,16,3;AD=13,19;TYPE=SNP;DBXREF=dbSNP:rs55953201,ExAC:0.278; 2 1263005 chr2:SNP:19 A G 245 off_target DP=25;DP4=13,0,12,0;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs9330340,g1000:0.352835; 2 1263297 chr2:SNP:20 G A 422 off_target DP=39;DP4=3,15,3,18;AD=18,21;TYPE=SNP;DBXREF=dbSNP:rs9330341,g1000:0.276957; 2 1271110 chr2:SNP:21 G T 410 off_target DP=76;DP4=41,11,19,5;AD=52,24;TYPE=SNP;DBXREF=dbSNP:rs28626835,g1000:0.236821,esp5400:0.170655,ExAC:0.135; 2 1271230 chr2:SNP:22 A G 869 . DP=136;DP4=40,45,25,26;AD=85,51;TYPE=SNP;DBXREF=dbSNP:rs13023962,g1000:0.360024,esp5400:0.303448,ExAC:0.271,MutationTaster:0.001; 2 1271426 chr2:SNP:23 C T 177 low_coverage;off_target DP=17;DP4=2,6,1,8;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs12997053,g1000:0.363618; 2 1320143 chr2:SNP:24 C T 882 . DP=35;DP4=0,0,11,24;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs4927635,g1000:0.505391,esp5400:0.503401,ExAC:0.525,MutationTaster:0.548; 2 1418192 chr2:SNP:25 C G 586 . DP=79;DP4=24,23,15,17;AD=47,32;TYPE=SNP;DBXREF=dbSNP:rs9678281,g1000:0.311701,esp5400:0.349693,ExAC:0.36,clinvar:rs9678281|2; 2 1426621 chr2:SNP:26 A G 183 low_coverage;off_target DP=15;DP4=6,0,9,0;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs2276702,g1000:0.520966; 2 1426787 chr2:SNP:27 G A 926 off_target DP=107;DP4=30,28,27,22;AD=58,49;TYPE=SNP;DBXREF=dbSNP:rs2276701,g1000:0.230631,esp5400:0.211192,ExAC:0.234; 2 1457364 chr2:SNP:28 A G 260 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2070881,g1000:0.927716; 2 1459806 chr2:SNP:29 A G 1321 off_target DP=54;DP4=0,0,36,18;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs4927610,g1000:0.935304,esp5400:0.927256,ExAC:0.942; 2 1460004 chr2:SNP:30 G T 327 . DP=37;DP4=9,11,11,6;AD=20,17;TYPE=SNP;DBXREF=dbSNP:rs4927611,g1000:0.365415,esp5400:0.380647,ExAC:0.379,clinvar:rs4927611|2,MutationTaster:0; 2 1460140 chr2:SNP:31 A G 261 off_target DP=25;DP4=0,12,0,13;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs4927612,g1000:0.362819,esp5400:0.375077; 2 1481155 chr2:SNP:32 G T 693 . DP=52;DP4=7,12,16,17;AD=19,33;TYPE=SNP;DBXREF=dbSNP:rs2280132,g1000:0.408147,esp5400:0.403547,ExAC:0.361,clinvar:rs2280132|2,MutationTaster:0.002; 2 1481231 chr2:SNP:33 G C 848 . DP=61;DP4=12,10,21,18;AD=22,39;TYPE=SNP;DBXREF=dbSNP:rs2175977,g1000:0.710264,esp5400:0.784513,ExAC:0.469,clinvar:rs2175977|2,MutationTaster:1; 2 1488668 chr2:SNP:34 T C 117 low_coverage;off_target DP=16;DP4=0,10,0,6;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs6715129,g1000:0.597045,esp5400:0.548817,ExAC:0.515; 2 1520676 chr2:SNP:35 T C 824 . DP=67;DP4=20,8,22,17;AD=28,39;TYPE=SNP;DBXREF=dbSNP:rs1126799,g1000:0.663938,esp5400:0.611824,ExAC:0.589,clinvar:rs1126799|2,MutationTaster:0.007; 2 1546327 chr2:SNP:36 C G 195 off_target DP=25;DP4=0,14,2,9;AD=14,11;TYPE=SNP;DBXREF=dbSNP:rs1042589,g1000:0.352636,esp5400:0.403834,ExAC:0.389,MutationTaster:0; 2 1642537 chr2:SNP:37 T C 333 off_target DP=23;DP4=8,0,14,1;AD=8,15;TYPE=SNP;DBXREF=dbSNP:rs6729142,g1000:0.878195; 2 1642539 chr2:SNP:38 C T 293 low_coverage;off_target DP=19;DP4=6,0,12,1;AD=6,13;TYPE=SNP;DBXREF=dbSNP:rs6742040,g1000:0.874401; 2 1642544 chr2:SNP:39 C T 287 off_target DP=23;DP4=10,0,12,1;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs116214231,g1000:0.0680911; 2 1642545 chr2:SNP:40 C G 277 off_target DP=28;DP4=12,2,13,1;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs6742039,g1000:0.878195; 2 1647171 chr2:SNP:41 T C 804 . DP=80;DP4=26,13,28,13;AD=39,41;TYPE=SNP;DBXREF=dbSNP:rs6730800,g1000:0.907748,esp5400:0.864389,ExAC:0.908,clinvar:rs6730800|2; 2 1652822 chr2:SNP:42 T G 1335 . DP=138;DP4=32,37,34,35;AD=69,69;TYPE=SNP;DBXREF=dbSNP:rs1863135,g1000:0.935503,esp5400:0.899204,ExAC:0.915,clinvar:rs1863135|2; 2 1747993 chr2:SNP:43 G A 391 off_target DP=36;DP4=8,8,14,6;AD=16,20;TYPE=SNP;DBXREF=dbSNP:rs62116430,g1000:0.407149,esp5400:0.186929,ExAC:0.171; 2 1805430 chr2:SNP:44 G A 404 off_target DP=48;DP4=18,8,16,6;AD=26,22;TYPE=SNP;DBXREF=dbSNP:rs2288178,g1000:0.0591054,esp5400:0.031848,ExAC:0.059; 2 1805489 chr2:SNP:45 A G 630 . DP=71;DP4=19,18,20,13;AD=37,33;TYPE=SNP;DBXREF=dbSNP:rs2288179,g1000:0.061901,esp5400:0.034696,ExAC:0.06; 2 1842774 chr2:SNP:46 T C 332 low_coverage;off_target DP=16;DP4=2,0,14,0;AD=2,14;TYPE=SNP;DBXREF=dbSNP:rs6728613,g1000:0.548522; 2 1842968 chr2:SNP:47 T C 10000 . DP=136;DP4=0,1,82,53;AD=1,135;TYPE=SNP;DBXREF=dbSNP:rs6728368,g1000:0.456669,esp5400:0.434084,ExAC:0.363; 2 1843285 chr2:SNP:48 A G 156 low_coverage;off_target DP=6;DP4=0,0,0,6;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs10196494,g1000:0.540735; 2 1844458 chr2:SNP:49 T C 706 off_target DP=28;DP4=0,0,19,9;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs4381806,g1000:0.540735; 2 1844652 chr2:SNP:50 C T 1255 off_target DP=53;DP4=1,0,37,15;AD=1,52;TYPE=SNP;DBXREF=dbSNP:rs7425544,g1000:0.491613,esp5400:0.379756,ExAC:0.293; 2 1844676 chr2:SNP:51 C T 467 off_target DP=28;DP4=1,0,19,3;AD=1,22;TYPE=SNP;DBXREF=dbSNP:rs7425542,g1000:0.637979; 2 1893133 chr2:SNP:52 C T 279 . DP=37;DP4=16,6,14,1;AD=22,15;TYPE=SNP;DBXREF=dbSNP:rs75247762,g1000:0.0640974,esp5400:0.038181,ExAC:0.056; 2 1926437 chr2:SNP:53 G T 1833 . DP=75;DP4=0,0,38,37;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs1529667,g1000:0.991214,esp5400:0.978855,ExAC:0.98; 2 1946914 chr2:SNP:54 A G 1303 . DP=55;DP4=0,0,32,22;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs3748988,g1000:0.510783,esp5400:0.422935,ExAC:0.274; 2 1983374 chr2:SNP:55 A C 952 off_target DP=94;DP4=22,22,26,24;AD=44,50;TYPE=SNP;DBXREF=dbSNP:rs2304008,g1000:0.464058,esp5400:0.400716,ExAC:0.325; 2 1983619 chr2:SNP:56 A G 209 off_target DP=22;DP4=2,8,5,7;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs7561518,g1000:0.47524,esp5400:0.397959; 2 3623540 chr2:SNP:57 A G 390 off_target DP=33;DP4=0,14,0,19;AD=14,19;TYPE=SNP;DBXREF=dbSNP:rs3087873,g1000:0.835264,esp5400:0.75572; 2 3642361 chr2:SNP:58 T C 1125 off_target DP=46;DP4=0,0,34,12;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs3820897,g1000:0.665136; 2 3653576 chr2:SNP:59 A G 303 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs7604806,g1000:0.663938; 2 3653844 chr2:SNP:60 T C 983 off_target DP=39;DP4=0,0,14,25;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs3739147,g1000:0.751198,ExAC:0.7; 2 3660752 chr2:SNP:61 T C 378 low_coverage;off_target DP=15;DP4=0,0,13,2;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs3811531,g1000:0.575879; 2 3660856 chr2:SNP:62 G A 748 off_target DP=82;DP4=30,13,21,18;AD=43,39;TYPE=SNP;DBXREF=dbSNP:rs7567724,g1000:0.0810703,esp5400:0.11499,ExAC:0.097; 2 3685046 chr2:SNP:63 T C 122 low_coverage;off_target DP=12;DP4=5,1,5,1;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs3811528,g1000:0.852037; 2 3685074 chr2:SNP:64 A G 190 low_coverage;off_target DP=15;DP4=4,2,7,2;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs3811527,g1000:0.852436,esp5400:0.812883,ExAC:0.794; 2 9630231 chr2:SNP:65 C T 1305 off_target DP=52;DP4=0,1,48,3;AD=1,51;TYPE=SNP;DBXREF=dbSNP:rs6705408,g1000:0.460663; 2 9630244 chr2:INDEL:3 ATTT ATT 731 off_target DP=69;DP4=1,1,59,7;AD=2,66;TYPE=INDEL;DBXREF=dbSNP:rs3833563,g1000:0.391174; 2 9630541 chr2:SNP:66 G A 666 . DP=75;DP4=17,22,16,20;AD=39,36;TYPE=SNP;DBXREF=dbSNP:rs55796712,g1000:0.00539137,esp5400:0.014036,ExAC:0.012,MutationTaster:0.144; 2 9631340 chr2:SNP:67 T C 1434 off_target DP=62;DP4=0,0,17,43;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs10495562,g1000:0.294529,esp5400:0.482066; 2 9633137 chr2:SNP:68 T G 865 off_target DP=37;DP4=0,1,13,23;AD=1,36;TYPE=SNP;DBXREF=dbSNP:rs4622692,g1000:0.461661,esp5400:0.642153,ExAC:0.504; 2 9634856 chr2:SNP:69 A G 1562 . DP=62;DP4=0,0,22,40;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs1048610,g1000:0.464457,esp5400:0.643893,ExAC:0.512; 2 9637403 chr2:SNP:70 A G 524 off_target DP=45;DP4=6,14,9,16;AD=20,25;TYPE=SNP;DBXREF=dbSNP:rs41264175,g1000:0.100639,esp5400:0.175033,ExAC:0.156; 2 9642478 chr2:SNP:71 C T 1260 off_target DP=50;DP4=0,0,7,43;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs34367192,g1000:0.291334; 2 9642521 chr2:SNP:72 C T 344 off_target DP=27;DP4=0,11,0,16;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs13031491,g1000:0.152955; 2 9661589 chr2:SNP:73 C T 303 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs4278906,g1000:0.470847; 2 10188649 chr2:SNP:74 A T 10000 . DP=213;DP4=0,0,106,107;AD=0,213;TYPE=SNP;DBXREF=dbSNP:rs11687357,g1000:0.835264,esp5400:0.808329,ExAC:0.834; 2 10581891 chr2:SNP:75 C T 726 off_target DP=81;DP4=20,23,16,22;AD=43,38;TYPE=SNP;DBXREF=dbSNP:rs28362409,g1000:0.000798722,esp5400:0.001487,ExAC:0.001318; 2 11323541 chr2:SNP:76 T C 343 off_target DP=39;DP4=13,7,10,9;AD=20,19;TYPE=SNP;DBXREF=dbSNP:rs72785469,g1000:0.0155751,esp5400:0.037142,ExAC:0.042; 2 11341037 chr2:SNP:77 T C 522 off_target DP=56;DP4=24,5,23,4;AD=29,27;TYPE=SNP;DBXREF=dbSNP:rs41264191,g1000:0.0155751,esp5400:0.037561,ExAC:0.042; 2 11348364 chr2:INDEL:4 C CTAACT 756 off_target DP=38;DP4=0,1,24,7;AD=1,31;TYPE=INDEL;DBXREF=dbSNP:rs141148984,g1000:0.411741,ExAC:0.387; 2 11348609 chr2:INDEL:5 CAAAT C 823 off_target DP=85;DP4=22,22,15,25;AD=44,40;TYPE=INDEL;DBXREF=dbSNP:rs5829297,g1000:0.374601,ExAC:0.435; 2 11351865 chr2:SNP:78 T C 447 . DP=61;DP4=15,20,14,12;AD=35,26;TYPE=SNP;DBXREF=dbSNP:rs55932113,g1000:0.0159744,esp5400:0.036827,ExAC:0.042; 2 11354308 chr2:SNP:79 G C 131 low_coverage;off_target DP=16;DP4=9,0,7,0;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs10495582,g1000:0.38758; 2 11356190 chr2:SNP:80 G A 454 off_target DP=40;DP4=12,5,15,8;AD=17,23;TYPE=SNP;DBXREF=dbSNP:rs726843,g1000:0.352037; 2 11359031 chr2:SNP:81 G T 328 low_coverage;off_target DP=13;DP4=0,0,9,4;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs9808228,g1000:0.941294,esp5400:0.896617; 2 11359120 chr2:SNP:82 G T 336 low_coverage DP=14;DP4=1,0,5,8;AD=1,13;TYPE=SNP;DBXREF=dbSNP:rs2230774,g1000:0.39976,esp5400:0.451956,ExAC:0.497,MutationTaster:0.001; 2 11389907 chr2:SNP:83 C T 123 low_coverage DP=15;DP4=4,5,3,3;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs41264193,g1000:0.0173722,esp5400:0.037394,ExAC:0.043; 2 11426734 chr2:SNP:84 T C 480 . DP=47;DP4=9,13,13,12;AD=22,25;TYPE=SNP;DBXREF=dbSNP:rs56070302,g1000:0.0155751,esp5400:0.037176,ExAC:0.042; 2 11427887 chr2:SNP:85 T A 217 off_target DP=38;DP4=16,10,6,6;AD=26,12;TYPE=SNP;DBXREF=dbSNP:rs72787695,g1000:0.0155751,esp5400:0.035966,ExAC:0.041; 2 11905636 chr2:INDEL:6 GTTTTTTTTT GTTTTTTTT 145 off_target DP=25;DP4=2,0,17,6;AD=2,23;TYPE=INDEL;DBXREF=dbSNP:rs3214670,ExAC:0.504; 2 11907842 chr2:SNP:86 C T 277 off_target DP=23;DP4=9,1,12,1;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs45509591,g1000:0.0844649,esp5400:0.15105,ExAC:0.144,clinvar:rs45509591|2; 2 11911761 chr2:SNP:87 C T 421 . DP=48;DP4=10,16,4,18;AD=26,22;TYPE=SNP;DBXREF=dbSNP:rs11538448,g1000:0.0507188,esp5400:0.100112,ExAC:0.095,clinvar:rs11538448|2; 2 11924950 chr2:SNP:88 T C 337 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs3795974,g1000:0.532748; 2 11932173 chr2:SNP:89 G T 752 off_target DP=29;DP4=0,0,6,23;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs7561070,g1000:0.536941,esp5400:0.695761,ExAC:0.548,clinvar:rs7561070|2; 2 15378822 chr2:INDEL:7 G GAATT 1425 off_target DP=61;DP4=2,1,20,36;AD=3,56;TYPE=INDEL;DBXREF=dbSNP:rs140225141,g1000:0.983427,ExAC:0.976; 2 15417285 chr2:SNP:90 T A 147 off_target DP=22;DP4=5,9,0,8;AD=14,8;TYPE=SNP;DBXREF=dbSNP:rs75287593,g1000:0.704872; 2 15427173 chr2:SNP:91 C T 407 off_target DP=44;DP4=10,13,12,9;AD=23,21;TYPE=SNP;DBXREF=dbSNP:rs4668892,g1000:0.667332,esp5400:0.536159,ExAC:0.509; 2 15448311 chr2:SNP:92 A T 724 off_target DP=65;DP4=16,13,19,17;AD=29,36;TYPE=SNP;DBXREF=dbSNP:rs1318102,g1000:0.668331,esp5400:0.543317,ExAC:0.523; 2 15471027 chr2:SNP:93 T C 312 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6717303,g1000:0.328474; 2 15493881 chr2:SNP:94 A G 858 off_target DP=101;DP4=18,35,19,28;AD=53,47;TYPE=SNP;DBXREF=dbSNP:rs2277915,g1000:0.374601,esp5400:0.536345,ExAC:0.554; 2 15519992 chr2:SNP:95 G T 183 low_coverage;off_target DP=15;DP4=0,6,0,9;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs2058866,g1000:0.517372,esp5400:0.64109,ExAC:0.601; 2 15523266 chr2:SNP:96 A T 134 low_coverage;off_target DP=13;DP4=5,1,6,1;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs6756934,g1000:0.982029; 2 15523549 chr2:SNP:97 T C 332 off_target DP=27;DP4=0,11,0,16;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs3755129,g1000:0.517372; 2 15534642 chr2:SNP:98 G A 135 low_coverage;off_target DP=10;DP4=0,3,0,7;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs3792578,g1000:0.517372; 2 15542159 chr2:SNP:99 A G 161 low_coverage;off_target DP=10;DP4=3,0,6,1;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs6733647,g1000:0.539936; 2 15557535 chr2:SNP:100 A T 146 low_coverage;off_target DP=16;DP4=8,1,7,0;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs1528622,g1000:0.378594; 2 15601287 chr2:INDEL:8 A AT 377 off_target DP=55;DP4=18,11,14,9;AD=29,23;TYPE=INDEL;DBXREF=dbSNP:rs11411624,g1000:0.525359,ExAC:0.604; 2 15601441 chr2:SNP:101 C T 568 . DP=67;DP4=14,22,14,17;AD=36,31;TYPE=SNP;DBXREF=dbSNP:rs7590340,g1000:0.523562,esp5400:0.648541,ExAC:0.605; 2 15601574 chr2:SNP:102 C T 317 off_target DP=41;DP4=6,18,6,11;AD=24,17;TYPE=SNP;DBXREF=dbSNP:rs7590458,g1000:0.525359; 2 15607842 chr2:SNP:103 T C 432 . DP=64;DP4=20,20,11,13;AD=40,24;TYPE=SNP;DBXREF=dbSNP:rs4668909,g1000:0.360623,esp5400:0.522406,ExAC:0.547,MutationTaster:0; 2 15614404 chr2:SNP:104 T C 385 . DP=30;DP4=7,3,12,8;AD=10,20;TYPE=SNP;DBXREF=dbSNP:rs13014906,g1000:0.519369,esp5400:0.643707,ExAC:0.602; 2 15615704 chr2:SNP:105 T C 229 low_coverage;off_target DP=19;DP4=7,1,11,0;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs35237017,g1000:0.360623; 2 15615910 chr2:SNP:106 A G 876 . DP=98;DP4=26,26,19,27;AD=52,46;TYPE=SNP;DBXREF=dbSNP:rs1990754,g1000:0.492812,esp5400:0.634783,ExAC:0.591; 2 15616013 chr2:SNP:107 C G 376 . DP=44;DP4=10,13,8,13;AD=23,21;TYPE=SNP;DBXREF=dbSNP:rs1990755,g1000:0.492812,esp5400:0.632181,ExAC:0.589; 2 15616030 chr2:SNP:108 C T 404 off_target DP=45;DP4=8,16,8,13;AD=24,21;TYPE=SNP;DBXREF=dbSNP:rs1990756,g1000:0.492013,esp5400:0.632577,ExAC:0.586; 2 15618339 chr2:SNP:109 G A 325 . DP=29;DP4=7,6,12,4;AD=13,16;TYPE=SNP;DBXREF=dbSNP:rs1125534,g1000:0.527556,esp5400:0.651357,ExAC:0.603; 2 15674686 chr2:SNP:110 T C 465 . DP=81;DP4=33,21,13,13;AD=54,26;TYPE=SNP;DBXREF=dbSNP:rs13029846,g1000:0.389177,esp5400:0.548336,ExAC:0.555,MutationTaster:0.054; 2 15676686 chr2:SNP:111 G A 173 low_coverage;off_target DP=8;DP4=1,0,4,3;AD=1,7;TYPE=SNP;DBXREF=dbSNP:rs10208972,g1000:0.538339,esp5400:0.665086,ExAC:0.607; 2 15694164 chr2:INDEL:9 T TA 182 off_target DP=31;DP4=13,6,5,6;AD=19,11;TYPE=INDEL;DBXREF=dbSNP:rs34789730,g1000:0.538538,ExAC:0.606; 2 18112473 chr2:SNP:112 G A 2867 . DP=114;DP4=0,0,65,49;AD=0,114;TYPE=SNP;DBXREF=dbSNP:rs4240213,g1000:0.941094,esp5400:0.928146,ExAC:0.963; 2 18745466 chr2:SNP:113 C T 275 off_target DP=33;DP4=2,17,0,14;AD=19,14;TYPE=SNP;DBXREF=dbSNP:rs74349222,g1000:0.0704872; 2 18757501 chr2:SNP:114 G C 1405 . DP=148;DP4=40,35,37,36;AD=75,73;TYPE=SNP;DBXREF=dbSNP:rs3902946,g1000:0.314297,esp5400:0.337609,ExAC:0.249,MutationTaster:1; 2 18758287 chr2:SNP:115 C T 115 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs116178355,g1000:0.00858626; 2 18768850 chr2:SNP:116 A G 270 . DP=41;DP4=10,15,7,9;AD=25,16;TYPE=SNP;DBXREF=dbSNP:rs16985306,g1000:0.31849,esp5400:0.336959,ExAC:0.25; 2 20130145 chr2:SNP:117 T G 158 low_coverage;off_target DP=12;DP4=5,0,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs28502265,g1000:0.142971,esp5400:0.095371,ExAC:0.115; 2 20131079 chr2:SNP:118 T C 868 . DP=92;DP4=23,24,21,24;AD=47,45;TYPE=SNP;DBXREF=dbSNP:rs1191778,g1000:0.232428,esp5400:0.315021,ExAC:0.332,clinvar:rs1191778|2,MutationTaster:1; 2 20131184 chr2:SNP:119 C A 1662 off_target DP=68;DP4=0,0,33,35;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs1191779,g1000:0.964856,esp5400:0.965972,ExAC:0.988,clinvar:rs1191779|2; 2 20135283 chr2:SNP:120 T C 252 . DP=32;DP4=6,13,5,8;AD=19,13;TYPE=SNP;DBXREF=dbSNP:rs6741091,g1000:0.510783,esp5400:0.434189,ExAC:0.473,clinvar:rs6741091|2; 2 20173255 chr2:SNP:121 A C 218 low_coverage;off_target DP=15;DP4=5,0,10,0;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs10153717,g1000:0.73143; 2 20189015 chr2:SNP:122 T C 246 low_coverage DP=15;DP4=1,3,3,8;AD=4,11;TYPE=SNP;DBXREF=dbSNP:rs1060742,g1000:0.11861,esp5400:0.06609,ExAC:0.107,MutationTaster:1; 2 20189089 chr2:SNP:123 C T 118 low_coverage;off_target DP=6;DP4=0,1,0,5;AD=1,5;TYPE=SNP;DBXREF=dbSNP:rs3731663,g1000:0.621605,esp5400:0.574735,ExAC:0.547,clinvar:rs3731663|2; 2 20194036 chr2:SNP:124 G C 389 off_target DP=47;DP4=21,6,14,6;AD=27,20;TYPE=SNP;DBXREF=dbSNP:rs3820949,g1000:0.509385,esp5400:0.424985,ExAC:0.461,clinvar:rs3820949|2; 2 20201922 chr2:SNP:125 T C 659 off_target DP=69;DP4=8,26,11,24;AD=34,35;TYPE=SNP;DBXREF=dbSNP:rs55977150,g1000:0.166733; 2 20202930 chr2:SNP:126 G A 1030 . DP=101;DP4=33,17,38,13;AD=50,51;TYPE=SNP;DBXREF=dbSNP:rs77245812,g1000:0.0139776,esp5400:0.01067,ExAC:0.016,clinvar:rs77245812|255,MutationTaster:1; 2 20205680 chr2:SNP:127 C T 674 . DP=82;DP4=31,15,25,11;AD=46,36;TYPE=SNP;DBXREF=dbSNP:rs28401180,g1000:0.524361,esp5400:0.435616,ExAC:0.471,clinvar:rs28401180|2; 2 20205848 chr2:SNP:128 G A 1584 . DP=158;DP4=29,50,30,49;AD=79,79;TYPE=SNP;DBXREF=dbSNP:rs28598872,g1000:0.52476,esp5400:0.441679,ExAC:0.475,clinvar:rs28598872|2; 2 20823612 chr2:SNP:129 A G 857 off_target DP=34;DP4=0,0,28,6;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs13030108,g1000:0.794129,esp5400:0.746878,ExAC:0.782; 2 20823724 chr2:SNP:130 T C 2004 . DP=82;DP4=0,0,42,40;AD=0,82;TYPE=SNP;DBXREF=dbSNP:rs6531248,g1000:0.996206,esp5400:0.992935,ExAC:0.998,MutationTaster:0.992; 2 20823850 chr2:SNP:131 T C 363 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6733419,g1000:0.996206; 2 20823858 chr2:SNP:132 C T 180 low_coverage;off_target DP=16;DP4=0,7,0,9;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs2305459,g1000:0.238419; 2 20824498 chr2:SNP:133 C T 126 . DP=21;DP4=12,2,7,0;AD=14,7;TYPE=SNP;DBXREF=dbSNP:rs2305458,g1000:0.381989,esp5400:0.491448,ExAC:0.481,MutationTaster:0; 2 20824559 chr2:SNP:134 C T 222 . DP=21;DP4=6,4,8,3;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs2305457,g1000:0.275559,esp5400:0.194553,ExAC:0.291,MutationTaster:0; 2 20824658 chr2:SNP:135 G A 273 . DP=26;DP4=2,10,2,12;AD=12,14;TYPE=SNP;DBXREF=dbSNP:rs10199441,g1000:0.424121,esp5400:0.302844,ExAC:0.354; 2 20824691 chr2:SNP:136 C T 186 off_target DP=21;DP4=3,9,0,9;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs17663045,g1000:0.180711,esp5400:0.249675,ExAC:0.249; 2 20824708 chr2:SNP:137 T C 288 low_coverage;off_target DP=16;DP4=0,4,1,11;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs10191266,g1000:0.473642; 2 20838318 chr2:SNP:138 G A 791 . DP=76;DP4=17,19,17,23;AD=36,40;TYPE=SNP;DBXREF=dbSNP:rs3796064,g1000:0.359026,esp5400:0.248187,ExAC:0.316; 2 20838560 chr2:SNP:139 A G 328 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7596314,g1000:0.996406; 2 20845041 chr2:SNP:140 G A 712 off_target DP=54;DP4=18,2,28,6;AD=20,34;TYPE=SNP;DBXREF=dbSNP:rs138301449,g1000:0.0121805; 2 20845273 chr2:SNP:141 G A 1360 . DP=54;DP4=0,0,13,41;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs2304423,g1000:0.746006,esp5400:0.686187,ExAC:0.697; 2 20845413 chr2:SNP:142 C G 134 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2304424,g1000:0.121206; 2 21225281 chr2:SNP:143 C T 1279 . DP=54;DP4=1,0,29,24;AD=1,53;TYPE=SNP;DBXREF=dbSNP:rs1042034,g1000:0.629593,esp5400:0.801918,ExAC:0.703,clinvar:rs1042034|255|2,MutationTaster:0; 2 21232195 chr2:SNP:144 G A 2315 . DP=92;DP4=0,0,39,53;AD=0,92;TYPE=SNP;DBXREF=dbSNP:rs693,g1000:0.250998,esp5400:0.408626,ExAC:0.39,clinvar:rs693|255; 2 21232803 chr2:SNP:145 T C 3128 . DP=130;DP4=0,0,62,67;AD=0,129;TYPE=SNP;DBXREF=dbSNP:rs584542,g1000:0.986222,esp5400:0.980944,ExAC:0.995,MutationTaster:0; 2 21232804 chr2:SNP:146 G A 10000 . DP=131;DP4=0,0,60,71;AD=0,131;TYPE=SNP;DBXREF=dbSNP:rs1041968,g1000:0.249201,esp5400:0.382413,ExAC:0.389,clinvar:rs1041968|255; 2 21235475 chr2:SNP:147 T C 983 . DP=39;DP4=0,0,10,29;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs568413,g1000:1,esp5400:0.999628,ExAC:1,MutationTaster:0; 2 21236482 chr2:SNP:148 A G 253 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs488329,g1000:0.991014; 2 21251040 chr2:SNP:149 T G 530 off_target DP=21;DP4=0,0,6,15;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs570877,g1000:0.874002; 2 21260136 chr2:SNP:150 G A 179 . DP=29;DP4=6,13,2,8;AD=19,10;TYPE=SNP;DBXREF=dbSNP:rs1800478,g1000:0.0309505,esp5400:0.036717,ExAC:0.014; 2 21265141 chr2:SNP:151 C A 128 low_coverage;off_target DP=10;DP4=3,1,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs661665,g1000:0.563299; 2 24300563 chr2:SNP:152 T C 305 . DP=52;DP4=15,19,9,9;AD=34,18;TYPE=SNP;DBXREF=dbSNP:rs10209238,g1000:0.0940495,esp5400:0.1161,ExAC:0.124,MutationTaster:0; 2 24300639 chr2:SNP:153 A G 490 . DP=27;DP4=2,4,5,16;AD=6,21;TYPE=SNP;DBXREF=dbSNP:rs200330465,esp5400:0.000279,ExAC:0.0002636; 2 24307250 chr2:SNP:154 G A 225 low_coverage;off_target DP=15;DP4=2,3,0,10;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs36207095; 2 24426534 chr2:SNP:155 A G 1204 . DP=107;DP4=25,22,38,22;AD=47,60;TYPE=SNP;DBXREF=dbSNP:rs61754183,g1000:0.0285543,esp5400:0.024637,ExAC:0.02; 2 24427044 chr2:SNP:156 C T 173 low_coverage;off_target DP=16;DP4=7,1,8,0;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs115226564,g1000:0.0261581,ExAC:0.02; 2 24432211 chr2:SNP:157 C T 378 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2303293,g1000:0.856829; 2 24432620 chr2:SNP:158 A G 239 off_target DP=21;DP4=6,3,11,1;AD=9,12;TYPE=SNP;DBXREF=dbSNP:rs2303294,g1000:0.676917; 2 24432667 chr2:SNP:159 C G 1271 off_target DP=49;DP4=0,0,37,12;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs2303295,g1000:0.859625,esp5400:0.839004,ExAC:0.898; 2 24440997 chr2:SNP:160 A T 131 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs2551183,g1000:0.96905; 2 24444065 chr2:SNP:161 G A 217 low_coverage;off_target DP=19;DP4=0,9,0,10;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs138886021,g1000:0.00159744; 2 24475205 chr2:SNP:162 T C 905 . DP=37;DP4=0,0,26,11;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs4450560,g1000:0.998203,esp5400:0.998419,ExAC:0.998; 2 24484150 chr2:SNP:163 T C 490 off_target DP=59;DP4=5,27,6,20;AD=32,26;TYPE=SNP;DBXREF=dbSNP:rs4665680,g1000:0.970847,esp5400:0.976093,ExAC:0.978; 2 24518796 chr2:SNP:164 C T 133 low_coverage;off_target DP=15;DP4=0,8,0,7;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs4233705,g1000:0.973243; 2 24521493 chr2:SNP:165 C T 277 off_target DP=29;DP4=14,0,13,2;AD=14,15;TYPE=SNP;DBXREF=dbSNP:rs7559133,g1000:0.973243,esp5400:0.976576,ExAC:0.979; 2 24521766 chr2:SNP:166 C T 455 off_target DP=37;DP4=2,12,2,20;AD=14,22;TYPE=SNP;DBXREF=dbSNP:rs6707600,g1000:0.971446; 2 24896389 chr2:SNP:167 T G 173 off_target DP=24;DP4=6,9,3,6;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs4665712,g1000:0.583267; 2 24905684 chr2:INDEL:10 C CA 731 off_target DP=29;DP4=0,0,29,0;AD=0,29;TYPE=INDEL;DBXREF=dbSNP:rs55860996,g1000:0.938698; 2 24905927 chr2:SNP:168 G C 1612 . DP=64;DP4=0,0,27,37;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs11125744,g1000:0.80651,esp5400:0.780628,ExAC:0.869; 2 24933592 chr2:INDEL:11 ATT AT 220 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=INDEL;DBXREF=dbSNP:rs10716492,g1000:0.715855; 2 24933689 chr2:SNP:169 A C 249 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs7593430,g1000:0.834465; 2 24952740 chr2:INDEL:12 C CT 1277 off_target DP=74;DP4=4,6,6,54;AD=10,60;TYPE=INDEL;DBXREF=dbSNP:rs11439247,g1000:0.906949; 2 24962252 chr2:SNP:170 G A 147 off_target DP=22;DP4=10,4,8,0;AD=14,8;TYPE=SNP;DBXREF=dbSNP:rs3820933,g1000:0.102636,esp5400:0.146867,ExAC:0.164; 2 24974945 chr2:SNP:171 T G 1788 . DP=71;DP4=0,0,39,32;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs11125763,g1000:0.836062,esp5400:0.814371,ExAC:0.878; 2 25046090 chr2:SNP:172 T C 650 . DP=81;DP4=26,18,23,13;AD=44,36;TYPE=SNP;DBXREF=dbSNP:rs1127568,g1000:0.691294,esp5400:0.624373,ExAC:0.68; 2 25046311 chr2:SNP:173 A G 131 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs571177568; 2 25047408 chr2:SNP:174 A G 864 . DP=64;DP4=3,21,10,30;AD=24,40;TYPE=SNP;DBXREF=dbSNP:rs7604576,g1000:0.521565,esp5400:0.446644,ExAC:0.537; 2 25048847 chr2:SNP:175 A G 170 low_coverage;off_target DP=15;DP4=7,0,7,1;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs2289090,g1000:0.659744; 2 25050977 chr2:SNP:176 T C 1314 . DP=155;DP4=36,51,31,37;AD=87,68;TYPE=SNP;DBXREF=dbSNP:rs7566416,g1000:0.659545,esp5400:0.589608,ExAC:0.671; 2 25057263 chr2:SNP:177 G A 147 low_coverage;off_target DP=19;DP4=11,0,7,1;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs2278485,g1000:0.412141; 2 25057298 chr2:SNP:178 C G 148 low_coverage;off_target DP=12;DP4=0,5,6,1;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs2278486,g1000:0.123602; 2 25059638 chr2:SNP:179 G C 105 low_coverage;off_target DP=9;DP4=3,1,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs4665733,g1000:0.592652; 2 25061270 chr2:INDEL:13 GGGGTGGGGT G 315 off_target DP=23;DP4=9,0,14,0;AD=9,14;TYPE=INDEL;DBXREF=dbSNP:rs145368937,g1000:0.210463; 2 25062634 chr2:SNP:180 A G 960 off_target DP=37;DP4=0,0,37,0;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs11125810,g1000:0.830072; 2 25064193 chr2:SNP:181 G A 950 . DP=93;DP4=27,19,21,26;AD=46,47;TYPE=SNP;DBXREF=dbSNP:rs2241759,g1000:0.510583,esp5400:0.441685,ExAC:0.478; 2 25463483 chr2:SNP:182 G A 201 off_target DP=26;DP4=12,3,7,4;AD=15,11;TYPE=SNP;DBXREF=dbSNP:rs2289195,g1000:0.359026,esp5400:0.40184,ExAC:0.406; 2 25466888 chr2:SNP:183 G T 508 off_target DP=63;DP4=18,17,17,11;AD=35,28;TYPE=SNP;DBXREF=dbSNP:rs2289093,g1000:0.60024,esp5400:0.678191,ExAC:0.657; 2 25469502 chr2:SNP:184 C T 1257 . DP=139;DP4=42,29,42,26;AD=71,68;TYPE=SNP;DBXREF=dbSNP:rs2276598,g1000:0.223842,esp5400:0.20642,ExAC:0.188; 2 25469913 chr2:SNP:185 C T 679 . DP=79;DP4=24,18,22,15;AD=42,37;TYPE=SNP;DBXREF=dbSNP:rs2276599,g1000:0.614018,esp5400:0.684607,ExAC:0.707; 2 25536827 chr2:SNP:186 G A 740 . DP=83;DP4=25,18,23,17;AD=43,40;TYPE=SNP;DBXREF=dbSNP:rs41284843,g1000:0.0948482,esp5400:0.073742,ExAC:0.058; 2 26413917 chr2:SNP:187 C T 190 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs7260,g1000:0.78754; 2 26415429 chr2:SNP:188 A G 368 low_coverage;off_target DP=16;DP4=0,0,2,14;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs5001914,g1000:0.859425; 2 26417533 chr2:SNP:189 C A 756 off_target DP=30;DP4=0,0,8,22;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs1865324,g1000:0.851837,esp5400:0.830638,ExAC:0.794; 2 26420708 chr2:SNP:190 T G 286 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs13387855,g1000:0.852835; 2 26437255 chr2:SNP:191 G C 236 off_target DP=25;DP4=12,1,11,1;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs113877517,g1000:0.0153754; 2 26454996 chr2:SNP:192 A G 504 off_target DP=20;DP4=0,0,16,4;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs7593175,g1000:0.458067,esp5400:0.649749,ExAC:0.596; 2 26467666 chr2:SNP:193 G A 208 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs3806516,g1000:0.457268; 2 26476977 chr2:SNP:194 A G 286 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs10201087,g1000:0.684904; 2 26477125 chr2:INDEL:14 G GACT 1232 . DP=55;DP4=4,0,38,11;AD=4,49;TYPE=INDEL;DBXREF=dbSNP:rs147970487,g1000:0.709465,ExAC:0.832,clinvar:rs3839049|; 2 26512957 chr2:SNP:195 G C 353 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs1056471,g1000:0.711062; 2 26699126 chr2:SNP:196 C G 881 . DP=80;DP4=17,19,20,24;AD=36,44;TYPE=SNP;DBXREF=dbSNP:rs4335905,g1000:0.707867,esp5400:0.531285,ExAC:0.559,clinvar:rs4335905|2|2; 2 26699855 chr2:SNP:197 G C 1038 . DP=111;DP4=36,21,41,13;AD=57,54;TYPE=SNP;DBXREF=dbSNP:rs2272069,g1000:0.501597,esp5400:0.34211,ExAC:0.457,clinvar:rs2272069|2|2; 2 26700248 chr2:SNP:198 C T 455 off_target DP=37;DP4=5,10,15,7;AD=15,22;TYPE=SNP;DBXREF=dbSNP:rs56284635,g1000:0.0415335,esp5400:0.065782,ExAC:0.068; 2 26700700 chr2:SNP:199 G A 704 . DP=71;DP4=14,21,15,21;AD=35,36;TYPE=SNP;DBXREF=dbSNP:rs4665855,g1000:0.602636,esp5400:0.412804,ExAC:0.472,clinvar:rs4665855|2,MutationTaster:0; 2 26703369 chr2:SNP:200 A G 328 low_coverage;off_target DP=13;DP4=0,0,2,11;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6719195,g1000:0.980431; 2 26717944 chr2:SNP:201 G A 341 . DP=41;DP4=8,15,6,12;AD=23,18;TYPE=SNP;DBXREF=dbSNP:rs55886964,g1000:0.0169728,esp5400:0.025284,ExAC:0.033,clinvar:rs55886964|2; 2 26724725 chr2:SNP:202 T G 506 off_target DP=53;DP4=9,18,11,15;AD=27,26;TYPE=SNP;DBXREF=dbSNP:rs6547079,g1000:0.70028,esp5400:0.629206,ExAC:0.614; 2 26739247 chr2:SNP:203 T A 141 low_coverage;off_target DP=8;DP4=2,0,6,0;AD=2,6;TYPE=SNP;DBXREF=dbSNP:rs7575020,g1000:0.451677,esp5400:0.543139,ExAC:0.517; 2 27532870 chr2:SNP:204 A G 297 off_target DP=49;DP4=16,15,7,11;AD=31,18;TYPE=SNP;DBXREF=dbSNP:rs62130714,g1000:0.270767,esp5400:0.23034,ExAC:0.255; 2 27535311 chr2:INDEL:15 TGG TGGG 591 off_target DP=50;DP4=0,0,26,22;AD=0,48;TYPE=INDEL;DBXREF=dbSNP:rs5830041,g1000:1,ExAC:1; 2 27589810 chr2:SNP:205 T C 630 . DP=25;DP4=0,0,7,18;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs2280737,g1000:0.383387,esp5400:0.417178,ExAC:0.398,clinvar:rs2280737|2; 2 27591804 chr2:SNP:206 T C 329 low_coverage;off_target DP=18;DP4=3,1,13,1;AD=4,14;TYPE=SNP;DBXREF=dbSNP:rs80051818,g1000:0.133786; 2 27592423 chr2:SNP:207 C T 1804 . DP=75;DP4=1,1,21,52;AD=2,73;TYPE=SNP;DBXREF=dbSNP:rs7602534,g1000:0.378395,esp5400:0.416806,ExAC:0.396,clinvar:rs7602534|2; 2 27721971 chr2:SNP:208 T C 580 off_target DP=23;DP4=0,0,15,8;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs813592,g1000:0.45627,esp5400:0.484663,ExAC:0.419; 2 27722416 chr2:SNP:209 G A 479 low_coverage;off_target DP=19;DP4=0,0,1,18;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs1260320,g1000:0.423123; 2 27728777 chr2:SNP:210 C G 429 low_coverage;off_target DP=17;DP4=0,0,1,16;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2293572,g1000:0.371805; 2 27729480 chr2:SNP:211 G A 979 off_target DP=42;DP4=1,1,12,28;AD=2,40;TYPE=SNP;DBXREF=dbSNP:rs2293571,g1000:0.371805,esp5400:0.383807,ExAC:0.393; 2 27730940 chr2:SNP:212 T C 933 . DP=37;DP4=0,0,28,9;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs1260326,g1000:0.706669,esp5400:0.678751,ExAC:0.642,clinvar:rs1260326|255,MutationTaster:0.733; 2 27731212 chr2:SNP:213 T C 292 off_target DP=30;DP4=4,12,0,14;AD=16,14;TYPE=SNP;DBXREF=dbSNP:rs3817588,g1000:0.180112; 2 27741633 chr2:SNP:214 C G 103 low_coverage;off_target DP=14;DP4=6,2,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs8179236,g1000:0.0211661,esp5400:0.033092,ExAC:0.042; 2 29287708 chr2:SNP:215 C T 209 low_coverage;off_target DP=17;DP4=5,2,10,0;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs10182566,g1000:0.327077,esp5400:0.28036,ExAC:0.266; 2 29287926 chr2:INDEL:16 C CGCT 215 . DP=46;DP4=14,19,4,8;AD=33,12;TYPE=INDEL;DBXREF=dbSNP:rs139768554,g1000:0.373602,ExAC:0.147; 2 29295016 chr2:SNP:216 A G 2418 . DP=254;DP4=82,43,83,43;AD=125,126;TYPE=SNP;DBXREF=dbSNP:rs10200693,g1000:0.333866,esp5400:0.30396,ExAC:0.269,clinvar:rs10200693|2; 2 29295389 chr2:SNP:217 G A 857 . DP=93;DP4=19,28,16,30;AD=47,46;TYPE=SNP;DBXREF=dbSNP:rs10166913,g1000:0.227236,esp5400:0.154681,ExAC:0.104,MutationTaster:0; 2 29295676 chr2:SNP:218 G A 1732 . DP=169;DP4=41,42,35,51;AD=83,86;TYPE=SNP;DBXREF=dbSNP:rs13385188,g1000:0.331669,esp5400:0.303689,ExAC:0.268; 2 29295866 chr2:SNP:219 T C 521 . DP=58;DP4=13,17,9,19;AD=30,28;TYPE=SNP;DBXREF=dbSNP:rs17007544,g1000:0.104233,esp5400:0.041948,ExAC:0.066,MutationTaster:0; 2 29416572 chr2:SNP:220 T C 612 . DP=25;DP4=0,0,1,24;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs1670283,g1000:0.992212,esp5400:0.989031,ExAC:0.997,clinvar:rs1670283|2,MutationTaster:0; 2 29419413 chr2:SNP:221 T C 227 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1728826,g1000:0.986022; 2 29419591 chr2:SNP:222 G T 1115 off_target DP=43;DP4=0,0,15,28;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs1670284,g1000:0.420727,esp5400:0.547128,ExAC:0.528; 2 29446202 chr2:SNP:223 G A 2254 . DP=93;DP4=2,0,55,36;AD=2,91;TYPE=SNP;DBXREF=dbSNP:rs4622670,g1000:0.176518,esp5400:0.267615,ExAC:0.289,clinvar:rs4622670|2; 2 29455016 chr2:SNP:224 C T 227 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs12714270,g1000:0.489217; 2 29455267 chr2:SNP:225 A G 2315 . DP=92;DP4=0,0,42,50;AD=0,92;TYPE=SNP;DBXREF=dbSNP:rs2256740,g1000:0.5,esp5400:0.660067,ExAC:0.612,clinvar:rs2256740|2; 2 29498210 chr2:SNP:226 A G 571 off_target DP=22;DP4=0,0,18,4;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs4589708,g1000:0.851438; 2 29541104 chr2:SNP:227 C T 1833 off_target DP=75;DP4=0,0,46,29;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs2276549,g1000:0.584665; 2 29543663 chr2:SNP:228 T C 1033 . DP=41;DP4=0,0,25,16;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs2293564,g1000:0.776558,esp5400:0.788622,ExAC:0.872,clinvar:rs2293564|2; 2 29917940 chr2:SNP:229 C G 191 low_coverage;off_target DP=19;DP4=0,10,0,9;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs2256376,g1000:0.607628; 2 29940529 chr2:SNP:230 A T 644 . DP=66;DP4=15,17,18,15;AD=32,33;TYPE=SNP;DBXREF=dbSNP:rs2246745,g1000:0.589257,esp5400:0.624558,ExAC:0.733,clinvar:rs2246745|2; 2 30143499 chr2:SNP:231 G C 429 low_coverage DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs4358080,g1000:0.89377,esp5400:0.907077,ExAC:0.878,clinvar:rs4358080|2; 2 30976058 chr2:SNP:232 C T 547 . DP=56;DP4=12,16,10,18;AD=28,28;TYPE=SNP;DBXREF=dbSNP:rs2926304,g1000:0.383786,esp5400:0.325368,ExAC:0.435; 2 30977073 chr2:SNP:233 G A 125 off_target DP=25;DP4=16,2,7,0;AD=18,7;TYPE=SNP;DBXREF=dbSNP:rs485100,g1000:0.831869; 2 30980940 chr2:SNP:234 C T 768 . DP=76;DP4=20,18,24,14;AD=38,38;TYPE=SNP;DBXREF=dbSNP:rs508405,g1000:0.790136,esp5400:0.754752,ExAC:0.731,MutationTaster:0; 2 30986989 chr2:SNP:235 G T 580 . DP=23;DP4=0,0,20,3;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs579016,g1000:0.871406,esp5400:0.878902,ExAC:0.869; 2 31000370 chr2:SNP:236 G C 168 off_target DP=27;DP4=13,4,6,4;AD=17,10;TYPE=SNP;DBXREF=dbSNP:rs6548033,g1000:0.202875,esp5400:0.202845; 2 31009876 chr2:SNP:237 T C 701 off_target DP=27;DP4=0,0,27,0;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs1915126,g1000:0.944089; 2 31009977 chr2:SNP:238 G C 1540 off_target DP=63;DP4=0,0,52,11;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs1915125,g1000:0.915935,esp5400:0.869578,ExAC:0.844; 2 31010212 chr2:SNP:239 C T 592 off_target DP=87;DP4=19,35,10,23;AD=54,33;TYPE=SNP;DBXREF=dbSNP:rs13021213,g1000:0.155152,esp5400:0.138161,ExAC:0.153; 2 31567743 chr2:SNP:240 T C 260 low_coverage;off_target DP=10;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs566224,g1000:0.996406; 2 31570376 chr2:SNP:241 T C 2569 off_target DP=101;DP4=1,0,54,46;AD=1,100;TYPE=SNP;DBXREF=dbSNP:rs1366813,g1000:0.777356,esp5400:0.752649,ExAC:0.778,clinvar:rs1366813|255; 2 31570626 chr2:SNP:242 C T 374 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs4952083,g1000:0.796725; 2 31570631 chr2:SNP:243 A G 343 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs4952084,g1000:0.797125; 2 31571241 chr2:SNP:244 G C 857 off_target DP=34;DP4=0,0,17,17;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs13415401,g1000:0.768371,esp5400:0.744376,ExAC:0.774,clinvar:rs13415401|2; 2 31571786 chr2:SNP:245 A G 1662 . DP=68;DP4=0,0,36,32;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs1884725,g1000:0.79992,esp5400:0.773006,ExAC:0.786,clinvar:rs1884725|2; 2 31587235 chr2:SNP:246 G A 337 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1018505,g1000:0.770168; 2 31588288 chr2:SNP:247 T A 1345 off_target DP=55;DP4=0,0,26,29;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs2365842,g1000:0.662141,esp5400:0.62995,ExAC:0.709; 2 31589847 chr2:SNP:248 G A 733 . DP=70;DP4=9,24,14,23;AD=33,37;TYPE=SNP;DBXREF=dbSNP:rs2295475,g1000:0.270168,esp5400:0.231549,ExAC:0.304,clinvar:rs2295475|2; 2 31590785 chr2:SNP:249 C G 128 low_coverage;off_target DP=9;DP4=1,2,5,1;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs761926,g1000:0.273163,esp5400:0.226808,ExAC:0.303; 2 31600146 chr2:SNP:250 T C 491 off_target DP=21;DP4=0,1,1,19;AD=1,20;TYPE=SNP;DBXREF=dbSNP:rs10187719,g1000:0.750799,esp5400:0.736475,ExAC:0.731; 2 31609448 chr2:SNP:251 A C 2039 off_target DP=81;DP4=0,0,36,45;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs477626,g1000:1,ExAC:1; 2 31621598 chr2:SNP:252 T C 655 off_target DP=26;DP4=0,0,3,23;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs10175754,g1000:0.124002,esp5400:0.159788,ExAC:0.133; 2 31626045 chr2:SNP:253 G C 217 off_target DP=33;DP4=2,19,1,11;AD=21,12;TYPE=SNP;DBXREF=dbSNP:rs1346644,g1000:0.130591,esp5400:0.14287,ExAC:0.13; 2 31628705 chr2:SNP:254 T G 247 off_target DP=30;DP4=17,0,11,2;AD=17,13;TYPE=SNP;DBXREF=dbSNP:rs1366814,g1000:0.0898562,esp5400:0.117502; 2 31628955 chr2:SNP:255 C G 308 off_target DP=22;DP4=0,8,0,14;AD=8,14;TYPE=SNP;DBXREF=dbSNP:rs206802,g1000:0.148363; 2 31805675 chr2:SNP:256 A G 331 off_target DP=35;DP4=19,0,16,0;AD=19,16;TYPE=SNP;DBXREF=dbSNP:rs522638,g1000:0.642372,esp5400:0.700483,ExAC:0.584,clinvar:rs522638|1|2; 2 31805706 chr2:SNP:257 G C 406 . DP=39;DP4=17,1,21,0;AD=18,21;TYPE=SNP;DBXREF=dbSNP:rs523349,g1000:0.652157,esp5400:0.725287,ExAC:0.637,clinvar:rs523349|1|2; 2 31805880 chr2:INDEL:17 AGG AGGG 1357 . DP=122;DP4=2,6,41,73;AD=8,114;TYPE=INDEL;DBXREF=dbSNP:rs142200057,g1000:1,ExAC:1; 2 31806031 chr2:SNP:258 C G 161 low_coverage;off_target DP=10;DP4=0,3,0,7;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs632148,g1000:0.640375,clinvar:rs632148|1; 2 32314473 chr2:SNP:259 A T 373 off_target DP=20;DP4=2,1,16,1;AD=3,17;TYPE=SNP;DBXREF=dbSNP:rs469305,g1000:0.499002; 2 32324072 chr2:SNP:260 T C 283 off_target DP=24;DP4=3,8,0,13;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs7566162,g1000:0.483427; 2 32339561 chr2:SNP:261 C T 497 off_target DP=26;DP4=5,0,21,0;AD=5,21;TYPE=SNP;DBXREF=dbSNP:rs11691939,g1000:0.341653; 2 32341399 chr2:SNP:262 A G 210 low_coverage;off_target DP=19;DP4=1,8,0,10;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs12617289,g1000:0.493011; 2 32341408 chr2:SNP:263 A G 177 low_coverage;off_target DP=13;DP4=0,5,0,8;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs12617290,g1000:0.476637; 2 32353324 chr2:SNP:264 A C 149 low_coverage;off_target DP=15;DP4=8,0,7,0;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs2294178,g1000:0.342053; 2 32361482 chr2:INDEL:18 T TC 188 low_coverage;off_target DP=19;DP4=8,0,11,0;AD=8,11;TYPE=INDEL;DBXREF=dbSNP:rs11392886,g1000:0.46266; 2 32362079 chr2:INDEL:19 G GTATA 339 off_target DP=55;DP4=15,20,10,8;AD=35,18;TYPE=INDEL;DBXREF=dbSNP:rs10627985,g1000:0.472444,ExAC:0.389; 2 32369901 chr2:SNP:265 T C 756 off_target DP=30;DP4=0,0,24,6;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2365556,g1000:0.973043; 2 33174072 chr2:SNP:266 A C 292 off_target DP=28;DP4=4,9,5,10;AD=13,15;TYPE=SNP;DBXREF=dbSNP:rs150654,g1000:0.253594,esp5400:0.349413; 2 33335847 chr2:SNP:267 C T 1784 off_target DP=73;DP4=0,0,23,50;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs218226,g1000:0.392372,esp5400:0.381019,ExAC:0.412; 2 33414009 chr2:SNP:268 T A 267 low_coverage;off_target DP=12;DP4=0,1,0,11;AD=1,11;TYPE=SNP;DBXREF=dbSNP:rs3922572,g1000:0.960863; 2 33525382 chr2:SNP:269 A C 360 off_target DP=21;DP4=5,0,16,0;AD=5,16;TYPE=SNP;DBXREF=dbSNP:rs935996,g1000:0.540335; 2 33540138 chr2:SNP:270 G A 126 low_coverage;off_target DP=14;DP4=7,1,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs2276591,g1000:0.550319; 2 33540248 chr2:SNP:271 G A 575 . DP=64;DP4=17,17,17,13;AD=34,30;TYPE=SNP;DBXREF=dbSNP:rs1058840,g1000:0.460264,esp5400:0.556981,ExAC:0.6,MutationTaster:1; 2 33568191 chr2:SNP:272 T C 701 off_target DP=27;DP4=0,0,0,27;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs5024712,g1000:0.587859; 2 33572555 chr2:SNP:273 G A 414 . DP=64;DP4=16,24,9,15;AD=40,24;TYPE=SNP;DBXREF=dbSNP:rs6706620,g1000:0.0902556,esp5400:0.132367,ExAC:0.103; 2 33585796 chr2:SNP:274 T C 2711 . DP=111;DP4=0,0,45,66;AD=0,111;TYPE=SNP;DBXREF=dbSNP:rs4422143,g1000:1,esp5400:0.999907,ExAC:1,MutationTaster:0.145; 2 33614554 chr2:SNP:275 G A 166 low_coverage;off_target DP=9;DP4=0,2,0,7;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs6749614,g1000:0.108826; 2 33623387 chr2:SNP:276 A G 1322 off_target DP=51;DP4=0,0,43,8;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs624060,g1000:0.780751,esp5400:0.789738,ExAC:0.767; 2 33623388 chr2:SNP:277 T C 1374 off_target DP=53;DP4=0,0,45,8;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs624058,g1000:0.780751,esp5400:0.790296,ExAC:0.767; 2 37458711 chr2:SNP:278 G A 277 off_target DP=23;DP4=8,2,12,1;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs3213745,g1000:0.293131,esp5400:0.326641,ExAC:0.351; 2 37480249 chr2:SNP:279 A G 976 off_target DP=58;DP4=10,3,32,13;AD=13,45;TYPE=SNP;DBXREF=dbSNP:rs1056021,g1000:0.278155; 2 37483772 chr2:SNP:280 T A 182 off_target DP=20;DP4=10,0,9,0;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs2465485; 2 37487723 chr2:SNP:281 G A 129 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs10176949,g1000:0.30012; 2 37494591 chr2:SNP:282 A G 291 . DP=37;DP4=12,9,4,12;AD=21,16;TYPE=SNP;DBXREF=dbSNP:rs2302650,g1000:0.191294,esp5400:0.123117,ExAC:0.154,MutationTaster:1; 2 37499406 chr2:SNP:283 C T 128 low_coverage;off_target DP=15;DP4=7,1,5,2;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs2160394,g1000:0.185104; 2 37518045 chr2:SNP:284 G C 500 . DP=53;DP4=15,12,17,8;AD=27,25;TYPE=SNP;DBXREF=dbSNP:rs10177176,g1000:0.30651,esp5400:0.330359,ExAC:0.362; 2 37543371 chr2:SNP:285 A G 774 . DP=88;DP4=26,20,26,16;AD=46,42;TYPE=SNP;DBXREF=dbSNP:rs6544066,g1000:0.441494,esp5400:0.307027,ExAC:0.356; 2 38298139 chr2:SNP:286 T C 832 . DP=85;DP4=9,32,10,34;AD=41,44;TYPE=SNP;DBXREF=dbSNP:rs1800440,g1000:0.0996406,esp5400:0.13311,ExAC:0.155,clinvar:rs1800440|2,MutationTaster:1; 2 38298150 chr2:SNP:287 A G 1784 . DP=73;DP4=0,0,13,60;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs1056837,g1000:0.620208,esp5400:0.453244,ExAC:0.622,clinvar:rs1056837|2; 2 38298203 chr2:SNP:288 C G 1235 . DP=49;DP4=0,0,4,45;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs1056836,g1000:0.614816,esp5400:0.444878,ExAC:0.619,clinvar:rs1056836|2|6|6,MutationTaster:0; 2 38302177 chr2:SNP:289 C A 432 . DP=37;DP4=7,10,6,14;AD=17,20;TYPE=SNP;DBXREF=dbSNP:rs1056827,g1000:0.36242,esp5400:0.338706,ExAC:0.305,clinvar:rs1056827|2,MutationTaster:0; 2 38302390 chr2:SNP:290 G C 374 . DP=43;DP4=14,10,11,8;AD=24,19;TYPE=SNP;DBXREF=dbSNP:rs10012,g1000:0.3748,esp5400:0.349409,ExAC:0.301,clinvar:rs10012|2,MutationTaster:0; 2 38302544 chr2:SNP:291 G A 279 off_target DP=31;DP4=5,12,6,8;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs2617266,g1000:0.294129,esp5400:0.264925,ExAC:0.29,clinvar:rs2617266|2; 2 39214821 chr2:SNP:292 A C 586 off_target DP=52;DP4=5,18,7,22;AD=23,29;TYPE=SNP;DBXREF=dbSNP:rs2290445,g1000:0.902356; 2 39224351 chr2:SNP:293 G T 398 off_target DP=31;DP4=3,9,5,14;AD=12,19;TYPE=SNP;DBXREF=dbSNP:rs1454223,g1000:0.90016,esp5400:0.945221,ExAC:0.919,clinvar:rs1454223|2; 2 39224614 chr2:SNP:294 A G 341 off_target DP=25;DP4=0,9,1,15;AD=9,16;TYPE=SNP;DBXREF=dbSNP:rs540132304,g1000:0.00359425,esp5400:0.001304,ExAC:0.015,clinvar:rs540132304|3; 2 39224637 chr2:SNP:295 G A 177 off_target DP=25;DP4=0,16,0,9;AD=16,9;TYPE=SNP;DBXREF=dbSNP:rs114521469,g1000:0.00658946; 2 39233500 chr2:SNP:296 G A 229 off_target DP=46;DP4=17,15,7,7;AD=32,14;TYPE=SNP;DBXREF=dbSNP:rs7577088,g1000:0.905152,clinvar:rs7577088|2; 2 39234432 chr2:SNP:297 G C 102 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs41280637,g1000:0.00658946; 2 39239572 chr2:SNP:298 G C 164 off_target DP=22;DP4=0,12,1,8;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs3796038,g1000:0.731629; 2 39251375 chr2:INDEL:20 T TCAC 118 low_coverage;off_target DP=18;DP4=1,11,1,5;AD=12,6;TYPE=INDEL;DBXREF=dbSNP:rs56299761,g1000:0.894369; 2 39281730 chr2:SNP:299 G C 173 low_coverage;off_target DP=16;DP4=8,0,8,0;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs997344,g1000:0.891374,esp5400:0.937698,ExAC:0.9,clinvar:rs997344|2|2; 2 40402275 chr2:SNP:300 G A 441 low_coverage;off_target DP=17;DP4=0,0,15,2;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6734847,g1000:0.513179; 2 40404839 chr2:SNP:301 C T 907 off_target DP=36;DP4=0,0,28,8;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs433572,g1000:0.497005; 2 43514036 chr2:SNP:302 G A 241 . DP=39;DP4=16,9,7,7;AD=25,14;TYPE=SNP;DBXREF=dbSNP:rs11900952,g1000:0.485823,esp5400:0.476112,ExAC:0.382; 2 43625404 chr2:SNP:303 C T 346 off_target DP=38;DP4=6,13,8,11;AD=19,19;TYPE=SNP;DBXREF=dbSNP:rs77442683,g1000:0.0706869; 2 43754992 chr2:SNP:304 C T 596 off_target DP=32;DP4=3,3,17,9;AD=6,26;TYPE=SNP;DBXREF=dbSNP:rs1491508,g1000:0.24361,esp5400:0.208799,ExAC:0.201; 2 43776230 chr2:SNP:305 A G 102 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs777571919; 2 43779206 chr2:INDEL:21 GT GTT 227 low_coverage;off_target DP=14;DP4=0,2,4,7;AD=2,11;TYPE=INDEL;DBXREF=dbSNP:rs142593751,g1000:0.052516; 2 43799070 chr2:SNP:306 C T 480 off_target DP=20;DP4=0,1,2,17;AD=1,19;TYPE=SNP;DBXREF=dbSNP:rs3752355,g1000:0.64357; 2 43802261 chr2:SNP:307 C A 685 off_target DP=28;DP4=0,0,4,24;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs970175,g1000:0.9998; 2 43804570 chr2:SNP:308 G A 152 low_coverage;off_target DP=7;DP4=0,1,0,6;AD=1,6;TYPE=SNP;DBXREF=dbSNP:rs72867061,g1000:0.0495208; 2 44066174 chr2:SNP:309 T G 578 off_target DP=45;DP4=16,2,15,12;AD=18,27;TYPE=SNP;DBXREF=dbSNP:rs3806471,g1000:0.489417,esp5400:0.291788,ExAC:0.265,clinvar:rs3806471|2; 2 44071625 chr2:SNP:310 C A 698 off_target DP=65;DP4=14,16,19,16;AD=30,35;TYPE=SNP;DBXREF=dbSNP:rs4148209,g1000:0.434505,esp5400:0.317624,ExAC:0.424; 2 44071639 chr2:SNP:311 C T 642 . DP=66;DP4=18,15,18,14;AD=33,32;TYPE=SNP;DBXREF=dbSNP:rs4148210,g1000:0.515974,esp5400:0.392266,ExAC:0.447; 2 44071743 chr2:SNP:312 A G 651 . DP=56;DP4=12,12,17,15;AD=24,32;TYPE=SNP;DBXREF=dbSNP:rs4148211,g1000:0.434704,esp5400:0.318461,ExAC:0.425,MutationTaster:1; 2 44071833 chr2:SNP:313 A C 146 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs4148212,g1000:0.514976; 2 44071852 chr2:SNP:314 G C 119 low_coverage;off_target DP=17;DP4=0,11,0,6;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs4148213,g1000:0.516174; 2 44079004 chr2:SNP:315 T C 666 off_target DP=51;DP4=1,19,0,31;AD=20,31;TYPE=SNP;DBXREF=dbSNP:rs4148214,g1000:0.683706,esp5400:0.596858,ExAC:0.617; 2 44101538 chr2:SNP:316 C T 1374 . DP=53;DP4=0,0,23,30;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs28517482,g1000:0.764976,esp5400:0.574549,ExAC:0.673; 2 44101649 chr2:INDEL:22 GCCCCCC GCCCCCCCCC 188 low_coverage;off_target DP=19;DP4=4,8,3,4;AD=12,7;TYPE=INDEL;DBXREF=dbSNP:rs3841852,g1000:0.124201,ExAC:0.188; 2 44102634 chr2:SNP:317 C T 144 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs4148222,g1000:0.333666; 2 44104925 chr2:SNP:318 T C 630 . DP=62;DP4=17,13,14,18;AD=30,32;TYPE=SNP;DBXREF=dbSNP:rs6544718,g1000:0.922923,esp5400:0.838632,ExAC:0.842,MutationTaster:0; 2 44116836 chr2:SNP:319 C T 366 off_target DP=41;DP4=16,6,14,5;AD=22,19;TYPE=SNP;DBXREF=dbSNP:rs2955280,g1000:0.74381,esp5400:0.598159,ExAC:0.596; 2 44123672 chr2:INDEL:23 TC T 197 off_target DP=24;DP4=12,1,10,1;AD=13,11;TYPE=INDEL;DBXREF=dbSNP:rs3839036,g1000:0.641174; 2 44123759 chr2:SNP:320 G A 775 off_target DP=73;DP4=24,10,30,9;AD=34,39;TYPE=SNP;DBXREF=dbSNP:rs3795859,g1000:0.205072,esp5400:0.080777,ExAC:0.16; 2 44145374 chr2:SNP:321 G T 421 off_target DP=35;DP4=6,8,9,12;AD=14,21;TYPE=SNP;DBXREF=dbSNP:rs7568481,g1000:0.654553,esp5400:0.489031,ExAC:0.499; 2 44152180 chr2:SNP:322 G A 277 off_target DP=33;DP4=11,7,11,4;AD=18,15;TYPE=SNP;DBXREF=dbSNP:rs4952694,g1000:0.751997,esp5400:0.592582,ExAC:0.593; 2 44152406 chr2:SNP:323 G T 235 off_target DP=22;DP4=0,11,0,11;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs4953039,g1000:0.726637; 2 44172444 chr2:SNP:324 A C 136 low_coverage;off_target DP=16;DP4=7,2,5,2;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs28394191,g1000:0.607628,esp5400:0.451097,ExAC:0.495; 2 44173422 chr2:SNP:325 T G 355 off_target DP=38;DP4=10,8,8,12;AD=18,20;TYPE=SNP;DBXREF=dbSNP:rs7594526,g1000:0.635583,esp5400:0.474972,ExAC:0.5; 2 44187829 chr2:SNP:326 A C 133 low_coverage;off_target DP=15;DP4=3,5,0,7;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs10190161,g1000:0.530551; 2 44201376 chr2:SNP:327 T C 651 . DP=63;DP4=20,11,20,12;AD=31,32;TYPE=SNP;DBXREF=dbSNP:rs4953042,g1000:0.255791,esp5400:0.112289,ExAC:0.21,clinvar:rs4953042|3; 2 44209477 chr2:SNP:328 C T 367 . DP=46;DP4=13,14,10,9;AD=27,19;TYPE=SNP;DBXREF=dbSNP:rs6741066,g1000:0.503994,esp5400:0.72527,ExAC:0.624,clinvar:rs6741066|3; 2 44502788 chr2:SNP:329 A C 902 . DP=111;DP4=32,32,24,23;AD=64,47;TYPE=SNP;DBXREF=dbSNP:rs3738985,g1000:0.703474,esp5400:0.781,ExAC:0.732,MutationTaster:0; 2 44569474 chr2:SNP:330 G A 161 low_coverage;off_target DP=10;DP4=3,0,5,2;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs2304769,g1000:0.664337; 2 44571109 chr2:SNP:331 G A 672 off_target DP=65;DP4=13,18,11,23;AD=31,34;TYPE=SNP;DBXREF=dbSNP:rs10514790,g1000:0.0505192,esp5400:0.05069,ExAC:0.058; 2 44573624 chr2:SNP:332 G A 139 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs698763,g1000:0.620607; 2 44586621 chr2:SNP:333 T C 499 off_target DP=47;DP4=17,5,15,10;AD=22,25;TYPE=SNP;DBXREF=dbSNP:rs77060839,g1000:0.0569089,esp5400:0.050846,ExAC:0.063; 2 45171842 chr2:SNP:334 A G 2240 . DP=89;DP4=0,0,38,51;AD=0,89;TYPE=SNP;DBXREF=dbSNP:rs338074,g1000:0.9375,esp5400:0.936136,ExAC:0.917,clinvar:rs338074|2; 2 46602722 chr2:SNP:335 T C 378 low_coverage;off_target DP=15;DP4=0,0,13,2;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs7567582,g1000:0.262181; 2 46603671 chr2:SNP:336 C G 2204 . DP=93;DP4=0,0,50,43;AD=0,93;TYPE=SNP;DBXREF=dbSNP:rs7557402,g1000:0.3125,esp5400:0.427775,ExAC:0.41; 2 46604043 chr2:SNP:337 C T 389 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs11678817,g1000:0.258986; 2 46605954 chr2:SNP:338 G C 710 off_target DP=29;DP4=0,0,7,22;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs7598371,g1000:0.260184,esp5400:0.369468,ExAC:0.389; 2 46608542 chr2:SNP:339 C G 312 low_coverage;off_target DP=12;DP4=0,0,11,1;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs13006131,g1000:0.264177; 2 47600591 chr2:SNP:340 T A 128 low_coverage DP=10;DP4=4,0,4,2;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs114241106,g1000:0.00499201,esp5400:0.006694,ExAC:0.00809,clinvar:rs114241106|2|2; 2 47601106 chr2:SNP:341 T C 1141 . DP=50;DP4=0,1,16,31;AD=1,47;TYPE=SNP;DBXREF=dbSNP:rs1126497,g1000:0.666134,esp5400:0.568786,ExAC:0.52,clinvar:rs1126497|2|2,MutationTaster:0; 2 47607081 chr2:SNP:342 A G 1322 . DP=118;DP4=16,34,23,43;AD=50,66;TYPE=SNP;DBXREF=dbSNP:rs115283528,g1000:0.000798722,esp5400:0.001766,ExAC:0.002059,clinvar:rs115283528|3|2,MutationTaster:0.044; 2 47613553 chr2:SNP:343 A G 202 off_target DP=22;DP4=12,0,10,0;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs188779145,g1000:0.000798722; 2 47656801 chr2:SNP:344 G A 242 off_target DP=26;DP4=14,0,12,0;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs2347794,g1000:0.59365,clinvar:rs2347794|2; 2 47672462 chr2:SNP:345 A G 142 low_coverage;off_target DP=12;DP4=5,0,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs185407582,g1000:0.000998403; 2 47672569 chr2:SNP:346 G A 641 off_target DP=27;DP4=0,0,25,1;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs1981929,g1000:0.794728,clinvar:rs1981929|2; 2 47672951 chr2:SNP:347 A T 112 low_coverage;off_target DP=8;DP4=0,3,0,5;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs572861716,g1000:0.00359425; 2 47690162 chr2:SNP:348 G T 437 . DP=45;DP4=15,7,14,9;AD=22,23;TYPE=SNP;DBXREF=dbSNP:rs187525243,g1000:0.000998403,esp5400:0.001581,ExAC:0.001936,clinvar:rs187525243|3|2|255; 2 47690404 chr2:SNP:349 T C 243 low_coverage;off_target DP=13;DP4=0,3,0,10;AD=3,10;TYPE=SNP;DBXREF=dbSNP:rs3771278,g1000:0.541134; 2 47694020 chr2:SNP:350 A G 123 low_coverage;off_target DP=15;DP4=0,9,0,6;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs180805863,g1000:0.000998403,clinvar:rs180805863|3; 2 47698179 chr2:SNP:351 A G 543 . DP=44;DP4=7,10,14,13;AD=17,27;TYPE=SNP;DBXREF=dbSNP:rs61756467,g1000:0.000998403,esp5400:0.001396,ExAC:0.00192,clinvar:rs61756467|3|3|255; 2 47702533 chr2:SNP:352 A G 115 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs189823450,g1000:0.000998403; 2 47703379 chr2:SNP:353 C T 318 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2059521,g1000:0.999201; 2 48010488 chr2:SNP:354 G A 210 . DP=39;DP4=12,13,5,9;AD=25,14;TYPE=SNP;DBXREF=dbSNP:rs1042821,g1000:0.200879,esp5400:0.181809,ExAC:0.178,clinvar:rs1042821|2|2|2|2|2,MutationTaster:1; 2 48022981 chr2:SNP:355 G T 144 low_coverage;off_target DP=17;DP4=10,0,7,0;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs1800934,g1000:0.224441,esp5400:0.230887,clinvar:rs1800934|2; 2 48032613 chr2:SNP:356 G A 197 low_coverage;off_target DP=15;DP4=6,0,9,0;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs7562367,g1000:0.769569; 2 48032717 chr2:SNP:357 T A 377 off_target DP=37;DP4=17,1,19,0;AD=18,19;TYPE=SNP;DBXREF=dbSNP:rs189436849,g1000:0.00159744,esp5400:0.006515,ExAC:0.005627,clinvar:rs189436849|0|2|3; 2 48032874 chr2:INDEL:24 ACTAT A 211 off_target DP=33;DP4=7,15,2,9;AD=22,11;TYPE=INDEL;DBXREF=dbSNP:rs2234731,g1000:0.762181,ExAC:0.692,clinvar:rs2234731|2|2; 2 48032937 chr2:SNP:358 T C 202 off_target DP=25;DP4=5,10,1,9;AD=15,10;TYPE=SNP;DBXREF=dbSNP:rs3136359,g1000:0.814297,clinvar:rs3136359|2|2; 2 48033551 chr2:SNP:359 C G 172 off_target DP=21;DP4=2,10,3,6;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs3136367,g1000:0.809105,esp5400:0.78347,ExAC:0.742,clinvar:rs3136367|2|2; 2 48915871 chr2:SNP:360 A G 907 . DP=96;DP4=12,37,12,35;AD=49,47;TYPE=SNP;DBXREF=dbSNP:rs11125179,g1000:0.592252,esp5400:0.496375,ExAC:0.602,clinvar:rs11125179|2; 2 48921375 chr2:SNP:361 T C 376 . DP=73;DP4=30,20,13,10;AD=50,23;TYPE=SNP;DBXREF=dbSNP:rs2293275,g1000:0.591054,esp5400:0.490229,ExAC:0.592,clinvar:rs2293275|2,MutationTaster:1; 2 48925691 chr2:SNP:362 C G 119 low_coverage;off_target DP=13;DP4=7,0,6,0;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs11675952,g1000:0.0515176; 2 48925746 chr2:SNP:363 C T 332 low_coverage DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6755901,g1000:0.73742,esp5400:0.851738,ExAC:0.765,clinvar:rs6755901|2; 2 48936006 chr2:SNP:364 G A 125 low_coverage;off_target DP=11;DP4=4,1,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs73928211,g1000:0.0876597; 2 48956431 chr2:SNP:365 T A 377 off_target DP=33;DP4=0,15,0,18;AD=15,18;TYPE=SNP;DBXREF=dbSNP:rs11892719,g1000:0.605232,esp5400:0.563428; 2 48982755 chr2:INDEL:25 G GGCTGCA 307 . DP=61;DP4=26,16,9,8;AD=42,17;TYPE=INDEL;DBXREF=dbSNP:rs376653903,g1000:0.144569,ExAC:0.134; 2 49189921 chr2:SNP:366 C T 560 . DP=52;DP4=21,3,25,3;AD=24,28;TYPE=SNP;DBXREF=dbSNP:rs6166,g1000:0.592652,esp5400:0.555587,ExAC:0.573,clinvar:rs6166|6|255|2,MutationTaster:0; 2 49191041 chr2:SNP:367 C T 357 . DP=39;DP4=6,14,7,12;AD=20,19;TYPE=SNP;DBXREF=dbSNP:rs6165,g1000:0.492212,esp5400:0.451199,ExAC:0.544,clinvar:rs6165|6|2,MutationTaster:0; 2 49244559 chr2:SNP:368 A G 119 low_coverage;off_target DP=9;DP4=2,1,6,0;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs2091787,g1000:0.608027; 2 50692459 chr2:SNP:369 T A 252 low_coverage;off_target DP=10;DP4=0,0,8,2;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs12713101,g1000:0.240615; 2 50692819 chr2:SNP:370 T G 347 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs10168838,g1000:0.899361; 2 50699758 chr2:SNP:371 C T 177 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs2075233,g1000:0.524361; 2 50758657 chr2:SNP:372 T C 374 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2066948,g1000:0.853235; 2 50780219 chr2:SNP:373 T G 124 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs13429627,g1000:0.306909; 2 50858063 chr2:SNP:374 T A 101 low_coverage;off_target DP=12;DP4=7,0,5,0;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs142500254,g1000:0.00579073; 2 50858107 chr2:SNP:375 T A 286 low_coverage;off_target DP=11;DP4=0,0,10,1;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs961405,g1000:0.556909; 2 51254909 chr2:SNP:376 T C 936 . DP=66;DP4=18,4,28,16;AD=22,44;TYPE=SNP;DBXREF=dbSNP:rs200625614,MutationTaster:1; 2 55460605 chr2:SNP:377 A T 759 off_target DP=31;DP4=0,0,3,28;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs6737227,g1000:0.708666,esp5400:0.754781,ExAC:0.735; 2 55461823 chr2:SNP:378 T A 240 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2576722,g1000:0.785543; 2 56094201 chr2:INDEL:26 GAAAA GAAA 178 . DP=69;DP4=19,16,18,15;AD=35,33;TYPE=INDEL;DBXREF=dbSNP:rs200536754,g1000:0.0209665,ExAC:0.029,clinvar:rs200536754|255; 2 56098272 chr2:SNP:379 G A 385 off_target DP=49;DP4=8,21,6,14;AD=29,20;TYPE=SNP;DBXREF=dbSNP:rs45535043,g1000:0.0377396,esp5400:0.055122,ExAC:0.053,clinvar:rs45535043|2; 2 56102019 chr2:SNP:380 T C 126 low_coverage;off_target DP=12;DP4=6,0,5,1;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs55778215,g1000:0.189097; 2 56108692 chr2:SNP:381 T A 129 low_coverage;off_target DP=11;DP4=4,1,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs56237919,g1000:0.0199681; 2 56108882 chr2:SNP:382 T C 115 low_coverage;off_target DP=17;DP4=5,6,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs3748959,g1000:0.229433,esp5400:0.186001,ExAC:0.166,clinvar:rs3748959|2; 2 56144930 chr2:SNP:383 T C 1545 . DP=160;DP4=58,22,54,26;AD=80,80;TYPE=SNP;DBXREF=dbSNP:rs14282,g1000:0.019369,esp5400:0.021565,ExAC:0.028,clinvar:rs14282|2; 2 56145270 chr2:SNP:384 A G 398 off_target DP=58;DP4=13,23,7,15;AD=36,22;TYPE=SNP;DBXREF=dbSNP:rs10496056,g1000:0.0840655; 2 58387000 chr2:SNP:385 C T 473 off_target DP=47;DP4=7,16,3,21;AD=23,24;TYPE=SNP;DBXREF=dbSNP:rs3732136,g1000:0.444688,esp5400:0.389546; 2 58388696 chr2:SNP:386 A G 420 . DP=61;DP4=17,20,12,12;AD=37,24;TYPE=SNP;DBXREF=dbSNP:rs848291,g1000:0.70647,esp5400:0.706993,ExAC:0.648,clinvar:rs848291|2; 2 58390538 chr2:SNP:387 T C 135 low_coverage;off_target DP=19;DP4=9,2,6,2;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs10445895,g1000:0.047524,esp5400:0.078081,ExAC:0.07; 2 58390547 chr2:SNP:388 G A 164 low_coverage;off_target DP=19;DP4=5,4,6,3;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs10445896,g1000:0.120407,esp5400:0.15449,ExAC:0.092; 2 58453930 chr2:SNP:389 A G 190 low_coverage;off_target DP=17;DP4=3,5,4,5;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs79588315,g1000:0.0427316,esp5400:0.074605,ExAC:0.07,clinvar:rs79588315|2; 2 60687959 chr2:SNP:390 A G 3001 . DP=116;DP4=0,0,68,48;AD=0,116;TYPE=SNP;DBXREF=dbSNP:rs7569946,g1000:0.830072,esp5400:0.715349,ExAC:0.697; 2 62052380 chr2:SNP:391 A G 555 . DP=72;DP4=13,29,12,18;AD=42,30;TYPE=SNP;DBXREF=dbSNP:rs3736598,g1000:0.476438,ExAC:0.371; 2 62053279 chr2:SNP:392 T G 724 . DP=72;DP4=13,20,14,24;AD=33,38;TYPE=SNP;DBXREF=dbSNP:rs62148138,g1000:0.111422,ExAC:0.151; 2 62053290 chr2:SNP:393 A G 843 . DP=98;DP4=21,31,20,26;AD=52,46;TYPE=SNP;DBXREF=dbSNP:rs6748320,g1000:0.476038,ExAC:0.34; 2 62053341 chr2:INDEL:27 TAAAAA TAAAA 298 . DP=112;DP4=21,33,25,33;AD=54,58;TYPE=INDEL;DBXREF=dbSNP:rs146249980,g1000:0.116414,ExAC:0.127; 2 62053546 chr2:INDEL:28 CGCT C 958 . DP=93;DP4=21,25,24,22;AD=46,46;TYPE=INDEL;DBXREF=dbSNP:rs72380346,g1000:0.0794728,ExAC:0.146; 2 62063257 chr2:SNP:394 A C 354 off_target DP=32;DP4=5,9,7,11;AD=14,18;TYPE=SNP; 2 62065525 chr2:SNP:395 A G 857 off_target DP=34;DP4=0,0,34,0;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1548322,g1000:0.980032; 2 62065851 chr2:SNP:396 C T 406 off_target DP=54;DP4=9,23,6,16;AD=32,22;TYPE=SNP;DBXREF=dbSNP:rs17513666,g1000:0.118211,esp5400:0.183682,ExAC:0.183; 2 62066927 chr2:SNP:397 A G 10000 . DP=147;DP4=0,0,65,82;AD=0,147;TYPE=SNP;DBXREF=dbSNP:rs4672457,g1000:0.979633,esp5400:0.978736,ExAC:0.976,clinvar:rs4672457|2; 2 62067433 chr2:SNP:398 T C 667 . DP=85;DP4=25,24,18,18;AD=49,36;TYPE=SNP;DBXREF=dbSNP:rs17513722,g1000:0.116414,esp5400:0.187984,ExAC:0.184,MutationTaster:0.323; 2 62081012 chr2:SNP:399 A C 3172 . DP=128;DP4=0,0,84,43;AD=0,127;TYPE=SNP;DBXREF=dbSNP:rs4270331,g1000:0.979433,esp5400:0.977877,ExAC:0.976,clinvar:rs4270331|2; 2 62081217 chr2:SNP:400 A G 1076 . DP=44;DP4=0,0,4,40;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs1881616,g1000:0.979433,esp5400:0.980016,ExAC:0.969; 2 63380809 chr2:SNP:401 G A 534 off_target DP=20;DP4=0,0,5,15;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs7595595,g1000:0.883786; 2 63486429 chr2:SNP:402 C T 214 low_coverage;off_target DP=9;DP4=0,0,5,4;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs992214,g1000:0.763778,esp5400:0.62089,ExAC:0.605,clinvar:rs992214|2; 2 63540523 chr2:SNP:403 A T 973 off_target DP=41;DP4=0,0,19,22;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs1517402,g1000:0.874002; 2 63605430 chr2:SNP:404 A G 227 low_coverage;off_target DP=9;DP4=0,0,8,1;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2292795,g1000:0.873802; 2 63720210 chr2:SNP:405 A G 1101 off_target DP=45;DP4=0,0,4,41;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs7563623,g1000:0.873802; 2 63816672 chr2:SNP:406 C G 378 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs10469944,g1000:0.874601; 2 63822785 chr2:SNP:407 T C 752 off_target DP=29;DP4=0,0,0,29;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs2305157,g1000:0.883387; 2 63826528 chr2:SNP:408 T G 605 off_target DP=24;DP4=0,0,0,24;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs7606045,g1000:0.772963; 2 63833141 chr2:SNP:409 C T 975 . DP=107;DP4=27,29,21,30;AD=56,51;TYPE=SNP;DBXREF=dbSNP:rs774885809,ExAC:0.0001153; 2 65309988 chr2:SNP:410 T C 441 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs1420183,g1000:0.634784; 2 66665146 chr2:SNP:411 T C 530 off_target DP=21;DP4=0,0,2,19;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2280334,g1000:0.565296,esp5400:0.635905; 2 66667186 chr2:SNP:412 C T 441 low_coverage;off_target DP=17;DP4=0,0,3,14;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2271856,g1000:0.530152,ExAC:0.505; 2 68882138 chr2:SNP:413 G T 120 low_coverage DP=11;DP4=3,2,4,2;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs34234285,g1000:0.00539137,esp5400:0.014687,ExAC:0.014; 2 69300093 chr2:SNP:414 G A 202 low_coverage;off_target DP=8;DP4=0,0,5,3;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs548701918,g1000:0.121406,esp5400:0.000309; 2 69300243 chr2:SNP:415 G A 2114 . DP=84;DP4=0,0,39,45;AD=0,84;TYPE=SNP;DBXREF=dbSNP:rs10202939,g1000:0.153155,esp5400:0.115356,ExAC:0.115; 2 69304719 chr2:SNP:416 T C 392 low_coverage;off_target DP=16;DP4=0,0,1,15;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs7424907,g1000:0.157548; 2 69317925 chr2:SNP:417 G A 571 off_target DP=22;DP4=0,0,18,4;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs4854546,g1000:0.942891,esp5400:0.909709; 2 69318129 chr2:SNP:418 T G 352 low_coverage;off_target DP=15;DP4=0,1,2,12;AD=1,14;TYPE=SNP;DBXREF=dbSNP:rs4241348,g1000:0.952276; 2 69573029 chr2:SNP:419 T C 763 . DP=31;DP4=0,0,19,11;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs6722492,g1000:0.647165,esp5400:0.680922,ExAC:0.595,clinvar:rs6722492|2; 2 69583422 chr2:SNP:420 G A 217 low_coverage;off_target DP=10;DP4=1,0,9,0;AD=1,9;TYPE=SNP;DBXREF=dbSNP:rs7579871,g1000:0.647165; 2 69583896 chr2:SNP:421 A G 234 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs13389936,g1000:0.496006; 2 69586293 chr2:SNP:422 A C 171 low_coverage;off_target DP=7;DP4=0,0,6,1;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs6546505,g1000:0.646965; 2 69586370 chr2:SNP:423 A G 1317 off_target DP=54;DP4=2,0,41,11;AD=2,52;TYPE=SNP;DBXREF=dbSNP:rs67760762,g1000:0.24401,esp5400:0.313069,ExAC:0.365,clinvar:rs67760762|2; 2 69614161 chr2:SNP:424 A G 467 low_coverage;off_target DP=18;DP4=0,0,12,6;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs6720415,g1000:0.65655,esp5400:0.690292,ExAC:0.429,clinvar:rs6720415|2; 2 69633382 chr2:SNP:425 A T 493 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs6546513,g1000:0.664736; 2 69659126 chr2:SNP:426 A T 1854 . DP=77;DP4=1,1,39,36;AD=2,75;TYPE=SNP;DBXREF=dbSNP:rs4453725,g1000:0.317093,esp5400:0.381298,ExAC:0.391,clinvar:rs4453725|2,MutationTaster:1; 2 69659402 chr2:SNP:427 T A 245 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs7595167,g1000:0.416334; 2 70187727 chr2:SNP:428 A C 249 low_coverage;off_target DP=16;DP4=2,2,9,2;AD=4,11;TYPE=SNP;DBXREF=dbSNP:rs12464297,g1000:0.388978; 2 70188676 chr2:SNP:429 T C 2896 . DP=117;DP4=0,1,46,70;AD=1,116;TYPE=SNP;DBXREF=dbSNP:rs3796097,g1000:0.698083,esp5400:0.63404,ExAC:0.596,MutationTaster:0; 2 71004368 chr2:SNP:430 A G 245 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs4533493,g1000:0.729233; 2 71004492 chr2:SNP:431 T C 206 . DP=27;DP4=14,2,9,2;AD=16,11;TYPE=SNP;DBXREF=dbSNP:rs56316086,g1000:0.326478,esp5400:0.104091,ExAC:0.242,clinvar:rs56316086|2; 2 71004494 chr2:SNP:432 A T 340 . DP=32;DP4=14,2,13,3;AD=16,16;TYPE=SNP;DBXREF=dbSNP:rs56135050,g1000:0.326478,esp5400:0.115813,ExAC:0.242,clinvar:rs56135050|2; 2 71012604 chr2:SNP:433 G A 1587 . DP=63;DP4=0,0,40,23;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs7566541,g1000:0.797724,esp5400:0.677979,ExAC:0.648; 2 71012734 chr2:SNP:434 C G 2014 . DP=80;DP4=0,0,34,46;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs7566476,g1000:0.762979,esp5400:0.628537,ExAC:0.623,MutationTaster:0; 2 71012946 chr2:SNP:435 C A 277 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs7566700,g1000:0.627196; 2 71017516 chr2:SNP:436 A G 417 off_target DP=33;DP4=9,4,14,6;AD=13,20;TYPE=SNP;DBXREF=dbSNP:rs12713717,g1000:0.421126,esp5400:0.204825,ExAC:0.143; 2 71058184 chr2:SNP:437 C T 330 . DP=36;DP4=10,9,12,5;AD=19,17;TYPE=SNP;DBXREF=dbSNP:rs13421115,g1000:0.162141,esp5400:0.254503,ExAC:0.216; 2 71058226 chr2:SNP:438 C T 416 . DP=50;DP4=17,11,11,11;AD=28,22;TYPE=SNP;DBXREF=dbSNP:rs2080390,g1000:0.13758,esp5400:0.18817,ExAC:0.217; 2 71060936 chr2:SNP:439 G C 682 . DP=62;DP4=9,18,12,23;AD=27,35;TYPE=SNP;DBXREF=dbSNP:rs17718987,g1000:0.132188,esp5400:0.231683,ExAC:0.233,MutationTaster:0; 2 71062833 chr2:INDEL:29 GC GCC 1720 . DP=76;DP4=1,1,35,39;AD=2,74;TYPE=INDEL;DBXREF=dbSNP:rs11450450,g1000:1,ExAC:1; 2 71163086 chr2:SNP:440 T C 204 . DP=31;DP4=14,5,7,5;AD=19,12;TYPE=SNP;DBXREF=dbSNP:rs11681642,g1000:0.36881,esp5400:0.412623,ExAC:0.406,clinvar:rs11681642|2,MutationTaster:0; 2 71163225 chr2:SNP:441 C T 403 off_target DP=40;DP4=6,13,10,11;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs759219,g1000:0.377796,esp5400:0.42071,ExAC:0.407; 2 71185391 chr2:SNP:442 A C 451 off_target DP=38;DP4=7,9,11,11;AD=16,22;TYPE=SNP;DBXREF=dbSNP:rs967063,g1000:0.465455; 2 71185581 chr2:SNP:443 T G 180 off_target DP=28;DP4=16,1,0,11;AD=17,11;TYPE=SNP; 2 71190384 chr2:SNP:444 C T 199 low_coverage DP=18;DP4=4,4,2,8;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs2072462,g1000:0.4375,esp5400:0.354155,ExAC:0.469,clinvar:rs2072462|2; 2 71191777 chr2:SNP:445 C T 164 low_coverage;off_target DP=15;DP4=2,5,5,3;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs2270263,g1000:0.415136; 2 71351403 chr2:SNP:446 C A 559 . DP=43;DP4=15,2,23,3;AD=17,26;TYPE=SNP;DBXREF=dbSNP:rs6748672,g1000:0.201478,esp5400:0.189255,ExAC:0.174,clinvar:rs6748672|2,MutationTaster:0; 2 71747235 chr2:SNP:447 A G 441 off_target DP=46;DP4=17,5,16,8;AD=22,24;TYPE=SNP;DBXREF=dbSNP:rs11675897,g1000:0.65595,esp5400:0.83055; 2 71747432 chr2:SNP:448 G T 536 off_target DP=60;DP4=10,22,10,18;AD=32,28;TYPE=SNP;DBXREF=dbSNP:rs11687223,g1000:0.563698; 2 71747851 chr2:SNP:449 T C 350 off_target DP=23;DP4=4,3,13,3;AD=7,16;TYPE=SNP;DBXREF=dbSNP:rs12713755,g1000:0.65615; 2 71747899 chr2:SNP:450 G A 366 off_target DP=36;DP4=11,6,12,7;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs12713756,g1000:0.367812,esp5400:0.490519,ExAC:0.475,clinvar:rs12713756|2; 2 71755380 chr2:SNP:451 A G 300 off_target DP=38;DP4=16,6,16,0;AD=22,16;TYPE=SNP;DBXREF=dbSNP:rs4852800,g1000:0.65635,esp5400:0.845946,ExAC:0.726,clinvar:rs4852800|2; 2 71762232 chr2:SNP:452 C T 239 off_target DP=35;DP4=12,8,5,9;AD=20,14;TYPE=SNP;DBXREF=dbSNP:rs4852801,g1000:0.457668,esp5400:0.623164,ExAC:0.585,clinvar:rs4852801|2; 2 71762310 chr2:SNP:453 A G 144 off_target DP=27;DP4=11,8,4,4;AD=19,8;TYPE=SNP;DBXREF=dbSNP:rs4852802,g1000:0.53774; 2 71781161 chr2:INDEL:30 GAC G 251 off_target DP=26;DP4=0,14,0,12;AD=14,12;TYPE=INDEL;DBXREF=dbSNP:rs5832058,g1000:0.107029; 2 71795152 chr2:SNP:454 A T 804 . DP=36;DP4=0,0,21,13;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2288355,g1000:0.550519,esp5400:0.718814,ExAC:0.604,clinvar:rs2288355|255; 2 71797712 chr2:SNP:455 G A 391 off_target DP=36;DP4=11,5,10,10;AD=16,20;TYPE=SNP;DBXREF=dbSNP:rs3764971,g1000:0.260583,esp5400:0.175409,ExAC:0.254,clinvar:rs3764971|2; 2 71825677 chr2:SNP:456 C T 126 low_coverage;off_target DP=12;DP4=4,1,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs13421969,g1000:0.0395367,esp5400:0.055122,ExAC:0.035,clinvar:rs13421969|2; 2 71829821 chr2:SNP:457 G T 514 off_target DP=21;DP4=0,0,14,7;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1529408,g1000:0.911142,esp5400:0.959802; 2 71838597 chr2:SNP:458 C A 778 . DP=64;DP4=15,10,19,20;AD=25,39;TYPE=SNP;DBXREF=dbSNP:rs2303606,g1000:0.449481,esp5400:0.472579,ExAC:0.501,clinvar:rs2303606|255; 2 71871039 chr2:SNP:459 A G 1084 off_target DP=43;DP4=0,0,31,12;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs84181,g1000:0.824681; 2 71871236 chr2:SNP:460 A G 403 low_coverage;off_target DP=16;DP4=0,0,3,13;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs84182,g1000:0.838259,esp5400:0.89048,ExAC:0.837,clinvar:rs84182|2; 2 71886100 chr2:SNP:461 G A 820 . DP=101;DP4=25,32,19,25;AD=57,44;TYPE=SNP;DBXREF=dbSNP:rs62145939,g1000:0.00738818,esp5400:0.019706,ExAC:0.018,clinvar:rs62145939|255; 2 71891361 chr2:SNP:462 C T 479 low_coverage;off_target DP=19;DP4=0,0,14,5;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs2303599,g1000:0.744808,esp5400:0.812512,ExAC:0.82,clinvar:rs2303599|2; 2 71901286 chr2:SNP:463 C T 701 off_target DP=27;DP4=0,0,26,1;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs2559081,g1000:0.728035,esp5400:0.779193,ExAC:0.805,clinvar:rs2559081|2; 2 71906171 chr2:SNP:464 T C 286 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1863812,g1000:0.878195,esp5400:0.924521,ExAC:0.885,clinvar:rs1863812|2; 2 71906278 chr2:SNP:465 A C 608 . DP=60;DP4=12,18,15,15;AD=30,30;TYPE=SNP;DBXREF=dbSNP:rs17718530,g1000:0.16893,esp5400:0.221045,ExAC:0.218,clinvar:rs17718530|255; 2 71907930 chr2:SNP:466 G T 135 low_coverage;off_target DP=19;DP4=12,0,7,0;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs7558412,g1000:0.825479; 2 71909822 chr2:SNP:467 C T 509 off_target DP=44;DP4=7,12,9,16;AD=19,25;TYPE=SNP;DBXREF=dbSNP:rs2559082,g1000:0.164137,esp5400:0.192858,ExAC:0.205,clinvar:rs2559082|2; 2 73339430 chr2:SNP:468 T G 930 off_target DP=38;DP4=0,0,24,14;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs4143146,g1000:0.88139,esp5400:0.890862,ExAC:0.841; 2 73339708 chr2:SNP:469 G A 2365 . DP=94;DP4=0,0,36,58;AD=0,94;TYPE=SNP;DBXREF=dbSNP:rs1864488,g1000:0.520567,esp5400:0.568965,ExAC:0.626; 2 73650122 chr2:SNP:470 T A 1296 off_target DP=53;DP4=0,0,16,37;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs1881246,g1000:0.532748,esp5400:0.510629,ExAC:0.603; 2 73675227 chr2:INDEL:31 T TCTC 2284 . DP=98;DP4=2,0,66,24;AD=2,90;TYPE=INDEL;DBXREF=dbSNP:rs587621330,g1000:0.600439,ExAC:0.638,clinvar:rs34628045|2; 2 73675669 chr2:SNP:471 T G 10000 . DP=152;DP4=1,0,93,58;AD=1,151;TYPE=SNP;DBXREF=dbSNP:rs2037814,g1000:0.872204,esp5400:0.880948,ExAC:0.863,MutationTaster:0; 2 73675844 chr2:SNP:472 C T 10000 . DP=149;DP4=0,0,86,63;AD=0,149;TYPE=SNP;DBXREF=dbSNP:rs7598901,g1000:0.526358,esp5400:0.509743,ExAC:0.599; 2 73678049 chr2:SNP:473 G A 133 low_variant_fraction DP=42;DP4=9,25,2,6;AD=34,8;TYPE=SNP;DBXREF=dbSNP:rs530399810,g1000:0.000199681,ExAC:8.276e-06; 2 73717744 chr2:SNP:474 G A 253 low_variant_fraction DP=114;DP4=36,59,5,14;AD=95,19;TYPE=SNP;DBXREF=dbSNP:rs555256551,g1000:0.000199681; 2 73717757 chr2:SNP:475 A T 137 low_variant_fraction DP=100;DP4=36,53,3,8;AD=89,11;TYPE=SNP;DBXREF=MutationTaster:0.081; 2 73828310 chr2:SNP:476 T C 566 off_target DP=24;DP4=1,0,19,4;AD=1,23;TYPE=SNP;DBXREF=dbSNP:rs1320374,g1000:0.552915,esp5400:0.519209,ExAC:0.623; 2 73828538 chr2:SNP:477 G A 259 low_coverage DP=12;DP4=0,1,1,10;AD=1,11;TYPE=SNP;DBXREF=dbSNP:rs1052161,g1000:0.582268,esp5400:0.540357,ExAC:0.631,MutationTaster:0; 2 74153905 chr2:SNP:478 C T 504 off_target DP=20;DP4=0,0,20,0;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs831526,g1000:0.995208; 2 74185876 chr2:SNP:479 A T 538 off_target DP=22;DP4=0,0,7,15;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs4777,g1000:0.530751,esp5400:0.566289,ExAC:0.586,clinvar:rs4777|2; 2 75061873 chr2:SNP:480 C G 214 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs663504,g1000:0.758586; 2 75105798 chr2:SNP:481 A G 1038 off_target DP=40;DP4=0,0,30,10;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs604112,g1000:0.986422,esp5400:0.994225,ExAC:0.982; 2 84650707 chr2:SNP:482 A G 227 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2832,g1000:0.802117; 2 84660870 chr2:SNP:483 G A 286 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs11126963,g1000:0.980631; 2 85361101 chr2:SNP:484 T G 632 off_target DP=47;DP4=11,6,17,13;AD=17,30;TYPE=SNP;DBXREF=dbSNP:rs116356120,g1000:0.0311502,esp5400:0.048742,ExAC:0.051; 2 85510777 chr2:SNP:485 A G 328 off_target DP=32;DP4=2,14,2,14;AD=16,16;TYPE=SNP;DBXREF=dbSNP:rs7574856,g1000:0.571086; 2 85532205 chr2:SNP:486 C G 807 off_target DP=34;DP4=0,0,24,10;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs6741339,g1000:0.884185; 2 85777633 chr2:SNP:487 C G 308 off_target DP=30;DP4=14,1,14,1;AD=15,15;TYPE=SNP;DBXREF=dbSNP:rs11676382,g1000:0.0255591,esp5400:0.065254,ExAC:0.057; 2 85780107 chr2:SNP:488 G A 933 . DP=78;DP4=16,15,23,24;AD=31,47;TYPE=SNP;DBXREF=dbSNP:rs10179904,g1000:0.11901,esp5400:0.1161,ExAC:0.118; 2 85781318 chr2:SNP:489 T G 1945 . DP=79;DP4=0,0,44,34;AD=0,78;TYPE=SNP;DBXREF=dbSNP:rs1254896,g1000:0.996605,esp5400:0.989496,ExAC:0.988; 2 85788140 chr2:SNP:490 C T 347 off_target DP=27;DP4=4,6,7,10;AD=10,17;TYPE=SNP;DBXREF=dbSNP:rs1254898,g1000:0.164537,esp5400:0.229968,ExAC:0.266; 2 85788175 chr2:SNP:491 T A 159 low_coverage;off_target DP=19;DP4=2,9,2,6;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs7568458,g1000:0.486821; 2 85890293 chr2:SNP:492 T C 151 low_coverage;off_target DP=10;DP4=3,0,7,0;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs2118177,g1000:0.488818; 2 85890758 chr2:SNP:493 T C 593 off_target DP=50;DP4=19,2,20,9;AD=21,29;TYPE=SNP;DBXREF=dbSNP:rs2304566,g1000:0.18111,esp5400:0.211095,ExAC:0.202; 2 85890771 chr2:SNP:494 T G 2290 off_target DP=91;DP4=0,0,68,23;AD=0,91;TYPE=SNP;DBXREF=dbSNP:rs893159,g1000:0.97484,esp5400:0.935604,ExAC:0.929,clinvar:rs893159|2; 2 86371883 chr2:SNP:495 T C 1566 . DP=183;DP4=57,40,39,47;AD=97,86;TYPE=SNP;DBXREF=dbSNP:rs8244,g1000:0.260783,esp5400:0.374848,ExAC:0.416,MutationTaster:1; 2 86378292 chr2:SNP:496 T C 200 off_target DP=20;DP4=10,0,10,0;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs12714169,g1000:0.428315; 2 86385668 chr2:SNP:497 T C 573 off_target DP=57;DP4=22,5,23,7;AD=27,30;TYPE=SNP;DBXREF=dbSNP:rs1057893,g1000:0.375399,esp5400:0.466114,ExAC:0.393; 2 86385682 chr2:INDEL:32 TC T 600 off_target DP=89;DP4=33,18,22,15;AD=51,37;TYPE=INDEL;DBXREF=dbSNP:rs34945759,g1000:0.262181,ExAC:0.36; 2 86385886 chr2:SNP:498 A G 1235 off_target DP=49;DP4=0,0,24,25;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs6739460,g1000:0.954673,esp5400:0.957199,ExAC:0.956; 2 86398291 chr2:SNP:499 G A 533 off_target DP=54;DP4=20,6,22,6;AD=26,28;TYPE=SNP;DBXREF=dbSNP:rs2288113,g1000:0.375599,esp5400:0.469508,ExAC:0.351; 2 86406438 chr2:SNP:500 A G 197 off_target DP=24;DP4=14,0,10,0;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs6547663,g1000:0.374601; 2 86406862 chr2:SNP:501 G A 230 low_coverage;off_target DP=14;DP4=0,4,0,10;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs561579420,g1000:0.000199681; 2 86408385 chr2:SNP:502 A G 333 off_target DP=24;DP4=6,2,10,6;AD=8,16;TYPE=SNP;DBXREF=dbSNP:rs6731995,g1000:0.375399,esp5400:0.471213,ExAC:0.448; 2 86422416 chr2:SNP:503 T C 348 off_target DP=64;DP4=25,18,16,5;AD=43,21;TYPE=SNP;DBXREF=dbSNP:rs17551822,g1000:0.434704,esp5400:0.445014,ExAC:0.276; 2 86422421 chr2:SNP:504 T G 438 off_target DP=70;DP4=29,17,16,8;AD=46,24;TYPE=SNP;DBXREF=dbSNP:rs17551815,g1000:0.3752,esp5400:0.412536,ExAC:0.248; 2 86422660 chr2:SNP:505 C T 108 low_coverage;off_target DP=16;DP4=0,10,0,6;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs9309632,g1000:0.26278; 2 86479035 chr2:SNP:506 A G 597 off_target DP=23;DP4=0,0,21,2;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs12988844,g1000:0.433906,esp5400:0.374233,ExAC:0.495; 2 86479287 chr2:SNP:507 G T 867 off_target DP=36;DP4=0,1,4,31;AD=1,35;TYPE=SNP;DBXREF=dbSNP:rs17438687,g1000:0.433906; 2 86481835 chr2:SNP:508 C T 636 . DP=26;DP4=0,0,23,3;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2276625,g1000:0.428714,esp5400:0.374698,ExAC:0.467,clinvar:rs2276625|255; 2 86491245 chr2:SNP:509 C T 623 off_target DP=24;DP4=0,0,5,19;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs1863056,g1000:0.382188; 2 86509267 chr2:SNP:510 G A 1348 off_target DP=52;DP4=0,0,27,25;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs1863058,g1000:0.405351,esp5400:0.355456,ExAC:0.46; 2 86509388 chr2:SNP:511 T G 807 off_target DP=33;DP4=0,0,12,21;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs1863059,g1000:0.583866,esp5400:0.522402,ExAC:0.539; 2 87015633 chr2:INDEL:33 T TGA 1284 off_target DP=57;DP4=1,2,29,22;AD=3,51;TYPE=INDEL;DBXREF=dbSNP:rs71378806,g1000:0.823482,ExAC:0.793; 2 88424066 chr2:SNP:512 T C 979 . DP=92;DP4=21,23,27,21;AD=44,48;TYPE=SNP;DBXREF=dbSNP:rs2241883,g1000:0.223243,esp5400:0.268451,ExAC:0.298,MutationTaster:0; 2 88874891 chr2:SNP:513 C A 10000 . DP=171;DP4=0,1,61,109;AD=1,170;TYPE=SNP;DBXREF=dbSNP:rs1805165,g1000:0.720647,esp5400:0.802194,ExAC:0.702,clinvar:rs1805165|3,MutationTaster:0; 2 88882942 chr2:SNP:514 T A 766 . DP=32;DP4=1,0,21,10;AD=1,31;TYPE=SNP;DBXREF=dbSNP:rs6750998,g1000:0.204273,esp5400:0.236416,ExAC:0.254,clinvar:rs6750998|3; 2 88895123 chr2:SNP:515 T C 2565 . DP=105;DP4=0,0,66,39;AD=0,105;TYPE=SNP;DBXREF=dbSNP:rs13045,g1000:0.648962,esp5400:0.732106,ExAC:0.637,clinvar:rs13045|255,MutationTaster:0; 2 88895351 chr2:SNP:516 T C 661 off_target DP=27;DP4=0,0,0,27;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs7571971,g1000:0.720847,ExAC:0.585; 2 96780716 chr2:SNP:517 T G 10000 . DP=210;DP4=1,0,116,93;AD=1,209;TYPE=SNP;DBXREF=dbSNP:rs2229169,g1000:0.705272,esp5400:0.703236,ExAC:0.673; 2 96781986 chr2:SNP:518 G C 363 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs3111873,g1000:0.736222; 2 96943473 chr2:SNP:519 T C 597 off_target DP=23;DP4=0,0,8,15;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs3214063,g1000:0.389377,esp5400:0.33668,ExAC:0.374; 2 96944899 chr2:SNP:520 A G 119 low_coverage;off_target DP=13;DP4=1,6,0,6;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs62153038,g1000:0.00738818; 2 96952833 chr2:SNP:521 A G 1571 . DP=66;DP4=1,0,36,29;AD=1,65;TYPE=SNP;DBXREF=dbSNP:rs3171927,g1000:0.284145,esp5400:0.233129,ExAC:0.319; 2 96955480 chr2:SNP:522 T C 1184 off_target DP=47;DP4=0,0,32,15;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs3214058,g1000:0.384984; 2 96956315 chr2:SNP:523 T G 156 low_coverage;off_target DP=6;DP4=0,0,4,2;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs772176,g1000:0.997204; 2 96956663 chr2:SNP:524 A T 113 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs193120448,g1000:0.000199681; 2 96962859 chr2:SNP:525 A G 1736 off_target DP=71;DP4=0,0,22,49;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs17479466,g1000:0.389976,esp5400:0.333426,ExAC:0.371; 2 96966661 chr2:SNP:526 G C 245 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3731930,g1000:0.381589; 2 97463095 chr2:SNP:527 T C 167 low_coverage;off_target DP=16;DP4=0,8,1,7;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs1318597,g1000:0.43151; 2 97527545 chr2:SNP:528 G A 1129 . DP=132;DP4=46,26,32,28;AD=72,60;TYPE=SNP;DBXREF=dbSNP:rs35663590,g1000:0.000798722,esp5400:0.003067,ExAC:0.0036; 2 97529360 chr2:SNP:529 T A 200 off_target DP=23;DP4=11,1,8,3;AD=12,11;TYPE=SNP;DBXREF=dbSNP:rs59271006,g1000:0.424121; 2 98994134 chr2:SNP:530 A G 380 off_target DP=41;DP4=12,10,12,7;AD=22,19;TYPE=SNP;DBXREF=dbSNP:rs2279859,g1000:0.0688898,esp5400:0.079491,ExAC:0.08,clinvar:rs2279859|2; 2 99136266 chr2:SNP:531 T C 389 off_target DP=26;DP4=9,0,17,0;AD=9,17;TYPE=SNP;DBXREF=dbSNP:rs2278212,g1000:0.299521; 2 99149946 chr2:SNP:532 G A 989 . DP=116;DP4=29,35,20,31;AD=64,51;TYPE=SNP;DBXREF=dbSNP:rs2278211,g1000:0.230431,esp5400:0.209923,ExAC:0.249; 2 99170727 chr2:SNP:533 C T 1404 . DP=132;DP4=44,16,54,17;AD=60,71;TYPE=SNP;DBXREF=dbSNP:rs61748141,g1000:0.0117812,esp5400:0.033615,ExAC:0.026; 2 100343557 chr2:SNP:534 C T 1058 . DP=42;DP4=0,0,19,23;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs4851223,g1000:1,ExAC:1,MutationTaster:0; 2 101541798 chr2:SNP:535 C T 531 off_target DP=47;DP4=6,14,8,19;AD=20,27;TYPE=SNP;DBXREF=dbSNP:rs356651,g1000:0.912939,esp5400:0.851366,ExAC:0.868; 2 101564628 chr2:SNP:536 A G 141 low_coverage;off_target DP=16;DP4=8,0,7,0;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs10207725,g1000:0.443091; 2 101580575 chr2:SNP:537 G A 786 . DP=86;DP4=26,19,18,23;AD=45,41;TYPE=SNP;DBXREF=dbSNP:rs41280595,g1000:0.0866613,esp5400:0.153374,ExAC:0.14; 2 101581246 chr2:SNP:538 C T 363 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs7581886,g1000:0.957069; 2 101581976 chr2:SNP:539 A G 142 low_coverage;off_target DP=6;DP4=0,0,6,0;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs4851392,g1000:0.872404; 2 101587455 chr2:SNP:540 C T 502 . DP=56;DP4=19,10,17,10;AD=29,27;TYPE=SNP;DBXREF=dbSNP:rs1562313,g1000:0.236621,esp5400:0.22876,ExAC:0.198,MutationTaster:1; 2 101591304 chr2:SNP:541 A G 1612 . DP=64;DP4=0,0,40,24;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs2305160,g1000:0.798123,esp5400:0.746607,ExAC:0.707,MutationTaster:0; 2 101591443 chr2:SNP:542 A C 440 off_target DP=39;DP4=4,12,6,17;AD=16,23;TYPE=SNP;DBXREF=dbSNP:rs2305159,g1000:0.545128,esp5400:0.369028,ExAC:0.392; 2 101594191 chr2:SNP:543 C T 685 . DP=78;DP4=19,23,19,17;AD=42,36;TYPE=SNP;DBXREF=dbSNP:rs11541353,g1000:0.0826677,esp5400:0.149749,ExAC:0.136,MutationTaster:0; 2 101598677 chr2:SNP:544 C T 659 off_target DP=30;DP4=1,0,19,9;AD=1,28;TYPE=SNP;DBXREF=dbSNP:rs2278727,g1000:0.270767,esp5400:0.241774,ExAC:0.255; 2 101612051 chr2:SNP:545 G A 693 . DP=59;DP4=9,15,17,18;AD=24,35;TYPE=SNP;DBXREF=dbSNP:rs2305158,g1000:0.17492,esp5400:0.218204,ExAC:0.196; 2 102029273 chr2:SNP:546 T C 738 off_target DP=30;DP4=1,0,28,1;AD=1,29;TYPE=SNP;DBXREF=dbSNP:rs11689348,g1000:0.286342; 2 102029548 chr2:SNP:547 G A 983 off_target DP=39;DP4=0,0,14,25;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs1554070,g1000:0.220847,esp5400:0.239332,ExAC:0.256; 2 102031176 chr2:SNP:548 A G 530 off_target DP=21;DP4=0,0,19,2;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs4851434,g1000:0.937899; 2 102031489 chr2:SNP:549 C G 265 low_coverage;off_target DP=17;DP4=0,5,0,12;AD=5,12;TYPE=SNP;DBXREF=dbSNP:rs4851435,g1000:0.607228; 2 102033851 chr2:INDEL:34 T TA 309 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=INDEL;DBXREF=dbSNP:rs11397297,g1000:0.953075; 2 102033867 chr2:SNP:550 T C 353 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6761866,g1000:0.908147; 2 102038849 chr2:SNP:551 T A 1763 . DP=70;DP4=0,0,48,22;AD=0,70;TYPE=SNP;DBXREF=dbSNP:rs4851436,g1000:0.901957,esp5400:0.964131,ExAC:0.971,MutationTaster:0; 2 102083393 chr2:SNP:552 T C 545 off_target DP=21;DP4=0,0,3,18;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs11680478,g1000:0.24401,ExAC:0.223; 2 102774054 chr2:SNP:553 G A 161 low_coverage;off_target DP=18;DP4=9,1,7,1;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs2287047,g1000:0.423722; 2 102785158 chr2:SNP:554 G T 410 off_target DP=31;DP4=2,4,8,12;AD=6,20;TYPE=SNP;DBXREF=dbSNP:rs3213735,g1000:0.347444,esp5400:0.143893,ExAC:0.28; 2 102788125 chr2:SNP:555 G T 133 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs3917304,g1000:0.372204; 2 102788409 chr2:SNP:556 G A 252 low_coverage;off_target DP=10;DP4=0,0,6,4;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2041747,g1000:0.987021,esp5400:0.966815,ExAC:0.971; 2 102789465 chr2:SNP:557 A T 156 low_coverage;off_target DP=10;DP4=0,3,0,7;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs569748255,g1000:0.000199681; 2 102792760 chr2:SNP:558 A G 323 off_target DP=30;DP4=10,3,16,1;AD=13,17;TYPE=SNP;DBXREF=dbSNP:rs3917318,g1000:0.371406; 2 102964742 chr2:SNP:559 C T 103 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs13017455,g1000:0.36861; 2 102965871 chr2:SNP:560 C T 141 low_coverage;off_target DP=16;DP4=0,8,1,6;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs12469506,g1000:0.232029; 2 102979028 chr2:SNP:561 C T 176 low_coverage;off_target DP=15;DP4=3,4,5,3;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs2287037,g1000:0.329273; 2 102984279 chr2:SNP:562 T C 229 . DP=40;DP4=14,12,7,7;AD=26,14;TYPE=SNP;DBXREF=dbSNP:rs1420098,g1000:0.329273,esp5400:0.327663,ExAC:0.354; 2 102992675 chr2:SNP:563 T C 129 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2270297,g1000:0.6877; 2 103006448 chr2:SNP:564 C T 360 off_target DP=47;DP4=25,2,19,1;AD=27,20;TYPE=SNP;DBXREF=dbSNP:rs6749014,g1000:0.432109; 2 103010912 chr2:SNP:565 C T 887 off_target DP=72;DP4=23,7,29,13;AD=30,42;TYPE=SNP;DBXREF=dbSNP:rs1420096,g1000:0.431909,esp5400:0.579569,ExAC:0.436; 2 103011237 chr2:SNP:566 T C 132 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs2287033,g1000:0.437899; 2 103039584 chr2:SNP:567 A T 139 low_coverage;off_target DP=15;DP4=7,1,7,0;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs3817465,g1000:0.688299; 2 103039873 chr2:SNP:568 C G 506 off_target DP=45;DP4=7,13,5,20;AD=20,25;TYPE=SNP;DBXREF=dbSNP:rs2272127,g1000:0.189896,esp5400:0.21274; 2 103039929 chr2:SNP:569 G A 206 low_coverage;off_target DP=18;DP4=0,8,0,10;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs2272128,g1000:0.688299; 2 103040177 chr2:SNP:570 A T 267 off_target DP=26;DP4=11,2,11,2;AD=13,13;TYPE=SNP;DBXREF=dbSNP:rs6543133,g1000:0.434704; 2 103040182 chr2:SNP:571 T G 306 off_target DP=27;DP4=10,2,13,2;AD=12,15;TYPE=SNP;DBXREF=dbSNP:rs9807934,g1000:0.189896; 2 103040247 chr2:INDEL:35 TG TGG 440 off_target DP=56;DP4=22,7,18,8;AD=29,26;TYPE=INDEL;DBXREF=dbSNP:rs11377261,g1000:0.689297,ExAC:0.691; 2 103040249 chr2:SNP:572 C T 385 off_target DP=39;DP4=14,5,13,6;AD=19,19;TYPE=SNP;DBXREF=dbSNP:rs2272129,g1000:0.689297,esp5400:0.724585,ExAC:0.691; 2 103057717 chr2:SNP:573 A G 202 off_target DP=22;DP4=7,5,9,1;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs11465701,g1000:0.0207668,esp5400:0.038033; 2 103059613 chr2:SNP:574 A G 882 off_target DP=35;DP4=0,0,28,7;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs1558651,g1000:1,esp5400:0.999814,ExAC:1; 2 103059818 chr2:SNP:575 A G 409 off_target DP=49;DP4=9,19,9,12;AD=28,21;TYPE=SNP;DBXREF=dbSNP:rs181050185,g1000:0.000199681,esp5400:0.000934,ExAC:0.0006844; 2 105886219 chr2:SNP:576 C A 179 off_target DP=24;DP4=5,10,1,8;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs2241798,g1000:0.271166; 2 105897261 chr2:SNP:577 C T 180 off_target DP=22;DP4=2,10,2,8;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs2679833,g1000:0.987021; 2 105924510 chr2:SNP:578 A G 1424 . DP=134;DP4=25,37,42,30;AD=62,72;TYPE=SNP;DBXREF=dbSNP:rs2241801,g1000:0.635783,esp5400:0.553913,ExAC:0.542; 2 105977903 chr2:SNP:579 G C 526 off_target DP=75;DP4=26,19,16,14;AD=45,30;TYPE=SNP;DBXREF=dbSNP:rs2244182,g1000:0.305511,esp5400:0.203384,ExAC:0.206,clinvar:rs2244182|2; 2 108618540 chr2:SNP:580 G A 222 off_target DP=27;DP4=5,10,4,8;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs3731683,g1000:0.395966,esp5400:0.423034,ExAC:0.361; 2 108915136 chr2:SNP:581 T C 454 low_coverage;off_target DP=18;DP4=0,0,11,7;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs7590599,g1000:0.750998,esp5400:0.875546,ExAC:0.546; 2 108915263 chr2:SNP:582 C T 1159 off_target DP=46;DP4=0,0,23,23;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs4149422,g1000:0.777955; 2 108921495 chr2:SNP:583 T C 265 off_target DP=27;DP4=13,1,13,0;AD=14,13;TYPE=SNP;DBXREF=dbSNP:rs11885078,g1000:0.0271565; 2 108921795 chr2:SNP:584 A G 679 off_target DP=71;DP4=16,20,13,22;AD=36,35;TYPE=SNP;DBXREF=dbSNP:rs11890318,g1000:0.0273562; 2 108922036 chr2:SNP:585 T G 605 . DP=91;DP4=16,40,13,22;AD=56,35;TYPE=SNP;DBXREF=dbSNP:rs17036104,g1000:0.0551118,esp5400:0.045548,ExAC:0.049,MutationTaster:0.01; 2 109371576 chr2:SNP:586 A G 419 off_target DP=40;DP4=12,7,11,10;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs183341856,g1000:0.014377,esp5400:0.021781,ExAC:0.024; 2 109389463 chr2:SNP:587 G A 2114 . DP=84;DP4=0,0,45,39;AD=0,84;TYPE=SNP;DBXREF=dbSNP:rs826580,g1000:0.98722,esp5400:0.984756,ExAC:0.996; 2 109393522 chr2:INDEL:36 TGGGG TGGG 1138 off_target DP=118;DP4=6,0,91,21;AD=6,112;TYPE=INDEL;DBXREF=dbSNP:rs58272304,g1000:0.989417; 2 109513321 chr2:SNP:588 C A 252 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs7607563,g1000:0.882987,esp5400:0.858843,ExAC:0.896,clinvar:rs7607563|1; 2 109513654 chr2:SNP:589 G A 827 . DP=31;DP4=0,0,0,31;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs12623957,g1000:0.711861,esp5400:0.693716,ExAC:0.808,clinvar:rs12623957|0|2; 2 109522720 chr2:SNP:590 G A 649 off_target DP=25;DP4=0,0,25,0;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs260639,g1000:0.674321,esp5400:0.676055,ExAC:0.795,clinvar:rs260639|0; 2 109526969 chr2:SNP:591 G A 2416 . DP=96;DP4=0,0,39,57;AD=0,96;TYPE=SNP;DBXREF=dbSNP:rs260632,g1000:0.921326,esp5400:0.898289,ExAC:0.916,clinvar:rs260632|0|2; 2 109527087 chr2:SNP:592 G A 623 off_target DP=24;DP4=0,0,6,18;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs260631,g1000:0.665535,clinvar:rs260631|0; 2 109527373 chr2:SNP:593 A G 1788 off_target DP=71;DP4=0,0,35,36;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs260630,g1000:0.927516,esp5400:0.907139,ExAC:0.919,clinvar:rs260630|0,MutationTaster:0; 2 109547597 chr2:SNP:594 G A 233 off_target DP=38;DP4=7,17,5,9;AD=24,14;TYPE=SNP;DBXREF=dbSNP:rs76090664,g1000:0.00638978; 2 110886686 chr2:INDEL:37 A AGACCAGAT 221 off_target DP=28;DP4=6,6,5,6;AD=12,11;TYPE=INDEL;DBXREF=dbSNP:rs3838315,g1000:0.478035; 2 110902262 chr2:SNP:595 G A 192 low_coverage;off_target DP=13;DP4=0,4,1,8;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs3752863,g1000:0.394968; 2 110905664 chr2:SNP:596 G A 459 off_target DP=46;DP4=7,15,7,17;AD=22,24;TYPE=SNP;DBXREF=dbSNP:rs1509417,g1000:0.47504; 2 110905743 chr2:SNP:597 T A 210 low_coverage;off_target DP=19;DP4=0,9,0,10;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs1509416,g1000:0.378794; 2 110919321 chr2:SNP:598 C T 471 off_target DP=50;DP4=10,15,11,14;AD=25,25;TYPE=SNP;DBXREF=dbSNP:rs2271244,g1000:0.377995,esp5400:0.283563,ExAC:0.333,clinvar:rs2271244|2; 2 110922703 chr2:SNP:599 C T 375 . DP=38;DP4=9,10,11,7;AD=19,18;TYPE=SNP;DBXREF=dbSNP:rs11675767,g1000:0.474441,esp5400:0.383529,ExAC:0.379,clinvar:rs11675767|255; 2 111887703 chr2:SNP:600 T A 741 . DP=31;DP4=1,0,4,26;AD=1,30;TYPE=SNP;DBXREF=dbSNP:rs4849417,g1000:0.501997,ExAC:0.276; 2 111887754 chr2:SNP:601 T G 164 low_coverage DP=17;DP4=0,9,2,6;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs113135335,g1000:0.0515176,ExAC:0.036; 2 111907691 chr2:SNP:602 T C 2039 . DP=81;DP4=0,0,41,40;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs724710,g1000:0.692492,esp5400:0.710355,ExAC:0.655; 2 112526866 chr2:SNP:603 G A 441 . DP=41;DP4=12,7,12,10;AD=19,22;TYPE=SNP;DBXREF=dbSNP:rs1044864,g1000:0.155751,esp5400:0.176098; 2 112536264 chr2:SNP:604 G T 934 . DP=36;DP4=0,0,27,9;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs939797,esp5400:0.996818,MutationTaster:1; 2 112537857 chr2:SNP:605 C A 174 off_target DP=32;DP4=12,10,6,4;AD=22,10;TYPE=SNP; 2 112541644 chr2:SNP:606 C G 210 low_coverage;off_target DP=19;DP4=2,7,2,8;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs2245224; 2 112541814 chr2:SNP:607 T A 127 off_target DP=24;DP4=13,4,7,0;AD=17,7;TYPE=SNP;DBXREF=dbSNP:rs62164158; 2 112541903 chr2:SNP:608 C T 282 . DP=90;DP4=45,27,10,8;AD=72,18;TYPE=SNP;DBXREF=dbSNP:rs77591803,esp5400:0.009297,MutationTaster:1; 2 112545981 chr2:SNP:609 T G 172 off_target DP=45;DP4=10,25,0,10;AD=35,10;TYPE=SNP;DBXREF=dbSNP:rs1357214; 2 112551673 chr2:SNP:610 G A 119 low_coverage DP=15;DP4=7,2,6,0;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs2249027,esp5400:0.117098,ExAC:0.104,MutationTaster:1; 2 112552427 chr2:SNP:611 C T 552 . DP=84;DP4=27,25,17,15;AD=52,32;TYPE=SNP;DBXREF=dbSNP:rs56780932,g1000:0.144968,esp5400:0.124476,MutationTaster:1; 2 112558479 chr2:SNP:612 A G 173 off_target DP=33;DP4=7,16,6,4;AD=23,10;TYPE=SNP;DBXREF=dbSNP:rs200015423,g1000:0.157748,esp5400:0.846354; 2 112560090 chr2:SNP:613 G A 438 . DP=70;DP4=20,26,8,16;AD=46,24;TYPE=SNP;DBXREF=dbSNP:rs142711068,g1000:0.20028,esp5400:0.036105,ExAC:0.132; 2 112566517 chr2:SNP:614 C T 457 . DP=72;DP4=27,20,17,8;AD=47,25;TYPE=SNP;DBXREF=dbSNP:rs201128688,g1000:0.191693,esp5400:0.062166,ExAC:0.041; 2 112578794 chr2:SNP:615 T C 425 off_target DP=38;DP4=10,7,13,8;AD=17,21;TYPE=SNP;DBXREF=dbSNP:rs71258290,g1000:0.146565,esp5400:0.128946,ExAC:0.154; 2 112582766 chr2:INDEL:38 CTT C 156 off_target DP=30;DP4=6,12,2,7;AD=18,9;TYPE=INDEL;DBXREF=dbSNP:rs60136848,g1000:0.191693,ExAC:0.224; 2 112583476 chr2:SNP:616 C T 222 off_target DP=24;DP4=7,6,6,5;AD=13,11;TYPE=SNP;DBXREF=dbSNP:rs12614297,g1000:0.156749,esp5400:0.18657,ExAC:0.2; 2 112589080 chr2:SNP:617 G A 385 off_target DP=38;DP4=2,16,1,19;AD=18,20;TYPE=SNP;DBXREF=dbSNP:rs11675449,g1000:0.159744; 2 112590989 chr2:SNP:618 A T 699 off_target DP=64;DP4=8,19,14,23;AD=27,37;TYPE=SNP;DBXREF=dbSNP:rs3761697,g1000:0.588059; 2 112604685 chr2:SNP:619 T C 738 off_target DP=68;DP4=17,13,19,19;AD=30,38;TYPE=SNP;DBXREF=dbSNP:rs71413401,g1000:0.146765,esp5400:0.169401,ExAC:0.199; 2 112605465 chr2:SNP:620 T C 549 off_target DP=24;DP4=0,0,6,17;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs4848800,g1000:0.995407,esp5400:0.995812,ExAC:0.999; 2 112608423 chr2:SNP:621 C T 341 . DP=99;DP4=41,35,5,18;AD=76,23;TYPE=SNP;DBXREF=dbSNP:rs147684628,esp5400:0.065347,MutationTaster:0.889; 2 112614384 chr2:SNP:622 C G 222 low_variant_fraction DP=109;DP4=38,54,7,10;AD=92,17;TYPE=SNP;DBXREF=dbSNP:rs141604036,esp5400:0.009671,MutationTaster:1; 2 112614429 chr2:SNP:623 G A 506 . DP=112;DP4=36,44,15,16;AD=80,31;TYPE=SNP;DBXREF=dbSNP:rs72936240,esp5400:0.343279,MutationTaster:1; 2 112615888 chr2:SNP:624 C G 418 . DP=71;DP4=31,16,18,6;AD=47,24;TYPE=SNP;DBXREF=dbSNP:rs79100806,esp5400:0.293735,MutationTaster:0.993; 2 112615933 chr2:SNP:625 T C 1021 . DP=118;DP4=41,26,32,19;AD=67,51;TYPE=SNP;DBXREF=dbSNP:rs72936244,esp5400:0.377951; 2 112619981 chr2:SNP:626 G A 167 . DP=43;DP4=27,6,10,0;AD=33,10;TYPE=SNP;DBXREF=dbSNP:rs201128090,esp5400:0.033078,ExAC:0.004547,MutationTaster:0; 2 112625575 chr2:SNP:627 T C 394 off_target DP=38;DP4=10,7,12,9;AD=17,21;TYPE=SNP;DBXREF=dbSNP:rs6742515,g1000:0.563099,esp5400:0.572173,ExAC:0.633; 2 112630412 chr2:SNP:628 A C 127 low_coverage;off_target DP=18;DP4=0,11,0,7;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs4848826,g1000:0.552316; 2 112636685 chr2:SNP:629 G A 457 off_target DP=41;DP4=0,19,0,22;AD=19,22;TYPE=SNP;DBXREF=dbSNP:rs10175926,g1000:0.561102; 2 112636761 chr2:SNP:630 T C 183 low_coverage;off_target DP=13;DP4=0,5,0,8;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs10167739,g1000:0.561302; 2 112638517 chr2:SNP:631 G C 275 off_target DP=33;DP4=0,19,0,14;AD=19,14;TYPE=SNP;DBXREF=dbSNP:rs4132166,g1000:0.56889; 2 112686988 chr2:SNP:632 G A 605 . DP=71;DP4=12,27,7,25;AD=39,32;TYPE=SNP;DBXREF=dbSNP:rs13027171,g1000:0.168131,esp5400:0.222532,ExAC:0.231,clinvar:rs13027171|2,MutationTaster:0.443; 2 112702647 chr2:SNP:633 C T 740 . DP=68;DP4=8,23,15,22;AD=31,37;TYPE=SNP;DBXREF=dbSNP:rs11683694,g1000:0.190695,esp5400:0.249489,ExAC:0.238; 2 112705157 chr2:SNP:634 T C 177 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs3761701,g1000:0.514776,esp5400:0.584216,ExAC:0.583; 2 112725684 chr2:INDEL:39 A ATGTGTG 157 off_target DP=62;DP4=11,4,6,4;AD=15,10;TYPE=INDEL;DBXREF=dbSNP:rs113538397,ExAC:0.513; 2 112725684 chr2:SNP:635 A G 476 off_target DP=46;DP4=6,2,18,6;AD=8,24;TYPE=SNP;DBXREF=dbSNP:rs75918730,esp5400:0.015523,ExAC:0.0005766; 2 112740373 chr2:SNP:636 G A 983 off_target DP=39;DP4=0,0,32,7;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs1996323,g1000:0.561302,esp5400:0.635713,ExAC:0.597; 2 112740598 chr2:SNP:637 T G 119 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs57297275,g1000:0.236821,ExAC:0.265; 2 112751928 chr2:SNP:638 G A 856 . DP=35;DP4=0,0,13,22;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs7604639,g1000:0.561502,esp5400:0.635434,ExAC:0.597,MutationTaster:0; 2 112754828 chr2:SNP:639 G T 110 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs3811632,g1000:0.303914,esp5400:0.307457,ExAC:0.319,MutationTaster:0; 2 112754880 chr2:SNP:640 G A 480 off_target DP=40;DP4=13,3,20,4;AD=16,24;TYPE=SNP;DBXREF=dbSNP:rs3811633,g1000:0.190096,esp5400:0.250139,ExAC:0.238,MutationTaster:0; 2 112754943 chr2:SNP:641 C T 733 . DP=70;DP4=24,9,30,7;AD=33,37;TYPE=SNP;DBXREF=dbSNP:rs3811634,g1000:0.190495,esp5400:0.250139,ExAC:0.239,MutationTaster:0; 2 112755001 chr2:SNP:642 A G 2421 . DP=98;DP4=1,0,53,44;AD=1,97;TYPE=SNP;DBXREF=dbSNP:rs2230515,g1000:0.561502,esp5400:0.635341,ExAC:0.597,MutationTaster:0; 2 112761653 chr2:SNP:643 C G 867 off_target DP=36;DP4=0,1,6,29;AD=1,35;TYPE=SNP;DBXREF=dbSNP:rs4848933,g1000:0.515176; 2 112765973 chr2:SNP:644 A G 1540 . DP=63;DP4=0,0,25,38;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs1131244,g1000:0.515176,esp5400:0.588028,ExAC:0.582; 2 112767483 chr2:SNP:645 A G 206 low_coverage;off_target DP=18;DP4=7,1,8,2;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs11884693,g1000:0.248602,esp5400:0.234709,ExAC:0.269; 2 112767739 chr2:SNP:646 A G 117 low_coverage;off_target DP=7;DP4=0,2,0,5;AD=2,5;TYPE=SNP;DBXREF=dbSNP:rs75313362,g1000:0.188299; 2 113532885 chr2:SNP:647 G T 829 off_target DP=36;DP4=1,1,6,28;AD=2,34;TYPE=SNP;DBXREF=dbSNP:rs3783550,g1000:0.620407,esp5400:0.726715,ExAC:0.649; 2 113540205 chr2:SNP:648 G T 710 off_target DP=29;DP4=0,0,28,1;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs1609682,g1000:0.620407; 2 113588793 chr2:SNP:649 C T 279 low_coverage;off_target DP=16;DP4=4,0,12,0;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs1143639,g1000:0.134984; 2 113591275 chr2:SNP:650 A G 109 low_coverage;off_target DP=9;DP4=0,4,0,5;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs3136558,g1000:0.235823; 2 113816940 chr2:SNP:651 C G 644 off_target DP=75;DP4=24,18,19,14;AD=42,33;TYPE=SNP;DBXREF=dbSNP:rs2278716,g1000:0.320687,esp5400:0.028757; 2 113816942 chr2:SNP:652 A C 690 off_target DP=75;DP4=20,17,21,16;AD=37,37;TYPE=SNP;DBXREF=dbSNP:rs2278717,g1000:0.324481,esp5400:0.024737; 2 113819536 chr2:SNP:653 A G 260 low_coverage;off_target DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2472187,g1000:0.803514; 2 113819614 chr2:SNP:654 T C 580 off_target DP=23;DP4=0,0,22,1;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2252007,g1000:0.803514; 2 113820124 chr2:SNP:655 C T 857 . DP=85;DP4=25,15,30,15;AD=40,45;TYPE=SNP;DBXREF=dbSNP:rs144478519,g1000:0.00159744,esp5400:0.001859,ExAC:0.003072,clinvar:rs144478519|5,MutationTaster:0.617; 2 113877495 chr2:SNP:656 G T 286 low_coverage;off_target DP=11;DP4=0,0,9,2;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs928940,g1000:0.709065; 2 113887335 chr2:SNP:657 T G 248 off_target DP=26;DP4=0,13,1,12;AD=13,13;TYPE=SNP;DBXREF=dbSNP:rs2232354,g1000:0.116613; 2 113993073 chr2:SNP:658 A G 646 . DP=49;DP4=8,11,14,16;AD=19,30;TYPE=SNP;DBXREF=dbSNP:rs3188996,g1000:0.00519169,esp5400:0.019992,ExAC:0.018,clinvar:rs3188996|2,MutationTaster:1; 2 113999534 chr2:SNP:659 G C 230 off_target DP=27;DP4=10,5,10,2;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs4849186,g1000:0.121406,esp5400:0.150675,ExAC:0.171; 2 113999736 chr2:SNP:660 G T 204 low_coverage;off_target DP=12;DP4=1,2,2,7;AD=3,9;TYPE=SNP;DBXREF=dbSNP:rs13015478,g1000:0.251797,esp5400:0.252175,ExAC:0.251; 2 114000458 chr2:SNP:661 C A 454 low_coverage;off_target DP=18;DP4=0,0,4,14;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs902691,g1000:0.999201; 2 114004237 chr2:SNP:662 G A 504 off_target DP=20;DP4=0,0,17,3;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs11678394,g1000:0.997005; 2 114035923 chr2:SNP:663 A G 783 off_target DP=36;DP4=2,2,20,12;AD=4,32;TYPE=SNP;DBXREF=dbSNP:rs1867763,g1000:0.345647,esp5400:0.379406,ExAC:0.33; 2 115219528 chr2:SNP:664 G A 744 . DP=93;DP4=31,22,27,13;AD=53,40;TYPE=SNP;DBXREF=dbSNP:rs17712682,g1000:0.117013; 2 116066984 chr2:SNP:665 G A 1167 off_target DP=45;DP4=0,0,18,27;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs975453,g1000:0.750399; 2 116256899 chr2:SNP:666 C A 177 off_target DP=22;DP4=13,0,9,0;AD=13,9;TYPE=SNP;DBXREF=dbSNP:rs17044463,g1000:0.246406; 2 116497479 chr2:SNP:667 A G 905 . DP=37;DP4=0,0,16,21;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs1550854,g1000:0.954872,esp5400:0.955754,ExAC:0.988; 2 116497528 chr2:SNP:668 A G 685 off_target DP=28;DP4=0,0,4,24;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs1550853,g1000:0.970847; 2 116525960 chr2:SNP:669 G A 1687 . DP=67;DP4=0,0,21,46;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs1446495,g1000:0.96905,esp5400:0.969232,ExAC:0.992,MutationTaster:0; 2 116534922 chr2:SNP:670 A G 1047 off_target DP=42;DP4=0,1,15,26;AD=1,41;TYPE=SNP;DBXREF=dbSNP:rs1374271,g1000:0.282548,esp5400:0.28258,ExAC:0.256; 2 116535086 chr2:SNP:671 T C 778 off_target DP=30;DP4=0,0,25,5;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2421339,g1000:0.961262; 2 116538204 chr2:SNP:672 T C 343 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs10173956,g1000:0.972244; 2 116539846 chr2:INDEL:40 GAAAAAA GAAAAA 358 off_target DP=51;DP4=4,3,28,16;AD=7,44;TYPE=INDEL;DBXREF=dbSNP:rs36082071,g1000:0.366214; 2 116548526 chr2:SNP:673 A G 312 low_coverage;off_target DP=12;DP4=0,0,11,1;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6735355,g1000:0.835264; 2 116548820 chr2:SNP:674 C T 2095 off_target DP=85;DP4=0,0,38,46;AD=0,84;TYPE=SNP;DBXREF=dbSNP:rs3738879,g1000:0.83147,esp5400:0.787202,ExAC:0.81; 2 116593675 chr2:INDEL:41 ATG A 155 low_coverage;off_target DP=13;DP4=4,2,5,2;AD=6,7;TYPE=INDEL;DBXREF=dbSNP:rs10549769; 2 116598546 chr2:SNP:675 G A 441 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs272011,g1000:0.797324; 2 116599927 chr2:SNP:676 T C 1218 . DP=53;DP4=0,0,24,29;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs272009,g1000:0.982628,esp5400:0.982153,ExAC:0.994; 2 118866033 chr2:INDEL:42 GA GAA 459 off_target DP=27;DP4=0,2,0,21;AD=2,21;TYPE=INDEL;DBXREF=dbSNP:rs11407321,g1000:0.272564; 2 120003642 chr2:SNP:677 C T 557 off_target DP=23;DP4=0,0,2,20;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs838083,g1000:0.88099; 2 120012171 chr2:SNP:678 G A 316 off_target DP=32;DP4=16,0,15,1;AD=16,16;TYPE=SNP;DBXREF=dbSNP:rs12711924,g1000:0.396366; 2 120012412 chr2:SNP:679 C T 1314 . DP=114;DP4=20,27,22,45;AD=47,67;TYPE=SNP;DBXREF=dbSNP:rs41279770,g1000:0.0355431,esp5400:0.046942,ExAC:0.06; 2 120125029 chr2:SNP:680 A G 202 low_coverage DP=8;DP4=0,0,3,5;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2084202,g1000:0.891374,ExAC:0.837; 2 120125936 chr2:SNP:681 T C 907 off_target DP=36;DP4=0,0,9,27;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs2244135,g1000:0.869409; 2 121713022 chr2:SNP:682 C G 661 off_target DP=27;DP4=0,0,5,22;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs6718382,g1000:1,ExAC:0.998,clinvar:rs6718382|2; 2 121713030 chr2:SNP:683 G A 612 off_target DP=25;DP4=0,0,2,23;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs12614482,g1000:0.785942,esp5400:0.750281,ExAC:0.904,clinvar:rs12614482|2; 2 121713041 chr2:SNP:684 T C 441 low_coverage;off_target DP=19;DP4=0,0,4,14;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs12617878,g1000:0.785942,esp5400:0.751971,ExAC:0.898,clinvar:rs12617878|2; 2 121726447 chr2:SNP:685 G A 1397 . DP=62;DP4=0,0,19,40;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs2592595,g1000:0.827276,esp5400:0.806748,ExAC:0.939,clinvar:rs2592595|2,MutationTaster:1; 2 121729490 chr2:SNP:686 C T 1562 off_target DP=62;DP4=0,0,42,20;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs2592591,g1000:0.876597,esp5400:0.868935,ExAC:0.956,clinvar:rs2592591|2; 2 121729686 chr2:SNP:687 T C 1008 off_target DP=40;DP4=0,0,9,31;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2592590,g1000:0.876997,esp5400:0.869185,ExAC:0.955,clinvar:rs2592590|2; 2 121746956 chr2:SNP:688 G T 1817 . DP=195;DP4=38,62,42,53;AD=100,95;TYPE=SNP;DBXREF=dbSNP:rs3738880,g1000:0.508986,esp5400:0.625774,ExAC:0.627,clinvar:rs3738880|2,MutationTaster:0; 2 121747406 chr2:SNP:689 G A 301 . DP=43;DP4=6,21,4,12;AD=27,16;TYPE=SNP;DBXREF=dbSNP:rs12711538,g1000:0.567093,esp5400:0.678326,ExAC:0.644,clinvar:rs12711538|2,MutationTaster:0; 2 121747429 chr2:SNP:690 A G 420 . DP=45;DP4=6,18,8,13;AD=24,21;TYPE=SNP;DBXREF=dbSNP:rs10167980,g1000:0.51238,esp5400:0.625372,ExAC:0.632,clinvar:rs10167980|2; 2 125192068 chr2:SNP:691 T C 1662 . DP=66;DP4=0,0,33,33;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs1425745,g1000:0.824281,esp5400:0.889697,ExAC:0.902; 2 125405302 chr2:SNP:692 C T 2610 off_target DP=265;DP4=67,63,71,64;AD=130,135;TYPE=SNP;DBXREF=dbSNP:rs924802,g1000:0.395767,esp5400:0.516332,ExAC:0.507; 2 125521945 chr2:SNP:693 C T 117 low_coverage;off_target DP=7;DP4=0,2,0,5;AD=2,5;TYPE=SNP;DBXREF=dbSNP:rs962200,g1000:0.635583; 2 127447763 chr2:SNP:694 G A 290 off_target DP=43;DP4=19,8,14,2;AD=27,16;TYPE=SNP;DBXREF=dbSNP:rs6709803,g1000:0.614417,esp5400:0.579159; 2 127453664 chr2:SNP:695 A C 547 . DP=43;DP4=10,6,11,16;AD=16,27;TYPE=SNP;DBXREF=dbSNP:rs1050967,g1000:0.615016,esp5400:0.599461,ExAC:0.555; 2 127808226 chr2:SNP:696 A T 202 low_coverage;off_target DP=8;DP4=0,0,4,4;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2071270,g1000:0.398962; 2 127808532 chr2:SNP:697 G A 766 off_target DP=32;DP4=0,0,13,18;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2043798,g1000:0.309305,esp5400:0.312988,ExAC:0.316; 2 127808909 chr2:SNP:698 G A 636 off_target DP=26;DP4=0,0,3,23;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs6745677,g1000:0.433506; 2 127811042 chr2:SNP:699 G A 865 off_target DP=87;DP4=19,25,21,22;AD=44,43;TYPE=SNP;DBXREF=dbSNP:rs76414720,g1000:0.132388,esp5400:0.144915,ExAC:0.123; 2 127816632 chr2:SNP:700 G A 360 . DP=38;DP4=13,6,8,11;AD=19,19;TYPE=SNP;DBXREF=dbSNP:rs2276579,g1000:0.0946486,esp5400:0.13739,ExAC:0.135,clinvar:rs2276579|255; 2 127819777 chr2:SNP:701 C T 651 . DP=72;DP4=17,21,19,15;AD=38,34;TYPE=SNP;DBXREF=dbSNP:rs61748157,g1000:0.0972444,esp5400:0.104779,ExAC:0.108,clinvar:rs61748157|2; 2 127821085 chr2:SNP:702 C T 538 off_target DP=22;DP4=0,0,16,6;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2071268,g1000:0.345248,esp5400:0.300866; 2 127821452 chr2:SNP:703 C T 317 off_target DP=24;DP4=6,3,12,3;AD=9,15;TYPE=SNP;DBXREF=dbSNP:rs2071267,g1000:0.145567,esp5400:0.159246; 2 127821499 chr2:SNP:704 T C 1712 . DP=68;DP4=0,0,47,21;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs72481904,g1000:0.345248,esp5400:0.285648,ExAC:0.369,clinvar:rs72481904|2; 2 127826533 chr2:SNP:705 A G 666 . DP=67;DP4=14,19,17,17;AD=33,34;TYPE=SNP;DBXREF=dbSNP:rs1060743,g1000:0.354633,esp5400:0.271984,ExAC:0.334,clinvar:rs1060743|255; 2 127834136 chr2:SNP:706 T C 331 off_target DP=20;DP4=3,1,12,4;AD=4,16;TYPE=SNP;DBXREF=dbSNP:rs2276575,g1000:0.171725; 2 127834369 chr2:SNP:707 C T 210 low_coverage;off_target DP=19;DP4=1,8,2,8;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs62157856,g1000:0.152356; 2 127834384 chr2:SNP:708 T C 129 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs13387613,g1000:0.171725; 2 127864546 chr2:SNP:709 G A 253 off_target DP=25;DP4=4,9,5,7;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs11554586,g1000:0.0934505,esp5400:0.126658,ExAC:0.145,clinvar:rs11554586|2; 2 128015367 chr2:SNP:710 C T 716 off_target DP=67;DP4=9,19,16,21;AD=28,37;TYPE=SNP;DBXREF=dbSNP:rs4662718,g1000:0.813698; 2 128028792 chr2:SNP:711 T C 131 off_target DP=21;DP4=11,2,7,1;AD=13,8;TYPE=SNP;DBXREF=dbSNP:rs4150499,g1000:0.819489; 2 128046548 chr2:SNP:712 C A 221 low_coverage;off_target DP=16;DP4=0,6,0,10;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs4150416,g1000:0.739816; 2 128050134 chr2:SNP:713 T C 195 off_target DP=25;DP4=14,1,10,0;AD=15,10;TYPE=SNP;DBXREF=dbSNP:rs4150402,g1000:0.82488,esp5400:0.734191; 2 128180872 chr2:SNP:714 G T 1385 . DP=55;DP4=0,0,23,32;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs5936,g1000:0.645767,esp5400:0.720427,ExAC:0.571,clinvar:rs5936|2,MutationTaster:1; 2 128181028 chr2:SNP:715 A G 303 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1878844,g1000:0.995008,esp5400:0.993509,ExAC:0.997; 2 128184770 chr2:SNP:716 T C 684 . DP=89;DP4=31,22,16,20;AD=53,36;TYPE=SNP;DBXREF=dbSNP:rs5937,g1000:0.229832,esp5400:0.328221,ExAC:0.28,clinvar:rs5937|2; 2 128321770 chr2:SNP:717 G A 1486 . DP=59;DP4=0,0,34,25;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs2404991,g1000:0.395367,esp5400:0.396064,ExAC:0.423,MutationTaster:0; 2 128324125 chr2:INDEL:43 C CT 545 off_target DP=34;DP4=1,0,25,1;AD=1,26;TYPE=INDEL;DBXREF=dbSNP:rs11438188,g1000:0.912141; 2 128338519 chr2:SNP:718 T G 233 off_target DP=26;DP4=0,14,0,12;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs35136538,g1000:0.352835; 2 128339456 chr2:SNP:719 G T 732 . DP=88;DP4=32,17,26,13;AD=49,39;TYPE=SNP;DBXREF=dbSNP:rs4662740,g1000:0.332468,esp5400:0.311001,ExAC:0.392; 2 128339758 chr2:SNP:720 C G 109 low_coverage;off_target DP=8;DP4=2,1,4,1;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs17015424,g1000:0.474441; 2 128341603 chr2:SNP:721 T G 409 off_target DP=28;DP4=9,1,17,1;AD=10,18;TYPE=SNP;DBXREF=dbSNP:rs10928772,g1000:0.348842; 2 128342547 chr2:SNP:722 G A 738 off_target DP=30;DP4=0,1,3,26;AD=1,29;TYPE=SNP;DBXREF=dbSNP:rs4662741,g1000:0.91873; 2 128350551 chr2:SNP:723 G A 456 off_target DP=34;DP4=4,9,3,18;AD=13,21;TYPE=SNP;DBXREF=dbSNP:rs11678239,g1000:0.475639,esp5400:0.419374,ExAC:0.397; 2 128350578 chr2:INDEL:44 TGG TGGG 201 off_target DP=24;DP4=1,1,1,18;AD=2,19;TYPE=INDEL;DBXREF=dbSNP:rs58867441,g1000:0.979034; 2 128351346 chr2:SNP:724 T C 164 low_coverage;off_target DP=15;DP4=0,7,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs7558838,g1000:0.636182; 2 128363530 chr2:INDEL:45 GCC GCCC 437 off_target DP=53;DP4=8,3,19,23;AD=11,42;TYPE=INDEL;DBXREF=dbSNP:rs11382004,g1000:1; 2 128377833 chr2:SNP:725 C G 344 off_target DP=40;DP4=21,1,16,2;AD=22,18;TYPE=SNP;DBXREF=dbSNP:rs2248519,g1000:0.662939; 2 128379427 chr2:SNP:726 C T 149 off_target DP=24;DP4=16,0,8,0;AD=16,8;TYPE=SNP;DBXREF=dbSNP:rs186005153,g1000:0.000399361; 2 128382859 chr2:SNP:727 C T 283 off_target DP=35;DP4=14,5,15,0;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs2245297,g1000:0.670128; 2 128393261 chr2:SNP:728 T C 211 off_target DP=22;DP4=9,1,6,5;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs2255178,g1000:0.67512,esp5400:0.69539,ExAC:0.558; 2 128394877 chr2:INDEL:46 C CT 608 off_target DP=105;DP4=28,28,23,16;AD=56,39;TYPE=INDEL;DBXREF=dbSNP:rs3217355,g1000:0.31869,ExAC:0.242; 2 135890512 chr2:SNP:729 T G 428 . DP=48;DP4=8,17,5,18;AD=25,23;TYPE=SNP;DBXREF=dbSNP:rs200945319,ExAC:0.0001977; 2 135893372 chr2:SNP:730 A G 887 . DP=113;DP4=25,40,14,34;AD=65,48;TYPE=SNP;DBXREF=dbSNP:rs10445686,g1000:0.214457,esp5400:0.114519,ExAC:0.2,clinvar:rs10445686|255,MutationTaster:1; 2 135911422 chr2:SNP:731 T C 1625 . DP=163;DP4=31,45,39,47;AD=76,86;TYPE=SNP;DBXREF=dbSNP:rs17261772,g1000:0.786741,esp5400:0.498978,ExAC:0.517,clinvar:rs17261772|255; 2 136545844 chr2:SNP:732 C G 212 off_target DP=21;DP4=11,0,10,0;AD=11,10;TYPE=SNP;DBXREF=dbSNP:rs1042712,g1000:0.739617,esp5400:0.78509,ExAC:0.796; 2 136546110 chr2:SNP:733 A G 499 . DP=37;DP4=1,13,6,17;AD=14,23;TYPE=SNP;DBXREF=dbSNP:rs2278544,g1000:0.441494,esp5400:0.626046,ExAC:0.621; 2 136548169 chr2:SNP:734 A G 347 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs892716,g1000:0.959265; 2 136548192 chr2:SNP:735 G A 427 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs1808756,g1000:0.959265,esp5400:0.967466,ExAC:0.986; 2 136552188 chr2:SNP:736 G A 1202 off_target DP=151;DP4=50,35,39,26;AD=85,65;TYPE=SNP;DBXREF=dbSNP:rs3213890,g1000:0.219449,esp5400:0.183027,ExAC:0.191; 2 136552512 chr2:INDEL:47 AC ACC 391 low_coverage;off_target DP=17;DP4=0,1,0,16;AD=1,16;TYPE=INDEL;DBXREF=dbSNP:rs67420228,g1000:1; 2 136552517 chr2:SNP:737 G A 144 low_coverage;off_target DP=15;DP4=0,8,0,7;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs3213892,g1000:0.220048; 2 136552526 chr2:SNP:738 A C 146 low_coverage;off_target DP=16;DP4=0,9,0,7;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs3816155,g1000:0.739217; 2 136555659 chr2:SNP:739 T C 820 . DP=76;DP4=21,15,19,21;AD=36,40;TYPE=SNP;DBXREF=dbSNP:rs2322659,g1000:0.442692,esp5400:0.612381,ExAC:0.606,MutationTaster:0; 2 136558157 chr2:SNP:740 C T 193 low_coverage;off_target DP=16;DP4=4,3,7,2;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs748841,g1000:0.372204,esp5400:0.549637,ExAC:0.56; 2 136561517 chr2:SNP:741 T C 366 . DP=41;DP4=14,8,11,8;AD=22,19;TYPE=SNP;DBXREF=dbSNP:rs147495948,g1000:0.000798722,esp5400:0.000279,ExAC:0.0009142,MutationTaster:0.043; 2 136561557 chr2:SNP:742 G A 614 . DP=58;DP4=13,15,17,13;AD=28,30;TYPE=SNP;DBXREF=dbSNP:rs2304371,g1000:0.660144,esp5400:0.691207,ExAC:0.753; 2 136567633 chr2:SNP:743 A G 269 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6430591,g1000:0.979233; 2 136569848 chr2:SNP:744 C A 180 low_coverage;off_target DP=18;DP4=9,0,9,0;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs12988076,g1000:0.35623,esp5400:0.532738,ExAC:0.555; 2 136575199 chr2:SNP:745 G T 2006 . DP=216;DP4=56,55,59,46;AD=111,105;TYPE=SNP;DBXREF=dbSNP:rs6719488,g1000:0.35603,esp5400:0.534021,ExAC:0.555; 2 136575534 chr2:SNP:746 T C 3097 . DP=125;DP4=0,0,47,77;AD=0,124;TYPE=SNP;DBXREF=dbSNP:rs4954449,g1000:0.979233,esp5400:0.976576,ExAC:0.994,MutationTaster:0; 2 136590746 chr2:SNP:747 C T 456 . DP=33;DP4=5,6,11,11;AD=11,22;TYPE=SNP;DBXREF=dbSNP:rs3754689,g1000:0.355032,esp5400:0.273099,ExAC:0.244,MutationTaster:0.001; 2 136594158 chr2:SNP:748 G A 992 . DP=110;DP4=45,13,43,9;AD=58,52;TYPE=SNP;DBXREF=dbSNP:rs2236783,g1000:0.348442,esp5400:0.535137,ExAC:0.549; 2 136610598 chr2:SNP:749 A G 170 low_coverage;off_target DP=17;DP4=0,8,0,9;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs4988226,g1000:0.336462; 2 136614255 chr2:SNP:750 G A 582 off_target DP=60;DP4=23,7,23,6;AD=30,29;TYPE=SNP;DBXREF=dbSNP:rs309180,g1000:0.336262,esp5400:0.526957,ExAC:0.536; 2 136622543 chr2:SNP:751 T G 148 off_target DP=20;DP4=10,1,6,3;AD=11,9;TYPE=SNP;DBXREF=dbSNP:rs3087343,g1000:0.217851,esp5400:0.167968,ExAC:0.187; 2 136622825 chr2:SNP:752 A G 343 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs309177,g1000:0.979233; 2 136626078 chr2:SNP:753 A G 157 off_target DP=20;DP4=11,1,8,0;AD=12,8;TYPE=SNP;DBXREF=dbSNP:rs3769001,g1000:0.217652; 2 136633771 chr2:SNP:754 T C 131 off_target DP=21;DP4=10,4,6,1;AD=14,7;TYPE=SNP;DBXREF=dbSNP:rs191079,g1000:0.675319; 2 136633962 chr2:SNP:755 G A 277 off_target DP=32;DP4=7,11,4,10;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs1057031,g1000:0.23722,esp5400:0.163661,ExAC:0.192; 2 138727607 chr2:SNP:756 G A 119 low_coverage;off_target DP=13;DP4=7,0,6,0;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs3100702,g1000:0.385184; 2 138771219 chr2:SNP:757 G A 192 off_target DP=30;DP4=19,0,11,0;AD=19,11;TYPE=SNP;DBXREF=dbSNP:rs12475006,g1000:0.245407; 2 138771760 chr2:SNP:758 A G 508 off_target DP=73;DP4=10,34,5,24;AD=44,29;TYPE=SNP;DBXREF=dbSNP:rs1050891,g1000:0.245407; 2 143676014 chr2:SNP:759 C G 107 low_coverage;off_target DP=11;DP4=6,0,4,1;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs351701,g1000:0.633387; 2 143713700 chr2:SNP:760 T A 225 off_target DP=20;DP4=9,0,11,0;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs351674,g1000:0.632987; 2 143787161 chr2:SNP:761 C A 1289 off_target DP=56;DP4=1,0,38,16;AD=1,54;TYPE=SNP;DBXREF=dbSNP:rs6429999,g1000:0.589058,esp5400:0.602383,ExAC:0.666; 2 143787274 chr2:SNP:762 C T 1008 off_target DP=40;DP4=0,0,10,30;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs6430000,g1000:0.976038,esp5400:0.991911,ExAC:0.988; 2 145277924 chr2:SNP:763 A G 152 low_coverage DP=17;DP4=0,9,0,8;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs146048066,g1000:0.0165735,ExAC:0.027; 2 148731252 chr2:SNP:764 T C 303 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1378081,g1000:0.994209; 2 149219983 chr2:SNP:765 T G 103 low_coverage;off_target DP=11;DP4=6,0,5,0;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs13402768,g1000:0.0860623; 2 149243260 chr2:SNP:766 G A 228 off_target DP=32;DP4=17,3,10,2;AD=20,12;TYPE=SNP;DBXREF=dbSNP:rs2121344,g1000:0.599641,esp5400:0.56281,ExAC:0.577; 2 149402404 chr2:INDEL:48 CG CGG 216 low_coverage;off_target DP=11;DP4=2,0,9,0;AD=2,9;TYPE=INDEL;DBXREF=dbSNP:rs113388632,g1000:1; 2 149448134 chr2:SNP:767 A T 154 off_target DP=31;DP4=0,22,0,9;AD=22,9;TYPE=SNP;DBXREF=dbSNP:rs13432318,g1000:0.104433; 2 149520214 chr2:SNP:768 C A 252 off_target DP=20;DP4=4,4,8,4;AD=8,12;TYPE=SNP;DBXREF=dbSNP:rs10193313,g1000:0.52476,esp5400:0.694544,ExAC:0.646; 2 149529083 chr2:SNP:769 T C 441 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4972266,g1000:0.954273; 2 150426362 chr2:SNP:770 T C 354 off_target DP=32;DP4=13,0,17,1;AD=13,18;TYPE=SNP;DBXREF=dbSNP:rs6923,g1000:0.553115; 2 150426399 chr2:SNP:771 A G 1058 off_target DP=42;DP4=0,0,31,11;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs6742604,g1000:0.996006; 2 150427516 chr2:SNP:772 C T 636 off_target DP=26;DP4=0,0,23,3;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs4500908,g1000:0.621805; 2 150432377 chr2:SNP:773 C G 612 off_target DP=25;DP4=0,0,14,11;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs12232959,g1000:0.621605,esp5400:0.621956,ExAC:0.731,clinvar:rs12232959|3; 2 150432469 chr2:SNP:774 G T 403 low_coverage;off_target DP=16;DP4=0,0,2,14;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs10932467,g1000:0.63139; 2 150432976 chr2:SNP:775 C T 1562 . DP=62;DP4=0,0,30,32;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs11545261,g1000:0.759585,esp5400:0.77124,ExAC:0.868,clinvar:rs11545261|2; 2 150435889 chr2:INDEL:49 CAA CAAAA 479 off_target DP=37;DP4=1,0,34,2;AD=1,36;TYPE=INDEL;DBXREF=dbSNP:rs36108609,g1000:0.648363; 2 150443689 chr2:SNP:776 C G 636 off_target DP=26;DP4=0,0,3,23;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs4667420,g1000:0.688498,esp5400:0.782931; 2 152342481 chr2:SNP:777 A G 408 off_target DP=40;DP4=4,16,5,15;AD=20,20;TYPE=SNP;DBXREF=dbSNP:rs16830090,g1000:0.248602,esp5400:0.229409,ExAC:0.286,clinvar:rs16830090|2; 2 152346979 chr2:SNP:778 T C 724 . DP=65;DP4=14,14,18,18;AD=28,36;TYPE=SNP;DBXREF=dbSNP:rs1061305,g1000:0.334265,esp5400:0.422235,ExAC:0.364,clinvar:rs1061305|255,MutationTaster:1; 2 152348842 chr2:SNP:779 T A 310 off_target DP=49;DP4=17,14,10,8;AD=31,18;TYPE=SNP;DBXREF=dbSNP:rs2288193,g1000:0.201677,esp5400:0.266871,ExAC:0.294,clinvar:rs2288193|2; 2 152349026 chr2:SNP:780 G A 1335 off_target DP=53;DP4=0,0,17,36;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs2288195,g1000:0.638379,esp5400:0.643294,ExAC:0.66,clinvar:rs2288195|2; 2 152350462 chr2:SNP:781 T C 1569 off_target DP=64;DP4=0,0,24,39;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs4664455,g1000:0.641174; 2 152352843 chr2:SNP:782 C G 1637 . DP=65;DP4=0,0,28,37;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs7575451,g1000:0.627796,esp5400:0.630593,ExAC:0.639,clinvar:rs7575451|255,MutationTaster:1; 2 152369117 chr2:SNP:783 T C 983 off_target DP=39;DP4=0,0,39,0;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs13023600,g1000:0.996605; 2 152374800 chr2:SNP:784 G A 1813 off_target DP=72;DP4=0,0,33,39;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs16830136,g1000:0.535942,esp5400:0.593731,ExAC:0.589,clinvar:rs16830136|2; 2 152381895 chr2:SNP:785 G A 389 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2288196,g1000:0.544329; 2 152382329 chr2:SNP:786 G A 312 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs7597735,g1000:0.594649; 2 152382454 chr2:SNP:787 C G 1938 off_target DP=77;DP4=0,0,34,43;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs6721666,g1000:0.545727,esp5400:0.596908,ExAC:0.594,clinvar:rs6721666|2; 2 152383913 chr2:SNP:788 T C 286 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2288198,g1000:0.606829; 2 152387553 chr2:SNP:789 T C 1436 . DP=57;DP4=0,0,34,23;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs4664475,g1000:0.491613,esp5400:0.554854,ExAC:0.577,clinvar:rs4664475|255; 2 152388228 chr2:SNP:790 G C 1084 off_target DP=43;DP4=0,0,34,9;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs60806638,g1000:0.500599; 2 152388415 chr2:INDEL:50 ATT AT 616 . DP=52;DP4=0,2,17,33;AD=2,50;TYPE=INDEL;DBXREF=dbSNP:rs56026241,g1000:0.491214,ExAC:0.559,clinvar:rs56026241|2; 2 152394534 chr2:SNP:791 T G 1003 off_target DP=41;DP4=0,0,20,21;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs3732310,g1000:0.498802,esp5400:0.560347,ExAC:0.578,clinvar:rs3732310|2; 2 152402711 chr2:SNP:792 A G 198 low_coverage;off_target DP=9;DP4=0,0,7,1;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs3213818,g1000:0.625998; 2 152403014 chr2:SNP:793 C T 649 off_target DP=25;DP4=0,0,5,20;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs4664486,g1000:0.524361; 2 152404294 chr2:SNP:794 C T 415 low_coverage;off_target DP=16;DP4=0,0,4,12;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2288201,g1000:0.624002,esp5400:0.619419,ExAC:0.613,clinvar:rs2288201|2; 2 152409416 chr2:SNP:795 C T 294 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2288203,g1000:0.522165; 2 152409809 chr2:SNP:796 C A 636 off_target DP=26;DP4=0,0,18,8;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs4575719,g1000:0.494609; 2 152417064 chr2:SNP:797 G A 557 off_target DP=51;DP4=24,0,24,3;AD=24,27;TYPE=SNP;DBXREF=dbSNP:rs2288206,g1000:0.288938,esp5400:0.279537,ExAC:0.254,clinvar:rs2288206|2; 2 152417999 chr2:SNP:798 C T 220 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs7424331,g1000:0.652556; 2 152422076 chr2:SNP:799 C G 2992 . DP=119;DP4=0,0,77,42;AD=0,119;TYPE=SNP;DBXREF=dbSNP:rs2288210,g1000:0.653155,esp5400:0.64763,ExAC:0.657,clinvar:rs2288210|255,MutationTaster:1; 2 152422087 chr2:SNP:800 A G 1085 . DP=123;DP4=43,21,42,17;AD=64,59;TYPE=SNP;DBXREF=dbSNP:rs2288211,g1000:0.223842,esp5400:0.224033,ExAC:0.275,clinvar:rs2288211|255; 2 152425692 chr2:SNP:801 T C 245 off_target DP=22;DP4=10,0,12,0;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs3732312,g1000:0.223842; 2 152425820 chr2:SNP:802 C T 531 . DP=62;DP4=17,17,17,11;AD=34,28;TYPE=SNP;DBXREF=dbSNP:rs149881695,g1000:0.00139776,esp5400:0.001291,ExAC:0.002283,clinvar:rs149881695|255,MutationTaster:1; 2 152427249 chr2:SNP:803 A G 367 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs7568873,g1000:0.647764; 2 152432886 chr2:SNP:804 G A 317 off_target DP=41;DP4=3,21,3,14;AD=24,17;TYPE=SNP;DBXREF=dbSNP:rs61254943,g1000:0.263978,esp5400:0.239848,ExAC:0.267,clinvar:rs61254943|2; 2 152436012 chr2:SNP:805 T G 116 low_variant_fraction DP=48;DP4=22,18,4,4;AD=40,8;TYPE=SNP;DBXREF=dbSNP:rs62174690,esp5400:0.102993,ExAC:0.203,clinvar:rs62174690|2,MutationTaster:1; 2 152441905 chr2:SNP:806 G C 435 off_target DP=48;DP4=23,1,21,3;AD=24,24;TYPE=SNP; 2 152442244 chr2:SNP:807 G A 104 off_target DP=29;DP4=0,23,1,5;AD=23,6;TYPE=SNP; 2 152443055 chr2:SNP:808 T C 101 low_variant_fraction;off_target DP=32;DP4=5,21,1,5;AD=26,6;TYPE=SNP;DBXREF=dbSNP:rs144569150; 2 152447578 chr2:SNP:809 C T 115 low_coverage;off_target DP=13;DP4=7,0,6,0;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs760841382; 2 152447580 chr2:SNP:810 G A 115 low_coverage;off_target DP=17;DP4=11,0,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs766372738; 2 152447585 chr2:SNP:811 A G 115 low_coverage;off_target DP=17;DP4=11,0,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs7423252; 2 152447624 chr2:SNP:812 C T 106 off_target DP=23;DP4=17,0,6,0;AD=17,6;TYPE=SNP;DBXREF=dbSNP:rs755009988; 2 152447693 chr2:SNP:813 A G 231 off_target DP=38;DP4=24,1,13,0;AD=25,13;TYPE=SNP;DBXREF=dbSNP:rs4248069; 2 152447845 chr2:INDEL:51 G GC 608 off_target DP=210;DP4=91,71,30,15;AD=162,45;TYPE=INDEL;DBXREF=g1000:0.155351,ExAC:0.098; 2 152448640 chr2:SNP:814 T C 202 low_variant_fraction DP=147;DP4=71,58,8,10;AD=129,18;TYPE=SNP;DBXREF=dbSNP:rs10909569,esp5400:0.015152,clinvar:rs10909569|2,MutationTaster:1; 2 152452458 chr2:SNP:815 G C 341 off_target DP=52;DP4=30,3,17,2;AD=33,19;TYPE=SNP;DBXREF=dbSNP:rs140039820; 2 152452797 chr2:SNP:816 G A 127 low_variant_fraction;off_target DP=42;DP4=0,33,1,7;AD=33,8;TYPE=SNP; 2 152453608 chr2:SNP:817 T C 107 off_target DP=23;DP4=5,11,3,4;AD=16,7;TYPE=SNP;DBXREF=dbSNP:rs149849735; 2 152457116 chr2:SNP:818 T G 192 low_variant_fraction DP=68;DP4=33,23,8,4;AD=56,12;TYPE=SNP;DBXREF=dbSNP:rs200125713,clinvar:rs200125713|2,MutationTaster:1; 2 152459116 chr2:SNP:819 G A 141 . DP=42;DP4=15,18,8,1;AD=33,9;TYPE=SNP;DBXREF=dbSNP:rs774726264,clinvar:rs774726264|255; 2 152466728 chr2:SNP:820 T C 204 low_coverage;off_target DP=12;DP4=0,3,0,9;AD=3,9;TYPE=SNP;DBXREF=dbSNP:rs58909595,g1000:0.221446; 2 152475938 chr2:SNP:821 T G 234 low_coverage;off_target DP=12;DP4=2,0,10,0;AD=2,10;TYPE=SNP;DBXREF=dbSNP:rs10186656,g1000:0.248802,esp5400:0.317246,ExAC:0.327,clinvar:rs10186656|2; 2 152476028 chr2:SNP:822 C G 335 . DP=48;DP4=23,6,14,5;AD=29,19;TYPE=SNP;DBXREF=dbSNP:rs10172023,g1000:0.219848,esp5400:0.269714,ExAC:0.288,clinvar:rs10172023|255,MutationTaster:1; 2 152481977 chr2:SNP:823 A G 555 off_target DP=22;DP4=0,0,20,2;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs10186482,g1000:0.45647; 2 152490219 chr2:SNP:824 A G 1260 . DP=50;DP4=0,0,42,8;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs6709886,g1000:0.625998,esp5400:0.606679,ExAC:0.636,clinvar:rs6709886|2; 2 152490458 chr2:SNP:825 A G 1091 . DP=46;DP4=0,0,8,38;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs6710212,g1000:0.972045,esp5400:0.979592,ExAC:0.993,clinvar:rs6710212|2,MutationTaster:1; 2 152500449 chr2:SNP:826 C G 1543 . DP=174;DP4=49,41,45,39;AD=90,84;TYPE=SNP;DBXREF=dbSNP:rs13013209,g1000:0.293331,esp5400:0.350652,ExAC:0.414,clinvar:rs13013209|255,MutationTaster:1; 2 152527572 chr2:SNP:827 C T 10000 . DP=127;DP4=0,0,82,45;AD=0,127;TYPE=SNP;DBXREF=dbSNP:rs7426114,g1000:0.533147,esp5400:0.660012,ExAC:0.737,clinvar:rs7426114|255,MutationTaster:1; 2 152531077 chr2:SNP:828 A G 312 low_coverage DP=12;DP4=0,0,2,10;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6711382,g1000:0.716054,esp5400:0.819835,ExAC:0.826,clinvar:rs6711382|2,MutationTaster:1; 2 152536498 chr2:SNP:829 T A 1511 . DP=60;DP4=0,0,32,28;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs6735208,g1000:0.583466,esp5400:0.700912,ExAC:0.749,clinvar:rs6735208|255,MutationTaster:1; 2 152552062 chr2:SNP:830 A C 403 low_coverage;off_target DP=16;DP4=0,0,14,2;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs6433569,g1000:0.498802,esp5400:0.62851,ExAC:0.716,clinvar:rs6433569|2; 2 152573902 chr2:INDEL:52 A AGGC 1663 off_target DP=86;DP4=4,4,42,27;AD=8,69;TYPE=INDEL;DBXREF=dbSNP:rs34733773,g1000:0.569289,ExAC:0.737,clinvar:rs397718862|2; 2 152573981 chr2:SNP:831 A G 1888 . DP=75;DP4=0,0,41,34;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs4611637,g1000:0.569289,esp5400:0.685732,ExAC:0.743,clinvar:rs4611637|255; 2 152584153 chr2:SNP:832 A C 328 low_coverage;off_target DP=13;DP4=0,0,12,1;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4664499,g1000:0.748203; 2 152729138 chr2:SNP:833 T C 530 off_target DP=21;DP4=0,0,0,21;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs770609,g1000:0.992412; 2 157183211 chr2:INDEL:53 TCCC TCC 126 off_target DP=22;DP4=6,1,8,7;AD=7,15;TYPE=INDEL;DBXREF=dbSNP:rs35479735,g1000:0.703075,ExAC:0.727; 2 157406249 chr2:SNP:834 G A 591 . DP=49;DP4=6,15,7,21;AD=21,28;TYPE=SNP;DBXREF=dbSNP:rs2116665,g1000:0.657947,esp5400:0.629857,ExAC:0.682,MutationTaster:0.872; 2 157427593 chr2:SNP:835 T C 832 off_target DP=33;DP4=0,0,21,12;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs1469652,g1000:0.982029; 2 158395079 chr2:SNP:836 C G 332 . DP=31;DP4=7,7,6,11;AD=14,17;TYPE=SNP;DBXREF=dbSNP:rs7576514,g1000:0.844649,esp5400:0.848113,ExAC:0.864; 2 158399510 chr2:SNP:837 T A 207 off_target DP=20;DP4=0,10,0,10;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs4254465,g1000:0.721446; 2 158399514 chr2:SNP:838 G T 227 off_target DP=22;DP4=0,11,0,11;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs4461222,g1000:0.721446; 2 158400908 chr2:SNP:839 C T 171 low_coverage;off_target DP=19;DP4=9,1,9,0;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs6728987,g1000:0.784545,esp5400:0.76283,ExAC:0.798; 2 158401137 chr2:SNP:840 T C 567 off_target DP=59;DP4=13,16,13,17;AD=29,30;TYPE=SNP;DBXREF=dbSNP:rs10432556,g1000:0.726038,esp5400:0.702826,ExAC:0.782; 2 158412542 chr2:SNP:841 T C 1004 off_target DP=43;DP4=2,0,34,7;AD=2,41;TYPE=SNP;DBXREF=dbSNP:rs13010956,g1000:0.326677; 2 158443889 chr2:SNP:842 G A 2554 . DP=105;DP4=1,1,27,76;AD=2,103;TYPE=SNP;DBXREF=dbSNP:rs4556933,g1000:0.440296,esp5400:0.481502,ExAC:0.388; 2 158626980 chr2:SNP:843 C T 10000 . DP=139;DP4=0,0,79,59;AD=0,138;TYPE=SNP;DBXREF=dbSNP:rs1146031,g1000:0.913938,esp5400:0.911136,ExAC:0.964,clinvar:rs1146031|2; 2 158636910 chr2:SNP:844 G A 1368 . DP=56;DP4=0,0,34,21;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs2227861,g1000:0.650958,esp5400:0.601971,ExAC:0.75,clinvar:rs2227861|2; 2 158655883 chr2:INDEL:54 CAAAAAAAAAAA CAAAAAAAAAAAAA 262 homopolymer_region;off_target DP=65;DP4=19,4,19,17;AD=23,36;TYPE=INDEL;DBXREF=dbSNP:rs68110751,g1000:0.558706; 2 162730312 chr2:SNP:845 T C 106 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs35292746,g1000:0.578674; 2 162757676 chr2:SNP:846 A G 144 low_coverage;off_target DP=15;DP4=0,8,0,7;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs6754546,g1000:0.548123; 2 162813807 chr2:SNP:847 A G 630 off_target DP=25;DP4=0,0,3,22;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs10221808,g1000:0.334465; 2 163124051 chr2:SNP:848 C T 460 . DP=59;DP4=8,27,8,16;AD=35,24;TYPE=SNP;DBXREF=dbSNP:rs1990760,g1000:0.356629,esp5400:0.458635,ExAC:0.505,clinvar:rs1990760|2,MutationTaster:1; 2 163124637 chr2:SNP:849 T C 840 . DP=78;DP4=19,18,23,18;AD=37,41;TYPE=SNP;DBXREF=dbSNP:rs35667974,g1000:0.00239617,esp5400:0.011712,ExAC:0.012,MutationTaster:1; 2 163128824 chr2:SNP:850 T C 1061 . DP=130;DP4=34,39,26,31;AD=73,57;TYPE=SNP;DBXREF=dbSNP:rs3747517,g1000:0.589856,esp5400:0.691764,ExAC:0.674,clinvar:rs3747517|2,MutationTaster:1; 2 165987772 chr2:SNP:851 T G 214 . DP=40;DP4=21,7,10,2;AD=28,12;TYPE=SNP;DBXREF=dbSNP:rs62174900,g1000:0.181709,esp5400:0.161368,ExAC:0.202,clinvar:rs62174900|2; 2 165996107 chr2:SNP:852 T A 960 . DP=37;DP4=0,0,15,22;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs1946892,g1000:0.634585,esp5400:0.504927,ExAC:0.507; 2 166003479 chr2:SNP:853 G A 802 . DP=82;DP4=13,29,13,27;AD=42,40;TYPE=SNP;DBXREF=dbSNP:rs16850131,g1000:0.257388,esp5400:0.223833,ExAC:0.221,clinvar:rs16850131|2; 2 166003573 chr2:SNP:854 C T 241 off_target DP=23;DP4=0,11,0,12;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs58539679,g1000:0.256989,esp5400:0.221737,ExAC:0.22; 2 166012203 chr2:SNP:855 C T 942 off_target DP=39;DP4=1,0,38,0;AD=1,38;TYPE=SNP;DBXREF=dbSNP:rs3731760,g1000:0.732827; 2 166153499 chr2:SNP:856 A G 1038 off_target DP=40;DP4=0,0,29,11;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs7593568,g1000:0.772165,esp5400:0.835923,ExAC:0.788; 2 166170127 chr2:SNP:857 T C 661 . DP=27;DP4=0,0,17,10;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs2121371,g1000:0.772364,esp5400:0.828964,ExAC:0.802,clinvar:rs2121371|2; 2 166172317 chr2:SNP:858 A G 519 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1838846,g1000:0.771965,esp5400:0.842196,ExAC:0.8; 2 166179650 chr2:SNP:859 C T 672 off_target DP=83;DP4=28,19,29,7;AD=47,36;TYPE=SNP;DBXREF=dbSNP:rs1867864,g1000:0.502796,esp5400:0.596021,ExAC:0.517,clinvar:rs1867864|2; 2 166221883 chr2:INDEL:55 GTATC G 315 off_target DP=42;DP4=3,22,0,16;AD=25,16;TYPE=INDEL;DBXREF=dbSNP:rs67174953; 2 166229922 chr2:SNP:860 T C 378 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs6432821,g1000:0.986621; 2 166234076 chr2:SNP:861 A G 467 off_target DP=49;DP4=10,15,13,11;AD=25,24;TYPE=SNP;DBXREF=dbSNP:rs1864885,g1000:0.202276,esp5400:0.120276,ExAC:0.245; 2 166237497 chr2:SNP:862 T C 118 off_target DP=23;DP4=16,0,7,0;AD=16,7;TYPE=SNP;DBXREF=dbSNP:rs7578237,g1000:0.721046; 2 166245230 chr2:SNP:863 T A 1181 . DP=140;DP4=44,33,29,34;AD=77,63;TYPE=SNP;DBXREF=dbSNP:rs2060198,g1000:0.249401,esp5400:0.239583,ExAC:0.285,clinvar:rs2060198|2; 2 166611774 chr2:SNP:864 C G 237 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6705649,g1000:0.976637; 2 166615555 chr2:SNP:865 C T 115 low_coverage;off_target DP=17;DP4=0,11,0,6;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs4667835,g1000:0.553514; 2 166621354 chr2:SNP:866 T C 392 low_coverage;off_target DP=16;DP4=0,0,15,1;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2113840,g1000:0.995807,esp5400:0.995445,ExAC:0.999; 2 166740578 chr2:SNP:867 C T 211 off_target DP=22;DP4=0,11,1,10;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs34701755,g1000:0.107029,esp5400:0.118857,ExAC:0.135; 2 166786351 chr2:SNP:868 C T 252 off_target DP=20;DP4=1,7,2,10;AD=8,12;TYPE=SNP;DBXREF=dbSNP:rs1560596,g1000:0.202676; 2 166786973 chr2:SNP:869 A C 857 off_target DP=34;DP4=0,0,3,31;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1560597,g1000:0.948083; 2 166788336 chr2:SNP:870 T C 2014 . DP=80;DP4=0,0,46,34;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs7592429,g1000:0.948083,esp5400:0.946087,ExAC:0.985,clinvar:rs7592429|255,MutationTaster:1; 2 166797450 chr2:SNP:871 C A 328 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7592392,g1000:0.667332; 2 166797646 chr2:SNP:872 C T 1760 . DP=72;DP4=0,0,33,39;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs1432273,g1000:0.667332,esp5400:0.6029,ExAC:0.657,clinvar:rs1432273|255,MutationTaster:1; 2 166799596 chr2:SNP:873 T C 415 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs13000534,g1000:0.947484; 2 166799893 chr2:SNP:874 G A 783 off_target DP=33;DP4=0,0,4,29;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs10930190,g1000:0.996406,esp5400:0.995514,ExAC:0.998; 2 166801924 chr2:SNP:875 C G 467 low_coverage;off_target DP=18;DP4=0,0,18,0;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs6432853,g1000:0.659744; 2 166810053 chr2:SNP:876 C T 303 low_coverage;off_target DP=12;DP4=0,0,10,2;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6716946,g1000:0.997005; 2 166892788 chr2:SNP:877 C T 1015 . DP=94;DP4=20,23,22,29;AD=43,51;TYPE=SNP;DBXREF=dbSNP:rs2298771,g1000:0.788538,esp5400:0.723782,ExAC:0.725,clinvar:rs2298771|2|255,MutationTaster:0; 2 166896143 chr2:SNP:878 T G 693 off_target DP=59;DP4=8,17,8,26;AD=25,34;TYPE=SNP;DBXREF=dbSNP:rs2126152,g1000:0.789337,esp5400:0.724218,ExAC:0.724; 2 166896178 chr2:SNP:879 C T 291 off_target DP=32;DP4=2,15,3,12;AD=17,15;TYPE=SNP;DBXREF=dbSNP:rs490317,g1000:0.15595; 2 166897864 chr2:SNP:880 A G 432 . DP=50;DP4=13,15,9,13;AD=28,22;TYPE=SNP;DBXREF=dbSNP:rs6432860,g1000:0.788938,esp5400:0.724205,ExAC:0.726,clinvar:rs6432860|2|255; 2 166897989 chr2:SNP:881 G A 177 low_coverage DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs199507113,esp5400:0.013458,ExAC:0.148; 2 166900411 chr2:SNP:882 C T 510 . DP=71;DP4=20,23,9,19;AD=43,28;TYPE=SNP;DBXREF=dbSNP:rs121918769,g1000:0.00139776,esp5400:0.000837,ExAC:0.001548,clinvar:rs121918769|1|255|2,MutationTaster:1; 2 166903188 chr2:SNP:883 A C 277 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs538921,g1000:0.946286; 2 166903228 chr2:SNP:884 C T 391 off_target DP=36;DP4=15,1,13,7;AD=16,20;TYPE=SNP;DBXREF=dbSNP:rs6432861,g1000:0.497804,esp5400:0.470986; 2 166903445 chr2:SNP:885 T C 452 . DP=55;DP4=12,18,10,14;AD=30,24;TYPE=SNP;DBXREF=dbSNP:rs7580482,g1000:0.709265,esp5400:0.63971,ExAC:0.703,clinvar:rs7580482|2|255; 2 166903660 chr2:SNP:886 T C 191 low_coverage;off_target DP=10;DP4=0,2,0,8;AD=2,8;TYPE=SNP;DBXREF=dbSNP:rs13383628,g1000:0.497804; 2 166904025 chr2:SNP:887 G A 430 off_target DP=30;DP4=10,0,18,2;AD=10,20;TYPE=SNP;DBXREF=dbSNP:rs11690959,g1000:0.493211; 2 166904346 chr2:SNP:888 G A 124 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs1461193,g1000:0.789537; 2 166905375 chr2:SNP:889 A G 418 off_target DP=62;DP4=26,12,13,11;AD=38,24;TYPE=SNP;DBXREF=dbSNP:rs1542484,g1000:0.498003,esp5400:0.475517,ExAC:0.522; 2 166905480 chr2:SNP:890 G A 559 off_target DP=69;DP4=19,21,15,14;AD=40,29;TYPE=SNP;DBXREF=dbSNP:rs994399,g1000:0.709065,esp5400:0.639665,ExAC:0.702; 2 166905572 chr2:SNP:891 T A 159 off_target DP=24;DP4=0,15,0,9;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs1542483,g1000:0.497804; 2 166909544 chr2:SNP:892 C T 184 low_coverage;off_target DP=19;DP4=7,3,4,5;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs3812718,g1000:0.493411,clinvar:rs3812718|255|6|6; 2 166909559 chr2:SNP:893 C A 182 off_target DP=20;DP4=8,3,3,6;AD=11,9;TYPE=SNP;DBXREF=dbSNP:rs3812719,g1000:0.709065; 2 166909695 chr2:SNP:894 A G 121 low_coverage;off_target DP=14;DP4=1,7,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs2217199,g1000:0.493211; 2 166914895 chr2:SNP:895 A G 120 low_coverage;off_target DP=11;DP4=5,0,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs7564306,g1000:0.480831; 2 167060449 chr2:SNP:896 A T 158 off_target DP=33;DP4=24,0,9,0;AD=24,9;TYPE=SNP;DBXREF=dbSNP:rs10180721,g1000:0.901358,esp5400:0.889588,ExAC:0.865,clinvar:rs10180721|2; 2 167060980 chr2:INDEL:56 GAAAC G 887 . DP=73;DP4=17,15,20,21;AD=32,41;TYPE=INDEL;DBXREF=dbSNP:rs77944059,g1000:0.898762,ExAC:0.88,clinvar:rs77944059|2; 2 167082978 chr2:SNP:897 T C 259 off_target DP=31;DP4=17,0,13,1;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs7595255,g1000:0.890775; 2 167085141 chr2:INDEL:57 CTT C 220 low_coverage;off_target DP=19;DP4=10,0,9,0;AD=10,9;TYPE=INDEL;DBXREF=dbSNP:rs58519838,g1000:0.732029; 2 167089713 chr2:INDEL:58 A ATATG 237 off_target DP=32;DP4=17,0,12,0;AD=17,12;TYPE=INDEL;DBXREF=dbSNP:rs146040585; 2 167090042 chr2:SNP:898 G A 701 off_target DP=82;DP4=9,37,8,28;AD=46,36;TYPE=SNP;DBXREF=dbSNP:rs722204,g1000:0.760783; 2 167099158 chr2:SNP:899 A G 274 . DP=52;DP4=12,24,4,12;AD=36,16;TYPE=SNP;DBXREF=dbSNP:rs6746030,g1000:0.887181,esp5400:0.877892,ExAC:0.852,clinvar:rs6746030|,MutationTaster:0; 2 167137119 chr2:SNP:900 G A 533 off_target DP=38;DP4=1,12,4,21;AD=13,25;TYPE=SNP;DBXREF=dbSNP:rs6432893,g1000:0.545727,esp5400:0.564035,ExAC:0.43,clinvar:rs6432893|2; 2 167144974 chr2:SNP:901 A T 410 . DP=76;DP4=28,24,13,11;AD=52,24;TYPE=SNP;DBXREF=dbSNP:rs6747673,g1000:0.546725,esp5400:0.563963,ExAC:0.494,clinvar:rs6747673|255; 2 167144995 chr2:SNP:902 T C 445 . DP=83;DP4=30,26,16,11;AD=56,27;TYPE=SNP;DBXREF=dbSNP:rs13402180,g1000:0.354433,esp5400:0.387218,ExAC:0.373,clinvar:rs13402180|255; 2 167145142 chr2:SNP:903 A G 305 . DP=52;DP4=13,21,5,13;AD=34,18;TYPE=SNP;DBXREF=dbSNP:rs13414203,g1000:0.354433,esp5400:0.384985,ExAC:0.373,clinvar:rs13414203|255; 2 167149693 chr2:SNP:904 G A 236 off_target DP=35;DP4=20,2,10,3;AD=22,13;TYPE=SNP;DBXREF=dbSNP:rs7588632,g1000:0.741613,esp5400:0.695265,ExAC:0.56; 2 167159946 chr2:SNP:905 C T 180 low_coverage;off_target DP=16;DP4=0,7,1,8;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs13017637,g1000:0.290335; 2 167162277 chr2:SNP:906 G A 1486 off_target DP=59;DP4=0,0,36,23;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs4429487,g1000:0.732428,esp5400:0.752227,ExAC:0.718; 2 167163043 chr2:SNP:907 T C 1540 . DP=63;DP4=0,0,23,40;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs9646771,g1000:0.641174,esp5400:0.709726,ExAC:0.605,clinvar:rs9646771|255; 2 167163199 chr2:SNP:908 A T 356 low_coverage;off_target DP=15;DP4=0,0,3,12;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs9646772,g1000:0.649561; 2 167163663 chr2:SNP:909 C T 403 low_coverage;off_target DP=16;DP4=0,0,3,13;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs4447616,g1000:0.616014; 2 167168093 chr2:SNP:910 C T 1360 . DP=54;DP4=0,0,41,13;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs6432901,g1000:0.574281,esp5400:0.670316,ExAC:0.587,clinvar:rs6432901|255; 2 168986154 chr2:SNP:911 A G 512 off_target DP=54;DP4=9,17,15,13;AD=26,28;TYPE=SNP;DBXREF=dbSNP:rs925846,g1000:0.802915,esp5400:0.80264,ExAC:0.815; 2 168996775 chr2:SNP:912 T C 857 off_target DP=34;DP4=0,0,26,8;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2278785,g1000:0.489217,esp5400:0.353069,ExAC:0.366; 2 168997097 chr2:SNP:913 A G 587 off_target DP=24;DP4=0,0,19,5;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2278784,g1000:0.488019; 2 169020166 chr2:SNP:914 G A 252 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2292785,g1000:0.38139; 2 169020179 chr2:SNP:915 C T 454 low_coverage;off_target DP=18;DP4=0,0,18,0;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2292786,g1000:0.38139; 2 169403980 chr2:SNP:916 T C 222 low_coverage;off_target DP=14;DP4=4,0,10,0;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs150448529,g1000:0.0117812; 2 169763148 chr2:SNP:917 T C 385 off_target DP=39;DP4=11,9,12,7;AD=20,19;TYPE=SNP;DBXREF=dbSNP:rs560887,g1000:0.886981,esp5400:0.793084,ExAC:0.789; 2 169801488 chr2:SNP:918 A G 266 off_target DP=38;DP4=9,14,7,8;AD=23,15;TYPE=SNP;DBXREF=dbSNP:rs853789,g1000:0.855232,esp5400:0.750973,ExAC:0.714,clinvar:rs853789|2; 2 169820618 chr2:SNP:919 A G 245 low_coverage;off_target DP=17;DP4=6,0,11,0;AD=6,11;TYPE=SNP;DBXREF=dbSNP:rs4148796,g1000:0.288938; 2 169820619 chr2:SNP:920 T C 193 low_coverage;off_target DP=16;DP4=7,0,9,0;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs4148795,g1000:0.288938; 2 169826877 chr2:SNP:921 C T 179 low_coverage;off_target DP=14;DP4=0,5,1,7;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs2193831,g1000:0.596246,ExAC:0.478; 2 169828277 chr2:SNP:922 G A 168 low_coverage;off_target DP=8;DP4=1,0,7,0;AD=1,7;TYPE=SNP;DBXREF=dbSNP:rs2241341,g1000:0.596046; 2 169828325 chr2:SNP:923 A G 230 low_coverage;off_target DP=14;DP4=4,0,9,1;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs2241340,g1000:0.596246,esp5400:0.601392,ExAC:0.581; 2 169830155 chr2:SNP:924 G A 179 off_target DP=24;DP4=14,1,8,1;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs2287623,g1000:0.597045; 2 169830328 chr2:SNP:925 A G 496 . DP=50;DP4=8,16,10,16;AD=24,26;TYPE=SNP;DBXREF=dbSNP:rs2287622,g1000:0.588658,esp5400:0.602932,ExAC:0.579,clinvar:rs2287622|2,MutationTaster:0.924; 2 169842809 chr2:SNP:926 T C 832 off_target DP=34;DP4=0,0,11,23;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2287618,g1000:0.774161,esp5400:0.742753,ExAC:0.705,clinvar:rs2287618|2; 2 169997051 chr2:SNP:927 G A 364 . DP=29;DP4=1,11,5,12;AD=12,17;TYPE=SNP;DBXREF=dbSNP:rs990626,g1000:0.559505,esp5400:0.599926,ExAC:0.683,clinvar:rs990626|255; 2 170003432 chr2:SNP:928 T G 608 . DP=32;DP4=2,3,6,21;AD=5,27;TYPE=SNP;DBXREF=dbSNP:rs4667591,g1000:0.555911,esp5400:0.601785,ExAC:0.711,clinvar:rs4667591|255,MutationTaster:1; 2 170010985 chr2:SNP:929 T C 248 . DP=27;DP4=12,3,10,2;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs2075252,g1000:0.777955,esp5400:0.79894,ExAC:0.762,clinvar:rs2075252|255,MutationTaster:1; 2 170029657 chr2:SNP:930 C T 900 . DP=82;DP4=28,9,33,12;AD=37,45;TYPE=SNP;DBXREF=dbSNP:rs34355135,g1000:0.00379393,esp5400:0.005856,ExAC:0.005502,clinvar:rs34355135|255|2,MutationTaster:1; 2 170032989 chr2:SNP:931 C T 774 . DP=72;DP4=22,10,28,12;AD=32,40;TYPE=SNP;DBXREF=dbSNP:rs2229265,g1000:0.379593,esp5400:0.443577,ExAC:0.472,clinvar:rs2229265|255; 2 170050472 chr2:SNP:932 T C 204 off_target DP=21;DP4=0,11,1,9;AD=11,10;TYPE=SNP;DBXREF=dbSNP:rs2075248,g1000:0.523962; 2 170053505 chr2:SNP:933 C T 570 . DP=57;DP4=10,18,11,18;AD=28,29;TYPE=SNP;DBXREF=dbSNP:rs2228171,g1000:0.267971,esp5400:0.239914,ExAC:0.267,clinvar:rs2228171|255,MutationTaster:0; 2 170053580 chr2:SNP:934 C T 250 off_target DP=29;DP4=3,13,2,11;AD=16,13;TYPE=SNP;DBXREF=dbSNP:rs2302696,g1000:0.342851,esp5400:0.324098,ExAC:0.292; 2 170055255 chr2:SNP:935 T C 299 off_target DP=44;DP4=20,8,12,4;AD=28,16;TYPE=SNP;DBXREF=dbSNP:rs16823023,g1000:0.266374,esp5400:0.242517,ExAC:0.268; 2 170059190 chr2:SNP:936 T C 361 off_target DP=24;DP4=7,0,17,0;AD=7,17;TYPE=SNP;DBXREF=dbSNP:rs2239599,g1000:0.346645; 2 170070172 chr2:SNP:937 C T 963 . DP=79;DP4=20,12,28,19;AD=32,47;TYPE=SNP;DBXREF=dbSNP:rs4667596,g1000:0.0269569,esp5400:0.014222,ExAC:0.023,clinvar:rs4667596|2,MutationTaster:1; 2 170077170 chr2:INDEL:59 CA C 187 low_coverage;off_target DP=16;DP4=0,7,0,9;AD=7,9;TYPE=INDEL;DBXREF=dbSNP:rs36016897,g1000:0.105032; 2 170088351 chr2:SNP:938 G A 378 . DP=49;DP4=15,13,6,15;AD=28,21;TYPE=SNP;DBXREF=dbSNP:rs2302694,g1000:0.183706,esp5400:0.203476,ExAC:0.126,clinvar:rs2302694|255; 2 170129528 chr2:SNP:939 G A 1569 . DP=64;DP4=0,0,24,39;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs830994,g1000:0.609625,esp5400:0.617401,ExAC:0.624,clinvar:rs830994|255; 2 170129636 chr2:SNP:940 A G 286 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs830995,g1000:0.674321; 2 170134191 chr2:SNP:941 G C 1864 off_target DP=82;DP4=3,2,60,17;AD=5,77;TYPE=SNP;DBXREF=dbSNP:rs831003,g1000:0.764377; 2 170139346 chr2:SNP:942 C T 934 off_target DP=36;DP4=0,0,27,9;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs831010,g1000:0.832268,esp5400:0.828221,ExAC:0.83; 2 170139639 chr2:SNP:943 A G 1044 off_target DP=44;DP4=0,0,1,43;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs831011,g1000:0.754193; 2 170150671 chr2:SNP:944 G A 198 . DP=31;DP4=13,7,6,5;AD=20,11;TYPE=SNP;DBXREF=dbSNP:rs2229266,g1000:0.370208,esp5400:0.282859,ExAC:0.32,clinvar:rs2229266|255; 2 170151354 chr2:SNP:945 G A 277 low_coverage;off_target DP=11;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2673173,g1000:0.989816; 2 170163768 chr2:SNP:946 T C 209 off_target DP=26;DP4=11,4,8,3;AD=15,11;TYPE=SNP;DBXREF=dbSNP:rs2247506,g1000:0.205871,esp5400:0.245585,ExAC:0.199; 2 170175334 chr2:SNP:947 T C 783 . DP=71;DP4=18,15,20,18;AD=33,38;TYPE=SNP;DBXREF=dbSNP:rs2229263,g1000:0.30631,esp5400:0.340956,ExAC:0.278,clinvar:rs2229263|255,MutationTaster:0; 2 170218816 chr2:SNP:948 T C 857 off_target DP=34;DP4=0,0,28,6;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1559013,g1000:0.984625,esp5400:0.988694,ExAC:0.994,clinvar:rs1559013|2; 2 170218847 chr2:SNP:949 C G 1063 . DP=41;DP4=0,0,26,15;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs1559014,g1000:0.984625,esp5400:0.989514,ExAC:0.996,clinvar:rs1559014|255; 2 170336024 chr2:SNP:950 G C 1042 off_target DP=43;DP4=0,0,31,11;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs1879466,g1000:0.917532,esp5400:0.900074,ExAC:0.91,clinvar:rs1879466|2; 2 170339003 chr2:SNP:951 C A 312 low_coverage;off_target DP=12;DP4=0,0,1,11;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2353187,g1000:0.690096; 2 170355944 chr2:SNP:952 A T 555 off_target DP=22;DP4=0,0,20,2;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs12692909,g1000:0.382788,esp5400:0.372815; 2 170463551 chr2:SNP:953 T G 636 off_target DP=26;DP4=0,0,21,5;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2592813,g1000:0.347045,esp5400:0.350714; 2 170752775 chr2:INDEL:60 G GC 277 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=INDEL;DBXREF=dbSNP:rs56283141,g1000:0.976438; 2 170762487 chr2:SNP:954 C T 429 low_coverage;off_target DP=17;DP4=0,0,13,4;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs10171268,g1000:0.97504; 2 170770833 chr2:SNP:955 G C 286 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1031774,g1000:0.194688; 2 170782037 chr2:SNP:956 C T 597 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs1461958,g1000:0.976637; 2 170782338 chr2:SNP:957 C T 214 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs13016918,g1000:0.398562; 2 170783092 chr2:INDEL:61 CAAAAACA C 609 off_target DP=31;DP4=5,0,25,0;AD=5,25;TYPE=INDEL;DBXREF=dbSNP:rs140309188,g1000:0.454872; 2 170784049 chr2:SNP:958 G A 208 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs898851,g1000:0.730631; 2 170785129 chr2:SNP:959 A G 675 off_target DP=26;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs898849,g1000:0.976837; 2 170843469 chr2:SNP:960 T C 337 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2061620,g1000:0.975839; 2 170871976 chr2:SNP:961 A G 555 off_target DP=22;DP4=0,0,3,19;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs13028230,g1000:0.669129; 2 171678625 chr2:SNP:962 T C 380 . DP=36;DP4=11,6,14,5;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs769404,g1000:0.357228,esp5400:0.337765,ExAC:0.392; 2 171850201 chr2:SNP:963 G A 179 low_coverage;off_target DP=10;DP4=0,1,8,0;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs200288621; 2 171863724 chr2:SNP:964 C T 261 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2557795,g1000:0.949481; 2 171902604 chr2:SNP:965 A T 630 off_target DP=25;DP4=0,0,22,3;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs6751462,g1000:0.911542; 2 171912911 chr2:SNP:966 A T 363 low_coverage;off_target DP=14;DP4=0,0,9,5;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs17283147,g1000:0.663139; 2 172291616 chr2:SNP:967 C T 153 . DP=22;DP4=6,8,5,3;AD=14,8;TYPE=SNP;DBXREF=dbSNP:rs6751956,g1000:0.306709,esp5400:0.271293,ExAC:0.272,clinvar:rs6751956|3; 2 172306690 chr2:SNP:968 C T 174 low_coverage;off_target DP=11;DP4=0,3,0,8;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs78939846,g1000:0.230032; 2 172330393 chr2:SNP:969 A G 332 . DP=31;DP4=9,5,7,10;AD=14,17;TYPE=SNP;DBXREF=dbSNP:rs3731983,g1000:0.206669,esp5400:0.189069,ExAC:0.224,clinvar:rs3731983|3,MutationTaster:1; 2 172333295 chr2:SNP:970 C T 194 low_coverage;off_target DP=18;DP4=9,0,9,0;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs4668387,g1000:0.20627; 2 172336541 chr2:SNP:971 C T 728 . DP=91;DP4=34,19,24,14;AD=53,38;TYPE=SNP;DBXREF=dbSNP:rs3731981,g1000:0.20607,esp5400:0.187953,ExAC:0.224,clinvar:rs3731981|3; 2 172338194 chr2:SNP:972 G A 903 . DP=94;DP4=28,18,31,17;AD=46,48;TYPE=SNP;DBXREF=dbSNP:rs3795998,g1000:0.20647,ExAC:0.226; 2 172338300 chr2:SNP:973 T G 791 . DP=77;DP4=17,21,18,21;AD=38,39;TYPE=SNP;DBXREF=dbSNP:rs3821084,g1000:0.20607,ExAC:0.224; 2 172339964 chr2:SNP:974 C T 10000 . DP=142;DP4=0,0,69,72;AD=0,141;TYPE=SNP;DBXREF=dbSNP:rs888428,g1000:0.977436,ExAC:0.994; 2 172340049 chr2:SNP:975 T A 1317 . DP=144;DP4=32,43,28,41;AD=75,69;TYPE=SNP;DBXREF=dbSNP:rs12151641,g1000:0.20647,ExAC:0.228; 2 172340419 chr2:SNP:976 T C 1119 . DP=106;DP4=30,21,28,27;AD=51,55;TYPE=SNP;DBXREF=dbSNP:rs17221346,g1000:0.271765,ExAC:0.246; 2 172340736 chr2:SNP:977 C G 392 . DP=50;DP4=10,19,6,15;AD=29,21;TYPE=SNP;DBXREF=dbSNP:rs17221367,g1000:0.20647,ExAC:0.227; 2 172341327 chr2:SNP:978 A G 966 . DP=141;DP4=46,41,29,25;AD=87,54;TYPE=SNP;DBXREF=dbSNP:rs9789572,g1000:0.20647,ExAC:0.223; 2 172398311 chr2:SNP:979 T C 275 low_coverage DP=17;DP4=0,4,6,7;AD=4,13;TYPE=SNP;DBXREF=dbSNP:rs7586144,g1000:0.804313,esp5400:0.760178,ExAC:0.753; 2 172409721 chr2:SNP:980 C T 224 off_target DP=30;DP4=18,0,11,1;AD=18,12;TYPE=SNP;DBXREF=dbSNP:rs2542941,g1000:0.66893; 2 172411273 chr2:SNP:981 G A 297 . DP=34;DP4=5,14,4,11;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs10455,g1000:0.683107,esp5400:0.735174,ExAC:0.651,MutationTaster:0.835; 2 172644229 chr2:SNP:982 T C 245 off_target DP=31;DP4=5,13,5,8;AD=18,13;TYPE=SNP;DBXREF=dbSNP:rs2292813,g1000:0.791534; 2 172650382 chr2:SNP:983 G A 368 off_target DP=25;DP4=0,8,0,17;AD=8,17;TYPE=SNP;DBXREF=dbSNP:rs6745143,g1000:0.265775; 2 172712480 chr2:SNP:984 T C 157 off_target DP=29;DP4=4,15,2,8;AD=19,10;TYPE=SNP;DBXREF=dbSNP:rs2056202,g1000:0.757987,esp5400:0.77849,ExAC:0.809; 2 172725301 chr2:SNP:985 A G 482 . DP=60;DP4=17,18,15,10;AD=35,25;TYPE=SNP;DBXREF=dbSNP:rs1878583,g1000:0.790935,esp5400:0.815858,ExAC:0.857; 2 173339808 chr2:SNP:986 G A 712 . DP=77;DP4=23,17,19,18;AD=40,37;TYPE=SNP;DBXREF=dbSNP:rs11895564,g1000:0.251597,esp5400:0.315858,ExAC:0.281,MutationTaster:1; 2 173339915 chr2:SNP:987 G A 401 off_target DP=34;DP4=0,15,0,19;AD=15,19;TYPE=SNP;DBXREF=dbSNP:rs144532513,g1000:0.00119808; 2 173344474 chr2:SNP:988 A G 184 . DP=30;DP4=2,17,2,9;AD=19,11;TYPE=SNP;DBXREF=dbSNP:rs1920979,g1000:0.407149,esp5400:0.411415,ExAC:0.371; 2 173352458 chr2:SNP:989 C G 933 . DP=73;DP4=22,6,27,18;AD=28,45;TYPE=SNP;DBXREF=dbSNP:rs61748247,g1000:0.00459265,esp5400:0.006321,ExAC:0.005337; 2 173362970 chr2:SNP:990 G C 524 off_target DP=45;DP4=0,20,4,21;AD=20,25;TYPE=SNP;DBXREF=dbSNP:rs3792259,g1000:0.204673; 2 175431707 chr2:SNP:991 C G 242 off_target DP=26;DP4=14,0,12,0;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs2163236,g1000:0.528355; 2 175431990 chr2:INDEL:62 AAGAG A 296 off_target DP=53;DP4=16,21,1,15;AD=37,16;TYPE=INDEL;DBXREF=dbSNP:rs143689509,g1000:0.195288; 2 175432056 chr2:SNP:992 G A 217 off_target DP=26;DP4=0,15,0,11;AD=15,11;TYPE=SNP;DBXREF=dbSNP:rs2303891,g1000:0.146565; 2 175436940 chr2:SNP:993 G A 1058 . DP=42;DP4=0,0,25,17;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs4972450,g1000:0.907947,esp5400:0.919829,ExAC:0.941,MutationTaster:1; 2 175613600 chr2:SNP:994 T C 400 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2646159,g1000:0.883187; 2 175622178 chr2:INDEL:63 TGGG TGG 130 low_coverage;off_target DP=13;DP4=0,0,12,0;AD=0,12;TYPE=INDEL;DBXREF=dbSNP:rs11327107,g1000:0.73103; 2 175622788 chr2:SNP:995 G A 312 low_coverage;off_target DP=12;DP4=0,0,4,8;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2646164,g1000:0.998203,esp5400:0.99749,ExAC:0.999,clinvar:rs2646164|2; 2 175629021 chr2:SNP:996 C A 264 off_target DP=24;DP4=5,6,8,5;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs7560774,g1000:0.280751,esp5400:0.402907; 2 175665215 chr2:SNP:997 A G 623 off_target DP=24;DP4=0,0,0,24;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2600673,g1000:0.491214; 2 175666656 chr2:SNP:998 G A 367 low_coverage;off_target DP=15;DP4=0,0,1,14;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2646153,g1000:0.567093; 2 175711942 chr2:SNP:999 C T 224 low_coverage;off_target DP=10;DP4=0,1,0,9;AD=1,9;TYPE=SNP;DBXREF=dbSNP:rs14228,g1000:0.376797; 2 176983598 chr2:INDEL:64 CAAAACCAAAACA C 991 off_target DP=62;DP4=9,2,29,14;AD=11,43;TYPE=INDEL;DBXREF=dbSNP:rs143151088,g1000:0.241813; 2 176983610 chr2:SNP:1000 A C 234 low_variant_fraction;off_target DP=64;DP4=3,1,2,14;AD=4,16;TYPE=SNP;DBXREF=dbSNP:rs77946005,g1000:0.111621; 2 178301428 chr2:SNP:1001 C T 134 low_coverage;off_target DP=17;DP4=8,2,5,2;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs3754989,g1000:0.885383; 2 178305437 chr2:SNP:1002 A G 111 low_coverage;off_target DP=17;DP4=11,0,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs6732250,g1000:0.885184; 2 178362572 chr2:SNP:1003 G A 206 low_coverage;off_target DP=18;DP4=1,7,2,8;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs12468046,g1000:0.902556; 2 178402786 chr2:SNP:1004 G T 1219 off_target DP=135;DP4=51,20,44,20;AD=71,64;TYPE=SNP;DBXREF=dbSNP:rs3213945,g1000:0.135982,esp5400:0.078732,ExAC:0.115,clinvar:rs3213945|2; 2 178494012 chr2:SNP:1005 C G 465 off_target DP=50;DP4=21,5,18,6;AD=26,24;TYPE=SNP;DBXREF=dbSNP:rs6734683,g1000:0.660144; 2 178494520 chr2:SNP:1006 A G 210 low_coverage;off_target DP=19;DP4=0,9,0,10;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs12618542,g1000:0.696086; 2 178528703 chr2:SNP:1007 C T 241 off_target DP=23;DP4=3,8,3,9;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs13025391,g1000:0.832069,esp5400:0.796338,ExAC:0.858; 2 178534324 chr2:SNP:1008 A G 252 off_target DP=28;DP4=4,11,3,10;AD=15,13;TYPE=SNP;DBXREF=dbSNP:rs6433687,g1000:0.829473,esp5400:0.792712,ExAC:0.857; 2 178540293 chr2:SNP:1009 A G 431 off_target DP=35;DP4=5,7,10,12;AD=12,22;TYPE=SNP;DBXREF=dbSNP:rs3770016,g1000:0.704872,esp5400:0.693623,ExAC:0.797; 2 178545713 chr2:SNP:1010 C T 312 low_coverage;off_target DP=12;DP4=0,0,2,10;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs4538242,g1000:0.999201; 2 178565775 chr2:SNP:1011 A G 337 off_target DP=29;DP4=10,3,13,3;AD=13,16;TYPE=SNP;DBXREF=dbSNP:rs62182973,g1000:0.0219649; 2 178565815 chr2:SNP:1012 T C 574 off_target DP=43;DP4=6,9,16,12;AD=15,28;TYPE=SNP;DBXREF=dbSNP:rs10201180,g1000:0.761781,esp5400:0.763153,ExAC:0.77; 2 178576681 chr2:SNP:1013 G A 139 low_coverage;off_target DP=13;DP4=1,5,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs13428806,g1000:0.291933; 2 178681716 chr2:SNP:1014 G C 367 off_target DP=32;DP4=4,10,5,13;AD=14,18;TYPE=SNP;DBXREF=dbSNP:rs1438059,g1000:0.420727; 2 178682558 chr2:INDEL:65 A ATATAAAC 461 off_target DP=67;DP4=25,17,18,6;AD=42,24;TYPE=INDEL;DBXREF=dbSNP:rs3841879,g1000:0.417532; 2 178682603 chr2:SNP:1015 T C 610 . DP=61;DP4=12,17,20,12;AD=29,32;TYPE=SNP;DBXREF=dbSNP:rs6720891,g1000:0.418131,esp5400:0.424707,ExAC:0.333,MutationTaster:1; 2 178682655 chr2:SNP:1016 A G 520 . DP=60;DP4=8,22,16,14;AD=30,30;TYPE=SNP;DBXREF=dbSNP:rs3821010,g1000:0.418131,esp5400:0.42711,ExAC:0.333; 2 178684799 chr2:SNP:1017 T C 224 low_coverage;off_target DP=17;DP4=7,0,10,0;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs7581861,g1000:0.417931; 2 178684820 chr2:SNP:1018 G A 157 off_target DP=20;DP4=12,0,8,0;AD=12,8;TYPE=SNP;DBXREF=dbSNP:rs41440047,g1000:0.417732; 2 178684878 chr2:INDEL:66 A AAG 453 off_target DP=59;DP4=25,8,20,3;AD=33,23;TYPE=INDEL;DBXREF=dbSNP:rs144786387,g1000:0.284944; 2 178684879 chr2:SNP:1019 T G 400 off_target DP=53;DP4=20,10,20,1;AD=30,21;TYPE=SNP;DBXREF=dbSNP:rs58796031,g1000:0.284944; 2 178684921 chr2:SNP:1020 G A 627 off_target DP=72;DP4=25,14,17,16;AD=39,33;TYPE=SNP;DBXREF=dbSNP:rs13386827,g1000:0.285343,esp5400:0.304542,ExAC:0.241; 2 178685129 chr2:SNP:1021 C T 197 off_target DP=32;DP4=1,20,1,10;AD=21,11;TYPE=SNP;DBXREF=dbSNP:rs13386870,g1000:0.418131; 2 178705254 chr2:SNP:1022 G A 175 low_coverage;off_target DP=12;DP4=0,4,0,8;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs72948809,g1000:0.0595048; 2 178769982 chr2:SNP:1023 T C 117 low_coverage;off_target DP=12;DP4=1,5,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs72948873,g1000:0.00159744; 2 178769992 chr2:SNP:1024 T C 269 low_coverage;off_target DP=11;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2695096,g1000:0.971246; 2 178936373 chr2:SNP:1025 T G 10000 . DP=166;DP4=3,1,113,49;AD=4,162;TYPE=SNP;DBXREF=dbSNP:rs1435573,g1000:0.88738,esp5400:0.84142,ExAC:0.874; 2 178936614 chr2:SNP:1026 C T 2616 . DP=104;DP4=0,0,38,66;AD=0,104;TYPE=SNP;DBXREF=dbSNP:rs6433711,g1000:0.990216,esp5400:0.993307,ExAC:0.998,MutationTaster:1; 2 179296626 chr2:SNP:1027 G A 170 low_coverage;off_target DP=15;DP4=7,0,8,0;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs3997878,g1000:0.214856; 2 179296666 chr2:SNP:1028 T C 269 low_coverage;off_target DP=18;DP4=6,0,12,0;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs3997877; 2 179296821 chr2:SNP:1029 G A 473 . DP=68;DP4=19,22,11,16;AD=41,27;TYPE=SNP;DBXREF=dbSNP:rs3997876,esp5400:0.2058; 2 179300971 chr2:SNP:1030 G A 744 . DP=95;DP4=29,27,29,10;AD=56,39;TYPE=SNP;DBXREF=dbSNP:rs62176107,esp5400:0.162763; 2 179301046 chr2:INDEL:67 TCTGAAAAACAGAGATGAAGATTTAGACTCTTGACTAGGACTGGGTTCCAACACCCGTACCAGTATCATTAAAAGTACTTATTAAGCACTCACATTTAATATGTTATAAAGCATGTTTAAATGGATAACATTTGGTTAATTTTCCAATTTAAACAAGACAACATTAAAAAGTACACATTTAACAATACTATATGTTTTTAAGAAGCACTTGCAATAATATACTGAAAGCATTTTGTATTTTGTATAGTACAAATGTTTCTCAGTCAAGTTTTCTGATGGTCACATTAAGAGGTACAAGATATCTGGAAGCACCATAAGTAAATCCACAAATAATTAAATCTGCCTAATGGAGCAATTTGCAGATTAAAATATAGAACAATTTTCATATCTTTGGTTTTTTTTGTATTAAATACCAATCACTATAACTGACAGCTATCAAACAGGAAAAAAAACAGAAAAAAAAACTAAAAAAAACATGAAATGTGCGCGTTGGGTTTGAGGAACAAGTCATTCAAATAAATGACAGGATGTCAAAAAGTTCTTATCAGACTTCTATCCCAGAACCCAACTGAGTATTTTTTTCCTTTTTCTTTCTGCTTTTCCTCTTTCCTTTATCCTCCCCTATATCCTTCCCTTTTCATCTCTGTCCTTAGAATGCCTTATATTTCCATATTAGTTTATGGTTCTCAAATTGCTTTCATATGCCATTAATAAAAACAACTACTTTCTGAAGTAAGTAGGGTTACTACTCTTAATATTGTTTTATTAATGAGCACGACAGAGGGGAGGCAATTTCCAAAAGATTTTAGAGATGGCATGATATGGAATTAAGTAATTTATTAGATTTACCAAATAAAAATTTACATTATAGAAACTTTAAAATACTGTTTTTAAATAAAGAACACTATTTACATGGTTAAAAATATACATGCACTAAGAACAAATATATAATGAAGAGTACAGTCTCTTTTCCTTACCACCCATTCCCTGAAGACCTCTGTTCTATTTCTTAGACATACTGTTAAACATTTTTCAGTATCTTCCCATAAATGTTCTATGCATATGCAAGCACACACAATCTTTTAAAGCAAATGATAACTTACTCCTCTACATCTTGTTCATTTTTCTTTTATCAGTGCACATATATGCACTGTATTTACCTTACGGATCTCCAACTGTGAGCTTTAGGTTGTTTCTAGTTTCTTGCTTTTACTAGCAATAAACACTCTTTTGCACTTGAATGAGTTTCTCTGTAGAATTATTTCTAGAAGTGGAACTGCTAAGTCAAAGAACATGTACACTTTTAATTTTGATAAATACTTCCAAACTGATTTCTGAACCAATTTATACTCCTACCAACTGTCTTGGAGGGGGCTTGTTTTCTCATACCCTCACTAATACCAGCTATTATCAAATTTTGTAGTTTTTGCCAATCTAAAAGGTGAAAATATTTTATCTTGCATGAATAAAGTTGAATATTTTTTCTTTTTTTCCCTTAATCGTTTGCATTTCTTCTACTGGGTTGTCTTTTTAACTGATGCATAAGAGCTTTTTAAATTTTCTCTTTTTTAAGAGTTAGGATCTTGCTGTGTGGCTTAACTCTCAAACTCTTGGGCTCTAGCAGTCCTCCCACCTTAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCTGCTGTGTGCAGCAGATGTGTACAAAAGAGCTTTAAAGGTAGTACTGAAAACAGTTCCTTTATAGTTCTATGTTGAAAATAATTTCTTCCCACTTTTTTATTGTCTTAATTTACAGATTTTTTGCTGTGCAGTAGGTTTTATGTTGTCAAATGTATTAATCTTTTAACCTAGGTTTTAAGTTAAAATGCTTTCCCCATGCTAAGATTTTTAAAAAGAAAAACTCTTCCATGTTTCCTAATATTTATACTGTTTCAAATTTTTATGTTCAAATCTTTGATCCATCTGAAATTCACTTTGGTGTAAGGAATAAGGAAGCATTCTAAATAGATGTCATACACATCAACAAATATATATATATAGCCCCCACCCAAATGTGGATGTAAACTGTTTCTACATCATTATTGAATAATCCATCCTCTCACCCACTGATCTGAAATCTCACTGTTGCTATATACTATGGTCCTATGTGGATTAGCATCTACGCCTGGATTCTCTATTCGCTCCTCTGACTATTCCTGGCCCAGTAACTTGTCTGACAAGTTCAGTTTTACAGTATGTTTTGTTCTCTAGTAAAGCAGCACACCCTTGCTCTCCCAACTCTTCCTTTTCAGTTTTCTTGGCTATTCTTGAGGGTTTTTTTCCAGATAAACTTCAATAAACGTGTATCAAGGTCCAAAATGAACGCTGGTAGGTTTTTTTTTTTTTCGAGTTGGGGTCTCACTCTGTCGCCTAGGCTGGAGTGCAGTGGCGTGGATCTCTGCTCACTGCAAGCTCCGCCTCCCGGGTTCATGCCATTCTCCTGACTCAGCCTCCGGAGTAGCGGGGACTACAGGCGCACGCCACCAGGCCCGGCTAATTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGCGTTAGCCAGAATGGTTTCTATCTCCTGACCTCATGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCCAAACGCTGGTAGGTTTTGAGTGAGACCACATTACATTTAAATATATTTACAATGTTTTCTGCTCTATTCTTTAGTAGACTTTTCCTCACGTGGTCCTACGCATTTCTTTCTAAGTTTATTTTCATATAGCCTATCCCTGTCTACAATTTAAATTGGGATCTTCTATATTCTAGTTATTATTTGTAAATAAGAAAACTACTGACTTTTTTCTAGTATATTTTCTCAGAATAGGATTTTCTATTTTTCTATAAAATGACCAATGTTATGAAGCTTCGTAAGTTTTGTCAAAGTGATACACACATACAGCAAAAAATCAAATAGTACAGAAGTATAAAAGCAACAACCTCTGCCTTGCCCCTTCTCCACCTTCAGGTCCCCTTCCCAGATACAATAATTTTTAGCTTTTTATTTTTAATTATTCTGGTTGTTACCTACATAACTCTGGGCAATATGGAAAAGTTATTGATTTTGTATATTAATTTCATAATCAGTTACCTTGATGAATTCTCTTGTTTCTAGTAGTTTTTCTTTAGGGTTTTAAAGGGATACAATCATACCATTTGCAGTTAGTAACCATTTTATCTCCTCTTATTTCCAACTTCGTACTGTTTTCTCTTGTCTAATTTGTTTTTAATTGGTGGGTACTTCTAGAACAAGGTTAAATAAAAGTGGTGTTGGTGGGCGTCCTTATTTCTGATATTAATGGGAATGAGTATAATGTATAAATATATAACCATGATTTTGGTTTTTTTCCAAGTTTTTATCAGTAATGATTGCTGAGTTTTATCAAAATTTTTTTGGCATCCATTGAGAGGATTATATATTACTCTTTGACACATTAATGTGGTTAATTAAAGTAACCAACTTATTAACCTTGAAATAGTCTTAGTTAAATAAACCCTACTTGTCAATGCTATATCATTATTTTAATATTGTACTGAACATTTTACAAAGGTGTTTCACCATAAGGCATATTGATCTGTAATTTTTTTTTTTCTGTTGAACTTGCTATTGTCAGGTTTTGGTGTATTATGTTGGTTTTGGAGAATAAATTTAAAAGTTTCCTTTATGTTATCTATACATTGCCTGAAAAGAGTTTAAATAGCATTGAAAATGATCTCTTCTTTGAAGATTTAACCAATTTCACCTGTAAATCTGTCTGTGCTTTGTAATTTTGGTGATACTGTTGACTCAAATTCCAAAAGCAGTAAATGCAGTGTTTTATATTTTTCTATTAAAAATGTAAAATCAAATTATATTACTCATTTGTATATAGTCTTTGATTTTTTTCTAAAGAATGAGCCCTTATTTTATCATAAGCTCAGTGAAGAAGTTGCTACAGTTGTACTTTTTTATTTCCCACCTAATACACTACTCTCAGATAATGTACCACATGACACACCTATCTGTGAATATCAGAATCTGAAGTTATATATCATGTGTAGGCCAATCTCTTAAGCTCTGAATTTATTTGTTCAGCTACTCGATATATTCACTTAGCTATTCCATAAGCTATTCCATAAGCACTTCAAATTCAATATATTTAGTTCATTATCTGCTCCCCTCTTGCTATTGCCAAGTTTAAAATAGTAATTTCCTCCCTTTCCCTTGCTTCCCACATCCAATCAATTACCATGCCCCTTTACCTCAGTTTTCTAAATAACTTTAAAATCTACCCATCTCTCTCCATTTTCCCAGCCACTACCTTAGTTCAAGCTGTCATGTCTCACGTGTCTTCTGTAACAGCACTCTCGCAGGTCTCTTTGATCCTAATTTCACTCACTTACCATAATGCAGCCAAGTGATTTCCTTGTAATGTATAGACTAGATCCTGTCCTTCCCAGATTAAAATTCTTTAATGACTTTGTACTACCCTTGGGATAAAGTTCACTTTCCTTATATAGGGGTCCCTTTAAGATTTAATCCCTCTTTACTTTGCTGGCCTCATTGAGACTCCCTCCCTCCAACACTATGTTCTACACACAACAAATCACTTAGGGCTCCTAGACTGCATACGATGTTTCACTCCTGGCCTTTGCACACGCTTTTTCTTCTCTCTGGAATTCTTTTCCCCCATTCTACAGGTCTTGGCTTAGACATTACTTCTTCCTGGAATCTGTCTCCAAACCTGTTTTTGTTGGATGCCTTCTTCTATGTTCCCACATCACACTCTGTAAGGACTAGCCTATAGAATTCCTTCCTTTCAGTAGTCTATAAACTCCTTAGAGGCAGGGACTGCTTATTCACTGCACCCCAGTACCCAACACAACACTTAGCACACAGTATGAGCTCACTAAATGTTTGCTAAGTGAATGAATGAACAAACAAAGGGATGGAAATGCGCTGTCACTTTGAAGGCAAAAATGGCACTACTGGCCTATCATCTTTAGATCCCGTCCTATTATTCTGAATTTGACTGTGTCTCCCAAGCTCTCTTACCTAATTGCCTCTGTGATCCTGACTCACAAACAGGAAGCAGCTAAAAATGGGGTAGGGTATAACTGAATAATGAAGAGATTTCTAAAAATCACAACTCTGAAGTAGCTATAGAATAAGAAATCAAGGAAAGTTTCCTACTGCAAGAAATGCTTAATGACATTAACATCATAGCTGTCAACATTACTCAC T 740 . DP=77;DP4=14,27,30,6;AD=41,36;TYPE=INDEL; 2 179306430 chr2:INDEL:68 TCCTGAACAAAGAAAAAGAAATGGTAGATTTAGAAAAGAAATTAGTGTCCACAGAGGATGATCAAACGTATGAAGTACTGTGTTTAATCAGAGAACCTCACGGTTTTTATTATATACTAGACTATGTTCTTACTGACCTGATAACTTTGTTTGTTATGCTATTTTGTTTGTATAGCTATTAATTCTTTTTTTTTTTTTTTTTGAGACGGACCCTCACTTTGTCACCAGGCTGGAGTGCAGTGGCACCATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCAAGTAGATGGGATTACAGGTGCCCACCACCACACCTGGCTGATTTTTTGTATTTAGTACAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAACTCCTTACCTCATATGATCGGCCCACCTCAGCCTCCCAAAGGGCTGGGATTATCAGTGTGAGCCACTGTGCCAGGCCTGTATAGTTACTAATTCTTACACTTTTGAAGACATTTGTTTTAAGTTTTTCTTTAATAGTTATGCTTTCTGTTTTTCTATAATAATTGTATTTTCCTATGTCTAGCATTACTGAACCATATTTGGTTTAATTCTGACCAATTATTTAGATTTATTAAAATACATCTGAATTATAACTCCTCTCTCTCAATGTCTATTTCCTGCTTATGATCTTCTCTAAACTGACGATTATATGAAATTCCTTTTAACAGGAATAAGAAAGGCACAGGGGATGGTGGAGTTGAAAGATACCATAAATATCTACCTCCATGCTTTTGTTTTATAGATTAAAAAACTGAGGTCCAGAGAAATTAAGTAATTTGCTTAACTTCGCGAATCAAGGACTGCATCAAGGACGGAAGCTGAGGTTCCTGCTTTTGGCCTGGTGCTTTCTGTACTGGCCACACTACCTCCCAAAGGCAAATAGTTTCTTATTACTTGAAACTATTATCTAGCTAAGCTAAAATCCCATTTTAAGCCACTTTTGAAAATAACAAAAACATGCCAGAGAAGTTAACAGGAATTCTCGCTAGTACTTTTTAAAGTGACAGCGTTTCTTATAGTTTATATCCTTTATAACATAGAAGTTGCTATAATTAAGAAAGATAATTTTCATTTTTATCTCACTGCAATTATTTGCCATGTAGTCTCTTATTAATCATATAATTTTCAAGTGTAATCTTCCTCTAGTCCTATTTTCTAGATAGAATAGCTGTTAAAATCCAAGAGATTTACTATAGCTTTTTCTCCAAATTGAGGTTTTTTAAGTCAGTAATTTATCAATGAAGACTGTTTAAAGTACAGAGCCAACAGTTTGTCTTTCTATTAATAATCTATGATTTTTAAAAATATCAAATTAAGAAGACTAAGTATCTTAAGCCAAATATTTATACTTAAGTTCAACCTCAGAAAGTCAGAGACAATAAAAGAGGAGTGTATCAATTTTTCTGCATAGAAATATTTGAAAACATTACGACAGAAATTTCGATAGTCATTCATCATCTGAAAATATTTCAAATGCCTTTAATTGTAAGAAATAAGTA T 1210 . DP=156;DP4=40,53,16,46;AD=93,62;TYPE=INDEL; 2 179309165 chr2:SNP:1031 G A 919 . DP=70;DP4=21,5,28,16;AD=26,44;TYPE=SNP;DBXREF=dbSNP:rs75862065,esp5400:0.007994,MutationTaster:1; 2 179309227 chr2:INDEL:69 GCTAAATATTTTTTAAAAGTGTTATAAAACAAAATAATTTCCCCCGAATTATGAAATAAATGACAAGCATTTTCTAATTAACTCTCTATGTCTTTGCTCTTGTCATTCCTTCTACATGGAATGCCCTTTTCTCAGACCTCTTCTATGGGAATCTGATCGGTCATCCAAGATATATCTCAAATGTCACTTCCTCCAAGAAGCCTATCCTTTTACCCCAGTGGTTTATAATCTCTCCCTTCTTTGAAACATTATAACACATGGTTTAATCCTTTCTTGAAATTGTTTTACCATAAATTATATACTCTTACAAATACATATAATTTGTCCATCCTTCACCACACCTCTCCCCTGTTCAGACAGTAAGCTCCTTGAGGTAGGGCCTATGTATCACTTACCTACATAAGCTTTGTGGTGTTTTGTACATAATAGGCATGCCATAAAAATGTATTTAAAGAATACTCTGTTACAACTATACAAAAAACAGAAGAGTAACAATGATCCAGAAAATTTAGCCTGGCAATGTGAATAATACAGATTATGTGTAAATACTGTTTTTTCATCCACAGAACTATGAAGAGAGATCTGTTTGATCTATCATCTGCTCAGTGCTGGGATAATCCTCTAAGATTTACATGTATCCTGCAGAAAATAGATGGCTTAGATGAATTTGGTTTTAGCAAGTGGGGATTATGATTAGGGAAAAAGAGAACAACCTCTTCTAGGGAGTCTGGAATTACTAGTTACTTAGCAGGTCAGTACTTAAAACTGAATAAGCGGCATTTCAAGGTTAGTACCACCTAGGCAACTGGAGTCATTTTTCCATGACAAATGAGGTTTAGTTATTGCCACTTCCTCAAGGTTTTTTTTTTCCAACTGTGAGAATTTCAAGCTTTACATAGGCTGATGAGATATGAGTATTCACTTACAATGCTGCATGCCGAAGCTACCCAAATAATTGTGATGGAGAAGTGAGAAAGTCTCTGTATTAAGTCAGGCCACTTTAGGCCTGATTACAGCTTAGTAATTCCCATTTTATCTGTCAAGAAGCACAAATATAGTAAAGTTTGTTAGCTTTTTTTGCTGACAAAGTGCCAAGATGCAGAAAGGACACTCCATACCCCTCATTTCTACAAATGTACTTAATGGTTGGGTTCACCTTCAGGCTATACAGAAACAGCATGGCCATCACCAGTGGGGGAGAACCCAATACCTGCCATGTCATTTGGCATGTCTTTTTTTTGTTTGTTTGGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGCGCGATCCCAGCTCACTGCAACCACTGCCTACTGGGTCCAAGGAATTCTCGTGTCTCAGCCTCCCAAGCAGCTGGGATTACAGGAGCGTGCCACCACACTCGGCTAATTTTTTGTATTTTTAGTAGAGACGAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACTCAAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCTGGCCTTGTTTTTCTTTGAGGCAGGGTTTCACAGGCTGGAGTGCAGGGGCACAATCTTAGCTTACTGCAATCTCCGCCTCCCGGGTTCAAGCGATTTTTGTGCCTCAGCCACCCAAGTAGCTGGGATTACAGGCGCCTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCCGCCCAGCCTGGCATAGATCAATTATAATGCATGACCCTAGAGAATCAAGCATCATCTTGTGAAATGCAAGGCTTGTCTTGGGCAGCTGCTTATCTAGAGGGTTGCCATGTCACTGGTTAGTTCTAAACTACCCAAACGGTTTAGAATGATTTACAAAAAGAGAGGAATACTACATGAGAACCTAACTACACCCCTAATCCAAAAGCCTTTCTATGACTAGGGAACAAAAAACCCATCCCAAATTCCCTGGGTCTCTACTGTCAACTATAAGCTGATTACACAGATCGTACTTCAGGCATATGTAAGTGTATGCACAAGAAGAACTTGAAAGCATGCCAAGCTCCAGAGTGCACCCAGTGGACACTACTTTAATATGTGAGATGCTCCAGGACCAATATTCTATCTAGAAACACCTAAAGTAGTAAAAAATCTATCCCAGCACTTTGGGAGGCCGAGGCTGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGACTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAATCTTACTTTAGAAAGATATGTCAAGAATTAATATCCCACTTAACATTCTCTTCTTTTGGTATACATTATATAATAAAAGAAAACCTCTGCCTGCTTCTTCAAAATTAGAATTCCCAAAAGAGTACTTTTAGTGGATCTTTCTCCATCTCACACTTTGTTTTCTTCAATGTAGAAATAATCAAAGTCTAAATACAAAATGTTAATATTAATATTTGCAAGAAGCACTGATTTTCTACTGTTGTATCCCATTAAAAAAAAAAAAACAGTAAAGCCTAGTTCATGAGCACCTTCATTTAATAGCTAATTGCTGGATTTGATTGGATAAAGTTTTCTTTAATGGATGATAAGTTTTCATAAGGAAATAGAATTTGAGAGGTAGGATGCTAACAACTGTTCACTTTGTTGCTTTTGTAAGCATGTTCAAATTTTTAATCTTACCTCAGCCATGATATTTTTGAGCTGCTGAATACAAAGAAATTTAGCTCAC G 1313 . DP=117;DP4=33,21,32,30;AD=54,62;TYPE=INDEL; 2 179312235 chr2:SNP:1032 A G 1196 . DP=95;DP4=26,11,29,29;AD=37,58;TYPE=SNP;DBXREF=dbSNP:rs79211948,MutationTaster:1; 2 179315138 chr2:INDEL:70 ACTGCAAAAACCACAAAAAGGTGTGCTTTGCATGCCAAATTGGAGATTGAAGCAGAAGCGTAGAGGCCAGTTTTAACCGCCACCGACGGTGACGAGGGAGGCGCCGAGTTCCCCGGAGGCCAGGGCCAGAGCTGGCGAGGCTGGGGCGCACCTGTCTTCCGGCCCCGCTGCGGCAGTCACTCCGCAGGAGCAGGCGGGGTGAGCGAGGTCTTTAGAGAGAGCACTTGAATGCGGGTAGGAGAGATTCTCAACAGAACAGGGCTGGCAGCAGCGCCGCAGCCTCTCAGGGAAAACCTGACGATCCCTTCCCGGGCGCGCCGACCGAGCGTCACCTCCGCCCGCCCCGCGCGCCGCCAGGGACCACGAGAGGGGCGGGGCCCGGCCGCAGACCCCAACCCTCGCCGCCGAGAGGGCGGGGCCGAGCACCCACAGCCGCGGAGGCGTGGGCGCCGGGCACGGCTTTACCCAGAATGCCTCTGGAGGGCCGGCTCCCCGCGCCCCGGCCCTGCCGCCCAACGCTCCCGGCCCTGGGGCCCTGACTGCCCGCACGCTGAC A 2514 . DP=184;DP4=29,40,56,58;AD=69,114;TYPE=INDEL; 2 179315734 chr2:INDEL:71 GGC G 2226 . DP=186;DP4=44,36,38,66;AD=80,104;TYPE=INDEL;DBXREF=dbSNP:rs141354030,g1000:0.238219; 2 179315781 chr2:SNP:1033 C T 833 off_target DP=139;DP4=41,50,19,29;AD=91,48;TYPE=SNP;DBXREF=dbSNP:rs62176113,esp5400:0.303555,ExAC:0.595; 2 179315890 chr2:SNP:1034 G C 314 off_target DP=54;DP4=7,29,2,16;AD=36,18;TYPE=SNP;DBXREF=dbSNP:rs80197731; 2 179315903 chr2:SNP:1035 G C 307 off_target DP=46;DP4=4,26,1,15;AD=30,16;TYPE=SNP;DBXREF=dbSNP:rs797021523; 2 179319402 chr2:SNP:1036 C G 214 off_target DP=21;DP4=7,3,7,4;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs115566439,g1000:0.00179712,esp5400:0.00804; 2 179325735 chr2:SNP:1037 C T 230 . DP=27;DP4=10,5,9,3;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs17304212,g1000:0.028754,esp5400:0.06603,ExAC:0.058,clinvar:rs17304212|2,MutationTaster:0.926; 2 179392080 chr2:SNP:1038 A T 127 low_coverage;off_target DP=18;DP4=4,7,3,4;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs16866373,g1000:0.209065,esp5400:0.123972,ExAC:0.173,clinvar:rs16866373|2; 2 179395067 chr2:SNP:1039 C G 1071 . DP=126;DP4=51,17,41,16;AD=68,57;TYPE=SNP;DBXREF=dbSNP:rs56207956,g1000:0.0509185,esp5400:0.086435,ExAC:0.067,clinvar:rs56207956|255|2; 2 179395958 chr2:SNP:1040 T C 1863 . DP=188;DP4=63,29,67,29;AD=92,96;TYPE=SNP;DBXREF=dbSNP:rs3813250,g1000:0.508187,esp5400:0.317793,ExAC:0.352,clinvar:rs3813250|2|2; 2 179396354 chr2:SNP:1041 G A 2381 . DP=258;DP4=75,58,73,52;AD=133,125;TYPE=SNP;DBXREF=dbSNP:rs3829748,g1000:0.231829,esp5400:0.140234,ExAC:0.182,clinvar:rs3829748|2|2; 2 179397561 chr2:SNP:1042 C T 2188 . DP=239;DP4=78,45,78,37;AD=123,115;TYPE=SNP;DBXREF=dbSNP:rs3829747,g1000:0.208666,esp5400:0.120211,ExAC:0.175,clinvar:rs3829747|2|2,MutationTaster:1; 2 179398823 chr2:SNP:1043 G A 2079 . DP=243;DP4=62,68,52,59;AD=130,111;TYPE=SNP;DBXREF=dbSNP:rs2857265,g1000:0.232029,esp5400:0.144054,ExAC:0.182,clinvar:rs2857265|2|2; 2 179406003 chr2:SNP:1044 C A 151 low_coverage DP=11;DP4=4,0,7,0;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs3731750,g1000:0.504593,esp5400:0.300719,ExAC:0.223,clinvar:rs3731750|2; 2 179406191 chr2:SNP:1045 C T 634 . DP=79;DP4=21,23,18,15;AD=44,33;TYPE=SNP;DBXREF=dbSNP:rs3731749,g1000:0.209265,esp5400:0.12089,ExAC:0.175,clinvar:rs3731749|2|2,MutationTaster:1; 2 179411665 chr2:SNP:1046 A G 274 off_target DP=24;DP4=9,2,11,2;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs2288327,g1000:0.327476,esp5400:0.19848,ExAC:0.226; 2 179413110 chr2:SNP:1047 G A 1356 . DP=148;DP4=45,32,38,33;AD=77,71;TYPE=SNP;DBXREF=dbSNP:rs3731748,g1000:0.234225,esp5400:0.142604,ExAC:0.184,clinvar:rs3731748|2|2; 2 179414853 chr2:SNP:1048 A G 1236 . DP=147;DP4=49,32,39,27;AD=81,66;TYPE=SNP;DBXREF=MutationTaster:1; 2 179421694 chr2:SNP:1049 A G 330 . DP=36;DP4=10,9,9,8;AD=19,17;TYPE=SNP;DBXREF=dbSNP:rs9808377,g1000:0.507188,esp5400:0.31778,ExAC:0.35,clinvar:rs9808377|2|2,MutationTaster:1; 2 179427118 chr2:SNP:1050 G T 296 . DP=35;DP4=11,8,9,7;AD=19,16;TYPE=SNP;DBXREF=MutationTaster:1; 2 179427186 chr2:SNP:1051 A G 443 . DP=43;DP4=9,10,11,12;AD=19,23;TYPE=SNP;DBXREF=dbSNP:rs2366751,g1000:0.508786,esp5400:0.31668,ExAC:0.351,clinvar:rs2366751|2|2; 2 179427536 chr2:SNP:1052 T C 687 . DP=77;DP4=28,13,25,11;AD=41,36;TYPE=SNP;DBXREF=dbSNP:rs3829746,g1000:0.508387,esp5400:0.319524,ExAC:0.35,clinvar:rs3829746|2|2,MutationTaster:1; 2 179430997 chr2:SNP:1053 G A 1408 . DP=165;DP4=50,40,37,38;AD=90,75;TYPE=SNP;DBXREF=dbSNP:rs3731746,g1000:0.342252,esp5400:0.216054,ExAC:0.234,clinvar:rs3731746|2|2,MutationTaster:1; 2 179436020 chr2:SNP:1054 G A 1265 . DP=105;DP4=13,30,14,48;AD=43,62;TYPE=SNP;DBXREF=dbSNP:rs744426,g1000:0.208067,esp5400:0.120997,ExAC:0.174,clinvar:rs744426|2|2,MutationTaster:1; 2 179444768 chr2:SNP:1055 C G 1209 . DP=48;DP4=0,0,21,27;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs4145333,g1000:0.994609,esp5400:0.996024,ExAC:0.999,clinvar:rs4145333|2|2,MutationTaster:0.085; 2 179444939 chr2:SNP:1056 C T 277 . DP=23;DP4=8,2,7,6;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs2303838,g1000:0.351238,esp5400:0.222583,ExAC:0.242,clinvar:rs2303838|2|2,MutationTaster:1; 2 179447848 chr2:SNP:1057 T C 1308 . DP=155;DP4=45,37,35,37;AD=82,72;TYPE=SNP;DBXREF=dbSNP:rs4894029,g1000:0.513778,esp5400:0.321168,ExAC:0.352,clinvar:rs4894029|2|2; 2 179448911 chr2:SNP:1058 G A 272 off_target DP=46;DP4=29,1,12,4;AD=30,16;TYPE=SNP;DBXREF=dbSNP:rs16866400,g1000:0.357428; 2 179451420 chr2:SNP:1059 G A 238 . DP=34;DP4=7,14,4,9;AD=21,13;TYPE=SNP;DBXREF=dbSNP:rs2042996,g1000:0.507588,esp5400:0.311753,ExAC:0.351,clinvar:rs2042996|2|2,MutationTaster:1; 2 179454394 chr2:SNP:1060 A G 954 . DP=89;DP4=32,9,34,14;AD=41,48;TYPE=SNP;DBXREF=dbSNP:rs1560221,g1000:0.51238,esp5400:0.320505,ExAC:0.354,clinvar:rs1560221|2|2; 2 179455207 chr2:SNP:1061 T C 557 . DP=60;DP4=15,17,17,11;AD=32,28;TYPE=SNP;DBXREF=dbSNP:rs2163009,g1000:0.51238,esp5400:0.318917,ExAC:0.354,clinvar:rs2163009|2|2; 2 179457147 chr2:SNP:1062 G A 251 . DP=26;DP4=6,8,5,7;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs16866406,g1000:0.213059,esp5400:0.124948,ExAC:0.177,clinvar:rs16866406|2|2,MutationTaster:1; 2 179458591 chr2:SNP:1063 C T 666 . DP=67;DP4=19,13,17,18;AD=32,35;TYPE=SNP;DBXREF=dbSNP:rs2288569,g1000:0.21246,esp5400:0.12487,ExAC:0.176,clinvar:rs2288569|2|2,MutationTaster:1; 2 179464527 chr2:SNP:1064 T C 181 low_coverage DP=19;DP4=5,4,3,7;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs1001238,g1000:0.51278,esp5400:0.321749,ExAC:0.353,clinvar:rs1001238|2|2,MutationTaster:1; 2 179472825 chr2:SNP:1065 T C 271 off_target DP=22;DP4=2,7,3,10;AD=9,13;TYPE=SNP;DBXREF=dbSNP:rs72646807,g1000:0.0107827,esp5400:0.016991,ExAC:0.015,clinvar:rs72646807|2; 2 179482347 chr2:INDEL:72 CTAAG C 203 low_coverage;off_target DP=15;DP4=5,1,7,2;AD=6,9;TYPE=INDEL;DBXREF=dbSNP:rs72677235,g1000:0.103634; 2 179523590 chr2:SNP:1066 C A 335 off_target DP=79;DP4=20,39,7,13;AD=59,20;TYPE=SNP;DBXREF=dbSNP:rs2366755; 2 179523611 chr2:SNP:1067 T C 255 off_target DP=77;DP4=20,41,7,9;AD=61,16;TYPE=SNP;DBXREF=dbSNP:rs62178969; 2 179523649 chr2:SNP:1068 A T 126 low_variant_fraction;off_target DP=70;DP4=19,42,4,5;AD=61,9;TYPE=SNP;DBXREF=dbSNP:rs72650059,g1000:0.00678914; 2 179528038 chr2:SNP:1069 A C 143 low_variant_fraction;off_target DP=54;DP4=26,19,5,4;AD=45,9;TYPE=SNP;DBXREF=dbSNP:rs12994774,esp5400:0.027938,ExAC:0.069,clinvar:rs12994774|2|2,MutationTaster:0; 2 179543217 chr2:SNP:1070 C T 241 . DP=52;DP4=15,21,8,7;AD=36,15;TYPE=SNP;DBXREF=dbSNP:rs35112591,g1000:0.238419,esp5400:0.151537,ExAC:0.174,clinvar:rs35112591|2|2; 2 179546449 chr2:SNP:1071 G A 584 . DP=80;DP4=24,24,15,17;AD=48,32;TYPE=SNP;DBXREF=dbSNP:rs374779534,esp5400:0.000106,ExAC:6.623e-05; 2 179547860 chr2:SNP:1072 A G 308 off_target DP=50;DP4=21,11,13,5;AD=32,18;TYPE=SNP;DBXREF=dbSNP:rs2303828,g1000:0.284944; 2 179558282 chr2:SNP:1073 T A 334 off_target DP=30;DP4=13,1,14,2;AD=14,16;TYPE=SNP;DBXREF=dbSNP:rs2255167,g1000:0.322284,esp5400:0.206211; 2 179558366 chr2:SNP:1074 T C 335 . DP=42;DP4=12,11,9,10;AD=23,19;TYPE=SNP;DBXREF=dbSNP:rs2042995,g1000:0.477835,esp5400:0.328693,ExAC:0.338,clinvar:rs2042995|2|2,MutationTaster:1; 2 179566038 chr2:SNP:1075 C T 429 off_target DP=45;DP4=12,11,11,11;AD=23,22;TYPE=SNP;DBXREF=dbSNP:rs16866440,g1000:0.0379393; 2 179566051 chr2:SNP:1076 C T 374 off_target DP=38;DP4=12,7,14,5;AD=19,19;TYPE=SNP;DBXREF=dbSNP:rs66521408,g1000:0.0383387; 2 179566146 chr2:SNP:1077 T G 1368 off_target DP=56;DP4=1,0,28,27;AD=1,55;TYPE=SNP;DBXREF=dbSNP:rs2251987,g1000:0.963858; 2 179578730 chr2:SNP:1078 G A 1994 . DP=195;DP4=48,45,57,45;AD=93,102;TYPE=SNP;DBXREF=dbSNP:rs2562839,g1000:0.444688,esp5400:0.266639,ExAC:0.305,clinvar:rs2562839|2|2; 2 179579093 chr2:SNP:1079 T C 1186 . DP=107;DP4=32,14,37,24;AD=46,61;TYPE=SNP;DBXREF=dbSNP:rs12693164,g1000:0.247005,esp5400:0.153007,ExAC:0.179,clinvar:rs12693164|2|2,MutationTaster:1; 2 179579212 chr2:SNP:1080 T C 910 . DP=72;DP4=6,22,13,31;AD=28,44;TYPE=SNP;DBXREF=dbSNP:rs2562838,g1000:0.483427,esp5400:0.306837,ExAC:0.317,clinvar:rs2562838|2|2; 2 179579822 chr2:SNP:1081 T A 1759 . DP=181;DP4=41,49,46,45;AD=90,91;TYPE=SNP;DBXREF=dbSNP:rs2562836,g1000:0.444489,esp5400:0.266114,ExAC:0.306,clinvar:rs2562836|2|2; 2 179580093 chr2:SNP:1082 A C 501 off_target DP=39;DP4=5,10,7,17;AD=15,24;TYPE=SNP;DBXREF=dbSNP:rs12622914,g1000:0.271565; 2 179580583 chr2:SNP:1083 T C 113 low_coverage;off_target DP=18;DP4=0,12,0,6;AD=12,6;TYPE=SNP;DBXREF=dbSNP:rs2562834,g1000:0.322684; 2 179582162 chr2:SNP:1084 C T 182 off_target DP=32;DP4=3,19,3,7;AD=22,10;TYPE=SNP;DBXREF=dbSNP:rs62178977,g1000:0.24401; 2 179582327 chr2:SNP:1085 C T 762 . DP=78;DP4=32,8,26,12;AD=40,38;TYPE=SNP;DBXREF=dbSNP:rs13390491,g1000:0.24381,esp5400:0.154956,ExAC:0.177,clinvar:rs13390491|2|2,MutationTaster:1; 2 179582537 chr2:SNP:1086 G T 162 . DP=26;DP4=1,16,0,9;AD=17,9;TYPE=SNP;DBXREF=dbSNP:rs2627043,g1000:0.444888,esp5400:0.268188,ExAC:0.305,clinvar:rs2627043|2|2,MutationTaster:1; 2 179582605 chr2:SNP:1087 A G 155 low_coverage;off_target DP=13;DP4=2,4,4,3;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs6750145,g1000:0.279153; 2 179583398 chr2:SNP:1088 T C 225 off_target DP=36;DP4=13,10,7,6;AD=23,13;TYPE=SNP;DBXREF=dbSNP:rs62178978,g1000:0.271565,esp5400:0.180067,ExAC:0.189; 2 179583496 chr2:SNP:1089 T G 509 . DP=83;DP4=31,23,16,13;AD=54,29;TYPE=SNP;DBXREF=dbSNP:rs16866465,g1000:0.238818,esp5400:0.149701,ExAC:0.176,clinvar:rs16866465|2|2,MutationTaster:1; 2 179585266 chr2:SNP:1090 C T 2165 . DP=86;DP4=0,0,36,50;AD=0,86;TYPE=SNP;DBXREF=dbSNP:rs2562831,g1000:0.982029,esp5400:0.981857,ExAC:0.995,clinvar:rs2562831|2|2; 2 179585393 chr2:SNP:1091 A G 200 . DP=20;DP4=0,10,1,9;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs2562830,g1000:0.460064,esp5400:0.281461,ExAC:0.308,clinvar:rs2562830|2|2; 2 179587130 chr2:SNP:1092 C G 929 . DP=106;DP4=31,26,27,22;AD=57,49;TYPE=SNP;DBXREF=dbSNP:rs12693166,g1000:0.247005,esp5400:0.157015,ExAC:0.178,clinvar:rs12693166|2|2,MutationTaster:1; 2 179587687 chr2:SNP:1093 T C 317 off_target DP=46;DP4=13,15,6,12;AD=28,18;TYPE=SNP;DBXREF=dbSNP:rs2742327,g1000:0.48722,esp5400:0.307786,ExAC:0.317; 2 179595117 chr2:SNP:1094 C G 119 low_coverage;off_target DP=10;DP4=2,2,3,3;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs17076,g1000:0.348043,esp5400:0.202574,ExAC:0.244,clinvar:rs17076|2; 2 179598228 chr2:SNP:1095 A G 364 . DP=29;DP4=6,6,10,7;AD=12,17;TYPE=SNP;DBXREF=dbSNP:rs12993099,g1000:0.0295527,esp5400:0.059444,ExAC:0.053,clinvar:rs12993099|2|2; 2 179600563 chr2:SNP:1096 G A 2086 . DP=88;DP4=0,0,44,44;AD=0,88;TYPE=SNP;DBXREF=dbSNP:rs2742348,g1000:0.981829,esp5400:0.98139,ExAC:0.995,clinvar:rs2742348|2|2; 2 179605180 chr2:SNP:1097 C T 654 . DP=62;DP4=20,10,25,7;AD=30,32;TYPE=SNP;DBXREF=dbSNP:rs746578,g1000:0.238818,esp5400:0.134262,ExAC:0.164,clinvar:rs746578|2; 2 179612913 chr2:SNP:1098 G A 1069 . DP=127;DP4=23,47,20,37;AD=70,57;TYPE=SNP;DBXREF=dbSNP:rs147513899,g1000:0.000199681,esp5400:0.001581,ExAC:0.001227,clinvar:rs147513899|255; 2 179614952 chr2:SNP:1099 A G 2195 . DP=89;DP4=0,0,41,47;AD=0,88;TYPE=SNP;DBXREF=dbSNP:rs10803917,g1000:0.97504,esp5400:0.9709,ExAC:0.993,clinvar:rs10803917|2; 2 179615887 chr2:SNP:1100 T C 934 . DP=36;DP4=0,0,10,26;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs922984,g1000:0.733027,esp5400:0.81477,ExAC:0.826,clinvar:rs922984|2,MutationTaster:0; 2 179615931 chr2:SNP:1101 C G 701 . DP=27;DP4=0,0,17,10;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs922985,g1000:0.97504,esp5400:0.970878,ExAC:0.993,clinvar:rs922985|2,MutationTaster:0; 2 179615994 chr2:SNP:1102 T C 783 . DP=32;DP4=0,0,18,14;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs922986,g1000:0.97504,esp5400:0.970802,ExAC:0.993,clinvar:rs922986|2; 2 179618019 chr2:SNP:1103 T A 294 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs3754953,g1000:0.804513; 2 179620951 chr2:SNP:1104 C T 173 low_coverage DP=8;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs7585334,g1000:0.804513,esp5400:0.899879,ExAC:0.849,clinvar:rs7585334|2,MutationTaster:1; 2 179621477 chr2:SNP:1105 C T 1838 . DP=73;DP4=0,0,17,56;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs6433728,g1000:0.999002,esp5400:0.999179,ExAC:1,clinvar:rs6433728|255,MutationTaster:1; 2 179623758 chr2:SNP:1106 C T 2491 . DP=99;DP4=0,0,57,42;AD=0,99;TYPE=SNP;DBXREF=dbSNP:rs2291310,g1000:0.808906,esp5400:0.898959,ExAC:0.851,clinvar:rs2291310|2|2,MutationTaster:0; 2 179623939 chr2:SNP:1107 T C 1913 off_target DP=76;DP4=0,0,30,46;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs6705594,g1000:0.998403,esp5400:0.998977,ExAC:1; 2 179628680 chr2:SNP:1108 G C 101 low_coverage;off_target DP=12;DP4=7,0,5,0;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs1484119,g1000:0.504393; 2 179629363 chr2:SNP:1109 T C 10000 . DP=130;DP4=0,0,76,54;AD=0,130;TYPE=SNP;DBXREF=dbSNP:rs4894043,g1000:0.973642,esp5400:0.968674,ExAC:0.992,clinvar:rs4894043|2|2; 2 179629461 chr2:SNP:1110 C T 2340 . DP=93;DP4=0,0,37,56;AD=0,93;TYPE=SNP;DBXREF=dbSNP:rs2291311,g1000:0.804912,esp5400:0.892824,ExAC:0.85,clinvar:rs2291311|2|2,MutationTaster:0.001; 2 179632710 chr2:SNP:1111 T C 240 off_target DP=29;DP4=11,5,6,7;AD=16,13;TYPE=SNP;DBXREF=dbSNP:rs2291313,g1000:0.503994,esp5400:0.680517,ExAC:0.665; 2 179634376 chr2:INDEL:73 GTA G 434 off_target DP=29;DP4=9,0,17,2;AD=9,19;TYPE=INDEL;DBXREF=dbSNP:rs72125115,ExAC:0.787,clinvar:rs794729235|2; 2 179634392 chr2:SNP:1112 A T 239 off_target DP=27;DP4=12,3,12,0;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs13388274,g1000:0.00179712,ExAC:0.04,clinvar:rs13388274|0|255; 2 179635789 chr2:SNP:1113 A T 269 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4893854,g1000:0.948682; 2 179635882 chr2:SNP:1114 C T 363 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs4894047,g1000:0.967851; 2 179639297 chr2:SNP:1115 C T 337 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs3816781,g1000:0.894169; 2 179642425 chr2:SNP:1116 G A 555 . DP=22;DP4=0,0,10,12;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs719201,g1000:0.911542,esp5400:0.945715,ExAC:0.959,clinvar:rs719201|2; 2 179643886 chr2:SNP:1117 A G 490 off_target DP=20;DP4=0,0,11,9;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2291302,g1000:0.919928,esp5400:0.949712,ExAC:0.96; 2 179643934 chr2:SNP:1118 A G 706 off_target DP=28;DP4=0,0,24,4;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs2291301,g1000:0.920128,esp5400:0.951276,ExAC:0.96; 2 179644035 chr2:SNP:1119 G A 1394 . DP=57;DP4=0,0,30,27;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs1552280,g1000:0.920128,esp5400:0.949507,ExAC:0.96,clinvar:rs1552280|2|2,MutationTaster:0.001; 2 179644855 chr2:SNP:1120 T C 2521 . DP=102;DP4=0,1,58,43;AD=1,101;TYPE=SNP;DBXREF=dbSNP:rs10497520,g1000:0.5002,esp5400:0.731363,ExAC:0.694,clinvar:rs10497520|2|2,MutationTaster:0.204; 2 179650701 chr2:SNP:1121 C T 941 . DP=124;DP4=37,34,31,22;AD=71,53;TYPE=SNP;DBXREF=dbSNP:rs6715406,g1000:0.204673,esp5400:0.332032,ExAC:0.319,clinvar:rs6715406|2|2; 2 179650954 chr2:SNP:1122 G A 225 off_target DP=20;DP4=0,9,1,10;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs6715901,g1000:0.276358; 2 179666830 chr2:SNP:1123 G A 347 off_target DP=27;DP4=8,2,12,5;AD=10,17;TYPE=SNP;DBXREF=dbSNP:rs68003004,g1000:0.0313498,esp5400:0.065254,ExAC:0.058; 2 179667090 chr2:SNP:1124 C T 236 off_target DP=25;DP4=0,13,0,12;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs3816849,g1000:0.703474,esp5400:0.600316,ExAC:0.619; 2 180311207 chr2:SNP:1125 G A 449 off_target DP=32;DP4=9,2,13,8;AD=11,21;TYPE=SNP;DBXREF=dbSNP:rs2271760,g1000:0.190495,esp5400:0.091002,ExAC:0.152; 2 180348245 chr2:SNP:1126 T G 319 off_target DP=31;DP4=1,14,1,15;AD=15,16;TYPE=SNP;DBXREF=dbSNP:rs2271759,g1000:0.359425; 2 180383498 chr2:SNP:1127 C A 106 low_coverage;off_target DP=15;DP4=1,8,0,6;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs4567894,g1000:0.767971; 2 182343278 chr2:SNP:1128 A G 260 low_coverage;off_target DP=18;DP4=6,0,12,0;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs155095,g1000:0.689297; 2 182346954 chr2:SNP:1129 C T 201 low_coverage;off_target DP=14;DP4=5,0,9,0;AD=5,9;TYPE=SNP;DBXREF=dbSNP:rs155098,g1000:0.6873; 2 182350743 chr2:SNP:1130 A G 280 off_target DP=32;DP4=5,11,5,10;AD=16,15;TYPE=SNP;DBXREF=dbSNP:rs155103,g1000:0.694089,esp5400:0.765556,ExAC:0.742; 2 182359613 chr2:SNP:1131 G A 318 low_coverage;off_target DP=13;DP4=0,0,2,11;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs165419,g1000:0.972045; 2 182360182 chr2:SNP:1132 T C 317 off_target DP=36;DP4=10,9,6,11;AD=19,17;TYPE=SNP;DBXREF=dbSNP:rs2305586,g1000:0.140575,esp5400:0.095273,ExAC:0.151; 2 182363613 chr2:SNP:1133 T A 220 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1349196,g1000:0.965655; 2 182374534 chr2:SNP:1134 A G 638 . DP=30;DP4=2,0,14,14;AD=2,28;TYPE=SNP;DBXREF=dbSNP:rs1143674,g1000:0.661542,esp5400:0.601572,ExAC:0.617; 2 182376546 chr2:SNP:1135 T G 196 low_coverage;off_target DP=8;DP4=0,0,1,7;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs1466109,g1000:0.973642,esp5400:0.975732,ExAC:0.993; 2 182387133 chr2:SNP:1136 A G 681 off_target DP=27;DP4=0,0,4,23;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs7602504,g1000:0.661342; 2 182394567 chr2:SNP:1137 A G 363 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs921257,g1000:0.772963; 2 182395345 chr2:SNP:1138 G A 958 . DP=38;DP4=0,0,19,19;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs1143676,g1000:0.790535,esp5400:0.70197,ExAC:0.737,MutationTaster:0; 2 182399097 chr2:SNP:1139 T C 1060 . DP=45;DP4=0,1,20,24;AD=1,44;TYPE=SNP;DBXREF=dbSNP:rs7562325,g1000:0.656949,esp5400:0.605505,ExAC:0.619; 2 182399497 chr2:INDEL:74 ATTTTTTTTTTT ATTTTTTTTTTTTT 226 homopolymer_region;off_target DP=56;DP4=17,3,25,10;AD=20,35;TYPE=INDEL;DBXREF=dbSNP:rs11418738,g1000:0.534744,ExAC:0.557; 2 182399638 chr2:SNP:1140 A G 1360 . DP=54;DP4=0,0,19,35;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs2124443,g1000:0.997404,esp5400:0.99833,ExAC:0.999; 2 182401566 chr2:SNP:1141 C T 454 low_coverage DP=18;DP4=0,0,13,5;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2368214,g1000:0.991414,ExAC:0.997; 2 182401752 chr2:SNP:1142 G A 564 . DP=49;DP4=14,8,16,11;AD=22,27;TYPE=SNP;DBXREF=dbSNP:rs1047307,g1000:0.381789,ExAC:0.411; 2 182402031 chr2:SNP:1143 C T 10000 . DP=146;DP4=0,0,56,90;AD=0,146;TYPE=SNP;DBXREF=dbSNP:rs1037623,g1000:0.991414,ExAC:0.997; 2 182402790 chr2:SNP:1144 G A 832 . DP=34;DP4=0,0,26,8;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs6747500,g1000:0.767572,ExAC:0.669; 2 182403792 chr2:INDEL:75 A AT 416 low_coverage;off_target DP=17;DP4=0,0,15,2;AD=0,17;TYPE=INDEL;DBXREF=dbSNP:rs57234957,g1000:0.991214,ExAC:0.997; 2 182403851 chr2:SNP:1145 G A 1235 . DP=49;DP4=0,0,31,18;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs10180793,g1000:0.991214,esp5400:0.992564,ExAC:0.997,clinvar:rs10180793|2; 2 182413259 chr2:SNP:1146 A G 1076 off_target DP=44;DP4=0,0,33,11;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs12997453,g1000:0.648363,esp5400:0.594924,ExAC:0.613,clinvar:rs12997453|2; 2 182413602 chr2:SNP:1147 A T 252 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs13003064,g1000:0.647963,esp5400:0.594441,ExAC:0.616,clinvar:rs13003064|2; 2 182521578 chr2:SNP:1148 G A 1840 . DP=71;DP4=0,0,47,24;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs1473295,g1000:0.507388,esp5400:0.400595,ExAC:0.518,clinvar:rs1473295|2; 2 182543455 chr2:SNP:1149 T C 571 . DP=22;DP4=0,0,1,21;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs1801262,g1000:0.770767,esp5400:0.672151,ExAC:0.696,MutationTaster:1; 2 183699584 chr2:SNP:1150 G C 371 . DP=60;DP4=22,17,13,8;AD=39,21;TYPE=SNP;DBXREF=dbSNP:rs7775,g1000:0.128395,esp5400:0.155419,ExAC:0.086,clinvar:rs7775|255,MutationTaster:0.988; 2 183699768 chr2:SNP:1151 G A 108 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs73977799,g1000:0.0902556; 2 183723722 chr2:SNP:1152 A G 211 off_target DP=25;DP4=0,13,0,11;AD=13,11;TYPE=SNP;DBXREF=dbSNP:rs6433992,g1000:0.578874; 2 183793383 chr2:SNP:1153 T C 756 off_target DP=30;DP4=0,0,24,6;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs9333279,g1000:0.621206; 2 183793398 chr2:SNP:1154 A G 706 off_target DP=28;DP4=0,0,25,3;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs9333280,g1000:0.704273; 2 183799558 chr2:SNP:1155 G C 479 low_coverage DP=19;DP4=0,0,6,13;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs9288088,g1000:0.703674,esp5400:0.631319,ExAC:0.761; 2 183827018 chr2:SNP:1156 G A 1741 off_target DP=73;DP4=0,0,35,37;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs2271671,g1000:0.619808,esp5400:0.576887,ExAC:0.705; 2 183851058 chr2:SNP:1157 C T 343 low_coverage;off_target DP=14;DP4=0,0,1,13;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs10185562,g1000:0.983626; 2 185463815 chr2:INDEL:76 C CCT 958 off_target DP=148;DP4=53,33,28,23;AD=86,51;TYPE=INDEL;DBXREF=dbSNP:rs147358574,g1000:0.324281,ExAC:0.342; 2 185798504 chr2:SNP:1158 A C 1736 off_target DP=67;DP4=0,0,14,53;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs4667000,g1000:0.48722,esp5400:0.424451,ExAC:0.57; 2 185800905 chr2:SNP:1159 A T 2629 . DP=108;DP4=0,2,73,33;AD=2,106;TYPE=SNP;DBXREF=dbSNP:rs12476147,g1000:0.619209,esp5400:0.576422,ExAC:0.645,MutationTaster:0; 2 185801747 chr2:SNP:1160 G A 1393 . DP=57;DP4=1,0,28,28;AD=1,56;TYPE=SNP;DBXREF=dbSNP:rs4667001,g1000:0.490216,esp5400:0.425103,ExAC:0.576,MutationTaster:0; 2 185801755 chr2:SNP:1161 A G 1418 . DP=58;DP4=0,0,25,33;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs4667002,g1000:0.786741,esp5400:0.77641,ExAC:0.794; 2 185801917 chr2:SNP:1162 A G 624 . DP=41;DP4=8,5,16,12;AD=13,28;TYPE=SNP;DBXREF=dbSNP:rs728534,g1000:0.159345,esp5400:0.13876,ExAC:0.193; 2 185802211 chr2:INDEL:77 C CACA 1797 . DP=78;DP4=4,2,45,26;AD=6,71;TYPE=INDEL;DBXREF=dbSNP:rs5836928,g1000:0.490415,ExAC:0.575; 2 185802243 chr2:SNP:1163 C A 2039 . DP=81;DP4=0,0,43,38;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs1366842,g1000:0.490016,esp5400:0.422504,ExAC:0.575,MutationTaster:0; 2 185802363 chr2:SNP:1164 A G 1394 . DP=57;DP4=0,0,26,31;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs12477430,g1000:0.704273,esp5400:0.683618,ExAC:0.713,MutationTaster:0; 2 188332692 chr2:SNP:1165 A G 396 off_target DP=55;DP4=6,28,5,16;AD=34,21;TYPE=SNP;DBXREF=dbSNP:rs8176592,g1000:0.299521,esp5400:0.339996,ExAC:0.294; 2 188343497 chr2:SNP:1166 T C 1109 . DP=100;DP4=20,23,25,32;AD=43,57;TYPE=SNP;DBXREF=dbSNP:rs7586970,g1000:0.281749,esp5400:0.323819,ExAC:0.293,MutationTaster:1; 2 189849773 chr2:SNP:1167 A G 378 off_target DP=40;DP4=13,7,16,4;AD=20,20;TYPE=SNP;DBXREF=dbSNP:rs3106796,g1000:0.370807; 2 189855674 chr2:SNP:1168 T A 437 off_target DP=51;DP4=19,9,12,11;AD=28,23;TYPE=SNP;DBXREF=dbSNP:rs2203601,g1000:0.370208,esp5400:0.344988; 2 189861031 chr2:INDEL:78 T TAC 209 off_target DP=22;DP4=2,3,8,2;AD=5,10;TYPE=INDEL;DBXREF=dbSNP:rs141685938; 2 189862048 chr2:SNP:1169 G C 579 off_target DP=54;DP4=10,15,8,21;AD=25,29;TYPE=SNP;DBXREF=dbSNP:rs7579815,g1000:0.128994,esp5400:0.168991,ExAC:0.126,clinvar:rs7579815|2; 2 189862097 chr2:SNP:1170 G A 488 . DP=48;DP4=6,18,4,20;AD=24,24;TYPE=SNP;DBXREF=dbSNP:rs7579903,g1000:0.128994,esp5400:0.167224,ExAC:0.126,clinvar:rs7579903|2|2; 2 189862203 chr2:SNP:1171 C T 416 low_coverage;off_target DP=17;DP4=0,0,5,12;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs3134654,g1000:0.989617; 2 189864582 chr2:SNP:1172 T C 967 . DP=110;DP4=32,27,20,31;AD=59,51;TYPE=SNP;DBXREF=dbSNP:rs1801184,g1000:0.212061,esp5400:0.2878,ExAC:0.222,clinvar:rs1801184|2|2; 2 189866199 chr2:SNP:1173 T A 1105 off_target DP=91;DP4=20,17,30,24;AD=37,54;TYPE=SNP;DBXREF=dbSNP:rs2271682,g1000:0.776358,esp5400:0.698178,ExAC:0.759,clinvar:rs2271682|2; 2 189867205 chr2:SNP:1174 G A 103 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs3106801,g1000:0.371406; 2 189870246 chr2:SNP:1175 A C 546 off_target DP=76;DP4=16,28,11,19;AD=44,30;TYPE=SNP;DBXREF=dbSNP:rs7583195,g1000:0.0846645; 2 189871822 chr2:INDEL:79 AATATATATATATATATATATATATAT A 119 off_target DP=35;DP4=8,18,0,7;AD=26,7;TYPE=INDEL;DBXREF=dbSNP:rs372176675; 2 189874873 chr2:SNP:1176 C A 250 off_target DP=23;DP4=11,0,11,1;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs10204508,g1000:0.204473,esp5400:0.247816,ExAC:0.202,clinvar:rs10204508|2; 2 189875237 chr2:SNP:1177 T G 212 off_target DP=28;DP4=11,6,4,7;AD=17,11;TYPE=SNP;DBXREF=dbSNP:rs35162377,g1000:0.0603035; 2 189875421 chr2:SNP:1178 T G 10000 . DP=165;DP4=0,0,99,66;AD=0,165;TYPE=SNP;DBXREF=dbSNP:rs1516446,g1000:0.996605,esp5400:0.994423,ExAC:0.999,clinvar:rs1516446|2,MutationTaster:0.018; 2 189876138 chr2:SNP:1179 A C 133 off_target DP=20;DP4=12,1,7,0;AD=13,7;TYPE=SNP;DBXREF=dbSNP:rs13028444,g1000:0.204673; 2 189899541 chr2:SNP:1180 T C 415 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs4666770,g1000:0.844848; 2 189899572 chr2:SNP:1181 T C 649 off_target DP=25;DP4=0,0,25,0;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs7420715,g1000:0.844848; 2 189901295 chr2:SNP:1182 G A 227 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs12693526,g1000:0.643371,esp5400:0.711985,ExAC:0.699,clinvar:rs12693526|2; 2 189907937 chr2:SNP:1183 A G 563 . DP=23;DP4=0,0,10,13;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs6434312,g1000:0.940895,esp5400:0.970998,ExAC:0.954,clinvar:rs6434312|; 2 189917237 chr2:SNP:1184 T A 267 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs62184178,g1000:0.640176; 2 189917238 chr2:SNP:1185 T A 202 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs62184179,g1000:0.640176; 2 189917239 chr2:SNP:1186 T A 312 low_coverage;off_target DP=12;DP4=0,0,2,10;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs62184180,g1000:0.640176; 2 189918337 chr2:SNP:1187 T C 429 low_coverage;off_target DP=17;DP4=0,0,2,15;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6750027,g1000:0.807508; 2 189918787 chr2:SNP:1188 C T 1084 off_target DP=43;DP4=0,0,16,27;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs6738371,g1000:0.640375; 2 189923104 chr2:SNP:1189 A G 597 off_target DP=23;DP4=0,0,11,12;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs7556733,g1000:0.943091,esp5400:0.962539,ExAC:0.959; 2 189923401 chr2:SNP:1190 T C 416 low_coverage;off_target DP=17;DP4=0,0,13,4;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs10178611,g1000:0.640575; 2 189923434 chr2:SNP:1191 A C 415 low_coverage;off_target DP=16;DP4=0,0,14,2;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs12989558,g1000:0.640575; 2 189925548 chr2:SNP:1192 T A 1322 off_target DP=51;DP4=0,0,21,30;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs6414122,g1000:0.942492,esp5400:0.961982,ExAC:0.959,clinvar:rs6414122|2; 2 189927506 chr2:SNP:1193 C G 580 off_target DP=23;DP4=0,0,20,3;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs7424947,g1000:0.829473; 2 189928999 chr2:INDEL:80 C CAAGTA 217 low_coverage;off_target DP=12;DP4=0,0,0,9;AD=0,9;TYPE=INDEL;DBXREF=dbSNP:rs150346155,g1000:0.941094; 2 189932831 chr2:SNP:1194 T C 1139 . DP=48;DP4=0,0,21,27;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs2229495,g1000:0.942891,esp5400:0.962168,ExAC:0.959,clinvar:rs2229495|; 2 189936687 chr2:SNP:1195 T G 303 low_coverage;off_target DP=12;DP4=0,0,9,3;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6434317,g1000:0.642572; 2 189953285 chr2:INDEL:81 A AAATG 275 low_coverage;off_target DP=13;DP4=2,0,11,0;AD=2,11;TYPE=INDEL;DBXREF=dbSNP:rs5837124,g1000:0.798323; 2 189974958 chr2:SNP:1196 G T 427 low_coverage DP=18;DP4=0,0,13,5;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4128539,g1000:0.888578,esp5400:0.940416,ExAC:0.932,clinvar:rs4128539|; 2 190430177 chr2:SNP:1197 A G 752 . DP=85;DP4=28,15,22,20;AD=43,42;TYPE=SNP;DBXREF=dbSNP:rs2304704,g1000:0.55012,esp5400:0.501487,ExAC:0.614,clinvar:rs2304704|2; 2 190444392 chr2:SNP:1198 T C 185 off_target DP=20;DP4=10,0,10,0;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs1123109,g1000:0.0970447; 2 190444630 chr2:SNP:1199 C G 222 off_target DP=27;DP4=6,9,5,7;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs1439816,g1000:0.659545,esp5400:0.687488,ExAC:0.786; 2 190445194 chr2:SNP:1200 G C 286 . DP=34;DP4=8,11,6,9;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs11568351,g1000:0.0950479,esp5400:0.157464,ExAC:0.174,clinvar:rs11568351|2,MutationTaster:0.004; 2 190682534 chr2:SNP:1201 C T 221 low_coverage;off_target DP=16;DP4=6,0,10,0;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs72905331,g1000:0.000399361; 2 190682632 chr2:SNP:1202 G C 727 off_target DP=57;DP4=17,3,24,11;AD=20,35;TYPE=SNP;DBXREF=dbSNP:rs3791773,g1000:0.216054; 2 191111045 chr2:SNP:1203 A G 202 low_coverage;off_target DP=17;DP4=0,7,0,10;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs17736581,g1000:0.0585064; 2 191159232 chr2:SNP:1204 A G 454 low_coverage;off_target DP=18;DP4=0,0,17,1;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs188339,g1000:0.684305,esp5400:0.720301,ExAC:0.739; 2 191161622 chr2:SNP:1205 T C 1159 . DP=46;DP4=0,0,21,25;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs1058180,g1000:0.684305,esp5400:0.721923,ExAC:0.739,MutationTaster:1; 2 191161845 chr2:SNP:1206 C T 214 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2582743,g1000:0.671725; 2 191175639 chr2:INDEL:82 GTTTT GTTT 113 low_coverage;off_target DP=14;DP4=1,0,0,12;AD=1,12;TYPE=INDEL;DBXREF=dbSNP:rs36074132,g1000:0.715855; 2 191184475 chr2:SNP:1207 A G 2245 . DP=91;DP4=1,0,41,49;AD=1,90;TYPE=SNP;DBXREF=dbSNP:rs291466,g1000:0.431709,esp5400:0.550009,ExAC:0.519,MutationTaster:1; 2 191184524 chr2:SNP:1208 C T 1223 off_target DP=50;DP4=0,0,24,26;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs3749022,g1000:0.548722,esp5400:0.654505,ExAC:0.664; 2 191745552 chr2:SNP:1209 G C 228 off_target DP=28;DP4=11,5,10,2;AD=16,12;TYPE=SNP;DBXREF=dbSNP:rs555442285,g1000:0.000599042; 2 191745569 chr2:SNP:1210 G A 357 off_target DP=40;DP4=18,4,13,5;AD=22,18;TYPE=SNP;DBXREF=dbSNP:rs115938555,g1000:0.0183706; 2 191745598 chr2:INDEL:83 CGCA C 365 off_target DP=54;DP4=10,3,14,5;AD=13,19;TYPE=INDEL;DBXREF=dbSNP:rs751254452; 2 191745598 chr2:INDEL:84 CGCAGCA C 389 off_target DP=54;DP4=10,3,15,5;AD=13,20;TYPE=INDEL;DBXREF=dbSNP:rs554999438,g1000:0.547923; 2 191746233 chr2:SNP:1211 T G 853 off_target DP=73;DP4=4,27,12,30;AD=31,42;TYPE=SNP;DBXREF=dbSNP:rs78219026,g1000:0.170527,esp5400:0.073073,ExAC:0.116; 2 191765206 chr2:SNP:1212 T C 191 low_coverage;off_target DP=10;DP4=2,0,8,0;AD=2,8;TYPE=SNP;DBXREF=dbSNP:rs3771313,g1000:0.388978; 2 191789206 chr2:SNP:1213 A G 308 off_target DP=30;DP4=9,6,10,5;AD=15,15;TYPE=SNP;DBXREF=dbSNP:rs7564529,g1000:0.173922,esp5400:0.096784; 2 191827528 chr2:SNP:1214 C T 316 off_target DP=32;DP4=11,5,8,8;AD=16,16;TYPE=SNP;DBXREF=dbSNP:rs148933924,g1000:0.00459265,esp5400:0.006135,ExAC:0.005615; 2 191848312 chr2:SNP:1215 T C 878 off_target DP=37;DP4=0,0,19,18;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs12477076,g1000:0.9998; 2 191850566 chr2:SNP:1216 T C 102 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs2280233,g1000:0.297923; 2 191851997 chr2:SNP:1217 T C 117 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs17817076,g1000:0.376797; 2 198359267 chr2:INDEL:85 A ACT 481 low_coverage;off_target DP=18;DP4=0,0,18,0;AD=0,18;TYPE=INDEL;DBXREF=dbSNP:rs34314224,g1000:0.696286; 2 198362018 chr2:SNP:1218 T C 10000 . DP=138;DP4=0,1,65,71;AD=1,136;TYPE=SNP;DBXREF=dbSNP:rs8539,g1000:0.654553,esp5400:0.699201,ExAC:0.649,clinvar:rs8539|255; 2 198363501 chr2:SNP:1219 C T 149 . DP=28;DP4=8,12,4,4;AD=20,8;TYPE=SNP;DBXREF=dbSNP:rs78187001,esp5400:0.075572; 2 200173684 chr2:SNP:1220 T G 1150 . DP=47;DP4=0,0,13,34;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs10153730,g1000:0.930911,esp5400:0.931573,ExAC:0.981; 2 200245245 chr2:SNP:1221 C G 117 low_coverage;off_target DP=12;DP4=0,6,1,5;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs1348813,g1000:0.497404,esp5400:0.627347,ExAC:0.665; 2 200246318 chr2:SNP:1222 C T 143 low_coverage;off_target DP=7;DP4=1,0,6,0;AD=1,6;TYPE=SNP;DBXREF=dbSNP:rs2305262,g1000:0.404752; 2 200298313 chr2:SNP:1223 A G 312 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs7596597,g1000:0.931909; 2 202006096 chr2:SNP:1224 G A 677 . DP=56;DP4=17,6,17,16;AD=23,33;TYPE=SNP;DBXREF=dbSNP:rs10190751,g1000:0.216454,esp5400:0.249034,ExAC:0.116; 2 202006425 chr2:INDEL:86 AGT A 268 low_coverage;off_target DP=14;DP4=0,3,0,11;AD=3,11;TYPE=INDEL;DBXREF=dbSNP:rs55941675,g1000:0.858826; 2 202013826 chr2:SNP:1225 A T 204 off_target DP=28;DP4=3,14,5,6;AD=17,11;TYPE=SNP;DBXREF=dbSNP:rs17860389,g1000:0.0233626,esp5400:0.024075,ExAC:0.033; 2 202025131 chr2:SNP:1226 G A 269 low_coverage;off_target DP=11;DP4=0,0,8,3;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2518142,g1000:0.83766,esp5400:0.883414,ExAC:0.868; 2 202028491 chr2:SNP:1227 G A 198 low_coverage;off_target DP=16;DP4=4,1,10,0;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs72931066,g1000:0.0229633; 2 202050677 chr2:SNP:1228 A G 1219 . DP=103;DP4=24,19,28,32;AD=43,60;TYPE=SNP;DBXREF=dbSNP:rs3900115,g1000:0.394169,esp5400:0.505949,ExAC:0.452; 2 202068433 chr2:SNP:1229 C T 857 off_target DP=85;DP4=22,18,29,16;AD=40,45;TYPE=SNP;DBXREF=dbSNP:rs17860401,g1000:0.0327476,esp5400:0.031883,ExAC:0.035; 2 202082261 chr2:SNP:1230 G A 250 off_target DP=40;DP4=18,8,9,5;AD=26,14;TYPE=SNP;DBXREF=dbSNP:rs142968374,g1000:0.0081869,esp5400:0.002696,ExAC:0.007644; 2 202122995 chr2:SNP:1231 A G 655 . DP=26;DP4=0,0,12,14;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs3769823,g1000:0.646366,esp5400:0.671039,ExAC:0.667,MutationTaster:0; 2 202149589 chr2:SNP:1232 G C 277 . DP=29;DP4=9,5,10,5;AD=14,15;TYPE=SNP;DBXREF=dbSNP:rs1045485,g1000:0.0527157,esp5400:0.110801,ExAC:0.091,clinvar:rs1045485|255,MutationTaster:0; 2 202151140 chr2:SNP:1233 T G 119 low_coverage;off_target DP=17;DP4=10,1,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs34841024,g1000:0.0513179,esp5400:0.108756,ExAC:0.09; 2 202151163 chr2:SNP:1234 A G 830 off_target DP=32;DP4=0,0,29,3;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs3769818,g1000:0.745208,esp5400:0.742517,ExAC:0.715; 2 202151439 chr2:SNP:1235 G C 141 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs3185378,g1000:0.554313; 2 202245244 chr2:SNP:1236 A G 277 off_target DP=28;DP4=12,2,14,0;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs3795966,g1000:0.550919,esp5400:0.573991,ExAC:0.624; 2 202248979 chr2:SNP:1237 T A 317 off_target DP=40;DP4=11,11,6,12;AD=22,18;TYPE=SNP;DBXREF=dbSNP:rs7579853,g1000:0.551318,esp5400:0.574656,ExAC:0.627; 2 202249060 chr2:SNP:1238 C T 203 low_coverage;off_target DP=19;DP4=0,9,0,10;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs2540328,g1000:0.239018; 2 202252539 chr2:SNP:1239 G A 465 . DP=52;DP4=14,13,14,11;AD=27,25;TYPE=SNP;DBXREF=dbSNP:rs2244438,g1000:0.239018,esp5400:0.281744,ExAC:0.284,MutationTaster:0.589; 2 202254288 chr2:INDEL:87 A AC 167 low_coverage;off_target DP=16;DP4=3,4,2,7;AD=7,9;TYPE=INDEL;DBXREF=dbSNP:rs3214366,g1000:0.540935; 2 202260049 chr2:SNP:1240 G A 1348 . DP=52;DP4=0,0,39,13;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs2256584,g1000:0.974641,esp5400:0.973694,ExAC:0.992; 2 202264156 chr2:SNP:1241 C T 687 . DP=60;DP4=16,11,18,15;AD=27,33;TYPE=SNP;DBXREF=dbSNP:rs13022344,g1000:0.539337,esp5400:0.566369,ExAC:0.622,MutationTaster:1; 2 202264316 chr2:SNP:1242 C T 161 off_target DP=23;DP4=0,14,0,9;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs6732993,g1000:0.539337; 2 202271991 chr2:SNP:1243 T C 161 low_coverage;off_target DP=14;DP4=6,0,8,0;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs11691859,g1000:0.539337; 2 202272032 chr2:SNP:1244 T A 288 off_target DP=28;DP4=12,2,14,0;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs11691865,g1000:0.539337; 2 202285100 chr2:SNP:1245 A G 260 off_target DP=35;DP4=17,4,10,4;AD=21,14;TYPE=SNP;DBXREF=dbSNP:rs4507084,g1000:0.725839,esp5400:0.68126,ExAC:0.706; 2 202489109 chr2:SNP:1246 T C 208 off_target DP=30;DP4=4,15,2,9;AD=19,11;TYPE=SNP;DBXREF=dbSNP:rs17384203,g1000:0.0401358,esp5400:0.07797; 2 202491995 chr2:SNP:1247 G A 252 off_target DP=26;DP4=7,5,7,7;AD=12,14;TYPE=SNP;DBXREF=dbSNP:rs2540450,g1000:0.361821,esp5400:0.2523,ExAC:0.287,clinvar:rs2540450|2; 2 202501448 chr2:SNP:1248 T C 137 off_target DP=24;DP4=9,7,4,4;AD=16,8;TYPE=SNP;DBXREF=dbSNP:rs1208081,g1000:0.585064,esp5400:0.67091,ExAC:0.557,clinvar:rs1208081|2; 2 202505545 chr2:SNP:1249 G A 289 off_target DP=38;DP4=13,9,9,7;AD=22,16;TYPE=SNP;DBXREF=dbSNP:rs56321285,g1000:0.185903,esp5400:0.289734; 2 202505740 chr2:SNP:1250 T A 756 off_target DP=30;DP4=0,0,3,27;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2540424,g1000:0.810503; 2 202507982 chr2:SNP:1251 T C 105 low_coverage;off_target DP=9;DP4=2,2,4,1;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs6723016,g1000:0.520966; 2 202509814 chr2:SNP:1252 T C 158 low_coverage;off_target DP=15;DP4=7,0,8,0;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs3754932,g1000:0.504193; 2 202523347 chr2:SNP:1253 C T 933 off_target DP=37;DP4=0,0,17,20;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2597900,g1000:0.480631; 2 202528830 chr2:INDEL:88 ATTTTT ATTTTTT 335 . DP=39;DP4=0,3,19,17;AD=3,36;TYPE=INDEL;DBXREF=dbSNP:rs74887695,g1000:0.320887,ExAC:0.372; 2 202531136 chr2:SNP:1254 G C 310 off_target DP=34;DP4=5,13,2,14;AD=18,16;TYPE=SNP;DBXREF=dbSNP:rs17384314,g1000:0.278754,esp5400:0.312779,ExAC:0.281; 2 202534279 chr2:INDEL:89 C CAAGGTATT 114 low_variant_fraction;off_target DP=20;DP4=11,3,5,1;AD=14,6;TYPE=INDEL;DBXREF=dbSNP:rs10670031,g1000:0.972444; 2 202534280 chr2:INDEL:90 AATGACTATCACACTACT A 298 off_target DP=20;DP4=6,1,10,3;AD=7,13;TYPE=INDEL;DBXREF=dbSNP:rs376804817; 2 202534303 chr2:INDEL:91 TATAGGAAGAGCTTAA T 303 low_coverage;off_target DP=19;DP4=5,1,10,3;AD=6,13;TYPE=INDEL;DBXREF=dbSNP:rs145833090,g1000:0.812101; 2 202539839 chr2:INDEL:92 CA CAA 394 off_target DP=32;DP4=8,4,9,10;AD=12,19;TYPE=INDEL;DBXREF=dbSNP:rs553744660,ExAC:0.0006564; 2 202545243 chr2:SNP:1255 T C 465 low_coverage;off_target DP=19;DP4=0,0,19,0;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs4675219,g1000:0.302316; 2 202546113 chr2:SNP:1256 T C 2441 off_target DP=97;DP4=0,0,41,56;AD=0,97;TYPE=SNP;DBXREF=dbSNP:rs1208073,g1000:0.976238; 2 202549626 chr2:SNP:1257 A G 160 low_coverage;off_target DP=6;DP4=0,0,6,0;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs1812933,g1000:0.595447; 2 202549666 chr2:SNP:1258 A C 312 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1812932,g1000:0.266773; 2 202557702 chr2:SNP:1259 C T 1938 . DP=77;DP4=0,0,35,42;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs6725443,g1000:0.97504,esp5400:0.970739,ExAC:0.992,MutationTaster:0; 2 202566741 chr2:SNP:1260 T C 561 off_target DP=21;DP4=0,0,0,21;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs7603563,g1000:0.905551; 2 202569992 chr2:SNP:1261 A T 830 off_target DP=32;DP4=0,0,9,23;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs3219171,g1000:0.90595,esp5400:0.897032; 2 202570232 chr2:SNP:1262 A G 882 off_target DP=35;DP4=0,0,18,17;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs3219170,g1000:0.90595,esp5400:0.890482,ExAC:0.922,clinvar:rs3219170|2; 2 202575821 chr2:SNP:1263 G A 1076 . DP=44;DP4=0,0,20,24;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs3219168,g1000:0.905351,esp5400:0.889609,ExAC:0.923,clinvar:rs3219168|2; 2 202575907 chr2:SNP:1264 A G 734 off_target DP=30;DP4=0,0,4,26;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2882231,g1000:0.50619; 2 202580370 chr2:SNP:1265 G A 245 low_coverage;off_target DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3219167,g1000:0.804113,esp5400:0.82415,ExAC:0.83,clinvar:rs3219167|2; 2 202598113 chr2:SNP:1266 C T 1819 . DP=74;DP4=0,1,35,38;AD=1,73;TYPE=SNP;DBXREF=dbSNP:rs2276615,g1000:0.372404,esp5400:0.466238,ExAC:0.527,clinvar:rs2276615|2; 2 202606639 chr2:SNP:1267 G A 907 off_target DP=36;DP4=0,0,2,34;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs3731703,g1000:0.434105; 2 202625615 chr2:SNP:1268 C T 706 . DP=28;DP4=0,0,25,3;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs3219156,g1000:0.896565,esp5400:0.858711,ExAC:0.91,clinvar:rs3219156|2,MutationTaster:0; 2 203079307 chr2:SNP:1269 T C 252 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3769817,g1000:0.852436; 2 204732714 chr2:SNP:1270 A G 472 . DP=54;DP4=15,15,10,14;AD=30,24;TYPE=SNP;DBXREF=dbSNP:rs231775,g1000:0.427316,esp5400:0.370515,ExAC:0.411,clinvar:rs231775|255|255|255|255|255,MutationTaster:0; 2 204732850 chr2:SNP:1271 A G 410 off_target DP=20;DP4=0,0,5,14;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs231776,g1000:0.990615; 2 204824283 chr2:SNP:1272 T G 1134 off_target DP=45;DP4=0,0,27,18;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs10172036,g1000:0.515375,esp5400:0.594906,ExAC:0.573; 2 205829991 chr2:SNP:1273 C T 1975 . DP=185;DP4=38,47,48,52;AD=85,100;TYPE=SNP;DBXREF=dbSNP:rs236843,g1000:0.803714,esp5400:0.671286,ExAC:0.661; 2 205912210 chr2:SNP:1274 C A 182 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs7563474,g1000:0.621206; 2 205912403 chr2:SNP:1275 T C 857 . DP=93;DP4=24,22,22,24;AD=46,46;TYPE=SNP;DBXREF=dbSNP:rs1510765,g1000:0.544728,esp5400:0.61018,ExAC:0.442,MutationTaster:0.593; 2 205969023 chr2:SNP:1276 A C 196 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2289024,g1000:0.539936; 2 206036918 chr2:SNP:1277 C T 630 off_target DP=25;DP4=0,0,15,10;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs736320,g1000:0.710663,esp5400:0.781044,ExAC:0.723; 2 206364791 chr2:SNP:1278 C G 830 off_target DP=32;DP4=0,0,4,28;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs11683289,g1000:0.388179,esp5400:0.479699,ExAC:0.478; 2 206418032 chr2:SNP:1279 G A 1374 off_target DP=53;DP4=0,0,27,26;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs6730102,g1000:0.942492,esp5400:0.937525,ExAC:0.982; 2 206562250 chr2:SNP:1280 C T 1587 off_target DP=63;DP4=0,0,35,28;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs849558,g1000:0.891374,esp5400:0.917643,ExAC:0.952; 2 206581033 chr2:SNP:1281 G A 839 . DP=37;DP4=1,0,13,23;AD=1,36;TYPE=SNP;DBXREF=dbSNP:rs849541,g1000:0.964257,esp5400:0.962168,ExAC:0.989,MutationTaster:0.003; 2 206590686 chr2:SNP:1282 T C 770 . DP=92;DP4=24,27,22,19;AD=51,41;TYPE=SNP;DBXREF=dbSNP:rs2228639,g1000:0.0397364,esp5400:0.078639,ExAC:0.068; 2 206592695 chr2:SNP:1283 T C 544 . DP=57;DP4=14,15,16,12;AD=29,28;TYPE=SNP;DBXREF=dbSNP:rs849526,g1000:0.517572,esp5400:0.407418,ExAC:0.569; 2 206608039 chr2:SNP:1284 T C 1637 . DP=65;DP4=0,0,50,15;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs849568,g1000:0.964657,esp5400:0.955382,ExAC:0.98; 2 206989036 chr2:SNP:1285 C T 616 off_target DP=52;DP4=5,16,16,15;AD=21,31;TYPE=SNP;DBXREF=dbSNP:rs72942891,g1000:0.000399361,esp5400:0.00093,ExAC:0.0006177; 2 206991416 chr2:SNP:1286 T A 682 off_target DP=62;DP4=13,14,14,20;AD=27,34;TYPE=SNP;DBXREF=dbSNP:rs55793630,g1000:0.00279553,esp5400:0.007343,ExAC:0.005403,clinvar:rs55793630|2; 2 206992371 chr2:SNP:1287 G A 229 low_coverage;off_target DP=19;DP4=8,0,11,0;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs4147726,g1000:0.460064; 2 206995010 chr2:SNP:1288 A G 844 off_target DP=79;DP4=11,23,18,27;AD=34,45;TYPE=SNP;DBXREF=dbSNP:rs4147725,g1000:0.307907,esp5400:0.358803,ExAC:0.304; 2 206995139 chr2:SNP:1289 C A 217 off_target DP=20;DP4=0,9,0,11;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs3770987,g1000:0.460863; 2 207006676 chr2:SNP:1290 T C 455 . DP=61;DP4=18,19,12,12;AD=37,24;TYPE=SNP;DBXREF=dbSNP:rs1801318,g1000:0.309904,esp5400:0.364845,ExAC:0.31,clinvar:rs1801318|255; 2 207006825 chr2:SNP:1291 C A 360 off_target DP=27;DP4=3,7,7,10;AD=10,17;TYPE=SNP;DBXREF=dbSNP:rs4147718,g1000:0.380591,esp5400:0.43509,ExAC:0.391; 2 207008675 chr2:INDEL:93 C CT 138 low_coverage;off_target DP=18;DP4=7,0,8,0;AD=7,8;TYPE=INDEL;DBXREF=dbSNP:rs35409448,g1000:0.492812; 2 207008763 chr2:SNP:1292 C A 293 . DP=36;DP4=14,6,9,7;AD=20,16;TYPE=SNP;DBXREF=dbSNP:rs1127566,g1000:0.46226,esp5400:0.513571,ExAC:0.454,clinvar:rs1127566|255; 2 207012392 chr2:SNP:1293 T C 795 . DP=98;DP4=31,23,30,14;AD=54,44;TYPE=SNP;DBXREF=dbSNP:rs192949406,g1000:0.000998403,esp5400:0.002417,ExAC:0.001944,clinvar:rs192949406|2; 2 207024886 chr2:INDEL:94 GCCC GCCCC 445 off_target DP=48;DP4=1,3,1,42;AD=4,43;TYPE=INDEL;DBXREF=dbSNP:rs113729178,g1000:0.9998; 2 207025444 chr2:SNP:1294 T C 741 . DP=67;DP4=11,18,16,22;AD=29,38;TYPE=SNP;DBXREF=dbSNP:rs11689362,g1000:0.460264,esp5400:0.514687,ExAC:0.455; 2 207027407 chr2:INDEL:95 C CT 586 off_target DP=89;DP4=27,21,20,19;AD=48,39;TYPE=INDEL;DBXREF=dbSNP:rs35430253,g1000:0.491014,ExAC:0.464; 2 207041053 chr2:SNP:1295 T C 987 . DP=142;DP4=45,42,26,29;AD=87,55;TYPE=SNP;DBXREF=dbSNP:rs3732083,g1000:0.46246,esp5400:0.514873,ExAC:0.458,MutationTaster:0.985; 2 207041441 chr2:SNP:1296 G A 1201 . DP=125;DP4=29,32,20,44;AD=61,64;TYPE=SNP;DBXREF=dbSNP:rs3732082,g1000:0.345248,esp5400:0.382506,ExAC:0.35; 2 207946164 chr2:SNP:1297 T C 101 low_coverage;off_target DP=15;DP4=0,9,0,6;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs2287506,g1000:0.441693; 2 207953406 chr2:SNP:1298 T G 202 off_target DP=22;DP4=0,12,0,10;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs2302870,g1000:0.0632987; 2 207988613 chr2:SNP:1299 C T 3172 . DP=128;DP4=0,0,54,73;AD=0,127;TYPE=SNP;DBXREF=dbSNP:rs2700166,g1000:0.957468,esp5400:0.957148,ExAC:0.988; 2 207989230 chr2:SNP:1300 G T 175 low_coverage;off_target DP=12;DP4=0,4,1,7;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs763865,g1000:0.644169; 2 207998800 chr2:SNP:1301 C T 674 . DP=50;DP4=15,3,22,10;AD=18,32;TYPE=SNP;DBXREF=dbSNP:rs2284934,g1000:0.648962,ExAC:0.613; 2 208986637 chr2:SNP:1302 T C 1076 . DP=44;DP4=0,0,10,34;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2305430,g1000:0.776757,esp5400:0.894218,ExAC:0.85,clinvar:rs2305430|2; 2 208989037 chr2:SNP:1303 A G 1226 . DP=124;DP4=26,35,26,37;AD=61,63;TYPE=SNP;DBXREF=dbSNP:rs2242074,g1000:0.644768,esp5400:0.577163,ExAC:0.574,clinvar:rs2242074|2; 2 209007559 chr2:SNP:1304 T G 2321 . DP=94;DP4=1,0,52,41;AD=1,93;TYPE=SNP;DBXREF=dbSNP:rs796287,g1000:0.644569,esp5400:0.715839,ExAC:0.688,MutationTaster:0; 2 209010558 chr2:SNP:1305 A G 230 . DP=21;DP4=8,2,11,0;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs2854723,g1000:0.401957,esp5400:0.498234,ExAC:0.48; 2 209101905 chr2:INDEL:96 GAAAAAAAAAA GAAAAAAAAA 190 homopolymer_region;off_target DP=47;DP4=1,1,24,20;AD=2,44;TYPE=INDEL;DBXREF=dbSNP:rs57383668,g1000:0.982628,ExAC:0.976; 2 209163556 chr2:SNP:1306 C T 555 off_target DP=22;DP4=0,0,4,18;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs7569723,g1000:0.911542; 2 209165487 chr2:SNP:1307 A T 416 low_coverage;off_target DP=17;DP4=0,0,16,1;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6755550,g1000:0.991813; 2 209166830 chr2:SNP:1308 T G 142 low_coverage;off_target DP=12;DP4=5,0,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs10497897,g1000:0.0996406; 2 209168853 chr2:SNP:1309 C T 1813 off_target DP=72;DP4=0,0,47,25;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs893256,g1000:0.910743,esp5400:0.918944,ExAC:0.959; 2 209182480 chr2:SNP:1310 A G 294 low_coverage;off_target DP=17;DP4=4,0,11,2;AD=4,13;TYPE=SNP;DBXREF=dbSNP:rs10174541,g1000:0.116014; 2 209182548 chr2:SNP:1311 A G 313 off_target DP=33;DP4=12,4,10,7;AD=16,17;TYPE=SNP;DBXREF=dbSNP:rs10497898,g1000:0.0998403,esp5400:0.139643,ExAC:0.12; 2 209182677 chr2:INDEL:97 CAGTTCAGCAGTGA C 181 off_target DP=38;DP4=9,18,3,7;AD=27,10;TYPE=INDEL;DBXREF=dbSNP:rs112715599,g1000:0.115216,ExAC:0.124; 2 209184740 chr2:SNP:1312 A G 105 low_coverage;off_target DP=9;DP4=4,0,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs73056463,g1000:0.117412; 2 209184844 chr2:SNP:1313 A G 337 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs934712,g1000:0.912141; 2 209184980 chr2:SNP:1314 G A 1504 . DP=58;DP4=0,0,34,24;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs10932258,g1000:0.991813,esp5400:0.992092,ExAC:0.998,MutationTaster:1; 2 209184999 chr2:SNP:1315 C T 1788 . DP=71;DP4=0,0,33,38;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs10932259,g1000:0.911542,esp5400:0.91943,ExAC:0.96; 2 209189442 chr2:SNP:1316 T C 170 off_target DP=22;DP4=13,0,9,0;AD=13,9;TYPE=SNP;DBXREF=dbSNP:rs7355562,g1000:0.796326; 2 209189912 chr2:SNP:1317 A G 467 low_coverage;off_target DP=18;DP4=0,0,3,15;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs893255,g1000:0.911342; 2 209190330 chr2:SNP:1318 T C 1587 . DP=63;DP4=0,0,31,32;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs2363468,g1000:0.911741,esp5400:0.919967,ExAC:0.96,MutationTaster:1; 2 209190519 chr2:SNP:1319 A T 1662 . DP=66;DP4=0,0,48,18;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs893254,g1000:0.911542,esp5400:0.919874,ExAC:0.96,MutationTaster:1; 2 209190528 chr2:SNP:1320 C G 1943 . DP=75;DP4=0,0,55,20;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs893253,g1000:0.912141,esp5400:0.920896,ExAC:0.96,MutationTaster:0; 2 209190632 chr2:SNP:1321 T G 1702 . DP=212;DP4=73,44,57,38;AD=117,95;TYPE=SNP;DBXREF=dbSNP:rs999890,g1000:0.0990415,esp5400:0.139617,ExAC:0.12,MutationTaster:1; 2 209190649 chr2:SNP:1322 A G 1675 . DP=222;DP4=82,48,55,37;AD=130,92;TYPE=SNP;DBXREF=dbSNP:rs999891,g1000:0.0990415,esp5400:0.139152,ExAC:0.12; 2 209194696 chr2:SNP:1323 G C 934 off_target DP=36;DP4=0,0,1,35;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs1437414,g1000:0.912141,esp5400:0.944203; 2 209195491 chr2:INDEL:98 G GAGA 373 off_target DP=23;DP4=0,3,1,15;AD=3,16;TYPE=INDEL;DBXREF=dbSNP:rs112938452,g1000:0.911342; 2 209198000 chr2:SNP:1324 C T 445 off_target DP=34;DP4=5,6,16,7;AD=11,23;TYPE=SNP;DBXREF=dbSNP:rs11885913,g1000:0.0708866,esp5400:0.101599,ExAC:0.095; 2 209199945 chr2:SNP:1325 A G 664 off_target DP=28;DP4=0,0,24,4;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs2363469,g1000:0.911542; 2 209200394 chr2:SNP:1326 A C 227 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs6718402,g1000:0.911741; 2 209201054 chr2:SNP:1327 T C 1076 off_target DP=44;DP4=0,0,1,43;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs6744236,g1000:0.982029; 2 209201739 chr2:SNP:1328 T C 237 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs7596571,g1000:0.983027; 2 209203122 chr2:SNP:1329 C G 147 low_coverage;off_target DP=6;DP4=0,0,5,1;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs4675756,g1000:0.991613; 2 209209827 chr2:SNP:1330 G A 1891 . DP=73;DP4=0,0,34,39;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs2304544,g1000:0.910942,esp5400:0.918758,ExAC:0.959; 2 209209997 chr2:SNP:1331 C T 949 off_target DP=40;DP4=0,0,20,20;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2043718,g1000:0.991813; 2 209212707 chr2:SNP:1332 G A 332 . DP=27;DP4=3,7,6,10;AD=10,16;TYPE=SNP;DBXREF=dbSNP:rs2304545,g1000:0.716054,esp5400:0.678286,ExAC:0.81; 2 209214770 chr2:SNP:1333 A G 958 . DP=38;DP4=0,0,15,23;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs2118297,g1000:0.911142,esp5400:0.919208,ExAC:0.96; 2 209215448 chr2:SNP:1334 A G 1159 off_target DP=46;DP4=0,0,33,13;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs994696,g1000:0.911142,esp5400:0.919844,ExAC:0.96; 2 209215586 chr2:SNP:1335 A G 807 . DP=33;DP4=0,0,6,27;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs994697,g1000:0.911142,esp5400:0.919223,ExAC:0.96; 2 209219190 chr2:SNP:1336 A G 234 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs6435453,g1000:0.911741; 2 209219695 chr2:SNP:1337 A T 102 low_coverage;off_target DP=10;DP4=5,0,3,2;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs17700235,g1000:0.0712859; 2 210517785 chr2:SNP:1338 C T 555 off_target DP=22;DP4=0,0,22,0;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2254169,g1000:0.999401; 2 210594540 chr2:SNP:1339 A G 930 off_target DP=38;DP4=0,0,24,14;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs4673486,g1000:0.740016,esp5400:0.748373,ExAC:0.843; 2 210594717 chr2:INDEL:99 CTTTTT CTTTTTT 222 off_target DP=33;DP4=4,1,9,18;AD=5,27;TYPE=INDEL;DBXREF=dbSNP:rs11389149,g1000:0.743011,ExAC:0.844; 2 210594768 chr2:SNP:1340 T C 856 off_target DP=35;DP4=0,0,18,17;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs7594601,g1000:0.808506; 2 210678691 chr2:SNP:1341 T G 467 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2159745,g1000:0.985224; 2 210745681 chr2:SNP:1342 C A 1913 . DP=76;DP4=0,0,48,28;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs2370838,g1000:0.980631,esp5400:0.98021,ExAC:0.976; 2 210786137 chr2:SNP:1343 G A 731 off_target DP=29;DP4=0,0,25,4;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs9288415,g1000:0.998802; 2 210838004 chr2:INDEL:100 TTC T 109 low_variant_fraction DP=47;DP4=8,31,2,5;AD=39,7;TYPE=INDEL;DBXREF=dbSNP:rs141804658,ExAC:0.063; 2 210843383 chr2:SNP:1344 G A 813 . DP=119;DP4=42,33,21,23;AD=75,44;TYPE=SNP;DBXREF=dbSNP:rs2075117,g1000:0.645767,esp5400:0.629252,ExAC:0.628; 2 211060050 chr2:SNP:1345 T G 781 . DP=31;DP4=0,0,11,20;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2286963,g1000:0.211062,esp5400:0.273894,ExAC:0.301,clinvar:rs2286963|0,MutationTaster:1; 2 211069438 chr2:SNP:1346 G A 907 off_target DP=36;DP4=0,0,16,20;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs263677,g1000:0.975639,esp5400:0.979914,ExAC:0.994; 2 211074909 chr2:SNP:1347 T C 467 low_coverage DP=18;DP4=0,0,9,9;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs3764913,g1000:0.211661,esp5400:0.274493,ExAC:0.302; 2 211421452 chr2:INDEL:101 A ATCT 185 . DP=35;DP4=14,10,8,2;AD=24,10;TYPE=INDEL;DBXREF=dbSNP:rs3835047,g1000:0.477037,ExAC:0.435,clinvar:rs61509952|; 2 211456637 chr2:SNP:1348 A G 3076 . DP=126;DP4=0,0,84,42;AD=0,126;TYPE=SNP;DBXREF=dbSNP:rs1047883,esp5400:0.596951,ExAC:0.568,clinvar:rs1047883|255,MutationTaster:1; 2 211456639 chr2:SNP:1349 C T 3218 . DP=128;DP4=0,0,87,41;AD=0,128;TYPE=SNP;DBXREF=dbSNP:rs2229589,g1000:0.591254,esp5400:0.602714,ExAC:0.572,clinvar:rs2229589|255; 2 211465113 chr2:SNP:1350 G A 197 low_coverage;off_target DP=10;DP4=2,0,8,0;AD=2,8;TYPE=SNP;DBXREF=dbSNP:rs9288418,g1000:0.230831; 2 211473070 chr2:SNP:1351 G T 236 off_target DP=21;DP4=4,4,9,4;AD=8,13;TYPE=SNP;DBXREF=dbSNP:rs2287600,g1000:0.136581,esp5400:0.08276,ExAC:0.124,clinvar:rs2287600|2; 2 211481257 chr2:SNP:1352 C G 1272 . DP=52;DP4=0,0,14,38;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs2287599,g1000:0.649161,esp5400:0.666481,ExAC:0.586,clinvar:rs2287599|255; 2 211513118 chr2:SNP:1353 C T 171 low_coverage;off_target DP=7;DP4=0,0,5,2;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs4673540,g1000:1; 2 211514995 chr2:SNP:1354 G T 275 low_coverage;off_target DP=12;DP4=1,0,11,0;AD=1,11;TYPE=SNP;DBXREF=dbSNP:rs34449727,g1000:0.223842; 2 211523457 chr2:SNP:1355 C T 1117 off_target DP=46;DP4=0,1,2,43;AD=1,45;TYPE=SNP;DBXREF=dbSNP:rs6435580,g1000:0.175319,esp5400:0.252091,ExAC:0.28,clinvar:rs6435580|2; 2 211533070 chr2:SNP:1356 A G 208 low_coverage;off_target DP=8;DP4=0,0,1,7;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs10932347,g1000:0.951278; 2 211539650 chr2:SNP:1357 G A 792 . DP=84;DP4=25,18,20,21;AD=43,41;TYPE=SNP;DBXREF=dbSNP:rs140578009,g1000:0.00858626,esp5400:0.013014,ExAC:0.012,clinvar:rs140578009|2,MutationTaster:0.992; 2 211540507 chr2:SNP:1358 C A 783 . DP=87;DP4=22,24,21,20;AD=46,41;TYPE=SNP;DBXREF=dbSNP:rs1047891,g1000:0.288538,esp5400:0.329336,ExAC:0.303,clinvar:rs1047891|255,MutationTaster:0.361; 2 211542525 chr2:SNP:1359 A G 301 off_target DP=24;DP4=8,2,14,0;AD=10,14;TYPE=SNP;DBXREF=dbSNP:rs17832175,g1000:0.0535144; 2 212252809 chr2:SNP:1360 G A 1038 off_target DP=40;DP4=0,0,5,35;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs934607,g1000:0.68111; 2 212286934 chr2:SNP:1361 A T 1474 off_target DP=62;DP4=0,1,8,53;AD=1,61;TYPE=SNP;DBXREF=dbSNP:rs3791709,g1000:0.301318; 2 212287069 chr2:SNP:1362 T C 752 off_target DP=29;DP4=0,0,0,29;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs10211047,g1000:0.997204; 2 212295491 chr2:INDEL:102 TG T 355 low_coverage;off_target DP=16;DP4=1,0,15,0;AD=1,15;TYPE=INDEL;DBXREF=dbSNP:rs66513032,g1000:0.270767; 2 212295498 chr2:INDEL:103 T TC 324 low_coverage;off_target DP=17;DP4=0,0,15,0;AD=0,15;TYPE=INDEL;DBXREF=dbSNP:rs149101807; 2 212295875 chr2:SNP:1363 C T 465 low_coverage;off_target DP=19;DP4=0,0,8,11;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs6710946,g1000:0.79353,esp5400:0.784957,ExAC:0.733; 2 212296094 chr2:SNP:1364 G C 260 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6435622,g1000:0.304113; 2 212543924 chr2:SNP:1365 A G 954 off_target DP=39;DP4=0,0,18,21;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs4673628,g1000:0.344249,esp5400:0.477412,ExAC:0.395; 2 212544024 chr2:SNP:1366 G A 415 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs10169970,g1000:0.358826; 2 212569879 chr2:SNP:1367 T C 318 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs10221746,g1000:0.204673; 2 212569924 chr2:SNP:1368 G A 294 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs10221615,g1000:0.15655; 2 212569983 chr2:SNP:1369 G A 783 off_target DP=33;DP4=0,0,17,16;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs6723705,g1000:0.397764,esp5400:0.573902; 2 212812060 chr2:SNP:1370 T C 146 low_coverage;off_target DP=11;DP4=4,0,7,0;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs839540,g1000:0.345647; 2 212812097 chr2:SNP:1371 T C 230 low_coverage;off_target DP=14;DP4=4,0,10,0;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs839541,g1000:0.355032; 2 214161773 chr2:SNP:1372 C T 132 low_coverage;off_target DP=9;DP4=3,0,6,0;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs975956,g1000:0.219449,ExAC:0.136; 2 214161849 chr2:SNP:1373 C T 190 low_coverage;off_target DP=15;DP4=5,1,9,0;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs1488988,g1000:0.110423,ExAC:0.149; 2 214174659 chr2:SNP:1374 A G 156 low_coverage;off_target DP=18;DP4=10,0,8,0;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs72935193,g1000:0.120607; 2 214174767 chr2:SNP:1375 C T 296 off_target DP=46;DP4=17,13,9,7;AD=30,16;TYPE=SNP;DBXREF=dbSNP:rs10498003,g1000:0.108227,esp5400:0.223917,ExAC:0.206; 2 214182100 chr2:SNP:1376 A T 619 . DP=66;DP4=11,23,8,24;AD=34,32;TYPE=SNP;DBXREF=dbSNP:rs10183630,g1000:0.120008,esp5400:0.239151,ExAC:0.223; 2 214228792 chr2:SNP:1377 C T 454 low_coverage DP=18;DP4=0,0,12,6;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs12469417,g1000:0.976038,esp5400:0.972669,ExAC:0.991; 2 214228959 chr2:SNP:1378 G A 328 low_coverage;off_target DP=13;DP4=0,0,2,11;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4146048,g1000:0.976038; 2 214794743 chr2:SNP:1379 A C 548 . DP=41;DP4=8,7,7,19;AD=15,26;TYPE=SNP;DBXREF=dbSNP:rs12623569,g1000:0.276757,esp5400:0.267057,ExAC:0.264,MutationTaster:1; 2 214973011 chr2:SNP:1380 G A 659 off_target DP=61;DP4=13,15,16,17;AD=28,33;TYPE=SNP;DBXREF=dbSNP:rs16851495,g1000:0.128594,esp5400:0.081614,ExAC:0.088; 2 214973184 chr2:SNP:1381 C A 133 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs201166071; 2 215013787 chr2:SNP:1382 A G 272 off_target DP=30;DP4=14,1,13,1;AD=15,14;TYPE=SNP;DBXREF=dbSNP:rs2372225,g1000:0.403754; 2 215013801 chr2:SNP:1383 G A 286 off_target DP=39;DP4=10,1,14,1;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs2372226,g1000:0.403754; 2 215014212 chr2:SNP:1384 A G 285 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6435816,g1000:0.976438; 2 215609645 chr2:SNP:1385 A G 907 off_target DP=36;DP4=0,0,35,1;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs35411590,g1000:0.520767; 2 215610313 chr2:SNP:1386 G T 177 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs6730040,g1000:0.520367; 2 215632256 chr2:SNP:1387 A G 1115 . DP=43;DP4=0,0,22,21;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs2070093,g1000:0.770567,esp5400:0.712068,ExAC:0.813,clinvar:rs2070093|2|2; 2 215645545 chr2:SNP:1388 C G 3085 . DP=130;DP4=0,0,60,68;AD=0,128;TYPE=SNP;DBXREF=dbSNP:rs2070096,g1000:0.190296,esp5400:0.205614,ExAC:0.205,clinvar:rs2070096|2|2; 2 215674436 chr2:SNP:1389 C T 242 low_coverage;off_target DP=11;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs13022992; 2 215797527 chr2:INDEL:104 AATTC A 587 off_target DP=48;DP4=7,12,3,24;AD=19,27;TYPE=INDEL;DBXREF=dbSNP:rs10532785,g1000:0.307708; 2 215807881 chr2:INDEL:105 A AGAT 159 off_target DP=22;DP4=0,13,0,8;AD=13,8;TYPE=INDEL;DBXREF=dbSNP:rs10685449,g1000:0.185503; 2 215812297 chr2:SNP:1390 G A 415 low_coverage;off_target DP=16;DP4=0,0,8,8;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2274412,g1000:0.523363,esp5400:0.52612,ExAC:0.467,clinvar:rs2274412|2; 2 215813900 chr2:SNP:1391 T A 140 off_target DP=26;DP4=6,12,3,5;AD=18,8;TYPE=SNP;DBXREF=dbSNP:rs73088462,g1000:0.163938,esp5400:0.145752,ExAC:0.101; 2 215819853 chr2:SNP:1392 T C 193 low_coverage;off_target DP=16;DP4=5,2,8,1;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs6760738,g1000:0.207268; 2 215820013 chr2:SNP:1393 G A 277 . DP=33;DP4=4,14,6,9;AD=18,15;TYPE=SNP;DBXREF=dbSNP:rs10498027,g1000:0.35004,esp5400:0.381484,ExAC:0.405,clinvar:rs10498027|2; 2 215839570 chr2:SNP:1394 C T 342 . DP=45;DP4=11,15,8,11;AD=26,19;TYPE=SNP;DBXREF=dbSNP:rs16853022,g1000:0.119609,esp5400:0.103737,ExAC:0.048,clinvar:rs16853022|2; 2 215839721 chr2:SNP:1395 G A 152 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs186312029,g1000:0.00219649; 2 215840414 chr2:SNP:1396 C A 347 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs17493319,g1000:0.445088; 2 215846861 chr2:SNP:1397 G A 291 off_target DP=27;DP4=11,2,13,1;AD=13,14;TYPE=SNP;DBXREF=dbSNP:rs60694142,g1000:0.0233626,esp5400:0.022871,ExAC:0.007973; 2 215851246 chr2:SNP:1398 A G 277 low_coverage;off_target DP=11;DP4=0,0,8,3;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs7559069,g1000:0.999002,esp5400:0.998606,ExAC:1,clinvar:rs7559069|2; 2 215851303 chr2:SNP:1399 A G 711 . DP=35;DP4=2,2,17,14;AD=4,31;TYPE=SNP;DBXREF=dbSNP:rs34351934,g1000:0.207069,esp5400:0.201748,ExAC:0.135,clinvar:rs34351934|2; 2 215854156 chr2:SNP:1400 C T 513 . DP=62;DP4=21,12,19,10;AD=33,29;TYPE=SNP;DBXREF=dbSNP:rs71428357,g1000:0.071885,esp5400:0.073898,ExAC:0.065,clinvar:rs71428357|2; 2 215855569 chr2:SNP:1401 T A 1291 . DP=128;DP4=38,22,40,28;AD=60,68;TYPE=SNP;DBXREF=dbSNP:rs141077206,g1000:0.00219649,esp5400:0.00093,ExAC:0.001557,MutationTaster:1; 2 215865849 chr2:SNP:1402 G A 641 off_target DP=27;DP4=0,0,7,20;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs2049361,g1000:0.995008; 2 215869066 chr2:SNP:1403 T C 291 off_target DP=37;DP4=9,12,5,11;AD=21,16;TYPE=SNP;DBXREF=dbSNP:rs34644785,g1000:0.141174,esp5400:0.124302,ExAC:0.106; 2 215874918 chr2:SNP:1404 T C 403 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs4673929,g1000:0.998403; 2 215875251 chr2:SNP:1405 A T 934 off_target DP=36;DP4=0,0,4,32;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs1409607,g1000:0.9998; 2 215876166 chr2:SNP:1406 A T 2124 . DP=82;DP4=0,0,68,14;AD=0,82;TYPE=SNP;DBXREF=dbSNP:rs7560008,g1000:0.998403,esp5400:0.997768,ExAC:0.999,clinvar:rs7560008|2,MutationTaster:0.02; 2 215876371 chr2:SNP:1407 T C 1027 . DP=45;DP4=1,0,11,33;AD=1,44;TYPE=SNP;DBXREF=dbSNP:rs10198064,g1000:0.279353,esp5400:0.269753,ExAC:0.152,clinvar:rs10198064|2; 2 215890253 chr2:SNP:1408 C G 623 off_target DP=24;DP4=0,0,24,0;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2177424,g1000:0.9998; 2 215890312 chr2:SNP:1409 A G 907 off_target DP=36;DP4=0,0,35,1;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs2177423,g1000:0.998403; 2 215890324 chr2:INDEL:106 GTTTTTTTTTT GTTTTTTTTTTT 105 homopolymer_region;off_target DP=46;DP4=12,0,30,2;AD=12,32;TYPE=INDEL;DBXREF=dbSNP:rs5838479,g1000:1; 2 215890352 chr2:INDEL:107 GTTTTTTTTTTT GTTTTTTTTT 286 homopolymer_region;off_target DP=71;DP4=13,2,23,21;AD=15,44;TYPE=INDEL;DBXREF=dbSNP:rs5838480,g1000:1,ExAC:0.991; 2 215890362 chr2:INDEL:108 TTG T 113 low_variant_fraction;off_target DP=73;DP4=29,36,6,2;AD=65,8;TYPE=INDEL; 2 215890371 chr2:SNP:1410 G T 101 off_target DP=29;DP4=11,8,4,4;AD=19,8;TYPE=SNP;DBXREF=dbSNP:rs10167414; 2 215890462 chr2:SNP:1411 A G 502 . DP=52;DP4=5,22,3,22;AD=27,25;TYPE=SNP;DBXREF=dbSNP:rs189141015,g1000:0.00259585,esp5400:9.3e-05,ExAC:0.00145,MutationTaster:1; 2 215910724 chr2:SNP:1412 T G 618 . DP=44;DP4=5,10,11,18;AD=15,29;TYPE=SNP;DBXREF=dbSNP:rs11890512,g1000:0.165136,esp5400:0.162391,ExAC:0.058,MutationTaster:1; 2 215910786 chr2:SNP:1413 T C 151 low_coverage;off_target DP=11;DP4=1,3,2,5;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs10179876,g1000:0.165136,esp5400:0.126767,ExAC:0.056; 2 215910787 chr2:SNP:1414 G A 123 low_coverage;off_target DP=9;DP4=1,2,2,4;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs10167501,g1000:0.165136,esp5400:0.133116,ExAC:0.056; 2 215928972 chr2:SNP:1415 G C 141 low_coverage;off_target DP=14;DP4=1,6,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs1523721,g1000:0.624201,esp5400:0.642339,ExAC:0.576; 2 215976231 chr2:SNP:1416 A T 507 low_coverage;off_target DP=19;DP4=0,0,16,3;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs2948978,g1000:0.965056; 2 216182769 chr2:SNP:1417 A T 460 off_target DP=20;DP4=0,0,12,8;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs4672766,g1000:1; 2 216182770 chr2:SNP:1418 C T 404 low_coverage;off_target DP=17;DP4=0,0,10,7;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs75285060,g1000:0.246006; 2 216184482 chr2:SNP:1419 A G 1209 off_target DP=48;DP4=0,0,11,37;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs16853782,g1000:0.253794,esp5400:0.188732,ExAC:0.234; 2 216189825 chr2:SNP:1420 A G 294 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs3772077,g1000:0.260383; 2 216189845 chr2:SNP:1421 A G 367 low_coverage;off_target DP=15;DP4=0,0,12,3;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs3772078,g1000:0.245407; 2 216190691 chr2:SNP:1422 A C 1614 off_target DP=66;DP4=0,0,32,34;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs2177737,g1000:1,esp5400:0.999814,ExAC:1; 2 216191533 chr2:SNP:1423 C T 2374 off_target DP=99;DP4=0,0,61,37;AD=0,98;TYPE=SNP;DBXREF=dbSNP:rs78562722,g1000:0.245008,esp5400:0.18061,ExAC:0.232; 2 216197971 chr2:SNP:1424 T C 404 low_coverage;off_target DP=17;DP4=0,0,12,5;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs12995526,g1000:0.531749; 2 216199525 chr2:SNP:1425 T C 465 low_coverage;off_target DP=19;DP4=0,0,18,1;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs12466139,g1000:0.255591; 2 216199551 chr2:SNP:1426 T A 661 off_target DP=27;DP4=0,0,20,7;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs10932608,g1000:0.293331; 2 216200907 chr2:SNP:1427 C G 1058 off_target DP=42;DP4=0,0,6,36;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs13002576,g1000:0.521366; 2 216203296 chr2:SNP:1428 A G 269 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs16853823,g1000:0.255591; 2 216203457 chr2:SNP:1429 G A 329 off_target DP=51;DP4=23,9,13,6;AD=32,19;TYPE=SNP;DBXREF=dbSNP:rs200721799,g1000:0.000399361,esp5400:0.00028,ExAC:0.000618; 2 216211712 chr2:SNP:1430 A T 580 off_target DP=23;DP4=0,0,4,19;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs10932609,g1000:1,esp5400:0.999814,ExAC:1; 2 216214492 chr2:SNP:1431 T G 1310 off_target DP=52;DP4=0,0,5,47;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs10498036,g1000:0.595248; 2 216235089 chr2:SNP:1432 C T 1788 . DP=71;DP4=0,0,33,38;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs1250209,g1000:0.9998,esp5400:0.999814,ExAC:1,MutationTaster:1; 2 216236532 chr2:SNP:1433 G A 390 off_target DP=33;DP4=12,2,17,2;AD=14,19;TYPE=SNP;DBXREF=dbSNP:rs10804241,g1000:0.330671; 2 216237929 chr2:SNP:1434 A T 262 off_target DP=28;DP4=15,0,13,0;AD=15,13;TYPE=SNP;DBXREF=dbSNP:rs2289199,g1000:0.334265; 2 216240126 chr2:INDEL:109 AAC A 322 . DP=39;DP4=13,9,5,11;AD=22,16;TYPE=INDEL;DBXREF=dbSNP:rs3214672,g1000:0.379593,ExAC:0.3; 2 216240584 chr2:SNP:1435 T G 325 off_target DP=29;DP4=0,13,0,16;AD=13,16;TYPE=SNP;DBXREF=dbSNP:rs6707530,g1000:0.415535; 2 216242917 chr2:SNP:1436 T A 561 . DP=79;DP4=21,24,17,16;AD=45,33;TYPE=SNP;DBXREF=dbSNP:rs1132741,g1000:0.324681,esp5400:0.187024,ExAC:0.287; 2 216243832 chr2:SNP:1437 T C 630 off_target DP=25;DP4=0,0,16,9;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs1250204,g1000:0.9375,esp5400:0.927403,ExAC:0.952; 2 216248606 chr2:SNP:1438 T C 131 low_coverage;off_target DP=11;DP4=4,0,7,0;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs13018173,g1000:0.374002; 2 216248707 chr2:INDEL:110 TAAAA TAA 363 off_target DP=33;DP4=11,4,10,8;AD=15,18;TYPE=INDEL;DBXREF=dbSNP:rs35639338,g1000:0.373802,ExAC:0.302; 2 216249587 chr2:SNP:1439 C T 830 . DP=32;DP4=0,0,20,12;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs13652,g1000:0.86861,esp5400:0.843465,ExAC:0.875; 2 216251697 chr2:SNP:1440 G A 136 low_coverage;off_target DP=16;DP4=0,9,0,7;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs35343655,g1000:0.373602,esp5400:0.238985,ExAC:0.295; 2 216253039 chr2:SNP:1441 G C 267 off_target DP=28;DP4=7,7,8,6;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs1250215,g1000:0.411741,esp5400:0.516918,ExAC:0.549; 2 216256615 chr2:SNP:1442 T C 243 low_coverage;off_target DP=16;DP4=0,4,0,12;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs6709607,g1000:0.689297; 2 216256707 chr2:SNP:1443 T C 166 low_coverage;off_target DP=10;DP4=0,3,0,7;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs10804242,g1000:0.690096; 2 216257970 chr2:SNP:1444 T C 120 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs10168572,g1000:0.0139776,esp5400:0.027341,ExAC:0.026; 2 216262621 chr2:SNP:1445 A C 404 off_target DP=55;DP4=6,26,4,18;AD=32,22;TYPE=SNP;DBXREF=dbSNP:rs6725958,g1000:0.654153,esp5400:0.592954,ExAC:0.601; 2 216263926 chr2:SNP:1446 C A 377 off_target DP=37;DP4=9,9,12,7;AD=18,19;TYPE=SNP;DBXREF=dbSNP:rs2692224,g1000:0.616813,esp5400:0.552566; 2 216263938 chr2:INDEL:111 CT CTT 416 off_target DP=63;DP4=20,17,15,9;AD=37,24;TYPE=INDEL;DBXREF=dbSNP:rs3832178,g1000:0.617013,ExAC:0.589; 2 216269209 chr2:SNP:1447 T G 437 . DP=73;DP4=21,27,15,10;AD=48,25;TYPE=SNP;DBXREF=dbSNP:rs1053238,g1000:0.286741,esp5400:0.341513,ExAC:0.364; 2 216269254 chr2:SNP:1448 T G 445 . DP=45;DP4=13,10,12,10;AD=23,22;TYPE=SNP;DBXREF=dbSNP:rs7589580,g1000:0.286941,esp5400:0.341885,ExAC:0.364; 2 216271763 chr2:SNP:1449 A T 174 low_coverage;off_target DP=11;DP4=3,0,7,1;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs17457002,g1000:0.316294; 2 216271812 chr2:SNP:1450 A T 567 off_target DP=43;DP4=12,4,19,8;AD=16,27;TYPE=SNP;DBXREF=dbSNP:rs7592898,g1000:0.276757,esp5400:0.328407,ExAC:0.357; 2 216272819 chr2:SNP:1451 C G 298 off_target DP=26;DP4=8,3,9,6;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs7570208,g1000:0.665935,esp5400:0.6095,ExAC:0.605; 2 216272900 chr2:SNP:1452 T G 881 . DP=36;DP4=0,0,22,14;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs2577301,g1000:0.9998,esp5400:0.999907,ExAC:1,MutationTaster:1; 2 216272907 chr2:SNP:1453 A T 168 . DP=36;DP4=18,8,6,4;AD=26,10;TYPE=SNP;DBXREF=dbSNP:rs7596677,g1000:0.421526,esp5400:0.250325,ExAC:0.339; 2 216274853 chr2:INDEL:112 AAC A 284 off_target DP=80;DP4=26,23,8,9;AD=49,17;TYPE=INDEL;DBXREF=dbSNP:rs796781337,g1000:0.39397,ExAC:0.242; 2 216299550 chr2:SNP:1454 G A 493 . DP=80;DP4=31,19,15,15;AD=50,30;TYPE=SNP;DBXREF=dbSNP:rs2577290,g1000:0.422324,esp5400:0.133761,ExAC:0.32; 2 216299551 chr2:SNP:1455 C A 570 . DP=86;DP4=30,22,18,15;AD=52,33;TYPE=SNP;DBXREF=dbSNP:rs2692234,g1000:0.422324,esp5400:0.122885,ExAC:0.32; 2 216299571 chr2:INDEL:113 T TTAC 659 off_target DP=103;DP4=32,30,16,19;AD=62,35;TYPE=INDEL;DBXREF=dbSNP:rs10648691,g1000:0.56889; 2 216299629 chr2:SNP:1456 C G 332 off_target DP=61;DP4=17,24,7,13;AD=41,20;TYPE=SNP;DBXREF=dbSNP:rs1250247,g1000:0.792532; 2 216300482 chr2:SNP:1457 T A 226 . DP=29;DP4=9,8,7,5;AD=17,12;TYPE=SNP;DBXREF=dbSNP:rs1250259,g1000:0.795128,esp5400:0.791109,ExAC:0.74,MutationTaster:0; 2 217002078 chr2:SNP:1458 C G 177 low_coverage;off_target DP=19;DP4=0,10,0,9;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs41296384,g1000:0.0139776; 2 217012901 chr2:SNP:1459 A G 1912 . DP=80;DP4=1,0,43,36;AD=1,79;TYPE=SNP;DBXREF=dbSNP:rs207906,g1000:0.882788,esp5400:0.872374,ExAC:0.871; 2 217055100 chr2:SNP:1460 G A 190 low_coverage;off_target DP=17;DP4=1,7,0,9;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs41302516,g1000:0.0113818,esp5400:0.02315,ExAC:0.02; 2 217541582 chr2:SNP:1461 T C 1794 . DP=73;DP4=0,0,38,34;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs2160549,g1000:0.978634,esp5400:0.977133,ExAC:0.994; 2 219128506 chr2:SNP:1462 C T 1352 off_target DP=57;DP4=0,0,13,43;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs2292549,g1000:0.788738; 2 219206919 chr2:SNP:1463 C T 219 off_target DP=28;DP4=3,13,6,6;AD=16,12;TYPE=SNP;DBXREF=dbSNP:rs3816562,g1000:0.480032,esp5400:0.426904,ExAC:0.522; 2 219209248 chr2:SNP:1464 G A 810 . DP=78;DP4=20,17,18,23;AD=37,41;TYPE=SNP;DBXREF=dbSNP:rs116144189,g1000:0.0071885,esp5400:0.014889,ExAC:0.011; 2 219209393 chr2:SNP:1465 A G 403 low_coverage;off_target DP=16;DP4=0,0,10,6;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs1350336,g1000:0.990216; 2 219249013 chr2:SNP:1466 C T 769 . DP=60;DP4=10,14,17,19;AD=24,36;TYPE=SNP;DBXREF=dbSNP:rs2276631,g1000:0.167931,esp5400:0.235081,ExAC:0.231; 2 219249771 chr2:SNP:1467 C G 260 low_coverage;off_target DP=14;DP4=3,0,9,2;AD=3,11;TYPE=SNP;DBXREF=dbSNP:rs6734861,g1000:0.147764; 2 219250003 chr2:SNP:1468 G C 444 off_target DP=40;DP4=3,15,9,13;AD=18,22;TYPE=SNP;DBXREF=dbSNP:rs3731865,g1000:0.144169,esp5400:0.210169,ExAC:0.228; 2 219252377 chr2:SNP:1469 C T 1042 off_target DP=75;DP4=11,16,19,29;AD=27,48;TYPE=SNP;DBXREF=dbSNP:rs2290708,g1000:0.147963,esp5400:0.222625,ExAC:0.214; 2 219254622 chr2:SNP:1470 A G 1134 . DP=45;DP4=0,0,32,13;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs2695342,g1000:0.984625,esp5400:0.986522,ExAC:0.996; 2 219257688 chr2:SNP:1471 T C 1840 off_target DP=71;DP4=0,0,47,24;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs2045433,g1000:0.986821,esp5400:0.990891,ExAC:0.997; 2 219259270 chr2:SNP:1472 G A 233 off_target DP=37;DP4=19,5,12,1;AD=24,13;TYPE=SNP;DBXREF=dbSNP:rs2279015,g1000:0.475839; 2 219527005 chr2:SNP:1473 C T 570 off_target DP=57;DP4=16,12,17,12;AD=28,29;TYPE=SNP;DBXREF=dbSNP:rs2303561,g1000:0.482827,esp5400:0.563952,ExAC:0.428; 2 219691566 chr2:SNP:1474 A G 240 low_coverage;off_target DP=9;DP4=0,0,8,1;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1467320,g1000:0.825879; 2 219692527 chr2:INDEL:114 GCCC GCCCC 269 off_target DP=25;DP4=0,0,18,6;AD=0,24;TYPE=INDEL;DBXREF=dbSNP:rs11385903,g1000:1,ExAC:1; 2 219692790 chr2:INDEL:115 AGGG AGGGG 212 . DP=22;DP4=1,1,3,17;AD=2,20;TYPE=INDEL;DBXREF=dbSNP:rs5838710,g1000:0.998403,ExAC:1; 2 219920037 chr2:SNP:1475 A G 777 . DP=87;DP4=23,18,26,16;AD=41,42;TYPE=SNP;DBXREF=dbSNP:rs394452,g1000:0.886182,esp5400:0.853318,ExAC:0.834; 2 219920412 chr2:SNP:1476 A G 1393 . DP=191;DP4=42,72,34,43;AD=114,77;TYPE=SNP;DBXREF=dbSNP:rs3731881,g1000:0.484824,esp5400:0.591374,ExAC:0.598; 2 219941063 chr2:SNP:1477 G A 137 low_coverage;off_target DP=18;DP4=6,5,4,3;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs897477,g1000:0.638379,esp5400:0.739914,ExAC:0.71; 2 220022176 chr2:SNP:1478 C T 759 off_target DP=31;DP4=0,0,22,9;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs6436120,g1000:0.902356,esp5400:0.913274,ExAC:0.964; 2 220022435 chr2:SNP:1479 G C 330 off_target DP=36;DP4=6,13,3,14;AD=19,17;TYPE=SNP;DBXREF=dbSNP:rs2030452,g1000:0.415735,esp5400:0.509297,ExAC:0.548; 2 220078496 chr2:SNP:1480 T C 1360 off_target DP=54;DP4=0,0,25,29;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs2139823,g1000:0.971046,esp5400:0.973179; 2 220083279 chr2:SNP:1481 C T 817 . DP=34;DP4=1,0,20,13;AD=1,33;TYPE=SNP;DBXREF=dbSNP:rs1109866,g1000:0.738019,esp5400:0.759911,ExAC:0.844; 2 220083453 chr2:SNP:1482 G T 265 low_coverage;off_target DP=13;DP4=0,1,4,8;AD=1,12;TYPE=SNP;DBXREF=dbSNP:rs1109867,g1000:0.738019; 2 220283277 chr2:SNP:1483 T C 363 low_coverage DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2017800,g1000:0.866014,esp5400:0.871523,ExAC:0.952,clinvar:rs2017800|2|2|2; 2 220284717 chr2:SNP:1484 G C 545 off_target DP=21;DP4=0,0,17,4;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2666106,g1000:0.990615; 2 220284779 chr2:SNP:1485 C T 2014 off_target DP=80;DP4=0,0,49,31;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs12991025,g1000:0.529353,esp5400:0.478156,ExAC:0.617,clinvar:rs12991025|2; 2 220415595 chr2:INDEL:116 GGA G 854 off_target DP=103;DP4=26,32,26,17;AD=58,43;TYPE=INDEL;DBXREF=dbSNP:rs146790993,g1000:0.383986,ExAC:0.408; 2 220415646 chr2:SNP:1486 T C 435 off_target DP=43;DP4=7,14,8,14;AD=21,22;TYPE=SNP;DBXREF=dbSNP:rs1043582,g1000:0.384185,esp5400:0.432282; 2 220415717 chr2:SNP:1487 G A 121 low_coverage;off_target DP=16;DP4=1,9,0,6;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs3731918,g1000:0.532947; 2 220415752 chr2:SNP:1488 C T 269 low_coverage;off_target DP=11;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6745782,g1000:0.928714; 2 220416570 chr2:SNP:1489 C T 337 low_coverage;off_target DP=13;DP4=0,0,2,11;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4672931,g1000:0.928714,esp5400:0.947993,ExAC:0.974; 2 220416591 chr2:SNP:1490 C T 202 low_coverage;off_target DP=8;DP4=0,0,3,5;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs4672932,g1000:0.928714; 2 220416803 chr2:SNP:1491 A T 685 off_target DP=28;DP4=0,0,20,8;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs4672933,g1000:0.978235,esp5400:0.983851,ExAC:0.993; 2 220416967 chr2:SNP:1492 C T 419 off_target DP=24;DP4=1,4,5,14;AD=5,19;TYPE=SNP;DBXREF=dbSNP:rs4672934,g1000:0.529153,esp5400:0.448761,ExAC:0.484; 2 220417228 chr2:SNP:1493 G T 227 off_target DP=22;DP4=8,3,11,0;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs60549465,g1000:0.339058,esp5400:0.377945,ExAC:0.391; 2 220417266 chr2:SNP:1494 C T 321 . DP=26;DP4=7,4,10,5;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs59332477,g1000:0.376597,esp5400:0.420485,ExAC:0.416,MutationTaster:1; 2 220419236 chr2:SNP:1495 T C 2240 . DP=89;DP4=0,0,57,32;AD=0,89;TYPE=SNP;DBXREF=dbSNP:rs10932813,g1000:0.985224,esp5400:0.989112,ExAC:0.996; 2 220419339 chr2:SNP:1496 T C 10000 . DP=129;DP4=0,0,52,77;AD=0,129;TYPE=SNP;DBXREF=dbSNP:rs10932814,g1000:0.961062,esp5400:0.961913,ExAC:0.985,MutationTaster:1; 2 220420785 chr2:SNP:1497 G A 1040 . DP=129;DP4=39,34,32,24;AD=73,56;TYPE=SNP;DBXREF=dbSNP:rs3087971,g1000:0.229233,esp5400:0.25959,ExAC:0.252,MutationTaster:1; 2 220420956 chr2:SNP:1498 A G 2744 . DP=106;DP4=0,0,42,64;AD=0,106;TYPE=SNP;DBXREF=dbSNP:rs10932816,g1000:0.963658,esp5400:0.970423,ExAC:0.989,MutationTaster:1; 2 220421417 chr2:SNP:1499 C G 352 . DP=29;DP4=2,10,2,15;AD=12,17;TYPE=SNP;DBXREF=dbSNP:rs1983210,g1000:0.724641,esp5400:0.702096,ExAC:0.74,MutationTaster:1; 2 220421479 chr2:SNP:1500 A G 110 low_coverage;off_target DP=13;DP4=0,7,0,6;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs13010015,g1000:0.233427,esp5400:0.251059,ExAC:0.221; 2 220422774 chr2:SNP:1501 A G 449 . DP=67;DP4=16,26,11,14;AD=42,25;TYPE=SNP;DBXREF=dbSNP:rs2278201,g1000:0.419129,esp5400:0.455327,ExAC:0.429,MutationTaster:1; 2 220427347 chr2:SNP:1502 G T 515 . DP=50;DP4=7,17,9,17;AD=24,26;TYPE=SNP;DBXREF=dbSNP:rs10804275,g1000:0.169728,esp5400:0.20796,ExAC:0.191; 2 220427395 chr2:SNP:1503 G A 225 . DP=20;DP4=0,9,0,11;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs3183099,g1000:0.164137,esp5400:0.190187,ExAC:0.133; 2 220427428 chr2:INDEL:117 GA G 298 off_target DP=22;DP4=0,8,0,14;AD=8,14;TYPE=INDEL;DBXREF=dbSNP:rs55904205,g1000:0.168331,ExAC:0.098; 2 220430203 chr2:SNP:1504 C T 497 . DP=54;DP4=5,24,3,22;AD=29,25;TYPE=SNP;DBXREF=dbSNP:rs1039898,g1000:0.792732,esp5400:0.826995,ExAC:0.865,MutationTaster:1; 2 220431919 chr2:SNP:1505 A G 467 low_coverage;off_target DP=18;DP4=0,0,10,8;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4674412,g1000:0.979633; 2 220432957 chr2:SNP:1506 G A 842 . DP=112;DP4=30,35,19,27;AD=65,46;TYPE=SNP;DBXREF=dbSNP:rs35009641,g1000:0.0153754,esp5400:0.038345,ExAC:0.039,MutationTaster:1; 2 220435034 chr2:SNP:1507 A G 247 . DP=30;DP4=16,1,12,1;AD=17,13;TYPE=SNP;DBXREF=dbSNP:rs10180675,g1000:0.783347,esp5400:0.818906,ExAC:0.861,clinvar:rs10180675|2; 2 220439678 chr2:SNP:1508 C T 475 . DP=75;DP4=26,23,18,8;AD=49,26;TYPE=SNP;DBXREF=dbSNP:rs12720063,g1000:0.153355,esp5400:0.173731,ExAC:0.181; 2 220494118 chr2:SNP:1509 A C 1765 . DP=78;DP4=0,0,29,44;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs597306,g1000:0.954673,esp5400:0.947104,ExAC:0.982,MutationTaster:0; 2 220495167 chr2:SNP:1510 A C 545 off_target DP=21;DP4=0,0,1,20;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs612078,g1000:0.944888; 2 220500321 chr2:SNP:1511 C G 403 low_coverage;off_target DP=17;DP4=0,1,5,11;AD=1,16;TYPE=SNP;DBXREF=dbSNP:rs2305055,g1000:0.232827; 2 220500423 chr2:SNP:1512 A G 479 low_coverage DP=19;DP4=0,0,14,5;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs589767,g1000:0.946885,esp5400:0.947936,ExAC:0.984; 2 220500426 chr2:SNP:1513 A G 403 low_coverage DP=17;DP4=0,1,13,3;AD=1,16;TYPE=SNP;DBXREF=dbSNP:rs639214,g1000:0.90635,esp5400:0.892711,ExAC:0.963; 2 220505265 chr2:SNP:1514 T C 1374 . DP=53;DP4=0,0,27,26;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs684428,g1000:0.690895,esp5400:0.710913,ExAC:0.794; 2 223066237 chr2:SNP:1515 G A 431 off_target DP=41;DP4=7,13,7,14;AD=20,21;TYPE=SNP;DBXREF=dbSNP:rs13014735,g1000:0.0756789,esp5400:0.060915; 2 223084833 chr2:SNP:1516 C T 270 off_target DP=25;DP4=8,4,12,1;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs13022712,g1000:0.0758786,esp5400:0.057817,ExAC:0.099; 2 223096709 chr2:SNP:1517 G C 276 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1965791,g1000:0.662141; 2 223161889 chr2:SNP:1518 A G 1920 . DP=78;DP4=1,0,19,58;AD=1,77;TYPE=SNP;DBXREF=dbSNP:rs12623857,g1000:0.904353,esp5400:0.848304,ExAC:0.87,clinvar:rs12623857|2; 2 223162024 chr2:SNP:1519 T G 479 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs6754024,g1000:0.903954; 2 223917629 chr2:SNP:1520 C T 1126 . DP=107;DP4=37,12,39,18;AD=49,57;TYPE=SNP;DBXREF=dbSNP:rs3795886,g1000:0.72504,esp5400:0.701524,ExAC:0.713; 2 223917812 chr2:SNP:1521 T C 1637 . DP=65;DP4=0,0,11,54;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs10201907,g1000:0.966653,esp5400:0.956776,ExAC:0.948; 2 223917983 chr2:SNP:1522 T G 533 . DP=40;DP4=7,7,13,13;AD=14,26;TYPE=SNP;DBXREF=dbSNP:rs12621643,g1000:0.670927,esp5400:0.638527,ExAC:0.702,MutationTaster:0; 2 223918080 chr2:SNP:1523 C G 479 low_coverage;off_target DP=19;DP4=0,0,6,13;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs10189762,g1000:0.945088,esp5400:0.938446,ExAC:0.934; 2 225368321 chr2:SNP:1524 A G 409 off_target DP=41;DP4=17,2,19,3;AD=19,22;TYPE=SNP;DBXREF=dbSNP:rs3738951,g1000:0.539736,esp5400:0.462577,ExAC:0.487; 2 225434256 chr2:SNP:1525 C G 161 low_coverage;off_target DP=16;DP4=7,1,7,1;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs16825685,g1000:0.293131; 2 225434445 chr2:SNP:1526 A G 449 . DP=56;DP4=12,20,10,14;AD=32,24;TYPE=SNP;DBXREF=dbSNP:rs10498163,g1000:0.28095,ExAC:0.263; 2 227661390 chr2:SNP:1527 C T 567 . DP=43;DP4=4,12,11,16;AD=16,27;TYPE=SNP;DBXREF=dbSNP:rs141094678,g1000:0.000199681,esp5400:0.000372,ExAC:0.0001565,MutationTaster:0; 2 227872182 chr2:SNP:1528 G A 785 . DP=112;DP4=33,34,22,23;AD=67,45;TYPE=SNP;DBXREF=dbSNP:rs2228557,g1000:0.514377,esp5400:0.454536,ExAC:0.466,clinvar:rs2228557|2; 2 227872995 chr2:SNP:1529 T C 309 . DP=39;DP4=11,10,6,11;AD=21,17;TYPE=SNP;DBXREF=dbSNP:rs2228555,g1000:0.640575,esp5400:0.585758,ExAC:0.56,clinvar:rs2228555|2; 2 227873028 chr2:SNP:1530 A G 275 . DP=39;DP4=13,11,6,9;AD=24,15;TYPE=SNP;DBXREF=dbSNP:rs13419076,g1000:0.515575,esp5400:0.448574,ExAC:0.464,clinvar:rs13419076|2; 2 227874957 chr2:SNP:1531 C T 482 off_target DP=37;DP4=9,5,16,7;AD=14,23;TYPE=SNP;DBXREF=dbSNP:rs4423583,g1000:0.516573; 2 227877037 chr2:SNP:1532 G A 139 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs10188770,g1000:0.520567,esp5400:0.464583,ExAC:0.476; 2 227886773 chr2:SNP:1533 A G 790 . DP=75;DP4=23,11,20,21;AD=34,41;TYPE=SNP;DBXREF=dbSNP:rs3752895,g1000:0.526158,esp5400:0.46864,ExAC:0.476,clinvar:rs3752895|2,MutationTaster:0; 2 227886925 chr2:SNP:1534 C T 183 off_target DP=27;DP4=4,13,4,6;AD=17,10;TYPE=SNP;DBXREF=dbSNP:rs3752896,g1000:0.448482,esp5400:0.402434,ExAC:0.454; 2 227892498 chr2:SNP:1535 A G 245 low_coverage;off_target DP=17;DP4=5,1,11,0;AD=6,11;TYPE=SNP;DBXREF=dbSNP:rs7580776,g1000:0.0814696; 2 227892619 chr2:SNP:1536 C T 291 . DP=42;DP4=18,9,9,6;AD=27,15;TYPE=SNP;DBXREF=dbSNP:rs2228556,g1000:0.491813,esp5400:0.445138,ExAC:0.469,clinvar:rs2228556|2; 2 227892720 chr2:SNP:1537 C T 227 . DP=40;DP4=15,12,6,7;AD=27,13;TYPE=SNP;DBXREF=dbSNP:rs2229813,g1000:0.493011,esp5400:0.444771,ExAC:0.461,clinvar:rs2229813|4|2,MutationTaster:0; 2 227895125 chr2:SNP:1538 A G 1216 off_target DP=119;DP4=35,22,32,30;AD=57,62;TYPE=SNP;DBXREF=dbSNP:rs1917127,g1000:0.496605,esp5400:0.444388,ExAC:0.472; 2 227896652 chr2:SNP:1539 C G 949 . DP=117;DP4=33,33,29,22;AD=66,51;TYPE=SNP;DBXREF=dbSNP:rs13423714,g1000:0.496006,esp5400:0.440302,ExAC:0.47,clinvar:rs13423714|2; 2 227896886 chr2:SNP:1540 C T 531 . DP=51;DP4=11,14,13,13;AD=25,26;TYPE=SNP;DBXREF=dbSNP:rs2229812,g1000:0.495607,esp5400:0.441663,ExAC:0.471,clinvar:rs2229812|2; 2 227896976 chr2:SNP:1541 C T 438 . DP=42;DP4=5,15,4,18;AD=20,22;TYPE=SNP;DBXREF=dbSNP:rs10203363,g1000:0.495008,esp5400:0.439933,ExAC:0.469,clinvar:rs10203363|2; 2 227897076 chr2:SNP:1542 A G 161 low_coverage;off_target DP=9;DP4=0,2,0,7;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs10179756,g1000:0.495407; 2 227914625 chr2:SNP:1543 T C 139 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2272202,g1000:0.553115; 2 227914655 chr2:SNP:1544 C G 415 off_target DP=30;DP4=9,1,15,5;AD=10,20;TYPE=SNP;DBXREF=dbSNP:rs2272203,g1000:0.553115; 2 227914975 chr2:SNP:1545 T G 429 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2251223,g1000:0.685903; 2 227915832 chr2:SNP:1546 G A 462 . DP=51;DP4=13,14,11,13;AD=27,24;TYPE=SNP;DBXREF=dbSNP:rs1800517,g1000:0.547324,esp5400:0.51586,ExAC:0.52,clinvar:rs1800517|2,MutationTaster:1; 2 227917240 chr2:SNP:1547 C G 370 off_target DP=38;DP4=6,12,6,14;AD=18,20;TYPE=SNP;DBXREF=dbSNP:rs3769644,g1000:0.551917; 2 227917270 chr2:SNP:1548 T C 225 low_coverage;off_target DP=15;DP4=0,5,0,10;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs3769643,g1000:0.551917; 2 227917323 chr2:SNP:1549 T C 179 low_coverage;off_target DP=14;DP4=0,6,0,8;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs3769642,g1000:0.551917; 2 227919609 chr2:SNP:1550 A G 506 off_target DP=21;DP4=0,1,0,20;AD=1,20;TYPE=SNP;DBXREF=dbSNP:rs4675142,g1000:0.670927; 2 227919630 chr2:SNP:1551 C T 233 off_target DP=20;DP4=0,9,0,11;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs55760660,g1000:0.470248; 2 227922454 chr2:SNP:1552 G A 202 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2141829,g1000:0.685503; 2 227925097 chr2:SNP:1553 C T 392 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs6436650,g1000:0.683307; 2 227942519 chr2:SNP:1554 A G 126 low_coverage;off_target DP=14;DP4=7,1,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs7597336,g1000:0.141573; 2 227947053 chr2:SNP:1555 C G 119 low_coverage;off_target DP=10;DP4=1,3,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs10187611,g1000:0.232428; 2 227966148 chr2:SNP:1556 C T 933 off_target DP=37;DP4=0,0,26,11;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs16823202,g1000:0.583666,esp5400:0.646729; 2 227967330 chr2:SNP:1557 C G 269 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1574391,g1000:0.602636; 2 227967601 chr2:INDEL:118 ACAATATTTCAGCAATAGGGAAAG A 479 off_target DP=48;DP4=17,7,3,20;AD=24,23;TYPE=INDEL;DBXREF=dbSNP:rs11274738,g1000:0.604832,ExAC:0.546; 2 227967830 chr2:INDEL:119 GAAAAAAAAAAA GAAAAAAAAAA 128 homopolymer_region;off_target DP=36;DP4=2,1,22,11;AD=3,33;TYPE=INDEL;DBXREF=dbSNP:rs10707643,g1000:0.655152,ExAC:0.648; 2 227968553 chr2:SNP:1558 A C 318 low_coverage;off_target DP=13;DP4=0,0,11,2;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7602059,g1000:0.605431; 2 227973410 chr2:SNP:1559 C A 2202 off_target DP=85;DP4=0,0,22,63;AD=0,85;TYPE=SNP;DBXREF=dbSNP:rs55741079,g1000:0.339058,esp5400:0.488559; 2 227973623 chr2:SNP:1560 A G 1296 off_target DP=53;DP4=0,0,26,27;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs12475686,g1000:0.600439,esp5400:0.624922,ExAC:0.605; 2 227974113 chr2:SNP:1561 A G 337 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6436654,g1000:0.689497; 2 228104760 chr2:SNP:1562 C T 199 low_coverage;off_target DP=13;DP4=4,0,7,2;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs7579991,g1000:0.795727; 2 228109626 chr2:INDEL:120 T TG 328 off_target DP=55;DP4=26,7,12,8;AD=33,20;TYPE=INDEL;DBXREF=dbSNP:rs113428834,g1000:0.749201; 2 228109784 chr2:SNP:1563 C T 481 off_target DP=53;DP4=5,23,2,23;AD=28,25;TYPE=SNP;DBXREF=dbSNP:rs6750210,g1000:0.748003,esp5400:0.757905; 2 228111435 chr2:SNP:1564 T C 434 . DP=46;DP4=9,14,7,16;AD=23,23;TYPE=SNP;DBXREF=dbSNP:rs10178458,g1000:0.796725,esp5400:0.774173,ExAC:0.83,clinvar:rs10178458|2,MutationTaster:0.62; 2 228112186 chr2:SNP:1565 A G 545 off_target DP=21;DP4=0,0,18,3;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs4321358,g1000:0.989417,esp5400:0.975572; 2 228113175 chr2:SNP:1566 A G 811 . DP=88;DP4=20,27,18,23;AD=47,41;TYPE=SNP;DBXREF=dbSNP:rs6436669,g1000:0.796326,esp5400:0.773521,ExAC:0.83,clinvar:rs6436669|2,MutationTaster:0; 2 228113422 chr2:SNP:1567 C A 217 low_coverage;off_target DP=12;DP4=0,3,1,8;AD=3,9;TYPE=SNP;DBXREF=dbSNP:rs62277853,g1000:0.0994409; 2 228118403 chr2:SNP:1568 T G 318 low_coverage;off_target DP=13;DP4=0,0,2,11;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs12621551,g1000:0.786941,esp5400:0.771161,ExAC:0.812; 2 228128540 chr2:SNP:1569 C T 1243 . DP=51;DP4=0,0,29,21;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs10205042,g1000:0.767572,esp5400:0.715678,ExAC:0.764,clinvar:rs10205042|2; 2 228131912 chr2:SNP:1570 C A 591 off_target DP=25;DP4=0,0,6,18;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs10933174,g1000:0.354633; 2 228135631 chr2:SNP:1571 C T 2492 . DP=102;DP4=0,0,36,66;AD=0,102;TYPE=SNP;DBXREF=dbSNP:rs28381984,g1000:0.39996,esp5400:0.385167,ExAC:0.469,clinvar:rs28381984|2,MutationTaster:1; 2 228145543 chr2:SNP:1572 C T 252 low_coverage;off_target DP=10;DP4=0,0,7,3;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6436671,g1000:0.910144; 2 228149107 chr2:SNP:1573 A G 467 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs6436672,g1000:0.814896,esp5400:0.876391,ExAC:0.868; 2 228159063 chr2:SNP:1574 T C 675 off_target DP=26;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs6436675,g1000:1; 2 228169632 chr2:SNP:1575 C T 580 off_target DP=23;DP4=0,0,13,10;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs11680670,g1000:0.26897; 2 228173636 chr2:SNP:1576 A G 464 . DP=42;DP4=12,7,16,7;AD=19,23;TYPE=SNP;DBXREF=dbSNP:rs77964815,g1000:0.00259585,esp5400:0.007849,ExAC:0.006761,clinvar:rs77964815|3,MutationTaster:0.997; 2 228176357 chr2:SNP:1577 T G 454 low_coverage;off_target DP=18;DP4=0,0,18,0;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4455148,g1000:1; 2 228194480 chr2:SNP:1578 A T 655 . DP=29;DP4=2,0,10,17;AD=2,27;TYPE=SNP;DBXREF=dbSNP:rs3211097,g1000:0.269369,esp5400:0.262874,ExAC:0.33,MutationTaster:1; 2 228194481 chr2:SNP:1579 G T 641 . DP=27;DP4=1,0,11,15;AD=1,26;TYPE=SNP;DBXREF=dbSNP:rs3211098,g1000:0.272364,esp5400:0.261852,ExAC:0.33,MutationTaster:1; 2 228194570 chr2:SNP:1580 G A 331 low_coverage;off_target DP=15;DP4=0,0,3,11;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6706656,g1000:0.839856,esp5400:0.90569; 2 228197368 chr2:SNP:1581 A G 881 off_target DP=36;DP4=0,0,11,25;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs4500938,g1000:0.839856; 2 228204929 chr2:SNP:1582 C T 378 low_coverage;off_target DP=15;DP4=0,0,13,2;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs4420693,g1000:0.839657; 2 228204982 chr2:SNP:1583 C T 441 low_coverage;off_target DP=18;DP4=0,0,10,8;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4442987,g1000:0.839657,esp5400:0.859825,ExAC:0.904; 2 228207625 chr2:SNP:1584 G A 294 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6738078,g1000:0.730431; 2 228560800 chr2:INDEL:121 GAAAAAAAA GAAAAAAA 200 . DP=40;DP4=7,0,12,21;AD=7,33;TYPE=INDEL;DBXREF=dbSNP:rs11334205,g1000:0.941294,ExAC:0.983,clinvar:rs11334205|2; 2 230633572 chr2:INDEL:122 T TAAATC 113 off_target DP=21;DP4=0,14,0,6;AD=14,6;TYPE=INDEL;DBXREF=dbSNP:rs3215750,g1000:0.296725; 2 230634187 chr2:SNP:1585 T A 146 low_coverage;off_target DP=11;DP4=0,4,0,7;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs6759674,g1000:0.229832; 2 230641870 chr2:SNP:1586 C T 241 low_coverage;off_target DP=16;DP4=5,0,11,0;AD=5,11;TYPE=SNP;DBXREF=dbSNP:rs7584686,g1000:0.132987; 2 230652544 chr2:INDEL:123 TCC TC 455 off_target DP=43;DP4=0,1,0,39;AD=1,39;TYPE=INDEL;DBXREF=dbSNP:rs11320004,g1000:0.979633; 2 230655733 chr2:SNP:1587 C T 168 low_coverage;off_target DP=11;DP4=3,0,8,0;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs722268,g1000:0.965855; 2 230661609 chr2:SNP:1588 G C 383 off_target DP=35;DP4=0,16,0,19;AD=16,19;TYPE=SNP;DBXREF=dbSNP:rs143306420,g1000:0.00539137; 2 230663443 chr2:SNP:1589 A C 157 low_coverage;off_target DP=8;DP4=1,0,7,0;AD=1,7;TYPE=SNP;DBXREF=dbSNP:rs6749045,g1000:0.294529; 2 230663576 chr2:SNP:1590 C T 605 off_target DP=47;DP4=9,9,14,15;AD=18,29;TYPE=SNP;DBXREF=dbSNP:rs6720868,g1000:0.336262,esp5400:0.374512,ExAC:0.318; 2 230666898 chr2:SNP:1591 A G 205 off_target DP=32;DP4=16,5,8,3;AD=21,11;TYPE=SNP;DBXREF=dbSNP:rs10432554,g1000:0.310104; 2 230668858 chr2:SNP:1592 T C 814 . DP=85;DP4=20,22,21,21;AD=42,42;TYPE=SNP;DBXREF=dbSNP:rs13018957,g1000:0.350839,esp5400:0.391409,ExAC:0.426; 2 230668968 chr2:SNP:1593 G A 803 off_target DP=65;DP4=7,19,16,23;AD=26,39;TYPE=SNP;DBXREF=dbSNP:rs4972915,g1000:0.815495,esp5400:0.818466,ExAC:0.791; 2 230668982 chr2:SNP:1594 T G 512 off_target DP=51;DP4=7,18,7,19;AD=25,26;TYPE=SNP;DBXREF=dbSNP:rs4973229,g1000:0.349441,esp5400:0.371231,ExAC:0.421; 2 230744570 chr2:SNP:1595 C T 403 low_coverage;off_target DP=16;DP4=0,0,15,1;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs479492,g1000:0.97524; 2 231042802 chr2:SNP:1596 C T 170 off_target DP=35;DP4=20,5,6,4;AD=25,10;TYPE=SNP;DBXREF=dbSNP:rs2241525,g1000:0.133986; 2 231050715 chr2:SNP:1597 A G 1809 . DP=74;DP4=0,0,46,28;AD=0,74;TYPE=SNP;DBXREF=dbSNP:rs3948464,g1000:0.903954,esp5400:0.863357,ExAC:0.887,clinvar:rs3948464|0,MutationTaster:0; 2 231072709 chr2:SNP:1598 C T 756 . DP=30;DP4=0,0,22,8;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs1365776,g1000:0.802516,esp5400:0.701488,ExAC:0.665,MutationTaster:0; 2 231076032 chr2:SNP:1599 G T 234 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3769837,g1000:0.762181; 2 231076289 chr2:SNP:1600 T G 438 off_target DP=20;DP4=0,1,8,11;AD=1,19;TYPE=SNP;DBXREF=dbSNP:rs3820974,g1000:0.541733,esp5400:0.4723,ExAC:0.478; 2 231077112 chr2:SNP:1601 G A 1055 . DP=83;DP4=22,10,37,14;AD=32,51;TYPE=SNP;DBXREF=dbSNP:rs28930679,g1000:0.159145,esp5400:0.213237,ExAC:0.211,MutationTaster:0; 2 231077154 chr2:SNP:1602 G A 1351 . DP=105;DP4=20,18,36,31;AD=38,67;TYPE=SNP;DBXREF=dbSNP:rs41309096,g1000:0.228834,esp5400:0.286113,ExAC:0.238; 2 231077725 chr2:SNP:1603 A G 367 low_coverage DP=15;DP4=0,0,2,13;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs1129411,g1000:0.951078,esp5400:0.916527,ExAC:0.909,MutationTaster:0; 2 231081384 chr2:SNP:1604 T C 245 low_coverage;off_target DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs7580900,g1000:0.496006; 2 231327291 chr2:SNP:1605 A G 710 off_target DP=29;DP4=0,0,11,18;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs1649863,g1000:0.262181,esp5400:0.273964,ExAC:0.292; 2 231328696 chr2:SNP:1606 C T 355 low_coverage;off_target DP=16;DP4=1,0,15,0;AD=1,15;TYPE=SNP;DBXREF=dbSNP:rs2306274,g1000:0.3123; 2 231328720 chr2:SNP:1607 C T 377 low_coverage;off_target DP=16;DP4=1,0,14,1;AD=1,15;TYPE=SNP;DBXREF=dbSNP:rs2306275,g1000:0.113019; 2 231328728 chr2:SNP:1608 C T 416 low_coverage;off_target DP=18;DP4=1,0,14,3;AD=1,17;TYPE=SNP;DBXREF=dbSNP:rs2306276,g1000:0.194289,esp5400:0.288188; 2 231331701 chr2:INDEL:124 AGG AGGG 107 low_coverage;off_target DP=10;DP4=0,0,9,0;AD=0,9;TYPE=INDEL;DBXREF=dbSNP:rs3214547,g1000:0.664736; 2 231331706 chr2:SNP:1609 C T 299 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2303609,g1000:0.179113; 2 231331799 chr2:SNP:1610 T C 1385 off_target DP=55;DP4=0,0,32,23;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs1649869,g1000:0.669329,esp5400:0.712958,ExAC:0.72; 2 231331896 chr2:SNP:1611 G A 2616 . DP=104;DP4=0,0,50,54;AD=0,104;TYPE=SNP;DBXREF=dbSNP:rs1050224,g1000:0.664936,esp5400:0.709611,ExAC:0.719,MutationTaster:0; 2 231333763 chr2:SNP:1612 A G 681 . DP=27;DP4=0,0,14,13;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs12724,g1000:0.179912,esp5400:0.246746,ExAC:0.262,MutationTaster:0; 2 231333834 chr2:SNP:1613 G A 685 off_target DP=28;DP4=0,0,13,15;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs1649873,g1000:0.182508,esp5400:0.250372,ExAC:0.263; 2 231333852 chr2:SNP:1614 A C 781 off_target DP=31;DP4=0,0,13,18;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs1649874,g1000:0.182508,esp5400:0.250093,ExAC:0.263; 2 231333890 chr2:SNP:1615 C T 504 off_target DP=20;DP4=0,0,9,11;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1649875,g1000:0.182508; 2 231334679 chr2:SNP:1616 A G 983 off_target DP=39;DP4=0,0,27,12;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs1678162,g1000:0.183906,esp5400:0.251675,ExAC:0.253; 2 231337960 chr2:SNP:1617 C T 337 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1615190,g1000:0.811701; 2 231338211 chr2:SNP:1618 T G 545 off_target DP=21;DP4=0,0,4,17;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1678169,g1000:0.181909; 2 231405572 chr2:SNP:1619 T G 669 off_target DP=84;DP4=36,12,26,10;AD=48,36;TYPE=SNP;DBXREF=dbSNP:rs4973329,g1000:0.160343,esp5400:0.168498,ExAC:0.195; 2 231406194 chr2:SNP:1620 G A 194 off_target DP=22;DP4=0,12,0,10;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs866270,g1000:0.159944; 2 231406259 chr2:SNP:1621 G A 504 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1678149,g1000:1; 2 231406332 chr2:SNP:1622 T G 187 low_coverage;off_target DP=12;DP4=1,3,1,7;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs6728193,g1000:0.546725; 2 231406680 chr2:SNP:1623 T C 1555 . DP=60;DP4=0,0,32,28;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs836237,g1000:0.727436,esp5400:0.821262,ExAC:0.799,MutationTaster:0; 2 231406846 chr2:SNP:1624 G A 230 low_coverage;off_target DP=14;DP4=0,4,0,10;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs10199013,g1000:0.343251; 2 231407372 chr2:SNP:1625 T C 138 low_coverage;off_target DP=6;DP4=0,0,5,1;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs864460,g1000:0.752396; 2 231407519 chr2:SNP:1626 C T 778 off_target DP=30;DP4=0,0,26,4;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs6717269,g1000:0.729633,esp5400:0.81885,ExAC:0.799; 2 231407663 chr2:SNP:1627 C T 505 . DP=51;DP4=6,20,7,18;AD=26,25;TYPE=SNP;DBXREF=dbSNP:rs9288668,g1000:0.343051,esp5400:0.369731,ExAC:0.428; 2 231774844 chr2:SNP:1628 G A 261 low_coverage DP=16;DP4=2,2,7,5;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs2396777,g1000:0.345647,esp5400:0.309072,ExAC:0.218; 2 231775094 chr2:SNP:1629 C A 123 low_coverage DP=15;DP4=7,1,4,3;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs3749073,g1000:0.203474,esp5400:0.17401,ExAC:0.128,MutationTaster:0.966; 2 231775297 chr2:SNP:1630 T G 128 . DP=20;DP4=5,8,4,3;AD=13,7;TYPE=SNP;DBXREF=dbSNP:rs1992186,g1000:0.496206,esp5400:0.530861,ExAC:0.39; 2 232790053 chr2:SNP:1631 C T 219 off_target DP=22;DP4=7,4,10,1;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs5268,g1000:0.419529; 2 232888856 chr2:SNP:1632 T G 269 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs896990,g1000:0.772364; 2 233028070 chr2:SNP:1633 A G 429 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs3116181,g1000:0.322684; 2 233199346 chr2:SNP:1634 T C 187 low_variant_fraction DP=118;DP4=52,52,7,7;AD=104,14;TYPE=SNP;DBXREF=dbSNP:rs763103187,esp5400:0.008912,clinvar:rs763103187|3,MutationTaster:1; 2 233199380 chr2:SNP:1635 A G 113 low_variant_fraction DP=114;DP4=25,80,3,6;AD=105,9;TYPE=SNP;DBXREF=dbSNP:rs2697798,clinvar:rs2697798|0,MutationTaster:1; 2 233201328 chr2:SNP:1636 A G 407 . DP=47;DP4=6,19,7,15;AD=25,22;TYPE=SNP;DBXREF=dbSNP:rs3811578,g1000:0.202077,esp5400:0.101022,ExAC:0.132,clinvar:rs3811578|2,MutationTaster:0.999; 2 233385202 chr2:SNP:1637 C T 401 low_coverage;off_target DP=19;DP4=1,0,13,5;AD=1,18;TYPE=SNP;DBXREF=dbSNP:rs2741294,g1000:0.306709; 2 233385396 chr2:SNP:1638 G A 168 . DP=23;DP4=6,8,3,6;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs1550094,g1000:0.665735,ExAC:0.609; 2 233386229 chr2:SNP:1639 T C 519 off_target DP=20;DP4=0,0,2,18;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2853444,g1000:0.859225; 2 233386583 chr2:SNP:1640 T C 1129 . DP=95;DP4=24,17,30,24;AD=41,54;TYPE=SNP;DBXREF=dbSNP:rs2853445,g1000:0.444688,ExAC:0.341; 2 233387007 chr2:SNP:1641 A G 260 low_coverage;off_target DP=10;DP4=0,0,4,6;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2741297,g1000:0.767572; 2 233388813 chr2:SNP:1642 T G 1486 . DP=59;DP4=0,0,34,25;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs2741299,g1000:0.861621,ExAC:0.767; 2 233389326 chr2:SNP:1643 C T 203 low_coverage;off_target DP=19;DP4=9,0,7,3;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs2853446,g1000:0.480232; 2 233389918 chr2:SNP:1644 A G 245 low_coverage DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2853447,g1000:0.707668,ExAC:0.609; 2 233390937 chr2:SNP:1645 A G 347 . DP=27;DP4=3,7,7,10;AD=10,17;TYPE=SNP;DBXREF=dbSNP:rs2245601,g1000:0.483427,esp5400:0.448587,ExAC:0.498,clinvar:rs2245601|2; 2 233407120 chr2:SNP:1646 C T 262 off_target DP=34;DP4=12,8,7,7;AD=20,14;TYPE=SNP;DBXREF=dbSNP:rs2853462,g1000:0.171126,esp5400:0.205057,ExAC:0.213,clinvar:rs2853462|2; 2 233408220 chr2:INDEL:125 AGGGGGGG AGGGGGG 354 off_target DP=62;DP4=2,8,13,37;AD=10,50;TYPE=INDEL;DBXREF=dbSNP:rs10714586; 2 233408239 chr2:SNP:1647 C G 1235 off_target DP=49;DP4=0,0,14,35;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs2573206,g1000:0.86222; 2 233408283 chr2:SNP:1648 C T 586 off_target DP=60;DP4=10,20,13,17;AD=30,30;TYPE=SNP;DBXREF=dbSNP:rs13018423,g1000:0.297324,esp5400:0.217274,ExAC:0.297,clinvar:rs13018423|2; 2 233599904 chr2:SNP:1649 A C 298 . DP=44;DP4=13,14,8,9;AD=27,17;TYPE=SNP;DBXREF=dbSNP:rs11555646,g1000:0.359425,esp5400:0.31874,ExAC:0.354; 2 233612557 chr2:SNP:1650 C T 203 low_coverage;off_target DP=19;DP4=0,9,0,10;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs3817311,g1000:0.359225; 2 233620927 chr2:INDEL:126 T TTTTTTTTTTTTTTTTTTTTT 104 . DP=29;DP4=12,11,0,6;AD=23,6;TYPE=INDEL; 2 233641083 chr2:SNP:1651 G C 326 off_target DP=33;DP4=13,3,11,6;AD=16,17;TYPE=SNP;DBXREF=dbSNP:rs737027,g1000:0.687101,esp5400:0.665796,ExAC:0.609; 2 233708806 chr2:SNP:1652 A G 475 . DP=27;DP4=5,1,14,7;AD=6,21;TYPE=SNP;DBXREF=dbSNP:rs3816334,g1000:0.640375,esp5400:0.679156,ExAC:0.633,MutationTaster:1; 2 233712049 chr2:SNP:1653 G A 180 low_coverage DP=16;DP4=7,0,8,1;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs2305137,g1000:0.605232,esp5400:0.64287,ExAC:0.635; 2 233712109 chr2:SNP:1654 A G 282 . DP=41;DP4=21,4,13,3;AD=25,16;TYPE=SNP;DBXREF=dbSNP:rs72554081,g1000:0.000798722,esp5400:0.001022,ExAC:0.001573,MutationTaster:1; 2 233712226 chr2:INDEL:127 CACA C 1271 . DP=151;DP4=46,38,25,39;AD=84,64;TYPE=INDEL;DBXREF=dbSNP:rs10555297,g1000:0.559105,ExAC:0.549; 2 233712296 chr2:SNP:1655 G A 416 off_target DP=50;DP4=8,20,5,17;AD=28,22;TYPE=SNP;DBXREF=dbSNP:rs6437074,g1000:0.639976,esp5400:0.684215,ExAC:0.644; 2 233721455 chr2:SNP:1656 G A 202 off_target DP=22;DP4=7,5,5,5;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs1947105,g1000:0.640176,esp5400:0.681573,ExAC:0.645; 2 233899126 chr2:SNP:1657 C A 1170 . DP=102;DP4=25,19,28,30;AD=44,58;TYPE=SNP;DBXREF=dbSNP:rs2233391,g1000:0.232029,esp5400:0.386689,ExAC:0.376,MutationTaster:0; 2 234526871 chr2:SNP:1658 C G 605 . DP=24;DP4=0,0,7,17;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs1042597,g1000:0.25599,esp5400:0.18628,ExAC:0.267,MutationTaster:0; 2 234627937 chr2:SNP:1659 T C 580 . DP=23;DP4=0,0,10,13;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2011404,g1000:0.907947,esp5400:0.874233,ExAC:0.866; 2 234637803 chr2:SNP:1660 T C 217 low_coverage DP=16;DP4=4,1,8,3;AD=5,11;TYPE=SNP;DBXREF=dbSNP:rs3821242,g1000:0.534944,esp5400:0.511531,ExAC:0.479,MutationTaster:0; 2 234637853 chr2:SNP:1661 G A 168 . DP=23;DP4=8,6,5,4;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs6706232,g1000:0.572484,esp5400:0.556702,ExAC:0.491; 2 234637912 chr2:SNP:1662 T C 177 low_coverage DP=19;DP4=5,5,2,7;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs6431625,g1000:0.434105,esp5400:0.488288,ExAC:0.396,MutationTaster:0; 2 234638249 chr2:SNP:1663 A G 366 . DP=32;DP4=7,6,15,4;AD=13,19;TYPE=SNP;DBXREF=dbSNP:rs7574296,g1000:0.573083,esp5400:0.55726,ExAC:0.491; 2 238243145 chr2:INDEL:128 C CTGT 140 off_target DP=35;DP4=24,3,7,1;AD=27,8;TYPE=INDEL;DBXREF=dbSNP:rs111578971,g1000:0.0469249; 2 238243464 chr2:SNP:1664 C G 1654 . DP=169;DP4=32,52,42,41;AD=84,83;TYPE=SNP;DBXREF=dbSNP:rs2270669,g1000:0.792332,esp5400:0.835378,ExAC:0.773,clinvar:rs2270669|2,MutationTaster:1; 2 238243656 chr2:SNP:1665 C T 166 off_target DP=21;DP4=3,8,1,8;AD=11,9;TYPE=SNP;DBXREF=dbSNP:rs11681749,g1000:0.0471246; 2 238244781 chr2:SNP:1666 T C 217 . DP=26;DP4=15,0,10,1;AD=15,11;TYPE=SNP;DBXREF=dbSNP:rs11690358,g1000:0.0473243,esp5400:0.06941,ExAC:0.075,clinvar:rs11690358|255,MutationTaster:0; 2 238244863 chr2:INDEL:129 TGCA T 570 . DP=63;DP4=27,8,25,3;AD=35,28;TYPE=INDEL;DBXREF=dbSNP:rs35879189,g1000:0.0511182,ExAC:0.087,clinvar:rs35879189|2; 2 238244923 chr2:SNP:1667 C T 944 . DP=89;DP4=21,19,33,16;AD=40,49;TYPE=SNP;DBXREF=dbSNP:rs11683438,g1000:0.043131,esp5400:0.07115,ExAC:0.075,clinvar:rs11683438|255; 2 238244963 chr2:SNP:1668 A G 1131 . DP=101;DP4=19,24,33,25;AD=43,58;TYPE=SNP;DBXREF=dbSNP:rs6728818,g1000:0.636581,esp5400:0.70026,ExAC:0.638,clinvar:rs6728818|2,MutationTaster:0; 2 238249108 chr2:SNP:1669 T C 900 . DP=84;DP4=35,5,35,9;AD=40,44;TYPE=SNP;DBXREF=dbSNP:rs61729844,g1000:0.0435304,esp5400:0.072411,ExAC:0.075,clinvar:rs61729844|255; 2 238253152 chr2:SNP:1670 C T 1341 . DP=136;DP4=35,32,34,35;AD=67,69;TYPE=SNP;DBXREF=dbSNP:rs34181055,g1000:0.0195687,esp5400:0.023424,ExAC:0.03,clinvar:rs34181055|255; 2 238256568 chr2:SNP:1671 A C 443 off_target DP=49;DP4=10,16,9,14;AD=26,23;TYPE=SNP;DBXREF=dbSNP:rs72986105,g1000:0.0197684,esp5400:0.028139; 2 238257127 chr2:SNP:1672 C A 325 off_target DP=29;DP4=4,9,6,10;AD=13,16;TYPE=SNP;DBXREF=dbSNP:rs3790990,g1000:0.214257; 2 238257228 chr2:SNP:1673 G A 454 off_target DP=42;DP4=7,13,8,14;AD=20,22;TYPE=SNP;DBXREF=dbSNP:rs72986111,g1000:0.0205671,esp5400:0.02361,ExAC:0.032,clinvar:rs72986111|2; 2 238269871 chr2:SNP:1674 C G 155 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2645769,g1000:0.222045,esp5400:0.203154; 2 238274828 chr2:SNP:1675 C A 113 low_coverage;off_target DP=18;DP4=0,12,0,6;AD=12,6;TYPE=SNP;DBXREF=dbSNP:rs2645770,g1000:0.221046; 2 238277573 chr2:SNP:1676 C A 1698 . DP=176;DP4=40,48,36,52;AD=88,88;TYPE=SNP;DBXREF=dbSNP:rs2645774,g1000:0.265575,esp5400:0.236661,ExAC:0.235,clinvar:rs2645774|2; 2 238277795 chr2:SNP:1677 A G 638 . DP=68;DP4=6,28,6,28;AD=34,34;TYPE=SNP;DBXREF=dbSNP:rs2646260,g1000:0.388379,esp5400:0.350995,ExAC:0.287,clinvar:rs2646260|2; 2 238280553 chr2:SNP:1678 G A 1213 . DP=137;DP4=49,24,40,24;AD=73,64;TYPE=SNP;DBXREF=dbSNP:rs35114079,g1000:0.00279553,esp5400:0.006042,ExAC:0.00542,clinvar:rs35114079|2; 2 238303906 chr2:SNP:1679 A G 221 low_coverage;off_target DP=16;DP4=0,6,1,9;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs2645778,g1000:0.392772; 2 238305660 chr2:INDEL:130 T TGATA 123 low_coverage;off_target DP=15;DP4=0,7,1,5;AD=7,6;TYPE=INDEL;DBXREF=dbSNP:rs71402725,g1000:0.785543; 2 238419611 chr2:SNP:1680 A G 320 off_target DP=35;DP4=11,7,11,6;AD=18,17;TYPE=SNP;DBXREF=dbSNP:rs2292879,g1000:0.375399,esp5400:0.343558,ExAC:0.278; 2 238434249 chr2:SNP:1681 C T 222 . DP=24;DP4=10,3,9,2;AD=13,11;TYPE=SNP;DBXREF=dbSNP:rs2292881,g1000:0.147165,esp5400:0.08747,ExAC:0.122,MutationTaster:1; 2 238443226 chr2:SNP:1682 A G 194 . DP=39;DP4=12,16,6,5;AD=28,11;TYPE=SNP;DBXREF=dbSNP:rs2292884,g1000:0.371406,esp5400:0.358803,ExAC:0.289,MutationTaster:0; 2 238449007 chr2:SNP:1683 T C 1284 . DP=100;DP4=30,8,42,20;AD=38,62;TYPE=SNP;DBXREF=dbSNP:rs3817362,g1000:0.43151,esp5400:0.333147,ExAC:0.245,MutationTaster:0; 2 238449023 chr2:SNP:1684 T C 1566 . DP=124;DP4=34,14,49,27;AD=48,76;TYPE=SNP;DBXREF=dbSNP:rs3817363,g1000:0.190695,esp5400:0.112888,ExAC:0.14,MutationTaster:0.572; 2 238449107 chr2:SNP:1685 A G 1937 . DP=134;DP4=14,29,40,51;AD=43,91;TYPE=SNP;DBXREF=dbSNP:rs2271809,g1000:0.505591,esp5400:0.436129,ExAC:0.354,MutationTaster:0; 2 239155053 chr2:SNP:1686 C T 428 . DP=34;DP4=11,3,15,5;AD=14,20;TYPE=SNP;DBXREF=dbSNP:rs934945,g1000:0.17472,esp5400:0.139617,ExAC:0.198,MutationTaster:0; 2 239161957 chr2:SNP:1687 C T 116 low_coverage DP=8;DP4=2,1,3,2;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs35333999,g1000:0.0169728,esp5400:0.032348,ExAC:0.029,MutationTaster:0; 2 239184581 chr2:SNP:1688 G A 233 off_target DP=37;DP4=8,15,7,6;AD=23,13;TYPE=SNP;DBXREF=dbSNP:rs10462023,g1000:0.225639,esp5400:0.278212,ExAC:0.314; 2 239229372 chr2:SNP:1689 C A 1159 . DP=46;DP4=0,0,25,21;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs13398676,g1000:0.665136,esp5400:0.75687,ExAC:0.671; 2 239237388 chr2:SNP:1690 G A 604 . DP=71;DP4=26,14,19,12;AD=40,31;TYPE=SNP;DBXREF=dbSNP:rs61742338,g1000:0.019369,esp5400:0.029838,ExAC:0.025,MutationTaster:0; 2 239247174 chr2:SNP:1691 A G 492 off_target DP=23;DP4=0,1,5,17;AD=1,22;TYPE=SNP;DBXREF=dbSNP:rs73090911,g1000:0.213858; 2 240003870 chr2:SNP:1692 G A 2566 . DP=102;DP4=0,0,43,59;AD=0,102;TYPE=SNP;DBXREF=dbSNP:rs1063639,g1000:0.595248,esp5400:0.511805,ExAC:0.533; 2 240024654 chr2:SNP:1693 G A 182 off_target DP=36;DP4=15,10,4,7;AD=25,11;TYPE=SNP;DBXREF=dbSNP:rs6543510,g1000:0.166134; 2 240029736 chr2:SNP:1694 T C 1599 . DP=137;DP4=39,19,45,32;AD=58,77;TYPE=SNP;DBXREF=dbSNP:rs7585225,g1000:0.838658,esp5400:0.789038,ExAC:0.831; 2 240048027 chr2:SNP:1695 C T 1115 off_target DP=43;DP4=0,0,42,1;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs2277885,g1000:0.596645; 2 240055901 chr2:SNP:1696 G A 2345 off_target DP=96;DP4=0,0,51,45;AD=0,96;TYPE=SNP;DBXREF=dbSNP:rs2278778,g1000:0.588858,esp5400:0.473405,ExAC:0.619; 2 240066033 chr2:SNP:1697 C G 208 low_coverage;off_target DP=8;DP4=0,0,7,1;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs3828211,g1000:0.690296; 2 240066417 chr2:SNP:1698 A G 10000 . DP=191;DP4=0,0,68,123;AD=0,191;TYPE=SNP;DBXREF=dbSNP:rs2290087,g1000:0.88778,esp5400:0.895241,ExAC:0.861; 2 240066526 chr2:SNP:1699 T C 1461 off_target DP=58;DP4=0,0,4,54;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs2290088,g1000:0.690296; 2 240078587 chr2:INDEL:131 GAC G 384 off_target DP=45;DP4=9,17,3,16;AD=26,19;TYPE=INDEL;DBXREF=dbSNP:rs5839723,g1000:0.492612; 2 240085403 chr2:SNP:1700 C A 252 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs11124182,g1000:0.904553; 2 240085674 chr2:SNP:1701 C T 166 off_target DP=24;DP4=1,14,0,9;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs13010577,g1000:0.469249; 2 240098072 chr2:INDEL:132 T TCCCTCCCTCTGCCCGGCCT 176 off_target DP=91;DP4=33,43,9,3;AD=76,12;TYPE=INDEL;DBXREF=dbSNP:rs771121773; 2 241528927 chr2:SNP:1702 G A 286 off_target DP=39;DP4=6,18,2,13;AD=24,15;TYPE=SNP;DBXREF=dbSNP:rs55893551,g1000:0.11881,esp5400:0.122789,ExAC:0.144; 2 241528968 chr2:SNP:1703 G C 370 off_target DP=40;DP4=4,18,2,16;AD=22,18;TYPE=SNP;DBXREF=dbSNP:rs55976923,g1000:0.11881; 2 241531479 chr2:SNP:1704 A G 885 . DP=77;DP4=10,22,26,19;AD=32,45;TYPE=SNP;DBXREF=dbSNP:rs3792269,g1000:0.117612,esp5400:0.122814,ExAC:0.143; 2 241531584 chr2:SNP:1705 G A 605 off_target DP=39;DP4=4,8,5,22;AD=12,27;TYPE=SNP;DBXREF=dbSNP:rs2975761,g1000:0.076877,esp5400:0.070283,ExAC:0.064; 2 241533512 chr2:SNP:1706 T A 380 off_target DP=36;DP4=11,6,11,8;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs17846970,g1000:0.0766773,esp5400:0.072309,ExAC:0.093; 2 241533559 chr2:SNP:1707 C T 749 off_target DP=73;DP4=19,16,23,15;AD=35,38;TYPE=SNP;DBXREF=dbSNP:rs17846971,g1000:0.053115; 2 241533845 chr2:SNP:1708 T C 260 low_coverage;off_target DP=10;DP4=0,0,7,3;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2975763,g1000:0.899161; 2 241534088 chr2:SNP:1709 C T 1182 . DP=106;DP4=22,25,24,35;AD=47,59;TYPE=SNP;DBXREF=dbSNP:rs140681762,g1000:0.000798722,esp5400:0.00093,ExAC:0.001186,MutationTaster:1; 2 241534163 chr2:SNP:1710 G A 236 off_target DP=25;DP4=3,10,4,8;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs17846975,g1000:0.116813,esp5400:0.121978,ExAC:0.143; 2 241534381 chr2:SNP:1711 A G 675 off_target DP=26;DP4=0,0,20,6;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs2975764,g1000:0.838858; 2 241536053 chr2:SNP:1712 C T 193 off_target DP=26;DP4=3,13,2,8;AD=16,10;TYPE=SNP;DBXREF=dbSNP:rs2953171,g1000:0.200479,esp5400:0.140778,ExAC:0.179; 2 241536126 chr2:SNP:1713 A G 341 . DP=25;DP4=4,5,7,9;AD=9,16;TYPE=SNP;DBXREF=dbSNP:rs7607759,g1000:0.116813,esp5400:0.11919,ExAC:0.14,MutationTaster:0; 2 241537421 chr2:SNP:1714 G A 780 . DP=78;DP4=13,24,18,23;AD=37,41;TYPE=SNP;DBXREF=dbSNP:rs3749166,g1000:0.511781,esp5400:0.51478,ExAC:0.578; 2 241537569 chr2:SNP:1715 T C 112 low_coverage;off_target DP=14;DP4=3,5,1,5;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs17846981,g1000:0.114617; 2 241537617 chr2:INDEL:133 TCC TC 112 low_coverage;off_target DP=15;DP4=1,3,5,6;AD=4,11;TYPE=INDEL;DBXREF=dbSNP:rs58715822,g1000:0.511981; 2 241538061 chr2:SNP:1716 T C 1161 . DP=129;DP4=32,35,31,30;AD=67,61;TYPE=SNP;DBXREF=dbSNP:rs55878652,g1000:0.120407,esp5400:0.116113,ExAC:0.116; 2 241538074 chr2:SNP:1717 A G 10000 . DP=133;DP4=0,0,58,75;AD=0,133;TYPE=SNP;DBXREF=dbSNP:rs2975766,g1000:0.989816,esp5400:0.97864,ExAC:0.974,MutationTaster:0.956; 2 241538229 chr2:SNP:1718 A G 404 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2975767,g1000:0.726438; 2 241659368 chr2:SNP:1719 C A 1109 off_target DP=44;DP4=0,0,5,39;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs6437368,g1000:0.820088,esp5400:0.769544,ExAC:0.765; 2 241666418 chr2:SNP:1720 G A 1199 off_target DP=134;DP4=22,47,16,49;AD=69,65;TYPE=SNP;DBXREF=dbSNP:rs2060194,g1000:0.196685; 2 241680644 chr2:SNP:1721 G C 280 off_target DP=32;DP4=13,4,11,4;AD=17,15;TYPE=SNP;DBXREF=dbSNP:rs1013225,g1000:0.227236,esp5400:0.257015,ExAC:0.179; 2 241682496 chr2:SNP:1722 C T 147 low_coverage;off_target DP=19;DP4=1,10,1,7;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs56229420,g1000:0.0131789; 2 241682597 chr2:SNP:1723 G A 106 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs28631835,g1000:0.0321486; 2 241685586 chr2:SNP:1724 G A 1289 . DP=127;DP4=23,40,24,40;AD=63,64;TYPE=SNP;DBXREF=dbSNP:rs73102625,g1000:0.0503195,esp5400:0.056447,ExAC:0.035,clinvar:rs73102625|255,MutationTaster:1; 2 241696840 chr2:INDEL:134 ATCC A 146 . DP=30;DP4=12,6,5,3;AD=18,8;TYPE=INDEL;DBXREF=dbSNP:rs10594016,ExAC:0.247; 2 241699883 chr2:SNP:1725 A G 112 low_coverage;off_target DP=14;DP4=6,2,4,2;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs3772059,g1000:0.125; 2 241702561 chr2:SNP:1726 T A 296 off_target DP=35;DP4=18,1,14,2;AD=19,16;TYPE=SNP;DBXREF=dbSNP:rs11688298,g1000:0.602436,esp5400:0.602527,ExAC:0.535; 2 241706757 chr2:SNP:1727 T C 781 . DP=71;DP4=17,15,16,23;AD=32,39;TYPE=SNP;DBXREF=dbSNP:rs35663732,g1000:0.0159744,esp5400:0.017112,ExAC:0.02,clinvar:rs35663732|255; 2 241708675 chr2:SNP:1728 C T 403 off_target DP=40;DP4=1,18,3,18;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs2288753,g1000:0.335264,esp5400:0.253237,ExAC:0.25; 2 241713429 chr2:SNP:1729 T C 119 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs2288751,g1000:0.526558; 2 241713646 chr2:SNP:1730 A G 794 . DP=75;DP4=10,25,15,25;AD=35,40;TYPE=SNP;DBXREF=dbSNP:rs1063353,g1000:0.513578,esp5400:0.451322,ExAC:0.384,clinvar:rs1063353|3,MutationTaster:1; 2 241713717 chr2:SNP:1731 T G 485 off_target DP=49;DP4=6,19,4,20;AD=25,24;TYPE=SNP;DBXREF=dbSNP:rs148957025,g1000:0.0159744,esp5400:0.017235,ExAC:0.02; 2 241722174 chr2:SNP:1732 C A 113 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs187923456,g1000:0.0161741; 2 241722613 chr2:SNP:1733 A G 361 off_target DP=34;DP4=4,12,4,14;AD=16,18;TYPE=SNP;DBXREF=dbSNP:rs2288749,g1000:0.540335; 2 241725637 chr2:SNP:1734 G A 213 low_coverage;off_target DP=18;DP4=7,1,10,0;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs74002922,g1000:0.214257; 2 241727452 chr2:SNP:1735 G C 113 low_coverage;off_target DP=7;DP4=0,2,5,0;AD=2,5;TYPE=SNP;DBXREF=dbSNP:rs7594569,ExAC:7.81e-05; 2 241813453 chr2:SNP:1736 G A 921 . DP=129;DP4=34,44,20,31;AD=78,51;TYPE=SNP;DBXREF=dbSNP:rs33958047,g1000:0.153155,esp5400:0.134226,ExAC:0.108,clinvar:rs33958047|2|0; 2 241815308 chr2:SNP:1737 A G 141 low_coverage;off_target DP=11;DP4=0,3,1,6;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs12464426,g1000:0.78135,esp5400:0.806191,ExAC:0.723,clinvar:rs12464426|0; 2 241816871 chr2:SNP:1738 G T 158 low_coverage;off_target DP=12;DP4=4,1,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs11894759,g1000:0.147764,ExAC:0.08; 2 241817176 chr2:SNP:1739 C T 261 low_coverage;off_target DP=16;DP4=1,3,2,10;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs111576306,g1000:0.177117; 2 241818279 chr2:SNP:1740 C A 238 low_coverage;off_target DP=19;DP4=2,5,1,11;AD=7,12;TYPE=SNP;DBXREF=dbSNP:rs4273214,g1000:0.252196,esp5400:0.299849,ExAC:0.261,clinvar:rs4273214|0; 2 242047742 chr2:SNP:1741 G A 341 off_target DP=32;DP4=4,11,1,16;AD=15,17;TYPE=SNP;DBXREF=dbSNP:rs147217187,g1000:0.000399361,ExAC:8.236e-05; 2 242129487 chr2:SNP:1742 G T 463 . DP=84;DP4=27,30,17,10;AD=57,27;TYPE=SNP;DBXREF=dbSNP:rs11695874,g1000:0.148762,esp5400:0.224757,ExAC:0.18; 2 242135017 chr2:SNP:1743 A C 241 low_coverage;off_target DP=18;DP4=7,0,11,0;AD=7,11;TYPE=SNP;DBXREF=dbSNP:rs12694996,g1000:0.689696; 2 242138912 chr2:SNP:1744 C T 228 off_target DP=28;DP4=4,12,3,9;AD=16,12;TYPE=SNP;DBXREF=dbSNP:rs34107209,g1000:0.0567093; 2 242139491 chr2:SNP:1745 C T 287 off_target DP=25;DP4=9,2,11,3;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs2013250,g1000:0.535743,esp5400:0.749163,ExAC:0.664; 2 242140785 chr2:SNP:1746 C G 471 off_target DP=50;DP4=11,14,16,9;AD=25,25;TYPE=SNP;DBXREF=dbSNP:rs78154103,g1000:0.132987,esp5400:0.213608,ExAC:0.204; 2 242141719 chr2:SNP:1747 C T 653 . DP=80;DP4=18,26,14,22;AD=44,36;TYPE=SNP;DBXREF=dbSNP:rs2074840,g1000:0.414736,esp5400:0.635949,ExAC:0.554; 2 242142737 chr2:SNP:1748 T C 1763 . DP=70;DP4=0,0,44,26;AD=0,70;TYPE=SNP;DBXREF=dbSNP:rs1179530,g1000:1,esp5400:0.999812,ExAC:1; 2 242149010 chr2:SNP:1749 C T 436 . DP=88;DP4=23,38,13,14;AD=61,27;TYPE=SNP;DBXREF=dbSNP:rs57677160,g1000:0.123003,esp5400:0.211006,ExAC:0.194,MutationTaster:0; 2 242149073 chr2:SNP:1750 G A 396 off_target DP=48;DP4=10,17,6,15;AD=27,21;TYPE=SNP;DBXREF=dbSNP:rs10192730,g1000:0.717452,esp5400:0.802957,ExAC:0.703; 2 242151585 chr2:SNP:1751 C T 810 . DP=111;DP4=29,36,24,22;AD=65,46;TYPE=SNP;DBXREF=dbSNP:rs7593101,g1000:0.158746,esp5400:0.237033,ExAC:0.184; 2 242151748 chr2:SNP:1752 G C 170 low_coverage;off_target DP=17;DP4=1,8,1,7;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs7566006,g1000:0.123003; 2 242157228 chr2:SNP:1753 G T 688 . DP=68;DP4=12,21,13,22;AD=33,35;TYPE=SNP;DBXREF=dbSNP:rs78605785,g1000:0.122804,esp5400:0.191927,ExAC:0.161,MutationTaster:1; 2 242163359 chr2:SNP:1754 G A 767 . DP=67;DP4=9,19,19,20;AD=28,39;TYPE=SNP;DBXREF=dbSNP:rs7590653,g1000:0.142173,esp5400:0.212028,ExAC:0.172,MutationTaster:0; 2 242179134 chr2:SNP:1755 G A 1379 . DP=117;DP4=24,23,29,39;AD=47,68;TYPE=SNP;DBXREF=dbSNP:rs10153800,g1000:0.135982,esp5400:0.218814,ExAC:0.184,MutationTaster:1; 2 242192848 chr2:SNP:1756 T C 884 . DP=114;DP4=35,31,23,25;AD=66,48;TYPE=SNP;DBXREF=dbSNP:rs7578199,g1000:0.13778,esp5400:0.224391,ExAC:0.187,MutationTaster:0; 2 242203916 chr2:SNP:1757 A C 2039 . DP=81;DP4=0,0,33,48;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs11891776,g1000:0.999601,ExAC:1,MutationTaster:0; 2 242206956 chr2:SNP:1758 C T 600 off_target DP=73;DP4=26,15,20,12;AD=41,32;TYPE=SNP;DBXREF=dbSNP:rs35334418,g1000:0.951677,ExAC:0.866; 2 242674959 chr2:SNP:1759 T G 551 off_target DP=47;DP4=6,14,10,17;AD=20,27;TYPE=SNP;DBXREF=dbSNP:rs62191977,g1000:0.742412,esp5400:0.727382,ExAC:0.675,clinvar:rs62191977|3; 2 242695381 chr2:SNP:1760 G A 741 . DP=116;DP4=39,35,17,25;AD=74,42;TYPE=SNP;DBXREF=dbSNP:rs149504235,g1000:0.00319489,esp5400:0.002326,ExAC:0.002176,clinvar:rs149504235|0,MutationTaster:0; 2 242707101 chr2:SNP:1761 A G 939 off_target DP=73;DP4=20,9,28,16;AD=29,44;TYPE=SNP;DBXREF=dbSNP:rs6756901,g1000:0.629992,esp5400:0.618107,ExAC:0.527,clinvar:rs6756901|3; 2 242707477 chr2:SNP:1762 T C 186 low_coverage;off_target DP=11;DP4=1,2,1,7;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs11552660,g1000:0.0621006; 2 242793273 chr2:SNP:1763 A G 282 . DP=41;DP4=11,14,7,9;AD=25,16;TYPE=SNP;DBXREF=dbSNP:rs2227981,g1000:0.647963,esp5400:0.588602,ExAC:0.625; 2 242793912 chr2:SNP:1764 C T 197 off_target DP=24;DP4=12,2,9,1;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs11568821,g1000:0.0409345,clinvar:rs11568821|; 3 383936 chr3:SNP:1 T C 271 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs9877555,g1000:0.990016; 3 386149 chr3:INDEL:1 A AACAC 165 off_target DP=24;DP4=10,0,8,0;AD=10,8;TYPE=INDEL;DBXREF=dbSNP:rs67691869; 3 386520 chr3:SNP:2 C T 290 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1499046,g1000:0.522165; 3 391100 chr3:SNP:3 A G 2338 . DP=98;DP4=0,0,54,42;AD=0,96;TYPE=SNP;DBXREF=dbSNP:rs13060847,g1000:0.851038,esp5400:0.83575,ExAC:0.955,MutationTaster:0; 3 403288 chr3:SNP:4 G A 159 low_coverage;off_target DP=11;DP4=4,0,7,0;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs9824311,g1000:0.554912; 3 403297 chr3:SNP:5 C A 229 low_coverage;off_target DP=15;DP4=5,0,8,2;AD=5,10;TYPE=SNP;DBXREF=dbSNP:rs9839027,g1000:0.557907; 3 403308 chr3:SNP:6 G A 417 off_target DP=20;DP4=2,1,13,4;AD=3,17;TYPE=SNP;DBXREF=dbSNP:rs9824442,g1000:0.557308; 3 403345 chr3:SNP:7 A G 632 off_target DP=24;DP4=0,0,14,10;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs9846775,g1000:0.972244,esp5400:0.96663,ExAC:0.991; 3 404771 chr3:SNP:8 C T 209 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs4684390,g1000:0.882987; 3 405202 chr3:SNP:9 A T 894 off_target DP=33;DP4=0,0,0,33;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2387180,g1000:0.977436; 3 439963 chr3:SNP:10 A G 3201 . DP=122;DP4=0,0,74,48;AD=0,122;TYPE=SNP;DBXREF=dbSNP:rs6442827,g1000:0.958466,esp5400:0.960959,ExAC:0.988,MutationTaster:0; 3 440028 chr3:SNP:11 T C 10000 . DP=146;DP4=0,0,69,77;AD=0,146;TYPE=SNP;DBXREF=dbSNP:rs6771714,g1000:0.96885,esp5400:0.9723,ExAC:0.992; 3 440088 chr3:SNP:12 T A 2244 off_target DP=83;DP4=0,0,16,67;AD=0,83;TYPE=SNP;DBXREF=dbSNP:rs6771803,g1000:0.96905,esp5400:0.972393,ExAC:0.992; 3 440946 chr3:SNP:13 G A 434 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2387184,g1000:0.972045; 3 447069 chr3:SNP:14 C T 894 off_target DP=33;DP4=0,0,33,0;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs11705894,g1000:0.886382; 3 2787532 chr3:SNP:15 A G 658 off_target DP=25;DP4=0,0,5,20;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs4685547,g1000:0.839856; 3 2908335 chr3:SNP:16 A G 316 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6442761,g1000:0.788139; 3 2908694 chr3:SNP:17 A G 174 low_coverage;off_target DP=9;DP4=0,2,0,7;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs6789163,g1000:0.446286; 3 2924686 chr3:SNP:18 G A 197 low_coverage;off_target DP=16;DP4=7,0,9,0;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs4685575,g1000:0.611422; 3 3068127 chr3:SNP:19 C G 475 off_target DP=34;DP4=0,12,1,21;AD=12,22;TYPE=SNP;DBXREF=dbSNP:rs7618862,g1000:0.492812; 3 3068148 chr3:SNP:20 C T 101 low_coverage;off_target DP=11;DP4=0,6,1,4;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs13084872,g1000:0.241414; 3 3076218 chr3:SNP:21 G A 234 off_target DP=39;DP4=18,8,7,6;AD=26,13;TYPE=SNP;DBXREF=dbSNP:rs9845519,g1000:0.363019; 3 3076284 chr3:SNP:22 G C 570 off_target DP=93;DP4=38,24,22,9;AD=62,31;TYPE=SNP;DBXREF=dbSNP:rs6765545,g1000:0.378794,esp5400:0.437349,ExAC:0.417; 3 3076401 chr3:SNP:23 C T 1015 . DP=113;DP4=27,35,26,25;AD=62,51;TYPE=SNP;DBXREF=dbSNP:rs6790908,g1000:0.428315,esp5400:0.525376,ExAC:0.477; 3 3076443 chr3:SNP:24 A G 1151 . DP=141;DP4=33,47,23,38;AD=80,61;TYPE=SNP;DBXREF=dbSNP:rs6803232,g1000:0.560304,esp5400:0.656999,ExAC:0.588; 3 3080452 chr3:SNP:25 G A 158 low_coverage;off_target DP=18;DP4=10,0,8,0;AD=10,8;TYPE=SNP;DBXREF=dbSNP:rs7625369,g1000:0.095647; 3 3080527 chr3:SNP:26 C T 2082 off_target DP=77;DP4=0,0,62,15;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs163543,g1000:0.980431; 3 3080611 chr3:SNP:27 G C 1471 . DP=135;DP4=29,33,38,35;AD=62,73;TYPE=SNP;DBXREF=dbSNP:rs10510251,g1000:0.0339457,esp5400:0.062093,ExAC:0.061; 3 3081750 chr3:SNP:28 A T 279 . DP=29;DP4=11,4,11,3;AD=15,14;TYPE=SNP;DBXREF=dbSNP:rs6802588,g1000:0.364816,esp5400:0.307957,ExAC:0.405; 3 3081825 chr3:SNP:29 T C 2321 . DP=91;DP4=0,0,46,45;AD=0,91;TYPE=SNP;DBXREF=dbSNP:rs339285,g1000:0.896565,esp5400:0.929262,ExAC:0.897; 3 3081959 chr3:SNP:30 T C 493 . DP=41;DP4=5,13,8,15;AD=18,23;TYPE=SNP;DBXREF=dbSNP:rs339284,g1000:0.121605,esp5400:0.15765,ExAC:0.092; 3 3082003 chr3:SNP:31 T A 231 off_target DP=22;DP4=4,7,0,11;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs339283,g1000:0.179712,esp5400:0.192043,ExAC:0.136; 3 3084147 chr3:SNP:32 A G 152 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs163560,g1000:0.228235,esp5400:0.244004,ExAC:0.155; 3 3095404 chr3:SNP:33 G A 759 off_target DP=50;DP4=13,5,19,13;AD=18,32;TYPE=SNP;DBXREF=dbSNP:rs163573,g1000:0.147564; 3 3197871 chr3:SNP:34 T C 894 off_target DP=35;DP4=0,0,31,4;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs1705789,g1000:0.904553,esp5400:0.902491,ExAC:0.973; 3 3209655 chr3:SNP:35 A T 264 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1672761,g1000:0.511382; 3 3214772 chr3:SNP:36 C T 223 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs1619281,g1000:0.378395; 3 3215954 chr3:SNP:37 A G 1047 . DP=41;DP4=0,0,2,39;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs1669321,g1000:0.883786,esp5400:0.879532,ExAC:0.967,clinvar:rs1669321|2; 3 3217035 chr3:SNP:38 G A 225 low_coverage;off_target DP=18;DP4=0,8,0,10;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs75631454,g1000:0.0457268; 3 3221430 chr3:SNP:39 C T 920 off_target DP=36;DP4=0,0,13,23;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs1672753,g1000:0.721046,esp5400:0.753247; 3 3221573 chr3:INDEL:2 G GAACGCC 356 low_coverage;off_target DP=18;DP4=0,3,0,14;AD=3,14;TYPE=INDEL;DBXREF=dbSNP:rs71058683,g1000:0.401957; 3 4403767 chr3:SNP:40 A G 197 low_coverage;off_target DP=18;DP4=8,1,8,1;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs2819561,g1000:0.704473; 3 4403817 chr3:SNP:41 T A 650 . DP=44;DP4=11,4,18,11;AD=15,29;TYPE=SNP;DBXREF=dbSNP:rs2633851,g1000:0.726837,esp5400:0.599554,ExAC:0.633,clinvar:rs2633851|2; 3 4403818 chr3:SNP:42 T C 546 . DP=47;DP4=15,7,16,9;AD=22,25;TYPE=SNP;DBXREF=dbSNP:rs35083095,g1000:0.432109,esp5400:0.373582,ExAC:0.494,clinvar:rs35083095|2; 3 4403837 chr3:SNP:43 A G 662 . DP=55;DP4=13,11,19,12;AD=24,31;TYPE=SNP;DBXREF=dbSNP:rs2633852,g1000:0.760383,esp5400:0.654583,ExAC:0.644,clinvar:rs2633852|2; 3 4452737 chr3:SNP:44 G A 649 off_target DP=59;DP4=11,17,14,17;AD=28,31;TYPE=SNP;DBXREF=dbSNP:rs813811,g1000:0.579673; 3 4461698 chr3:SNP:45 C T 553 off_target DP=21;DP4=0,0,13,8;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs711666,g1000:0.886781,esp5400:0.895799,ExAC:0.961,clinvar:rs711666|2; 3 4562667 chr3:SNP:46 T G 1089 off_target DP=75;DP4=15,11,31,18;AD=26,49;TYPE=SNP;DBXREF=dbSNP:rs1038639,g1000:0.491414,esp5400:0.43924,ExAC:0.552; 3 4687470 chr3:INDEL:3 G GCT 165 off_target DP=24;DP4=0,15,0,8;AD=15,8;TYPE=INDEL;DBXREF=dbSNP:rs5846330,ExAC:0.751; 3 4693656 chr3:SNP:47 C T 298 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6442894,g1000:0.970847; 3 4693937 chr3:SNP:48 G C 1919 off_target DP=73;DP4=0,0,31,42;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs6442895,g1000:0.826877,esp5400:0.759802,ExAC:0.856; 3 4694010 chr3:SNP:49 A C 383 low_coverage;off_target DP=15;DP4=0,0,4,11;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs6442896,g1000:0.857628; 3 4694068 chr3:SNP:50 C G 358 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6442897,g1000:0.858427; 3 4695680 chr3:SNP:51 G A 676 off_target DP=59;DP4=8,19,8,24;AD=27,32;TYPE=SNP;DBXREF=dbSNP:rs13316843,g1000:0.105631; 3 4712234 chr3:SNP:52 G A 248 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs1994500,g1000:0.417332; 3 4712413 chr3:SNP:53 G A 1939 . DP=76;DP4=0,0,43,33;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs2306875,g1000:0.614018,esp5400:0.683194,ExAC:0.619,clinvar:rs2306875|3; 3 4712710 chr3:SNP:54 A T 537 off_target DP=21;DP4=0,0,6,15;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2306876,g1000:0.611222; 3 4716672 chr3:SNP:55 T C 183 low_coverage;off_target DP=16;DP4=7,0,9,0;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs13082052,g1000:0.058107; 3 4725619 chr3:INDEL:4 CAA CA 207 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=INDEL;DBXREF=dbSNP:rs3215005,g1000:0.713059; 3 4738774 chr3:SNP:56 A G 241 low_coverage;off_target DP=19;DP4=7,1,11,0;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs3749382,g1000:0.277556; 3 4767262 chr3:SNP:57 T C 1328 . DP=52;DP4=0,0,25,27;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs7613447,g1000:0.512181,esp5400:0.709974,ExAC:0.687; 3 4817057 chr3:SNP:58 T C 1683 . DP=64;DP4=0,0,29,35;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs6442905,g1000:0.96266,esp5400:0.965643,ExAC:0.97; 3 4829732 chr3:SNP:59 A G 184 . DP=43;DP4=16,16,8,3;AD=32,11;TYPE=SNP;DBXREF=dbSNP:rs13079522,g1000:0.245607,esp5400:0.302911,ExAC:0.302,clinvar:rs13079522|3; 3 4842231 chr3:SNP:60 C T 685 . DP=93;DP4=20,35,21,16;AD=55,37;TYPE=SNP;DBXREF=dbSNP:rs2291862,g1000:0.264577,esp5400:0.229795,ExAC:0.287,clinvar:rs2291862|3; 3 4856180 chr3:SNP:61 T C 1079 . DP=41;DP4=0,0,21,20;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs711631,g1000:0.790935,esp5400:0.80345,ExAC:0.824,clinvar:rs711631|3; 3 4856234 chr3:SNP:62 G A 136 low_coverage DP=5;DP4=0,0,1,4;AD=0,5;TYPE=SNP;DBXREF=dbSNP:rs901854,g1000:0.58746,esp5400:0.595942,ExAC:0.604,clinvar:rs901854|3; 3 4859725 chr3:SNP:63 G A 347 low_coverage;off_target DP=14;DP4=0,0,10,4;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs9844268,g1000:0.94988,esp5400:0.950808,ExAC:0.985; 3 4878335 chr3:SNP:64 T C 409 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2270747,g1000:0.764776; 3 6903297 chr3:SNP:65 C T 1633 . DP=114;DP4=20,22,39,33;AD=42,72;TYPE=SNP;DBXREF=dbSNP:rs3749380,g1000:0.416933,esp5400:0.357873,ExAC:0.401; 3 6903601 chr3:SNP:66 A G 1821 . DP=69;DP4=0,1,15,53;AD=1,68;TYPE=SNP;DBXREF=dbSNP:rs342034,g1000:0.984824,esp5400:0.964956,ExAC:0.968; 3 7456675 chr3:SNP:67 C T 223 low_coverage;off_target DP=8;DP4=0,0,6,2;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs712774,g1000:0.701478,esp5400:0.777798,ExAC:0.693; 3 7503581 chr3:SNP:68 C T 335 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs3817365,g1000:0.120407; 3 7620168 chr3:SNP:69 A G 930 . DP=97;DP4=27,24,32,14;AD=51,46;TYPE=SNP;DBXREF=dbSNP:rs34373930,g1000:0.170527,esp5400:0.210169,ExAC:0.251; 3 7620382 chr3:SNP:70 C T 1806 . DP=141;DP4=27,29,41,43;AD=56,84;TYPE=SNP;DBXREF=dbSNP:rs7614915,g1000:0.170327,esp5400:0.210262,ExAC:0.25; 3 7620789 chr3:SNP:71 T C 1143 . DP=105;DP4=24,26,26,29;AD=50,55;TYPE=SNP;DBXREF=dbSNP:rs1485175,g1000:0.525559,esp5400:0.563023,ExAC:0.547; 3 7620828 chr3:SNP:72 G A 1061 . DP=97;DP4=20,26,33,18;AD=46,51;TYPE=SNP;DBXREF=dbSNP:rs1485174,g1000:0.170727,esp5400:0.209426,ExAC:0.251; 3 7621093 chr3:SNP:73 T A 1193 off_target DP=84;DP4=9,21,17,37;AD=30,54;TYPE=SNP;DBXREF=dbSNP:rs1485173,g1000:0.170327,esp5400:0.199268,ExAC:0.205; 3 7621158 chr3:SNP:74 T C 507 off_target DP=42;DP4=0,19,0,23;AD=19,23;TYPE=SNP;DBXREF=dbSNP:rs1485172,g1000:0.503594; 3 7721613 chr3:SNP:75 T C 307 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs162802,g1000:0.328075; 3 8775661 chr3:SNP:76 C T 689 . DP=93;DP4=23,34,13,23;AD=57,36;TYPE=SNP;DBXREF=dbSNP:rs1008642,g1000:0.371006,esp5400:0.345882,ExAC:0.298,clinvar:rs1008642|1|255|2; 3 8787330 chr3:SNP:77 C T 465 . DP=44;DP4=15,6,17,6;AD=21,23;TYPE=SNP;DBXREF=dbSNP:rs72546668,g1000:0.00199681,esp5400:0.004276,ExAC:0.003031,clinvar:rs72546668|5|5|0|255|255|3,MutationTaster:0.999; 3 8809703 chr3:SNP:78 G A 347 low_coverage DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2228485,g1000:0.717851,esp5400:0.722554,ExAC:0.73; 3 9034558 chr3:SNP:79 C T 867 off_target DP=98;DP4=37,16,31,14;AD=53,45;TYPE=SNP;DBXREF=dbSNP:rs511815,g1000:0.654752,esp5400:0.676892,ExAC:0.58; 3 9036010 chr3:SNP:80 T G 481 off_target DP=51;DP4=20,8,19,4;AD=28,23;TYPE=SNP;DBXREF=dbSNP:rs637172,g1000:0.583267,esp5400:0.598624,ExAC:0.561; 3 9068577 chr3:SNP:81 T C 687 off_target DP=64;DP4=18,10,24,10;AD=28,34;TYPE=SNP;DBXREF=dbSNP:rs1703128,g1000:0.243011,esp5400:0.190742,ExAC:0.219; 3 9068858 chr3:SNP:82 A G 113 low_coverage;off_target DP=17;DP4=0,11,0,6;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs1703127,g1000:0.199481; 3 9069747 chr3:SNP:83 A G 408 off_target DP=34;DP4=9,6,14,5;AD=15,19;TYPE=SNP;DBXREF=dbSNP:rs416685,g1000:0.834265,esp5400:0.820041,ExAC:0.775; 3 9069918 chr3:SNP:84 C T 214 low_coverage;off_target DP=19;DP4=2,7,3,7;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs504153,g1000:0.14397; 3 9089254 chr3:SNP:85 C G 253 off_target DP=27;DP4=4,11,2,10;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs2244864,g1000:0.780751; 3 9102137 chr3:SNP:86 G C 542 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs6775479,g1000:0.586661; 3 9798140 chr3:SNP:87 C G 288 low_coverage;off_target DP=19;DP4=5,1,10,3;AD=6,13;TYPE=SNP;DBXREF=dbSNP:rs2072668,g1000:0.335463,esp5400:0.248745,ExAC:0.281; 3 9798773 chr3:SNP:88 C G 835 . DP=77;DP4=25,13,23,16;AD=38,39;TYPE=SNP;DBXREF=dbSNP:rs1052133,g1000:0.302117,esp5400:0.214724,ExAC:0.271,MutationTaster:0; 3 9801080 chr3:SNP:89 G A 161 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs2304277,g1000:0.352037; 3 9908935 chr3:SNP:90 G A 1796 . DP=171;DP4=38,48,38,47;AD=86,85;TYPE=SNP;DBXREF=dbSNP:rs17222536,g1000:0.0325479,esp5400:0.073155,ExAC:0.078,clinvar:rs17222536|3,MutationTaster:1; 3 9918861 chr3:SNP:91 C A 974 . DP=85;DP4=19,21,17,28;AD=40,45;TYPE=SNP;DBXREF=dbSNP:rs456168,g1000:0.313299,esp5400:0.269506,ExAC:0.141,clinvar:rs456168|3; 3 9976159 chr3:SNP:92 A G 2245 . DP=88;DP4=0,0,62,26;AD=0,88;TYPE=SNP;DBXREF=dbSNP:rs279552,g1000:0.995607,esp5400:0.992006,ExAC:0.992,clinvar:rs279552|,MutationTaster:0; 3 9979660 chr3:SNP:93 A G 249 off_target DP=25;DP4=11,1,10,2;AD=12,12;TYPE=SNP;DBXREF=dbSNP:rs2302786,g1000:0.404752,esp5400:0.434245,ExAC:0.285; 3 9985656 chr3:SNP:94 C T 574 . DP=59;DP4=21,9,15,14;AD=30,29;TYPE=SNP;DBXREF=dbSNP:rs3774207,g1000:0.379992,esp5400:0.408068,ExAC:0.278,clinvar:rs3774207|2; 3 10075983 chr3:SNP:95 T C 130 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs113771705,g1000:0.182109; 3 10077955 chr3:SNP:96 A G 496 off_target DP=60;DP4=18,16,15,11;AD=34,26;TYPE=SNP;DBXREF=dbSNP:rs17032278,g1000:0.182109,esp5400:0.218948,ExAC:0.166,clinvar:rs17032278|2; 3 10081545 chr3:SNP:97 G C 244 off_target DP=31;DP4=8,11,3,9;AD=19,12;TYPE=SNP;DBXREF=dbSNP:rs17032283,g1000:0.182109,esp5400:0.217606,ExAC:0.166,clinvar:rs17032283|2; 3 10083169 chr3:SNP:98 C T 153 low_coverage;off_target DP=9;DP4=2,0,7,0;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs35220123,g1000:0.182109; 3 10084224 chr3:SNP:99 C T 494 off_target DP=46;DP4=12,11,12,11;AD=23,23;TYPE=SNP;DBXREF=dbSNP:rs9879080,g1000:0.210663,esp5400:0.253858,ExAC:0.174,clinvar:rs9879080|2; 3 10085035 chr3:SNP:100 G T 664 off_target DP=26;DP4=0,0,23,3;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs803335,g1000:0.952476; 3 10085130 chr3:SNP:101 C G 758 off_target DP=59;DP4=18,5,29,7;AD=23,36;TYPE=SNP;DBXREF=dbSNP:rs9809061,g1000:0.211661,esp5400:0.242526,ExAC:0.172,clinvar:rs9809061|2; 3 10085406 chr3:SNP:102 G T 188 low_variant_fraction;off_target DP=80;DP4=21,46,10,3;AD=67,13;TYPE=SNP;DBXREF=dbSNP:rs56350437; 3 10085536 chr3:SNP:103 A G 526 . DP=123;DP4=41,51,10,21;AD=92,31;TYPE=SNP;DBXREF=dbSNP:rs34046352,esp5400:0.103981,clinvar:rs34046352|2; 3 10088266 chr3:SNP:104 G T 113 . DP=23;DP4=9,8,1,5;AD=17,6;TYPE=SNP;DBXREF=dbSNP:rs72492997,esp5400:0.083845; 3 10088308 chr3:SNP:105 T C 104 low_variant_fraction DP=31;DP4=14,11,1,5;AD=25,6;TYPE=SNP;DBXREF=dbSNP:rs72492998,esp5400:0.192229; 3 10091035 chr3:SNP:106 T C 122 low_coverage;off_target DP=17;DP4=10,1,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs10222446,g1000:0.439696,esp5400:0.230144,ExAC:0.217,clinvar:rs10222446|2; 3 10091153 chr3:SNP:107 C T 166 low_variant_fraction DP=72;DP4=36,25,7,4;AD=61,11;TYPE=SNP;DBXREF=dbSNP:rs6785756,esp5400:0.011353,ExAC:0.014,clinvar:rs6785756|2; 3 10091252 chr3:SNP:108 A C 186 off_target DP=32;DP4=6,16,1,9;AD=22,10;TYPE=SNP;DBXREF=dbSNP:rs77076948; 3 10091261 chr3:SNP:109 G A 166 off_target DP=30;DP4=5,16,1,8;AD=21,9;TYPE=SNP;DBXREF=dbSNP:rs80128604; 3 10102377 chr3:SNP:110 T A 194 low_coverage;off_target DP=10;DP4=0,2,0,8;AD=2,8;TYPE=SNP;DBXREF=dbSNP:rs722509,g1000:0.180312; 3 10105665 chr3:SNP:111 C G 113 low_variant_fraction;off_target DP=67;DP4=12,47,1,7;AD=59,8;TYPE=SNP; 3 10106144 chr3:SNP:112 C T 546 off_target DP=60;DP4=10,22,8,20;AD=32,28;TYPE=SNP;DBXREF=dbSNP:rs3864015,clinvar:rs3864015|3; 3 10106213 chr3:SNP:113 A G 177 off_target DP=27;DP4=3,15,1,8;AD=18,9;TYPE=SNP;DBXREF=dbSNP:rs62245515; 3 10106532 chr3:SNP:114 C T 319 . DP=28;DP4=5,8,9,6;AD=13,15;TYPE=SNP;DBXREF=dbSNP:rs3864017,esp5400:0.142127,clinvar:rs3864017|2,MutationTaster:0; 3 10107520 chr3:SNP:115 G T 167 low_coverage;off_target DP=17;DP4=8,1,5,3;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs34608006,g1000:0.175319,esp5400:0.212068,ExAC:0.163,clinvar:rs34608006|2; 3 10114802 chr3:SNP:116 T C 124 low_coverage;off_target DP=16;DP4=6,4,1,5;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs9824585,g1000:0.219848; 3 10122575 chr3:SNP:117 T C 182 low_coverage;off_target DP=11;DP4=3,0,8,0;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs6442150,g1000:0.180511; 3 10133949 chr3:SNP:118 A G 415 off_target DP=50;DP4=8,21,9,12;AD=29,21;TYPE=SNP;DBXREF=dbSNP:rs9811771,g1000:0.254193,esp5400:0.275888,ExAC:0.192,clinvar:rs9811771|2; 3 10136150 chr3:SNP:119 C T 260 off_target DP=28;DP4=5,9,4,10;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs7610821,g1000:0.241214; 3 10138069 chr3:SNP:120 T G 285 . DP=25;DP4=6,6,5,8;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs2272125,g1000:0.242212,esp5400:0.269753,ExAC:0.187,clinvar:rs2272125|2; 3 10140671 chr3:SNP:121 G A 375 off_target DP=47;DP4=8,21,1,17;AD=29,18;TYPE=SNP;DBXREF=dbSNP:rs7626117,g1000:0.345248,esp5400:0.375883,ExAC:0.228; 3 10140696 chr3:SNP:122 A G 391 off_target DP=35;DP4=6,11,1,17;AD=17,18;TYPE=SNP;DBXREF=dbSNP:rs7647987,g1000:0.241214; 3 10188428 chr3:SNP:123 T G 298 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1678607,g1000:0.849042; 3 10379923 chr3:SNP:124 C T 481 . DP=54;DP4=19,11,17,7;AD=30,24;TYPE=SNP;DBXREF=dbSNP:rs35678,g1000:0.567891,esp5400:0.454267,ExAC:0.487; 3 10381784 chr3:SNP:125 A G 392 off_target DP=27;DP4=10,0,17,0;AD=10,17;TYPE=SNP;DBXREF=dbSNP:rs154243,g1000:0.819888; 3 10382111 chr3:SNP:126 T C 477 off_target DP=31;DP4=3,7,8,13;AD=10,21;TYPE=SNP;DBXREF=dbSNP:rs171337,g1000:0.758986; 3 10382148 chr3:SNP:127 G A 346 off_target DP=37;DP4=7,13,5,12;AD=20,17;TYPE=SNP;DBXREF=dbSNP:rs154242,g1000:0.758586,esp5400:0.614241,ExAC:0.662; 3 10400643 chr3:SNP:128 G A 123 low_coverage;off_target DP=18;DP4=2,9,0,7;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs28113,g1000:0.677316,esp5400:0.493864,ExAC:0.631; 3 10400648 chr3:SNP:129 T A 149 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP; 3 10413526 chr3:SNP:130 G A 407 . DP=39;DP4=14,6,12,7;AD=20,19;TYPE=SNP;DBXREF=dbSNP:rs2289272,g1000:0.0435304,esp5400:0.028537,ExAC:0.038; 3 10420087 chr3:SNP:131 T C 120 . DP=21;DP4=3,12,1,5;AD=15,6;TYPE=SNP;DBXREF=dbSNP:rs751122,g1000:0.493211,esp5400:0.358152,ExAC:0.408; 3 10420875 chr3:SNP:132 G A 582 off_target DP=55;DP4=21,6,21,7;AD=27,28;TYPE=SNP;DBXREF=dbSNP:rs4684686,g1000:0.410343,esp5400:0.295344; 3 10421107 chr3:SNP:133 A G 101 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs7616000,g1000:0.36262; 3 10442779 chr3:SNP:134 C T 170 low_coverage;off_target DP=14;DP4=2,4,3,5;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs26797,g1000:0.0930511,esp5400:0.200316,ExAC:0.197; 3 10885787 chr3:SNP:135 G A 200 low_coverage;off_target DP=15;DP4=6,0,9,0;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs2304724,g1000:0.193091; 3 10885920 chr3:SNP:136 T C 964 . DP=78;DP4=23,10,27,18;AD=33,45;TYPE=SNP;DBXREF=dbSNP:rs2304725,g1000:0.374201,esp5400:0.327942,ExAC:0.348; 3 10975745 chr3:SNP:137 C T 625 . DP=58;DP4=14,14,16,14;AD=28,30;TYPE=SNP;DBXREF=dbSNP:rs2272399,g1000:0.350839,esp5400:0.295687,ExAC:0.334; 3 10976876 chr3:SNP:138 A G 1362 . DP=110;DP4=17,31,27,35;AD=48,62;TYPE=SNP;DBXREF=dbSNP:rs2245532,g1000:0.334864,esp5400:0.445715,ExAC:0.359; 3 11075503 chr3:SNP:139 T C 282 off_target DP=23;DP4=2,8,2,11;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs2246543,g1000:0.698283; 3 11076400 chr3:SNP:140 C G 357 off_target DP=33;DP4=5,11,5,12;AD=16,17;TYPE=SNP;DBXREF=dbSNP:rs35957531,g1000:0.048123,esp5400:0.117866,ExAC:0.109; 3 12447814 chr3:SNP:141 C G 281 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1797895,g1000:1; 3 12475557 chr3:SNP:142 C T 646 . DP=79;DP4=22,24,8,25;AD=46,33;TYPE=SNP;DBXREF=dbSNP:rs3856806,g1000:0.126597,esp5400:0.105224,ExAC:0.134,clinvar:rs3856806|2|3; 3 12531421 chr3:SNP:143 G A 524 . DP=69;DP4=24,17,10,18;AD=41,28;TYPE=SNP;DBXREF=dbSNP:rs12495784,g1000:0.0938498,esp5400:0.065161,ExAC:0.038,clinvar:rs12495784|2,MutationTaster:0; 3 12531461 chr3:SNP:144 G A 453 . DP=55;DP4=15,17,7,16;AD=32,23;TYPE=SNP;DBXREF=dbSNP:rs78685815,g1000:0.0934505,esp5400:0.065161,ExAC:0.038,clinvar:rs78685815|2; 3 12533505 chr3:SNP:145 C A 148 low_coverage;off_target DP=19;DP4=12,0,7,0;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs74685105,g1000:0.0449281; 3 12533753 chr3:INDEL:5 TAA TA 156 off_target DP=43;DP4=2,19,6,15;AD=21,21;TYPE=INDEL;DBXREF=dbSNP:rs144898008,g1000:0.0449281,ExAC:0.025,clinvar:rs886038697|3; 3 12537924 chr3:SNP:146 T C 326 off_target DP=44;DP4=20,6,13,5;AD=26,18;TYPE=SNP;DBXREF=dbSNP:rs17036841,g1000:0.0441294; 3 12538111 chr3:SNP:147 A G 204 off_target DP=26;DP4=1,15,0,10;AD=16,10;TYPE=SNP;DBXREF=dbSNP:rs41293387,g1000:0.033746,esp5400:0.012678; 3 12544779 chr3:SNP:148 G A 788 . DP=93;DP4=35,18,29,11;AD=53,40;TYPE=SNP;DBXREF=dbSNP:rs77899976,g1000:0.0447284,esp5400:0.019427,ExAC:0.025,clinvar:rs77899976|2; 3 12545091 chr3:SNP:149 T C 724 . DP=69;DP4=9,25,12,23;AD=34,35;TYPE=SNP;DBXREF=dbSNP:rs3796329,g1000:0.0447284,esp5400:0.019427,ExAC:0.025,clinvar:rs3796329|2; 3 12558068 chr3:SNP:150 A G 552 off_target DP=40;DP4=12,3,12,13;AD=15,25;TYPE=SNP;DBXREF=dbSNP:rs12491241,g1000:0.0289537,esp5400:0.012089,ExAC:0.019; 3 12560560 chr3:SNP:151 G A 547 . DP=58;DP4=18,13,12,15;AD=31,27;TYPE=SNP;DBXREF=dbSNP:rs17036879,g1000:0.0375399,esp5400:0.012363,ExAC:0.023,clinvar:rs17036879|2; 3 12574137 chr3:SNP:152 G T 988 off_target DP=95;DP4=28,19,29,19;AD=47,48;TYPE=SNP;DBXREF=dbSNP:rs79692336,g1000:0.0231629,esp5400:0.010225,ExAC:0.016; 3 12626516 chr3:SNP:153 G A 409 low_coverage;off_target DP=17;DP4=0,1,8,8;AD=1,16;TYPE=SNP;DBXREF=dbSNP:rs3729931,g1000:0.364617,esp5400:0.439487,ExAC:0.35,clinvar:rs3729931|2; 3 12633168 chr3:SNP:154 A G 164 low_coverage;off_target DP=10;DP4=3,0,7,0;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs2290161,g1000:0.0213658,esp5400:0.009667,ExAC:0.016,clinvar:rs2290161|2; 3 12641518 chr3:SNP:155 A G 435 low_coverage;off_target DP=17;DP4=0,0,14,3;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2246390,g1000:0.538538; 3 12650482 chr3:SNP:156 T A 1210 off_target DP=46;DP4=0,0,16,30;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs2454440,g1000:1; 3 12660291 chr3:SNP:157 C T 207 low_coverage;off_target DP=9;DP4=0,1,0,8;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs3729926,g1000:0.91254; 3 13916407 chr3:SNP:158 G T 763 off_target DP=29;DP4=0,0,28,1;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs3749319,g1000:0.538139,esp5400:0.478269,ExAC:0.557; 3 14172974 chr3:SNP:159 C T 816 off_target DP=31;DP4=0,0,31,0;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs3964375,g1000:0.0505192; 3 14173963 chr3:SNP:160 G T 298 low_coverage;off_target DP=11;DP4=0,0,6,5;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4685074,g1000:0.45627; 3 14174146 chr3:SNP:161 T C 298 low_coverage;off_target DP=12;DP4=0,0,7,5;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs4685075,g1000:0.557308,esp5400:0.464106,ExAC:0.469; 3 14174427 chr3:SNP:162 A T 1761 . DP=67;DP4=0,0,31,36;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs4685076,g1000:0.352636,esp5400:0.286949,ExAC:0.321,clinvar:rs4685076|2|2,MutationTaster:0.983; 3 14175262 chr3:SNP:163 T C 869 . DP=34;DP4=0,0,17,17;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs2340917,g1000:0.463259,esp5400:0.334635,ExAC:0.372,clinvar:rs2340917|2|2,MutationTaster:0.001; 3 14176446 chr3:SNP:164 G A 1435 off_target DP=53;DP4=0,0,18,35;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs6766740,g1000:0.350839; 3 14177194 chr3:SNP:165 T C 369 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2607765,g1000:0.745807; 3 14177251 chr3:SNP:166 G A 606 off_target DP=23;DP4=0,0,17,6;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs3796311,g1000:0.201877; 3 14180552 chr3:SNP:167 A G 1302 off_target DP=51;DP4=0,0,33,18;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs2607767,g1000:0.707268; 3 14186757 chr3:SNP:168 C G 684 . DP=26;DP4=0,0,22,4;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs1126547,g1000:0.91893,ExAC:0.883; 3 14187449 chr3:SNP:169 G T 767 . DP=30;DP4=0,0,28,2;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2228001,g1000:0.684704,esp5400:0.642579,ExAC:0.631,clinvar:rs2228001|2|6,MutationTaster:0; 3 14187699 chr3:SNP:170 T C 816 off_target DP=31;DP4=0,0,9,22;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2733532,g1000:0.694289,esp5400:0.655982,ExAC:0.596,clinvar:rs2733532|2; 3 14187710 chr3:SNP:171 T C 553 off_target DP=21;DP4=0,0,5,16;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs3731175,g1000:0.247204,esp5400:0.265067; 3 14188700 chr3:SNP:172 C A 1525 off_target DP=58;DP4=0,1,45,12;AD=1,57;TYPE=SNP;DBXREF=dbSNP:rs2733533,g1000:0.328874; 3 14188762 chr3:SNP:173 G C 2615 off_target DP=103;DP4=0,2,66,35;AD=2,101;TYPE=SNP;DBXREF=dbSNP:rs2733534,g1000:0.327875,esp5400:0.425174,ExAC:0.388,clinvar:rs2733534|2; 3 14189340 chr3:SNP:174 A G 1368 off_target DP=52;DP4=0,0,50,2;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs2607749,g1000:0.368011; 3 14190237 chr3:SNP:175 T G 1394 . DP=53;DP4=0,0,20,33;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs2279017,g1000:0.679712,esp5400:0.634782,ExAC:0.63,clinvar:rs2279017|2; 3 14190268 chr3:SNP:176 G C 1047 off_target DP=41;DP4=0,0,14,27;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs2470353,g1000:0.327875,esp5400:0.422996,ExAC:0.412,clinvar:rs2470353|2; 3 14193889 chr3:SNP:177 C T 842 . DP=32;DP4=0,0,15,17;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs2227998,g1000:0.235423,esp5400:0.263388,ExAC:0.254,clinvar:rs2227998|2,MutationTaster:1; 3 14197987 chr3:SNP:178 A T 2024 . DP=77;DP4=0,0,44,33;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs2958057,g1000:1,ExAC:1,clinvar:rs2958057|2; 3 14201400 chr3:SNP:179 T G 841 off_target DP=36;DP4=1,1,3,31;AD=2,34;TYPE=SNP;DBXREF=dbSNP:rs3731124,g1000:0.152756; 3 14208625 chr3:SNP:180 G C 895 off_target DP=34;DP4=0,0,24,10;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs3729587,g1000:0.355631,esp5400:0.333001,ExAC:0.299,clinvar:rs3729587|2; 3 14211865 chr3:SNP:181 C A 639 off_target DP=25;DP4=0,0,20,5;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs3731081,g1000:0.197284; 3 14220095 chr3:SNP:182 C G 2041 . DP=80;DP4=0,0,42,38;AD=0,80;TYPE=SNP;DBXREF=dbSNP:rs2607775,g1000:0.327875,esp5400:0.430163,ExAC:0.414,clinvar:rs2607775|2; 3 15495301 chr3:SNP:183 G T 326 off_target DP=27;DP4=11,0,14,2;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs1077827,g1000:0.136382,esp5400:0.115006,ExAC:0.075,clinvar:rs1077827|2; 3 15562831 chr3:SNP:184 C T 153 low_coverage;off_target DP=9;DP4=2,0,7,0;AD=2,7;TYPE=SNP;DBXREF=dbSNP:rs17041264,g1000:0.0603035; 3 15643158 chr3:SNP:185 A C 255 off_target DP=33;DP4=14,6,12,1;AD=20,13;TYPE=SNP;DBXREF=dbSNP:rs115586700,g1000:0.0129792; 3 16635851 chr3:SNP:186 A G 118 low_coverage;off_target DP=19;DP4=13,0,6,0;AD=13,6;TYPE=SNP;DBXREF=dbSNP:rs76204094,g1000:0.0684904; 3 16635852 chr3:SNP:187 A C 112 off_target DP=20;DP4=14,0,6,0;AD=14,6;TYPE=SNP;DBXREF=dbSNP:rs79924124,g1000:0.0684904; 3 16635866 chr3:SNP:188 C G 303 off_target DP=22;DP4=8,0,14,0;AD=8,14;TYPE=SNP;DBXREF=dbSNP:rs13067997,g1000:0.263379; 3 16638775 chr3:SNP:189 T C 325 low_coverage;off_target DP=12;DP4=0,0,3,9;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2217204,g1000:0.745807; 3 16638810 chr3:SNP:190 T C 135 low_coverage;off_target DP=10;DP4=3,1,5,1;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs2195155,g1000:0.151158; 3 16639754 chr3:SNP:191 G T 1534 off_target DP=60;DP4=0,1,20,39;AD=1,59;TYPE=SNP;DBXREF=dbSNP:rs3773827,g1000:0.49381; 3 16640075 chr3:SNP:192 T C 735 . DP=58;DP4=12,11,23,12;AD=23,35;TYPE=SNP;DBXREF=dbSNP:rs11710967,g1000:0.0680911,esp5400:0.09799,ExAC:0.107,MutationTaster:0; 3 16646745 chr3:SNP:193 C G 1124 off_target DP=44;DP4=0,0,15,29;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs9847342,g1000:0.967652,esp5400:0.936053,ExAC:0.936; 3 24270500 chr3:INDEL:6 GAAAAAA GAAAAAAA 160 off_target DP=59;DP4=11,11,15,17;AD=22,32;TYPE=INDEL;DBXREF=dbSNP:rs3836253,ExAC:0.322; 3 27760524 chr3:SNP:194 A C 198 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs56306375,g1000:0.158746; 3 30686414 chr3:SNP:195 A G 347 . DP=28;DP4=2,10,3,13;AD=12,16;TYPE=SNP;DBXREF=dbSNP:rs1155705,g1000:0.412939,esp5400:0.323294,ExAC:0.372,clinvar:rs1155705|2|2; 3 30732821 chr3:SNP:196 C A 159 low_coverage;off_target DP=11;DP4=4,0,6,1;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs2276767,g1000:0.157947,clinvar:rs2276767|2; 3 33055721 chr3:SNP:197 A G 1065 . DP=43;DP4=0,0,10,33;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs4302331,g1000:0.927117,esp5400:0.933771,ExAC:0.98,clinvar:rs4302331|2,MutationTaster:0; 3 33062884 chr3:SNP:198 C A 117 low_coverage;off_target DP=17;DP4=11,0,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs13093517,g1000:0.218251; 3 33093190 chr3:SNP:199 T C 498 off_target DP=21;DP4=0,0,9,11;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs12632196,g1000:0.780152,esp5400:0.785096; 3 33110383 chr3:SNP:200 G A 1115 . DP=71;DP4=11,12,25,23;AD=23,48;TYPE=SNP;DBXREF=dbSNP:rs35289681,g1000:0.0091853,esp5400:0.015066,ExAC:0.018,clinvar:rs35289681|255,MutationTaster:1; 3 33138544 chr3:SNP:201 A G 1083 . DP=40;DP4=0,0,22,18;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs7614776,g1000:0.927716,esp5400:0.88653,ExAC:0.904,clinvar:rs7614776|255; 3 33138549 chr3:SNP:202 G A 370 . DP=33;DP4=7,9,11,6;AD=16,17;TYPE=SNP;DBXREF=dbSNP:rs7637099,g1000:0.431909,esp5400:0.477493,ExAC:0.56,clinvar:rs7637099|255,MutationTaster:0; 3 33171659 chr3:SNP:203 A G 154 off_target DP=23;DP4=0,15,0,8;AD=15,8;TYPE=SNP;DBXREF=dbSNP:rs4392367,g1000:0.858027; 3 33175793 chr3:SNP:204 C A 267 off_target DP=28;DP4=6,9,4,9;AD=15,13;TYPE=SNP;DBXREF=dbSNP:rs4234239,g1000:0.873802,esp5400:0.856851,ExAC:0.849; 3 37034946 chr3:SNP:205 G A 291 low_coverage;off_target DP=14;DP4=0,0,12,1;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1800734,g1000:0.320487,clinvar:rs1800734|2|2|2; 3 37512646 chr3:SNP:206 T C 315 low_coverage;off_target DP=16;DP4=2,1,7,6;AD=3,13;TYPE=SNP;DBXREF=dbSNP:rs11713408,g1000:0.552716,esp5400:0.596207,ExAC:0.603; 3 37512647 chr3:SNP:207 G C 309 low_coverage;off_target DP=17;DP4=1,3,7,6;AD=4,13;TYPE=SNP;DBXREF=dbSNP:rs11709385,g1000:0.552117,esp5400:0.599368,ExAC:0.603; 3 37535865 chr3:SNP:208 T C 650 off_target DP=24;DP4=0,0,18,6;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs472893,g1000:0.627396; 3 37535866 chr3:SNP:209 G A 556 off_target DP=22;DP4=0,0,16,5;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs539108,g1000:0.508387; 3 37535984 chr3:SNP:210 C G 1814 . DP=69;DP4=0,0,40,29;AD=0,69;TYPE=SNP;DBXREF=dbSNP:rs2507940,g1000:0.532748,esp5400:0.517011,ExAC:0.556; 3 37560676 chr3:SNP:211 A G 657 off_target DP=50;DP4=15,4,22,9;AD=19,31;TYPE=SNP;DBXREF=dbSNP:rs34289588,g1000:0.0225639; 3 37567416 chr3:SNP:212 G A 355 off_target DP=23;DP4=4,3,11,5;AD=7,16;TYPE=SNP;DBXREF=dbSNP:rs182100580,g1000:0.000599042; 3 37574951 chr3:SNP:213 G A 1210 . DP=46;DP4=0,0,20,26;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs267561,g1000:0.559105,esp5400:0.541365,ExAC:0.571,MutationTaster:1; 3 37575039 chr3:SNP:214 G A 263 low_coverage;off_target DP=10;DP4=0,0,1,9;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs267560,g1000:0.559105; 3 37818805 chr3:SNP:215 G C 1124 off_target DP=44;DP4=0,0,39,5;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2276003,g1000:0.257788; 3 38066070 chr3:SNP:216 G T 272 . DP=23;DP4=8,2,8,5;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs73060872,g1000:0.00858626,ExAC:0.007603; 3 38348949 chr3:SNP:217 G T 958 off_target DP=38;DP4=0,1,16,21;AD=1,37;TYPE=SNP;DBXREF=dbSNP:rs818823,g1000:0.349441; 3 38350479 chr3:SNP:218 T C 2286 . DP=87;DP4=0,0,58,29;AD=0,87;TYPE=SNP;DBXREF=dbSNP:rs818819,g1000:0.825879,esp5400:0.866146,ExAC:0.849; 3 38350519 chr3:SNP:219 G A 10000 . DP=132;DP4=0,0,64,68;AD=0,132;TYPE=SNP;DBXREF=dbSNP:rs818818,g1000:0.825479,esp5400:0.866053,ExAC:0.849,MutationTaster:0; 3 38350543 chr3:SNP:220 A G 10000 . DP=147;DP4=0,0,64,83;AD=0,147;TYPE=SNP;DBXREF=dbSNP:rs818817,g1000:0.836262,esp5400:0.873304,ExAC:0.845,MutationTaster:0; 3 38350630 chr3:SNP:221 C A 1630 off_target DP=62;DP4=0,0,15,47;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs704929,g1000:0.825679,esp5400:0.866053,ExAC:0.849; 3 38354839 chr3:SNP:222 G T 200 off_target DP=21;DP4=6,5,8,2;AD=11,10;TYPE=SNP;DBXREF=dbSNP:rs72867262,g1000:0.120407,esp5400:0.150679,ExAC:0.136; 3 38355176 chr3:INDEL:7 T TGCGCGCGCGCGC 328 off_target DP=60;DP4=25,12,15,2;AD=37,17;TYPE=INDEL;DBXREF=dbSNP:rs11268633; 3 38355184 chr3:SNP:223 T C 1008 off_target DP=81;DP4=29,5,35,12;AD=34,47;TYPE=SNP;DBXREF=dbSNP:rs12186097,g1000:0.253994,esp5400:0.157401; 3 38355509 chr3:SNP:224 C T 265 off_target DP=33;DP4=2,18,0,13;AD=20,13;TYPE=SNP;DBXREF=dbSNP:rs696253,g1000:0.577276; 3 38357961 chr3:SNP:225 C G 836 . DP=94;DP4=16,36,14,28;AD=52,42;TYPE=SNP;DBXREF=dbSNP:rs240033,g1000:0.25599,esp5400:0.278862,ExAC:0.272,MutationTaster:0; 3 38592406 chr3:SNP:226 A G 622 . DP=60;DP4=20,9,24,7;AD=29,31;TYPE=SNP;DBXREF=dbSNP:rs1805126,g1000:0.492412,esp5400:0.434799,ExAC:0.388,clinvar:rs1805126|2|2; 3 38597058 chr3:SNP:227 G A 150 low_coverage;off_target DP=18;DP4=11,0,7,0;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs41315501,g1000:0.0856629; 3 38622467 chr3:SNP:228 T C 1137 . DP=42;DP4=0,0,32,10;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs7430407,g1000:0.923123,esp5400:0.884257,ExAC:0.912,clinvar:rs7430407|2|2; 3 38627629 chr3:SNP:229 A G 335 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs7645173,g1000:0.940495; 3 38645420 chr3:SNP:230 T C 2202 . DP=198;DP4=68,24,73,33;AD=92,106;TYPE=SNP;DBXREF=dbSNP:rs1805124,g1000:0.230431,esp5400:0.245604,ExAC:0.221,clinvar:rs1805124|5|2|1|2,MutationTaster:0.002; 3 38646423 chr3:SNP:231 C T 223 off_target DP=25;DP4=3,11,0,11;AD=14,11;TYPE=SNP;DBXREF=dbSNP:rs7428779,g1000:0.17512,esp5400:0.185742,ExAC:0.171,clinvar:rs7428779|2; 3 38647642 chr3:SNP:232 G T 591 . DP=52;DP4=8,16,11,17;AD=24,28;TYPE=SNP;DBXREF=dbSNP:rs41312433,g1000:0.151158,esp5400:0.167413,ExAC:0.171,clinvar:rs41312433|2|2; 3 38648062 chr3:SNP:233 C T 178 low_coverage;off_target DP=12;DP4=3,1,6,2;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs6599222,g1000:0.845048; 3 38649924 chr3:SNP:234 T C 190 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs9873213,g1000:0.79353; 3 38655643 chr3:SNP:235 C T 293 off_target DP=32;DP4=3,15,1,13;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs9856587,g1000:0.223043; 3 38674712 chr3:SNP:236 T C 1263 . DP=51;DP4=0,0,31,20;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs6599230,g1000:0.781749,esp5400:0.835622,ExAC:0.773,clinvar:rs6599230|2|2; 3 38739574 chr3:SNP:237 T C 2024 . DP=77;DP4=0,0,36,41;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs6599241,g1000:1,ExAC:1,clinvar:rs6599241|2,MutationTaster:0.014; 3 38739845 chr3:SNP:238 A G 579 . DP=22;DP4=0,0,10,12;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs6599242,g1000:0.92472,esp5400:0.929913,ExAC:0.92,clinvar:rs6599242|2; 3 38753977 chr3:SNP:239 C T 425 off_target DP=37;DP4=3,14,8,12;AD=17,20;TYPE=SNP;DBXREF=dbSNP:rs6781740,g1000:0.251997,esp5400:0.257717,ExAC:0.253; 3 38763863 chr3:SNP:240 G C 1066 . DP=104;DP4=25,27,26,26;AD=52,52;TYPE=SNP;DBXREF=dbSNP:rs6771157,g1000:0.219649,esp5400:0.21965,ExAC:0.243,clinvar:rs6771157|2; 3 38764998 chr3:SNP:241 A G 604 . DP=76;DP4=21,24,12,19;AD=45,31;TYPE=SNP;DBXREF=dbSNP:rs12632942,g1000:0.219649,esp5400:0.219279,ExAC:0.241,clinvar:rs12632942|2,MutationTaster:0; 3 38766675 chr3:SNP:242 A G 1033 . DP=116;DP4=29,35,26,26;AD=64,52;TYPE=SNP;DBXREF=dbSNP:rs6795970,g1000:0.757987,esp5400:0.70264,ExAC:0.657,clinvar:rs6795970|2,MutationTaster:0; 3 38768247 chr3:SNP:243 G A 449 . DP=57;DP4=12,21,6,17;AD=33,23;TYPE=SNP;DBXREF=dbSNP:rs59468016,g1000:0.190495,esp5400:0.188232,ExAC:0.235,clinvar:rs59468016|2; 3 38768300 chr3:SNP:244 T C 362 . DP=52;DP4=17,16,9,10;AD=33,19;TYPE=SNP;DBXREF=dbSNP:rs57326399,g1000:0.210663,esp5400:0.208496,ExAC:0.241,clinvar:rs57326399|2,MutationTaster:0; 3 38769868 chr3:SNP:245 C T 105 low_coverage;off_target DP=11;DP4=6,0,5,0;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs34786326,g1000:0.202875; 3 38784029 chr3:SNP:246 T C 506 . DP=45;DP4=5,16,6,18;AD=21,24;TYPE=SNP;DBXREF=dbSNP:rs6599250,g1000:0.757788,esp5400:0.697342,ExAC:0.653,clinvar:rs6599250|2; 3 38793989 chr3:SNP:247 G A 286 . DP=35;DP4=7,14,2,12;AD=21,14;TYPE=SNP;DBXREF=dbSNP:rs7617919,g1000:0.207668,esp5400:0.201283,ExAC:0.233,clinvar:rs7617919|2; 3 38798171 chr3:SNP:248 C T 554 . DP=57;DP4=21,8,21,7;AD=29,28;TYPE=SNP;DBXREF=dbSNP:rs62244070,g1000:0.207468,esp5400:0.200502,ExAC:0.234,clinvar:rs62244070|2; 3 38802251 chr3:SNP:249 A G 669 off_target DP=70;DP4=15,21,13,21;AD=36,34;TYPE=SNP;DBXREF=dbSNP:rs7641844,g1000:0.388778,esp5400:0.304611,ExAC:0.329,clinvar:rs7641844|2; 3 39307256 chr3:SNP:250 C T 440 . DP=53;DP4=14,16,13,10;AD=30,23;TYPE=SNP;DBXREF=dbSNP:rs3732379,g1000:0.144369,esp5400:0.230338,ExAC:0.221,clinvar:rs3732379|5|255|255|255,MutationTaster:0; 3 39323163 chr3:SNP:251 A C 768 . DP=72;DP4=16,19,16,21;AD=35,37;TYPE=SNP;DBXREF=dbSNP:rs11715522,g1000:0.422923,esp5400:0.330818,ExAC:0.41,MutationTaster:0; 3 39431081 chr3:SNP:252 G A 832 . DP=69;DP4=12,18,15,24;AD=30,39;TYPE=SNP;DBXREF=dbSNP:rs2270770,g1000:0.416134,esp5400:0.36596,ExAC:0.482; 3 39432785 chr3:SNP:253 C T 224 low_coverage;off_target DP=16;DP4=6,0,10,0;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs45503293,g1000:0.105431; 3 39437800 chr3:SNP:254 A G 358 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs9877539,g1000:0.876597; 3 41274764 chr3:SNP:255 C A 763 off_target DP=29;DP4=0,0,19,10;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs2691680,g1000:0.993411; 3 41277040 chr3:SNP:256 C T 188 low_coverage;off_target DP=14;DP4=6,0,8,0;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs11564465,g1000:0.271965; 3 42304784 chr3:SNP:257 A G 207 low_coverage;off_target DP=9;DP4=1,0,8,0;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs1868522,g1000:0.548323,ExAC:0.52; 3 42305131 chr3:SNP:258 C G 1315 . DP=50;DP4=0,0,16,34;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs754635,g1000:0.765575,esp5400:0.824517,ExAC:0.814; 3 43414318 chr3:SNP:259 A G 1788 . DP=68;DP4=0,0,41,27;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs6441771,g1000:0.98143,ExAC:0.997,MutationTaster:0; 3 43591142 chr3:SNP:260 G A 317 off_target DP=33;DP4=17,1,13,2;AD=18,15;TYPE=SNP;DBXREF=dbSNP:rs12638282,g1000:0.542133; 3 43602803 chr3:SNP:261 C T 589 . DP=60;DP4=16,16,12,16;AD=32,28;TYPE=SNP;DBXREF=dbSNP:rs3772165,g1000:0.663139,esp5400:0.557167,ExAC:0.65,clinvar:rs3772165|255,MutationTaster:0; 3 43607136 chr3:SNP:262 T C 194 low_coverage DP=19;DP4=3,7,2,7;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs7616708,g1000:0.636781,esp5400:0.525777,ExAC:0.603,clinvar:rs7616708|2; 3 43642126 chr3:SNP:263 C A 343 off_target DP=22;DP4=1,6,3,12;AD=7,15;TYPE=SNP;DBXREF=dbSNP:rs6441785,g1000:0.825679; 3 45461102 chr3:INDEL:8 GTT GTTT 219 off_target DP=24;DP4=2,1,11,9;AD=3,20;TYPE=INDEL;DBXREF=dbSNP:rs11383389,g1000:0.660343; 3 45500174 chr3:SNP:264 C A 650 off_target DP=24;DP4=0,0,24,0;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs745551,g1000:0.86242; 3 45517799 chr3:SNP:265 T C 290 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs3733117,g1000:0.783746; 3 45527218 chr3:SNP:266 T C 895 . DP=34;DP4=0,0,23,11;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs7610357,g1000:0.782947,esp5400:0.772077,ExAC:0.903,clinvar:rs7610357|2; 3 45529896 chr3:SNP:267 A T 109 low_coverage;off_target DP=11;DP4=6,0,5,0;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs1825212,g1000:0.503195; 3 45530401 chr3:SNP:268 G A 548 off_target DP=59;DP4=12,19,11,17;AD=31,28;TYPE=SNP;DBXREF=dbSNP:rs3733116,g1000:0.503195; 3 45533224 chr3:SNP:269 G A 2537 . DP=100;DP4=0,0,58,40;AD=0,98;TYPE=SNP;DBXREF=dbSNP:rs2128361,g1000:0.782748,esp5400:0.77217,ExAC:0.902,clinvar:rs2128361|2; 3 45537973 chr3:SNP:270 C T 299 off_target DP=26;DP4=0,12,0,14;AD=12,14;TYPE=SNP;DBXREF=dbSNP:rs12638088,g1000:0.246006; 3 45542083 chr3:SNP:271 T C 610 off_target DP=43;DP4=4,10,8,21;AD=14,29;TYPE=SNP;DBXREF=dbSNP:rs2306522,g1000:0.503395,esp5400:0.470441,ExAC:0.604,clinvar:rs2306522|2; 3 45557707 chr3:SNP:272 G A 1028 . DP=94;DP4=31,15,26,22;AD=46,48;TYPE=SNP;DBXREF=dbSNP:rs11549809,g1000:0.246206,esp5400:0.285834,ExAC:0.286,clinvar:rs11549809|2; 3 45559519 chr3:SNP:273 T C 10000 . DP=129;DP4=0,0,52,76;AD=0,128;TYPE=SNP;DBXREF=dbSNP:rs2170549,g1000:0.849441,esp5400:0.848485,ExAC:0.951,clinvar:rs2170549|2; 3 45559621 chr3:SNP:274 C T 533 off_target DP=45;DP4=3,17,5,20;AD=20,25;TYPE=SNP;DBXREF=dbSNP:rs2276860,g1000:0.245607; 3 45561487 chr3:SNP:275 C T 138 low_coverage;off_target DP=14;DP4=7,0,7,0;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs267224,g1000:0.504193; 3 45565554 chr3:SNP:276 A G 2001 . DP=74;DP4=0,0,40,34;AD=0,74;TYPE=SNP;DBXREF=dbSNP:rs267220,g1000:0.860823,esp5400:0.865031,ExAC:0.958,clinvar:rs267220|2; 3 45817418 chr3:SNP:277 A G 2961 . DP=118;DP4=0,1,59,58;AD=1,117;TYPE=SNP;DBXREF=dbSNP:rs758386,g1000:0.948882,esp5400:0.961052,ExAC:0.956; 3 45963497 chr3:SNP:278 G T 342 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7618618,g1000:0.896565; 3 45965386 chr3:SNP:279 G A 155 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs2248228,g1000:0.378395; 3 45977866 chr3:SNP:280 C T 133 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs4535265,g1000:0.379792; 3 45977899 chr3:SNP:281 T C 895 off_target DP=34;DP4=0,0,30,4;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1873002,g1000:1,esp5400:0.999814,ExAC:1; 3 45996761 chr3:SNP:282 G A 2390 . DP=91;DP4=0,0,57,34;AD=0,91;TYPE=SNP;DBXREF=dbSNP:rs1463680,g1000:0.867212,esp5400:0.772913,ExAC:0.792,clinvar:rs1463680|2,MutationTaster:1; 3 46001063 chr3:SNP:283 G A 1379 off_target DP=54;DP4=0,0,15,39;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs1532071,g1000:0.533946,esp5400:0.439115,ExAC:0.551; 3 46008087 chr3:SNP:284 G A 1107 . DP=134;DP4=52,26,36,19;AD=78,55;TYPE=SNP;DBXREF=dbSNP:rs13079869,g1000:0.105631,esp5400:0.080312,ExAC:0.127,clinvar:rs13079869|2; 3 46008790 chr3:SNP:285 G A 676 . DP=77;DP4=20,23,13,21;AD=43,34;TYPE=SNP;DBXREF=dbSNP:rs3796375,g1000:0.395168,esp5400:0.332187,ExAC:0.429,clinvar:rs3796375|2,MutationTaster:1; 3 46009487 chr3:SNP:286 G A 2036 . DP=168;DP4=44,26,50,46;AD=70,96;TYPE=SNP;DBXREF=dbSNP:rs33910087,g1000:0.108227,esp5400:0.082264,ExAC:0.128,clinvar:rs33910087|2,MutationTaster:0; 3 46009684 chr3:SNP:287 G A 2122 . DP=291;DP4=92,83,61,55;AD=175,116;TYPE=SNP;DBXREF=dbSNP:rs3733101,g1000:0.00479233,esp5400:0.001859,ExAC:0.00294,MutationTaster:0; 3 46009864 chr3:SNP:288 C G 2083 . DP=81;DP4=1,0,25,55;AD=1,80;TYPE=SNP;DBXREF=dbSNP:rs3733100,g1000:0.532947,esp5400:0.441811,ExAC:0.566,clinvar:rs3733100|2,MutationTaster:1; 3 46010007 chr3:SNP:289 T C 1665 . DP=150;DP4=42,28,48,32;AD=70,80;TYPE=SNP;DBXREF=dbSNP:rs13071283,g1000:0.110024,esp5400:0.083473,ExAC:0.129,clinvar:rs13071283|2; 3 46010077 chr3:SNP:290 C T 2986 . DP=119;DP4=0,0,53,65;AD=0,118;TYPE=SNP;DBXREF=dbSNP:rs4683158,g1000:0.928115,esp5400:0.834728,ExAC:0.847,clinvar:rs4683158|2,MutationTaster:1; 3 46014545 chr3:SNP:291 T G 236 low_coverage;off_target DP=16;DP4=5,0,8,3;AD=5,11;TYPE=SNP;DBXREF=dbSNP:rs41289622,g1000:0.105431,esp5400:0.079305,ExAC:0.126; 3 46016851 chr3:SNP:292 A T 423 off_target DP=50;DP4=10,18,14,8;AD=28,22;TYPE=SNP;DBXREF=dbSNP:rs751552,g1000:0.386981,esp5400:0.326455,ExAC:0.427,clinvar:rs751552|2; 3 46016944 chr3:SNP:293 C T 190 low_coverage;off_target DP=12;DP4=0,4,0,8;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs751553,g1000:0.386781; 3 46021218 chr3:SNP:294 G T 1408 . DP=52;DP4=0,0,27,25;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs4682801,g1000:0.762979,esp5400:0.656256,ExAC:0.799,clinvar:rs4682801|2; 3 46026259 chr3:SNP:295 G A 285 off_target DP=42;DP4=17,10,9,6;AD=27,15;TYPE=SNP;DBXREF=dbSNP:rs3733097,g1000:0.386781; 3 46306130 chr3:SNP:296 G T 107 low_coverage;off_target DP=14;DP4=0,9,0,5;AD=9,5;TYPE=SNP;DBXREF=dbSNP:rs3091250,g1000:0.346246; 3 46399208 chr3:SNP:297 G A 477 . DP=46;DP4=15,8,13,10;AD=23,23;TYPE=SNP;DBXREF=dbSNP:rs1799864,g1000:0.153754,esp5400:0.114322,ExAC:0.126,clinvar:rs1799864|255,MutationTaster:0; 3 46449978 chr3:SNP:298 A C 10000 . DP=158;DP4=1,1,76,80;AD=2,156;TYPE=SNP;DBXREF=dbSNP:rs11266744,g1000:0.33766,esp5400:0.291304,ExAC:0.379; 3 46450070 chr3:SNP:299 T A 1671 . DP=65;DP4=1,1,29,34;AD=2,63;TYPE=SNP;DBXREF=dbSNP:rs3204849,g1000:0.348842,esp5400:0.303528,ExAC:0.38,MutationTaster:0; 3 46480801 chr3:SNP:300 A G 2736 . DP=106;DP4=1,0,73,32;AD=1,105;TYPE=SNP;DBXREF=dbSNP:rs9110,g1000:0.522564,esp5400:0.382785,ExAC:0.397; 3 46482861 chr3:SNP:301 G A 650 off_target DP=24;DP4=0,0,17,7;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs34000233,g1000:0.196086,esp5400:0.151256,ExAC:0.202; 3 46484898 chr3:SNP:302 T G 1022 off_target DP=40;DP4=0,0,27,13;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs7615975,g1000:0.919928,esp5400:0.827628,ExAC:0.836; 3 46484964 chr3:SNP:303 G A 2318 . DP=90;DP4=0,0,45,44;AD=0,89;TYPE=SNP;DBXREF=dbSNP:rs1042073,g1000:0.448882,esp5400:0.332744,ExAC:0.369; 3 46487003 chr3:SNP:304 A G 1057 off_target DP=46;DP4=1,2,6,37;AD=3,43;TYPE=SNP;DBXREF=dbSNP:rs2269435,g1000:0.452276; 3 46487750 chr3:SNP:305 A G 380 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6776504,g1000:0.452476; 3 46489015 chr3:SNP:306 A G 217 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs743659,g1000:0.417332; 3 46490250 chr3:SNP:307 A G 540 off_target DP=22;DP4=1,0,20,1;AD=1,21;TYPE=SNP;DBXREF=dbSNP:rs1475967,g1000:0.615615; 3 46490366 chr3:SNP:308 G A 1412 . DP=128;DP4=31,31,40,26;AD=62,66;TYPE=SNP;DBXREF=dbSNP:rs2230895,g1000:0.160942,esp5400:0.115649,ExAC:0.12; 3 46490474 chr3:SNP:309 G A 1411 . DP=164;DP4=42,47,32,42;AD=89,74;TYPE=SNP;DBXREF=dbSNP:rs2230894,g1000:0.215655,esp5400:0.168342,ExAC:0.191; 3 46491290 chr3:SNP:310 G A 360 off_target DP=32;DP4=11,4,13,4;AD=15,17;TYPE=SNP;DBXREF=dbSNP:rs2269443,g1000:0.182907; 3 46491948 chr3:SNP:311 T A 515 off_target DP=53;DP4=19,8,22,4;AD=27,26;TYPE=SNP;DBXREF=dbSNP:rs6774882,g1000:0.221645,esp5400:0.168407,ExAC:0.165; 3 46496642 chr3:SNP:312 C G 136 low_coverage;off_target DP=11;DP4=5,0,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs6776621,g1000:0.147165; 3 46497675 chr3:SNP:313 A G 482 off_target DP=47;DP4=16,7,17,7;AD=23,24;TYPE=SNP;DBXREF=dbSNP:rs3796377,g1000:0.147564; 3 46497723 chr3:SNP:314 C G 1063 off_target DP=105;DP4=37,16,33,19;AD=53,52;TYPE=SNP;DBXREF=dbSNP:rs4683227,g1000:0.147364; 3 46501213 chr3:SNP:315 T C 1945 . DP=74;DP4=0,0,38,36;AD=0,74;TYPE=SNP;DBXREF=dbSNP:rs1126478,g1000:0.627396,esp5400:0.50093,ExAC:0.436,MutationTaster:0; 3 46501268 chr3:SNP:316 C T 1630 . DP=62;DP4=0,0,31,31;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs1126477,g1000:0.469649,esp5400:0.398308,ExAC:0.328,MutationTaster:0; 3 46501284 chr3:INDEL:9 C CCTT 1453 . DP=65;DP4=5,2,20,36;AD=7,56;TYPE=INDEL;DBXREF=dbSNP:rs10662431,g1000:0.990415,ExAC:0.981; 3 46620614 chr3:SNP:317 T C 1347 . DP=56;DP4=1,1,37,17;AD=2,54;TYPE=SNP;DBXREF=dbSNP:rs11130097,g1000:0.506989,esp5400:0.516174,ExAC:0.524,MutationTaster:0; 3 46621123 chr3:SNP:318 A T 358 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs9819070,g1000:0.990415; 3 46713102 chr3:SNP:319 C T 384 off_target DP=70;DP4=23,25,10,12;AD=48,22;TYPE=SNP;DBXREF=dbSNP:rs6776565,g1000:0.308107,esp5400:0.273564,ExAC:0.332; 3 46714708 chr3:SNP:320 C G 167 low_coverage;off_target DP=17;DP4=7,2,8,0;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs12487651,g1000:0.126198; 3 46714797 chr3:SNP:321 C T 433 off_target DP=43;DP4=12,9,13,8;AD=21,21;TYPE=SNP;DBXREF=dbSNP:rs11130103,g1000:0.305511,esp5400:0.248828,ExAC:0.193; 3 46714821 chr3:SNP:322 C G 664 . DP=63;DP4=16,14,18,15;AD=30,33;TYPE=SNP;DBXREF=dbSNP:rs11130104,g1000:0.305312,esp5400:0.254153,ExAC:0.209; 3 46717065 chr3:SNP:323 C G 213 off_target DP=30;DP4=13,6,8,3;AD=19,11;TYPE=SNP;DBXREF=dbSNP:rs7635360,g1000:0.308307,esp5400:0.268451,ExAC:0.332; 3 46717931 chr3:SNP:324 T C 325 off_target DP=35;DP4=3,16,6,10;AD=19,16;TYPE=SNP;DBXREF=dbSNP:rs6808525,g1000:0.782748,esp5400:0.768265,ExAC:0.77; 3 46717957 chr3:SNP:325 A G 144 off_target DP=25;DP4=3,14,3,5;AD=17,8;TYPE=SNP;DBXREF=dbSNP:rs9876451,g1000:0.738219; 3 46718298 chr3:SNP:326 A G 442 off_target DP=26;DP4=1,6,2,17;AD=7,19;TYPE=SNP;DBXREF=dbSNP:rs6806400,g1000:0.821286,esp5400:0.815114,ExAC:0.792; 3 46723551 chr3:SNP:327 G A 779 . DP=78;DP4=21,20,19,18;AD=41,37;TYPE=SNP;DBXREF=dbSNP:rs4683310,g1000:0.313099,esp5400:0.334542,ExAC:0.396; 3 46723663 chr3:SNP:328 C T 185 low_coverage;off_target DP=15;DP4=2,5,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs4683311,g1000:0.321685; 3 46726948 chr3:SNP:329 C A 362 off_target DP=47;DP4=22,7,14,4;AD=29,18;TYPE=SNP;DBXREF=dbSNP:rs77014442,g1000:0.0225639; 3 46751073 chr3:INDEL:10 TAAG T 216 . DP=38;DP4=17,7,8,3;AD=24,11;TYPE=INDEL;DBXREF=dbSNP:rs10578999,g1000:0.753195,ExAC:0.624,clinvar:rs10578999|2; 3 46944274 chr3:SNP:330 T C 521 . DP=58;DP4=14,18,13,13;AD=32,26;TYPE=SNP;DBXREF=dbSNP:rs1138518,g1000:0.643371,esp5400:0.677356,ExAC:0.614; 3 47033937 chr3:SNP:331 C T 741 off_target DP=72;DP4=19,17,19,17;AD=36,36;TYPE=SNP;DBXREF=dbSNP:rs13066214,g1000:0.472244,esp5400:0.462623,ExAC:0.508,clinvar:rs13066214|2; 3 47035735 chr3:SNP:332 T G 130 low_coverage;off_target DP=9;DP4=2,1,4,2;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs749511,g1000:0.327077; 3 47035900 chr3:SNP:333 C T 383 off_target DP=38;DP4=11,9,12,6;AD=20,18;TYPE=SNP;DBXREF=dbSNP:rs749512,g1000:0.305911,esp5400:0.313518,ExAC:0.26,clinvar:rs749512|2; 3 47036756 chr3:SNP:334 C G 1369 . DP=116;DP4=40,13,45,18;AD=53,63;TYPE=SNP;DBXREF=dbSNP:rs11720139,g1000:0.316693,esp5400:0.303644,ExAC:0.28,clinvar:rs11720139|2,MutationTaster:1; 3 47038135 chr3:INDEL:11 C CA 1273 off_target DP=80;DP4=2,9,51,13;AD=11,64;TYPE=INDEL;DBXREF=dbSNP:rs11396344,g1000:0.95028; 3 47043386 chr3:SNP:335 C T 431 off_target DP=54;DP4=16,16,13,9;AD=32,22;TYPE=SNP;DBXREF=dbSNP:rs73075647,g1000:0.106829,esp5400:0.180566,ExAC:0.156,clinvar:rs73075647|2; 3 47043538 chr3:SNP:336 C T 1458 . DP=189;DP4=51,62,36,40;AD=113,76;TYPE=SNP;DBXREF=dbSNP:rs2305634,g1000:0.471645,esp5400:0.449111,ExAC:0.457,clinvar:rs2305634|2,MutationTaster:0; 3 47043622 chr3:SNP:337 G A 1250 . DP=119;DP4=23,37,15,44;AD=60,59;TYPE=SNP;DBXREF=dbSNP:rs2305635,g1000:0.320088,esp5400:0.329824,ExAC:0.242,clinvar:rs2305635|2,MutationTaster:1; 3 47044122 chr3:SNP:338 A T 2432 off_target DP=90;DP4=0,0,38,52;AD=0,90;TYPE=SNP;DBXREF=dbSNP:rs11928558,g1000:0.949281,esp5400:0.950321,ExAC:0.984,clinvar:rs11928558|2; 3 47045739 chr3:SNP:339 C G 679 . DP=85;DP4=24,25,12,24;AD=49,36;TYPE=SNP;DBXREF=dbSNP:rs1079276,g1000:0.472045,esp5400:0.470862,ExAC:0.536,clinvar:rs1079276|2,MutationTaster:0; 3 47046842 chr3:SNP:340 G C 211 off_target DP=20;DP4=3,7,5,5;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs2305638,g1000:0.546526,esp5400:0.560633,ExAC:0.537,clinvar:rs2305638|2; 3 47047176 chr3:INDEL:12 AGGGGG AGGGGGG 108 off_target DP=96;DP4=34,23,15,18;AD=57,33;TYPE=INDEL;DBXREF=dbSNP:rs5848810,g1000:0.553315,clinvar:rs750620854|2; 3 47047358 chr3:SNP:341 A C 446 off_target DP=58;DP4=14,21,13,10;AD=35,23;TYPE=SNP;DBXREF=dbSNP:rs13081418,g1000:0.234026,esp5400:0.234513,ExAC:0.297,clinvar:rs13081418|2; 3 47048452 chr3:SNP:342 T G 338 off_target DP=27;DP4=7,4,10,6;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs56217494,g1000:0.323283; 3 47079112 chr3:SNP:343 G A 442 off_target DP=40;DP4=15,4,14,7;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs6768722,g1000:0.677516,esp5400:0.644265,ExAC:0.631; 3 47125385 chr3:SNP:344 G A 379 . DP=27;DP4=3,7,9,8;AD=10,17;TYPE=SNP;DBXREF=dbSNP:rs4082155,g1000:0.469848,esp5400:0.470534,ExAC:0.534,clinvar:rs4082155|1,MutationTaster:0.91; 3 47129903 chr3:SNP:345 C T 205 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs12631730,g1000:0.797724; 3 47142907 chr3:INDEL:13 TCCCC TCC 292 off_target DP=33;DP4=15,3,9,6;AD=18,15;TYPE=INDEL;DBXREF=dbSNP:rs60548476,g1000:0.60024,ExAC:0.572; 3 47162661 chr3:SNP:346 A G 826 . DP=90;DP4=23,27,20,20;AD=50,40;TYPE=SNP;DBXREF=dbSNP:rs6767907,g1000:0.678315,esp5400:0.645473,ExAC:0.634; 3 47456225 chr3:SNP:347 T C 867 off_target DP=32;DP4=0,0,9,23;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs6442066,g1000:0.979832; 3 47459679 chr3:SNP:348 C T 457 . DP=50;DP4=19,9,18,4;AD=28,22;TYPE=SNP;DBXREF=dbSNP:rs12487736,g1000:0.452276,esp5400:0.465712,ExAC:0.492,MutationTaster:0.982; 3 47462200 chr3:SNP:349 T C 1063 . DP=42;DP4=0,1,17,24;AD=1,41;TYPE=SNP;DBXREF=dbSNP:rs900690,g1000:0.955072,esp5400:0.952009,ExAC:0.987; 3 47462587 chr3:SNP:350 A G 632 off_target DP=24;DP4=0,0,3,21;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs900691,g1000:0.975839; 3 48508585 chr3:SNP:351 C T 1043 . DP=156;DP4=59,41,34,22;AD=100,56;TYPE=SNP;DBXREF=dbSNP:rs11797,g1000:0.313299,esp5400:0.393753,ExAC:0.37,clinvar:rs11797|2; 3 48602523 chr3:INDEL:14 G GGGC 2345 off_target DP=95;DP4=3,1,48,40;AD=4,88;TYPE=INDEL;DBXREF=dbSNP:rs138595277,g1000:0.999401,ExAC:1,clinvar:rs138595277|3; 3 48606065 chr3:SNP:352 G T 293 off_target DP=28;DP4=9,5,10,4;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs2532848,g1000:0.0611022; 3 48610625 chr3:SNP:353 G T 429 . DP=39;DP4=14,3,15,6;AD=17,21;TYPE=SNP;DBXREF=dbSNP:rs61729223,g1000:0.00539137,esp5400:0.014039,ExAC:0.013,clinvar:rs61729223|3; 3 48612471 chr3:SNP:354 G A 112 low_coverage;off_target DP=10;DP4=3,2,3,2;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs76140443,g1000:0.0301518,esp5400:0.055224,ExAC:0.062; 3 48624611 chr3:SNP:355 C T 262 off_target DP=26;DP4=3,10,5,8;AD=13,13;TYPE=SNP;DBXREF=dbSNP:rs2255532,g1000:0.430511,esp5400:0.479085,ExAC:0.351,clinvar:rs2255532|2; 3 48625266 chr3:SNP:356 T C 10000 . DP=148;DP4=1,0,71,75;AD=1,146;TYPE=SNP;DBXREF=dbSNP:rs1264194,g1000:0.68111,esp5400:0.774958,ExAC:0.678,clinvar:rs1264194|2; 3 48628014 chr3:SNP:357 G A 677 . DP=51;DP4=9,11,13,18;AD=20,31;TYPE=SNP;DBXREF=dbSNP:rs2228561,g1000:0.0990415,esp5400:0.101506,ExAC:0.119,clinvar:rs2228561|2,MutationTaster:0; 3 48897078 chr3:SNP:358 A G 1105 off_target DP=42;DP4=0,0,13,29;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs6414612,g1000:0.995208,esp5400:0.993214,ExAC:0.991,clinvar:rs6414612|2; 3 49162583 chr3:SNP:359 C T 946 . DP=121;DP4=40,31,26,23;AD=71,49;TYPE=SNP;DBXREF=dbSNP:rs35713889,g1000:0.0305511,esp5400:0.042387,ExAC:0.033,clinvar:rs35713889|2,MutationTaster:1; 3 49166069 chr3:SNP:360 C T 1446 off_target DP=55;DP4=0,0,21,34;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs9865051,g1000:0.903355,esp5400:0.808608,ExAC:0.835; 3 49167961 chr3:SNP:361 G T 192 off_target DP=20;DP4=4,7,3,6;AD=11,9;TYPE=SNP; 3 49395673 chr3:INDEL:15 GGCCGCC G 578 . DP=62;DP4=19,16,7,20;AD=35,27;TYPE=INDEL;DBXREF=dbSNP:rs17838762,ExAC:0.047; 3 49548008 chr3:SNP:362 C G 1189 . DP=48;DP4=0,0,32,16;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs2131107,g1000:0.965855,esp5400:0.972207,ExAC:0.992,clinvar:rs2131107|2,MutationTaster:0; 3 49548294 chr3:SNP:363 T C 632 off_target DP=24;DP4=0,0,0,24;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2329024,g1000:0.965855,esp5400:0.972672,ExAC:0.992,clinvar:rs2329024|1|2; 3 49722502 chr3:SNP:364 C G 281 low_variant_fraction DP=99;DP4=35,46,8,10;AD=81,18;TYPE=SNP;DBXREF=MutationTaster:1; 3 49723274 chr3:SNP:365 G A 335 low_variant_fraction;off_target DP=124;DP4=34,69,10,11;AD=103,21;TYPE=SNP;DBXREF=dbSNP:rs75193211,esp5400:0.289877; 3 49723346 chr3:SNP:366 G A 168 low_variant_fraction DP=134;DP4=57,64,4,9;AD=121,13;TYPE=SNP;DBXREF=dbSNP:rs779653767; 3 49723735 chr3:SNP:367 C G 192 . DP=33;DP4=16,7,3,7;AD=23,10;TYPE=SNP;DBXREF=dbSNP:rs184629099,esp5400:0.23743; 3 49723784 chr3:SNP:368 C A 702 . DP=77;DP4=21,21,22,13;AD=42,35;TYPE=SNP;DBXREF=dbSNP:rs9713651,esp5400:0.38152; 3 49723823 chr3:SNP:369 A G 198 low_variant_fraction DP=109;DP4=53,42,7,7;AD=95,14;TYPE=SNP;DBXREF=dbSNP:rs7431215,esp5400:0.144612; 3 49723881 chr3:SNP:370 G C 309 low_variant_fraction DP=137;DP4=60,56,13,8;AD=116,21;TYPE=SNP;DBXREF=dbSNP:rs6777426,esp5400:0.000186,MutationTaster:1; 3 49724014 chr3:SNP:371 G A 328 off_target DP=45;DP4=14,14,12,5;AD=28,17;TYPE=SNP;DBXREF=dbSNP:rs6779963; 3 49724048 chr3:INDEL:16 TCCCC TCCC 198 off_target DP=81;DP4=25,17,25,13;AD=42,38;TYPE=INDEL;DBXREF=dbSNP:rs10711993; 3 49724183 chr3:SNP:372 C G 275 low_variant_fraction DP=137;DP4=65,52,4,16;AD=117,20;TYPE=SNP;DBXREF=dbSNP:rs201944579,MutationTaster:1; 3 49724197 chr3:SNP:373 T C 245 low_variant_fraction DP=122;DP4=53,51,1,16;AD=104,17;TYPE=SNP;DBXREF=dbSNP:rs200307945,MutationTaster:1; 3 49724808 chr3:SNP:374 T C 1253 . DP=97;DP4=20,19,35,23;AD=39,58;TYPE=SNP;DBXREF=dbSNP:rs3020779,g1000:0.860224,esp5400:0.787189,ExAC:0.857; 3 49725021 chr3:SNP:375 C T 166 low_variant_fraction DP=71;DP4=26,34,5,6;AD=60,11;TYPE=SNP;DBXREF=dbSNP:rs114429531,esp5400:0.01125,MutationTaster:0.18; 3 49725034 chr3:SNP:376 T A 117 low_variant_fraction DP=72;DP4=29,35,4,4;AD=64,8;TYPE=SNP;DBXREF=dbSNP:rs142964215,esp5400:0.054471,MutationTaster:0; 3 49725038 chr3:SNP:377 G C 128 low_variant_fraction DP=86;DP4=37,40,4,5;AD=77,9;TYPE=SNP;DBXREF=dbSNP:rs754031164,esp5400:0.028537; 3 49725948 chr3:SNP:378 C T 107 low_coverage;off_target DP=12;DP4=7,0,3,2;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs141881740; 3 49726028 chr3:SNP:379 T C 405 . DP=67;DP4=25,20,11,11;AD=45,22;TYPE=SNP;DBXREF=dbSNP:rs62262685,esp5400:0.250744; 3 49726070 chr3:SNP:380 G A 383 . DP=82;DP4=31,29,9,13;AD=60,22;TYPE=SNP;DBXREF=dbSNP:rs62262686,esp5400:0.146714,clinvar:rs62262686|1,MutationTaster:1; 3 49924940 chr3:SNP:381 T C 3006 . DP=118;DP4=2,0,58,58;AD=2,116;TYPE=SNP;DBXREF=dbSNP:rs1062633,g1000:0.419129,esp5400:0.561071,ExAC:0.418,MutationTaster:0; 3 49928691 chr3:SNP:382 T C 10000 . DP=132;DP4=0,0,81,51;AD=0,132;TYPE=SNP;DBXREF=dbSNP:rs7433231,g1000:1,ExAC:1,MutationTaster:0.017; 3 49936102 chr3:SNP:383 T C 10000 . DP=126;DP4=0,0,50,76;AD=0,126;TYPE=SNP;DBXREF=dbSNP:rs2230590,g1000:0.416534,esp5400:0.558747,ExAC:0.417,MutationTaster:0; 3 49936278 chr3:SNP:384 G A 310 off_target DP=41;DP4=15,9,11,6;AD=24,17;TYPE=SNP;DBXREF=dbSNP:rs201143436,g1000:0.00399361,esp5400:0.011898,ExAC:0.011; 3 50645635 chr3:SNP:385 T G 1302 off_target DP=51;DP4=0,0,15,36;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs621975,g1000:0.945288; 3 50645793 chr3:SNP:386 C G 681 . DP=58;DP4=16,9,17,16;AD=25,33;TYPE=SNP;DBXREF=dbSNP:rs622502,g1000:0.861022,esp5400:0.84235,ExAC:0.884; 3 50927540 chr3:SNP:387 G T 354 off_target DP=34;DP4=2,15,3,14;AD=17,17;TYPE=SNP;DBXREF=dbSNP:rs13088434,g1000:0.0670927,esp5400:0.108385,ExAC:0.079; 3 51246360 chr3:SNP:388 A G 243 off_target DP=24;DP4=3,10,1,10;AD=13,11;TYPE=SNP;DBXREF=dbSNP:rs4301044,g1000:0.931909; 3 51273773 chr3:SNP:389 T C 737 . DP=28;DP4=0,0,17,11;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs1480361,g1000:0.996406,esp5400:0.991411,ExAC:0.991; 3 51274902 chr3:INDEL:17 TA TAA 550 off_target DP=53;DP4=13,9,17,14;AD=22,31;TYPE=INDEL;DBXREF=dbSNP:rs11386090,g1000:0.264776,ExAC:0.434; 3 51393706 chr3:INDEL:18 C CAG 1200 off_target DP=49;DP4=0,0,6,39;AD=0,45;TYPE=INDEL;DBXREF=dbSNP:rs35251332,g1000:0.988618,ExAC:0.979; 3 52256697 chr3:SNP:390 C T 801 . DP=32;DP4=0,0,13,18;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs352140,g1000:0.415535,esp5400:0.477319,ExAC:0.492,MutationTaster:0.001; 3 52321976 chr3:SNP:391 C A 233 low_coverage;off_target DP=14;DP4=1,3,1,9;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs11707056,g1000:0.0473243; 3 52324982 chr3:SNP:392 G C 295 . DP=50;DP4=19,15,10,6;AD=34,16;TYPE=SNP;DBXREF=dbSNP:rs150662353,g1000:0.000399361,esp5400:0.000558,ExAC:0.000766,MutationTaster:1; 3 52325039 chr3:SNP:393 G A 973 . DP=57;DP4=9,7,18,23;AD=16,41;TYPE=SNP;DBXREF=dbSNP:rs35976326,g1000:0.150958,esp5400:0.178379,ExAC:0.108; 3 52325759 chr3:SNP:394 A G 338 . DP=40;DP4=17,6,11,6;AD=23,17;TYPE=SNP;DBXREF=dbSNP:rs2276834,g1000:0.508986,esp5400:0.548522,ExAC:0.484; 3 52328024 chr3:SNP:395 G A 119 low_coverage DP=16;DP4=2,8,3,3;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs55676974,g1000:0.150958,ExAC:0.053; 3 52328607 chr3:SNP:396 C T 148 low_coverage DP=9;DP4=1,2,2,4;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs11708811,g1000:0.0646965,ExAC:0.047; 3 52442354 chr3:SNP:397 G C 114 low_coverage;off_target DP=14;DP4=7,1,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs123602,g1000:0.164337; 3 52815905 chr3:SNP:398 T C 160 low_coverage;off_target DP=15;DP4=5,2,6,2;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs2710323,g1000:0.521765,esp5400:0.54657,ExAC:0.487; 3 52820981 chr3:SNP:399 A T 225 . DP=36;DP4=14,10,9,3;AD=24,12;TYPE=SNP;DBXREF=dbSNP:rs678,g1000:0.286941,esp5400:0.296616,ExAC:0.349,MutationTaster:1; 3 52821011 chr3:SNP:400 A G 377 . DP=49;DP4=13,16,13,7;AD=29,20;TYPE=SNP;DBXREF=dbSNP:rs1042779,g1000:0.42472,esp5400:0.42071,ExAC:0.398,MutationTaster:0; 3 52821177 chr3:SNP:401 A C 1237 off_target DP=109;DP4=31,19,34,25;AD=50,59;TYPE=SNP;DBXREF=dbSNP:rs2286798,g1000:0.35623,esp5400:0.359546,ExAC:0.369; 3 52821992 chr3:INDEL:19 CT C 167 . DP=43;DP4=17,12,5,8;AD=29,13;TYPE=INDEL;DBXREF=dbSNP:rs68094128,g1000:0.288339,ExAC:0.375; 3 52825462 chr3:SNP:402 A G 103 low_coverage;off_target DP=16;DP4=10,0,5,0;AD=10,5;TYPE=SNP;DBXREF=dbSNP:rs1076425,g1000:0.312899; 3 52825528 chr3:SNP:403 T C 663 . DP=72;DP4=31,9,23,9;AD=40,32;TYPE=SNP;DBXREF=dbSNP:rs1075653,g1000:0.398762,esp5400:0.402956,ExAC:0.376; 3 52825585 chr3:SNP:404 T C 776 . DP=98;DP4=36,21,26,14;AD=57,40;TYPE=SNP;DBXREF=dbSNP:rs9324,g1000:0.411941,esp5400:0.417829,ExAC:0.38; 3 52831009 chr3:SNP:405 C T 193 off_target DP=24;DP4=7,7,8,2;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs2240920,g1000:0.327476; 3 52833219 chr3:SNP:406 G A 387 off_target DP=32;DP4=4,10,6,12;AD=14,18;TYPE=SNP;DBXREF=dbSNP:rs2535629,g1000:0.484425; 3 52833805 chr3:SNP:407 C A 1141 . DP=114;DP4=33,25,30,26;AD=58,56;TYPE=SNP;DBXREF=dbSNP:rs3617,g1000:0.54373,esp5400:0.541641,ExAC:0.479,MutationTaster:0; 3 52837793 chr3:SNP:408 T C 609 off_target DP=47;DP4=15,4,19,9;AD=19,28;TYPE=SNP;DBXREF=dbSNP:rs4481150,g1000:0.510383; 3 52837855 chr3:SNP:409 T C 1029 off_target DP=99;DP4=36,13,33,17;AD=49,50;TYPE=SNP;DBXREF=dbSNP:rs2710331,g1000:0.388778,esp5400:0.388055,ExAC:0.365; 3 52840853 chr3:SNP:410 C T 332 off_target DP=43;DP4=25,1,13,4;AD=26,17;TYPE=SNP;DBXREF=dbSNP:rs62255418,g1000:0.0169728; 3 52847601 chr3:SNP:411 C T 118 low_coverage;off_target DP=9;DP4=0,4,0,5;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs2071044,g1000:0.552716; 3 52851137 chr3:SNP:412 T C 387 off_target DP=32;DP4=1,13,1,17;AD=14,18;TYPE=SNP;DBXREF=dbSNP:rs2240917,g1000:0.507788; 3 52852060 chr3:SNP:413 T C 859 . DP=95;DP4=34,18,24,19;AD=52,43;TYPE=SNP;DBXREF=dbSNP:rs2245538,g1000:0.507788,esp5400:0.476947,ExAC:0.431; 3 52853340 chr3:SNP:414 G C 974 off_target DP=37;DP4=0,0,31,6;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs7620907,g1000:0.9998; 3 52853747 chr3:SNP:415 C G 754 off_target DP=60;DP4=11,13,22,14;AD=24,36;TYPE=SNP;DBXREF=dbSNP:rs2276815,g1000:0.258387,esp5400:0.251813,ExAC:0.274; 3 52854186 chr3:SNP:416 A C 132 low_coverage;off_target DP=19;DP4=6,6,4,3;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs2239548,g1000:0.508187; 3 52855229 chr3:SNP:417 T C 184 low_coverage;off_target DP=12;DP4=0,4,1,7;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs2239547,g1000:0.258986; 3 52860366 chr3:SNP:418 C G 319 off_target DP=28;DP4=10,3,10,5;AD=13,15;TYPE=SNP;DBXREF=dbSNP:rs4687658,g1000:0.245208; 3 52860936 chr3:SNP:419 C T 600 . DP=56;DP4=14,14,12,16;AD=28,28;TYPE=SNP;DBXREF=dbSNP:rs2276817,g1000:0.245008,esp5400:0.227459,ExAC:0.248; 3 52861211 chr3:SNP:420 A T 528 . DP=53;DP4=15,12,15,10;AD=27,25;TYPE=SNP;DBXREF=dbSNP:rs13072536,g1000:0.245208,esp5400:0.227738,ExAC:0.248,MutationTaster:1; 3 52864584 chr3:SNP:421 A G 1163 . DP=127;DP4=32,35,32,28;AD=67,60;TYPE=SNP;DBXREF=dbSNP:rs2071042,g1000:0.508387,esp5400:0.478435,ExAC:0.432; 3 52864693 chr3:SNP:422 T G 375 off_target DP=41;DP4=6,17,4,14;AD=23,18;TYPE=SNP;DBXREF=dbSNP:rs2071041,g1000:0.359425,esp5400:0.339468,ExAC:0.277; 3 53125922 chr3:SNP:423 T C 1302 . DP=51;DP4=0,0,31,20;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs11242,g1000:0.490415,esp5400:0.453802,ExAC:0.55,clinvar:rs11242|2; 3 53126143 chr3:SNP:424 G A 253 low_coverage;off_target DP=11;DP4=1,0,5,5;AD=1,10;TYPE=SNP;DBXREF=dbSNP:rs2581786,g1000:0.490216; 3 53133526 chr3:SNP:425 A G 1446 off_target DP=55;DP4=0,0,15,40;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs2581829,g1000:0.521166,esp5400:0.489217,ExAC:0.583; 3 53139977 chr3:SNP:426 G A 894 off_target DP=33;DP4=0,0,0,33;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2336722,g1000:0.51857; 3 53700550 chr3:SNP:427 T C 1813 . DP=154;DP4=36,32,35,51;AD=68,86;TYPE=SNP;DBXREF=dbSNP:rs2250736,g1000:0.70647,esp5400:0.650307,ExAC:0.594,clinvar:rs2250736|2,MutationTaster:1; 3 53760808 chr3:SNP:428 G A 420 off_target DP=42;DP4=14,7,18,3;AD=21,21;TYPE=SNP;DBXREF=dbSNP:rs143960825,g1000:0.00179712; 3 53766026 chr3:SNP:429 T C 2600 off_target DP=99;DP4=0,0,53,46;AD=0,99;TYPE=SNP;DBXREF=dbSNP:rs2612033,g1000:0.910942,esp5400:0.865774,ExAC:0.889; 3 53766212 chr3:SNP:430 A T 258 off_target DP=22;DP4=1,9,2,10;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs2306866,g1000:0.666334; 3 53776995 chr3:SNP:431 T C 588 off_target DP=23;DP4=0,0,14,9;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2612026,g1000:0.802915,esp5400:0.75251,ExAC:0.842; 3 53778875 chr3:SNP:432 G T 686 off_target DP=64;DP4=10,21,7,26;AD=31,33;TYPE=SNP;DBXREF=dbSNP:rs2253795,g1000:0.142572,esp5400:0.182097,ExAC:0.206; 3 53779776 chr3:SNP:433 A G 516 off_target DP=73;DP4=24,20,17,12;AD=44,29;TYPE=SNP;DBXREF=dbSNP:rs17053453,g1000:0.0710863,esp5400:0.069809,ExAC:0.074; 3 53804489 chr3:SNP:434 C T 823 . DP=57;DP4=11,9,21,16;AD=20,37;TYPE=SNP;DBXREF=dbSNP:rs17053501,g1000:0.038738,esp5400:0.043967,ExAC:0.032,clinvar:rs17053501|2; 3 53806803 chr3:SNP:435 G C 273 low_coverage;off_target DP=11;DP4=0,0,9,2;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2278517,g1000:0.545927,esp5400:0.706993; 3 53806817 chr3:SNP:436 G A 119 low_coverage;off_target DP=14;DP4=7,1,4,2;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs35146621,g1000:0.154153,esp5400:0.201896,ExAC:0.235; 3 53814197 chr3:SNP:437 G A 1848 off_target DP=72;DP4=0,0,32,39;AD=0,71;TYPE=SNP;DBXREF=dbSNP:rs1829423,g1000:0.550319,esp5400:0.665179,ExAC:0.621; 3 53856653 chr3:SNP:438 C T 482 . DP=78;DP4=22,29,14,13;AD=51,27;TYPE=SNP;DBXREF=dbSNP:rs2241808,g1000:0.442692,esp5400:0.436233,ExAC:0.503; 3 53857676 chr3:SNP:439 C T 980 . DP=81;DP4=24,11,27,19;AD=35,46;TYPE=SNP;DBXREF=dbSNP:rs17053532,g1000:0.0585064,esp5400:0.091763,ExAC:0.049; 3 53857803 chr3:SNP:440 A C 1339 . DP=145;DP4=36,42,35,32;AD=78,67;TYPE=SNP;DBXREF=dbSNP:rs12676,g1000:0.865815,esp5400:0.776821,ExAC:0.728,MutationTaster:0; 3 53858164 chr3:SNP:441 C T 152 off_target DP=21;DP4=0,13,0,8;AD=13,8;TYPE=SNP;DBXREF=dbSNP:rs2276838,g1000:0.422324; 3 53880789 chr3:SNP:442 A G 579 off_target DP=22;DP4=0,0,3,19;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2232332,g1000:0.941893; 3 53882661 chr3:SNP:443 A G 710 off_target DP=65;DP4=16,15,16,18;AD=31,34;TYPE=SNP;DBXREF=dbSNP:rs2232333,g1000:0.115615,esp5400:0.228202,ExAC:0.224; 3 53882663 chr3:SNP:444 G A 641 off_target DP=71;DP4=16,22,19,14;AD=38,33;TYPE=SNP;DBXREF=dbSNP:rs1025690,g1000:0.824281,esp5400:0.746235,ExAC:0.732; 3 53882673 chr3:INDEL:20 GTTTTTT GTTTTTTT 463 off_target DP=97;DP4=11,10,31,39;AD=21,70;TYPE=INDEL;DBXREF=dbSNP:rs5849009,g1000:0.941494,ExAC:0.957; 3 53882903 chr3:SNP:445 G C 141 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2276839,g1000:0.16853; 3 53883722 chr3:SNP:446 C G 760 . DP=89;DP4=29,19,29,12;AD=48,41;TYPE=SNP;DBXREF=dbSNP:rs1025689,g1000:0.430112,esp5400:0.474624,ExAC:0.565; 3 53883910 chr3:SNP:447 C T 246 off_target DP=26;DP4=0,14,0,12;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs4687751,g1000:0.51238; 3 53886912 chr3:SNP:448 C T 494 . DP=49;DP4=18,7,18,6;AD=25,24;TYPE=SNP;DBXREF=dbSNP:rs3733075,g1000:0.429313,esp5400:0.354248,ExAC:0.367; 3 53890787 chr3:SNP:449 G A 302 low_coverage;off_target DP=16;DP4=4,0,12,0;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs3821867,g1000:0.66853; 3 53891097 chr3:SNP:450 C G 147 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2276840,g1000:0.387979; 3 53892641 chr3:SNP:451 T G 248 off_target DP=22;DP4=11,0,11,0;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs9840079,g1000:0.686901; 3 54157710 chr3:SNP:452 A T 639 off_target DP=25;DP4=0,0,1,24;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs2290132,g1000:0.25619; 3 54354510 chr3:SNP:453 T C 1659 . DP=65;DP4=0,0,33,32;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs9879885,g1000:0.653355,esp5400:0.720576,ExAC:0.647; 3 54354624 chr3:SNP:454 C T 307 off_target DP=21;DP4=3,4,7,7;AD=7,14;TYPE=SNP;DBXREF=dbSNP:rs150510815,g1000:0.0101837,esp5400:0.030074,ExAC:0.011; 3 54604188 chr3:SNP:455 T C 876 off_target DP=78;DP4=7,28,8,35;AD=35,43;TYPE=SNP;DBXREF=dbSNP:rs2251788,g1000:0.520567; 3 54798258 chr3:SNP:456 G A 513 . DP=43;DP4=10,9,11,13;AD=19,24;TYPE=SNP;DBXREF=dbSNP:rs3732748,g1000:0.391973,esp5400:0.393696,ExAC:0.462; 3 54914996 chr3:SNP:457 A G 115 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs9866865,g1000:0.120607; 3 54919272 chr3:SNP:458 A G 948 off_target DP=35;DP4=0,0,21,14;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs1405330,g1000:0.851837,esp5400:0.76503,ExAC:0.759; 3 54919351 chr3:SNP:459 A G 977 . DP=76;DP4=21,11,29,15;AD=32,44;TYPE=SNP;DBXREF=dbSNP:rs10510774,g1000:0.0567093,esp5400:0.114147,ExAC:0.102; 3 54919480 chr3:SNP:460 G A 311 off_target DP=41;DP4=5,20,3,13;AD=25,16;TYPE=SNP;DBXREF=dbSNP:rs2293662,g1000:0.122404,esp5400:0.134927,ExAC:0.124; 3 54930699 chr3:SNP:461 A T 240 off_target DP=25;DP4=11,2,12,0;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs6445708,g1000:0.132188; 3 54930794 chr3:SNP:462 C T 849 . DP=80;DP4=22,17,22,19;AD=39,41;TYPE=SNP;DBXREF=dbSNP:rs17054524,g1000:0.117812,esp5400:0.133773,ExAC:0.122; 3 54933763 chr3:SNP:463 G A 710 off_target DP=50;DP4=15,3,25,7;AD=18,32;TYPE=SNP;DBXREF=dbSNP:rs41277455,g1000:0.107228,esp5400:0.117192; 3 55018520 chr3:SNP:464 T C 126 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs2360664,g1000:0.327077; 3 55018619 chr3:INDEL:21 T TG 228 off_target DP=37;DP4=9,9,8,6;AD=18,14;TYPE=INDEL;DBXREF=dbSNP:rs56055307,g1000:0.206669,ExAC:0.152; 3 55021556 chr3:SNP:465 G C 152 low_coverage;off_target DP=15;DP4=8,0,7,0;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs2280186,g1000:0.334864; 3 55038898 chr3:SNP:466 A G 867 off_target DP=32;DP4=0,0,10,22;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs4955827,g1000:0.987819,esp5400:0.975321,ExAC:0.977; 3 55041723 chr3:SNP:467 G T 245 low_coverage;off_target DP=16;DP4=5,0,9,2;AD=5,11;TYPE=SNP;DBXREF=dbSNP:rs2280187,g1000:0.138379; 3 55043613 chr3:SNP:468 G C 352 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs3773570,g1000:0.64976; 3 55107944 chr3:SNP:469 A G 354 off_target DP=44;DP4=8,18,7,11;AD=26,18;TYPE=SNP;DBXREF=dbSNP:rs17323097,g1000:0.0710863,esp5400:0.12616; 3 55107996 chr3:INDEL:22 TTTCA T 268 off_target DP=25;DP4=4,8,5,7;AD=12,12;TYPE=INDEL;DBXREF=dbSNP:rs111833275,g1000:0.0766773; 3 55108055 chr3:SNP:470 G A 488 low_coverage;off_target DP=18;DP4=0,0,8,10;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs358076,g1000:0.840855; 3 55108064 chr3:SNP:471 G C 198 off_target DP=22;DP4=7,5,6,4;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs41277463,g1000:0.0734824; 3 55108149 chr3:SNP:472 A G 319 . DP=43;DP4=16,10,11,6;AD=26,17;TYPE=SNP;DBXREF=dbSNP:rs17054785,g1000:0.100839,esp5400:0.151984,ExAC:0.122; 3 55108188 chr3:SNP:473 A G 691 . DP=62;DP4=15,15,17,15;AD=30,32;TYPE=SNP;DBXREF=dbSNP:rs35471424,g1000:0.0876597,esp5400:0.137351,ExAC:0.123; 3 55108234 chr3:INDEL:23 CACTGACTGAGATGTTCTCTT C 405 . DP=73;DP4=24,28,9,12;AD=52,21;TYPE=INDEL;DBXREF=dbSNP:rs796417435,g1000:0.133387; 3 55108358 chr3:SNP:474 A G 158 low_coverage;off_target DP=13;DP4=0,6,1,6;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs358077,g1000:0.0599042; 3 55508644 chr3:SNP:475 C A 401 . DP=36;DP4=1,16,3,16;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs147104982,g1000:0.014377,esp5400:0.030601,ExAC:0.014,clinvar:rs147104982|2; 3 55514766 chr3:SNP:476 A T 658 off_target DP=25;DP4=0,0,24,1;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs73075443,g1000:0.108427,esp5400:0.127167,ExAC:0.091; 3 57569876 chr3:SNP:477 G A 153 low_coverage;off_target DP=8;DP4=0,2,1,5;AD=2,6;TYPE=SNP;DBXREF=dbSNP:rs541710360; 3 57994719 chr3:SNP:478 T A 1175 off_target DP=45;DP4=0,1,1,43;AD=1,44;TYPE=SNP;DBXREF=dbSNP:rs1658338,g1000:0.857228; 3 58080505 chr3:SNP:479 G T 188 low_coverage;off_target DP=14;DP4=5,1,6,2;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs7644723,g1000:0.609824; 3 58081888 chr3:SNP:480 T C 983 . DP=106;DP4=25,31,18,31;AD=56,49;TYPE=SNP;DBXREF=dbSNP:rs1522384,g1000:0.641973,esp5400:0.397565,ExAC:0.464,clinvar:rs1522384|2; 3 58112440 chr3:SNP:481 A G 333 . DP=41;DP4=10,13,8,10;AD=23,18;TYPE=SNP;DBXREF=dbSNP:rs2362903,g1000:0.833267,esp5400:0.730433,ExAC:0.708,clinvar:rs2362903|2; 3 58121626 chr3:SNP:482 T A 174 low_coverage;off_target DP=13;DP4=5,0,8,0;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs6445948,g1000:0.829073; 3 58129450 chr3:SNP:483 A G 458 off_target DP=26;DP4=0,6,5,15;AD=6,20;TYPE=SNP;DBXREF=dbSNP:rs9826147,g1000:0.220847; 3 58133799 chr3:SNP:484 G C 215 off_target DP=29;DP4=17,1,10,1;AD=18,11;TYPE=SNP;DBXREF=dbSNP:rs190226890,g1000:0.0357428; 3 58145263 chr3:SNP:485 G A 630 off_target DP=66;DP4=22,11,22,11;AD=33,33;TYPE=SNP;DBXREF=dbSNP:rs12634123,g1000:0.748602,esp5400:0.63153,ExAC:0.67,clinvar:rs12634123|2; 3 58179318 chr3:SNP:486 C T 111 off_target DP=21;DP4=0,15,0,6;AD=15,6;TYPE=SNP;DBXREF=dbSNP:rs9812109,g1000:0.850439; 3 58196583 chr3:SNP:487 G A 570 . DP=59;DP4=13,18,12,16;AD=31,28;TYPE=SNP;DBXREF=dbSNP:rs34252389,g1000:0.0133786,esp5400:0.023703,ExAC:0.029; 3 58413465 chr3:SNP:488 G C 457 . DP=49;DP4=16,9,19,5;AD=25,24;TYPE=SNP;DBXREF=dbSNP:rs7231,g1000:0.741813,ExAC:0.726; 3 58416538 chr3:SNP:489 T C 2090 . DP=79;DP4=0,0,34,44;AD=0,78;TYPE=SNP;DBXREF=dbSNP:rs4264746,g1000:0.984824,esp5400:0.978528,ExAC:0.995,clinvar:rs4264746|; 3 63981635 chr3:SNP:490 C T 228 low_coverage DP=17;DP4=4,3,2,8;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs3733125,g1000:0.0904553,esp5400:0.07533,ExAC:0.096,clinvar:rs3733125|3; 3 63982082 chr3:SNP:491 G A 176 low_coverage DP=16;DP4=2,6,2,6;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs3774729,g1000:0.4377,esp5400:0.393986,ExAC:0.347,clinvar:rs3774729|3,MutationTaster:0.001; 3 64133350 chr3:SNP:492 A G 2992 . DP=114;DP4=0,0,39,75;AD=0,114;TYPE=SNP;DBXREF=dbSNP:rs27673,g1000:0.983826,esp5400:0.984198,ExAC:0.994,clinvar:rs27673|3; 3 64138716 chr3:SNP:493 A G 189 low_coverage;off_target DP=9;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs35843,g1000:0.938698; 3 64142859 chr3:SNP:494 C T 697 . DP=60;DP4=19,9,27,5;AD=28,32;TYPE=SNP;DBXREF=dbSNP:rs17720698,g1000:0.184904,esp5400:0.244469,ExAC:0.202,clinvar:rs17720698|255; 3 64145493 chr3:SNP:495 G A 247 off_target DP=20;DP4=5,3,8,4;AD=8,12;TYPE=SNP;DBXREF=dbSNP:rs11720610,g1000:0.300519; 3 64145510 chr3:SNP:496 G A 506 off_target DP=40;DP4=11,5,15,9;AD=16,24;TYPE=SNP;DBXREF=dbSNP:rs76720468,g1000:0.0890575; 3 64145759 chr3:SNP:497 T C 1020 . DP=90;DP4=14,26,14,36;AD=40,50;TYPE=SNP;DBXREF=dbSNP:rs2306380,g1000:0.302316,esp5400:0.357037,ExAC:0.335,clinvar:rs2306380|3; 3 69104695 chr3:SNP:498 T A 1083 off_target DP=40;DP4=0,0,19,21;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs6549179,g1000:0.954273,esp5400:0.972553,ExAC:0.986; 3 69104752 chr3:SNP:499 C T 818 off_target DP=33;DP4=0,0,16,17;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs6549180,g1000:0.954273; 3 69111488 chr3:SNP:500 A T 186 low_coverage;off_target DP=13;DP4=0,5,0,8;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs6800465,g1000:0.606829; 3 71015021 chr3:SNP:501 G T 1022 off_target DP=40;DP4=0,0,28,12;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs7638391,g1000:0.974641,esp5400:0.940602,ExAC:0.945,clinvar:rs7638391|2; 3 71247572 chr3:SNP:502 A T 118 low_coverage;off_target DP=8;DP4=0,3,3,2;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs56850311,g1000:0.26258,esp5400:0.271125,ExAC:0.26; 3 77600273 chr3:SNP:503 C A 241 off_target DP=35;DP4=6,16,3,10;AD=22,13;TYPE=SNP;DBXREF=dbSNP:rs3796291,g1000:0.567292; 3 77600326 chr3:SNP:504 C T 224 low_coverage;off_target DP=16;DP4=0,6,0,10;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs3796292,g1000:0.567292; 3 77645984 chr3:SNP:505 A G 302 off_target DP=25;DP4=1,10,0,14;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs775718,g1000:0.60024; 3 77671721 chr3:SNP:506 C A 195 low_coverage;off_target DP=13;DP4=0,4,2,7;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs2272163,g1000:0.388578; 3 77684163 chr3:SNP:507 A G 1021 . DP=121;DP4=26,42,17,35;AD=68,52;TYPE=SNP;DBXREF=dbSNP:rs372349866,esp5400:0.000199,ExAC:2.481e-05,MutationTaster:0.352; 3 77684222 chr3:SNP:508 C T 1409 off_target DP=107;DP4=12,30,19,46;AD=42,65;TYPE=SNP;DBXREF=dbSNP:rs3821735,g1000:0.159345,esp5400:0.110978,ExAC:0.084; 3 78664011 chr3:SNP:509 G T 244 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3732661,g1000:0.215855; 3 78700779 chr3:SNP:510 C A 298 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs3925684,g1000:0.970048; 3 78701217 chr3:SNP:511 A G 230 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs7619956,g1000:0.880791; 3 81626909 chr3:SNP:512 C T 166 low_coverage;off_target DP=12;DP4=5,0,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs6548770,g1000:0.722843; 3 81630269 chr3:INDEL:24 AAG A 138 off_target DP=48;DP4=24,16,6,2;AD=40,8;TYPE=INDEL;DBXREF=dbSNP:rs555859246,g1000:0.00479233,ExAC:0.02; 3 81643167 chr3:SNP:513 T C 1047 . DP=41;DP4=0,0,17,24;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs2172397,g1000:0.983626,esp5400:0.980359,ExAC:0.969,MutationTaster:0.001; 3 81698130 chr3:SNP:514 T C 869 . DP=33;DP4=0,0,10,23;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2229519,g1000:0.321486,esp5400:0.292242,ExAC:0.307,clinvar:rs2229519|2,MutationTaster:0.577; 3 81810702 chr3:INDEL:25 AGG AGGG 202 off_target DP=21;DP4=1,1,6,12;AD=2,18;TYPE=INDEL;DBXREF=dbSNP:rs11391701,g1000:0.996805,ExAC:0.999; 3 81810725 chr3:SNP:515 C T 198 low_coverage;off_target DP=8;DP4=0,0,6,2;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2290081,g1000:0.420927,ExAC:0.329; 3 87295049 chr3:SNP:516 T C 216 low_coverage DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs11540913,g1000:0.815695,esp5400:0.81623,ExAC:0.905,clinvar:rs11540913|1|2; 3 87313353 chr3:SNP:517 C T 1245 off_target DP=46;DP4=0,0,42,4;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs4988462,g1000:0.236821; 3 89456555 chr3:SNP:518 T A 226 off_target DP=31;DP4=3,16,6,6;AD=19,12;TYPE=SNP;DBXREF=dbSNP:rs3792572,g1000:0.404952,esp5400:0.471556,ExAC:0.387; 3 89480265 chr3:SNP:519 A G 578 off_target DP=77;DP4=29,17,20,11;AD=46,31;TYPE=SNP;DBXREF=dbSNP:rs12639506,g1000:0.135184,esp5400:0.182875,ExAC:0.202; 3 89521509 chr3:SNP:520 C A 128 low_coverage;off_target DP=14;DP4=8,0,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs73139110,g1000:0.129593; 3 89521602 chr3:INDEL:26 T TC 432 off_target DP=59;DP4=16,13,12,12;AD=29,24;TYPE=INDEL;DBXREF=dbSNP:rs112297761,g1000:0.161542,ExAC:0.211; 3 89521693 chr3:SNP:521 T C 753 . DP=85;DP4=28,18,22,17;AD=46,39;TYPE=SNP;DBXREF=dbSNP:rs35124509,g1000:0.391174,esp5400:0.468117,ExAC:0.376,MutationTaster:1; 3 89521725 chr3:SNP:522 T C 817 . DP=89;DP4=29,17,27,15;AD=46,42;TYPE=SNP;DBXREF=dbSNP:rs1054750,g1000:0.129593,esp5400:0.186187,ExAC:0.2; 3 89521820 chr3:INDEL:27 TTG T 312 off_target DP=73;DP4=25,29,3,14;AD=54,17;TYPE=INDEL;DBXREF=dbSNP:rs570994224,g1000:0.21226; 3 89521825 chr3:INDEL:28 TTGACATGAAA T 352 off_target DP=60;DP4=16,26,3,15;AD=42,18;TYPE=INDEL; 3 89521838 chr3:SNP:523 T A 278 off_target DP=40;DP4=4,21,2,13;AD=25,15;TYPE=SNP; 3 89521840 chr3:SNP:524 T A 345 off_target DP=43;DP4=4,22,3,14;AD=26,17;TYPE=SNP; 3 89521841 chr3:SNP:525 G T 318 off_target DP=44;DP4=4,24,3,13;AD=28,16;TYPE=SNP; 3 89521900 chr3:SNP:526 G T 331 off_target DP=28;DP4=0,13,0,15;AD=13,15;TYPE=SNP;DBXREF=dbSNP:rs73139115,g1000:0.129593; 3 89521965 chr3:SNP:527 T G 145 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs73139117,g1000:0.129593; 3 89528461 chr3:SNP:528 A T 380 off_target DP=30;DP4=13,0,16,1;AD=13,17;TYPE=SNP;DBXREF=dbSNP:rs12631313,g1000:0.165136; 3 89528477 chr3:SNP:529 G A 388 off_target DP=36;DP4=16,2,16,2;AD=18,18;TYPE=SNP;DBXREF=dbSNP:rs12636710,g1000:0.132188; 3 93593119 chr3:SNP:530 T C 862 . DP=77;DP4=16,19,23,19;AD=35,42;TYPE=SNP;DBXREF=dbSNP:rs6123,g1000:0.385184,esp5400:0.317032,ExAC:0.426,clinvar:rs6123|2; 3 93605126 chr3:SNP:531 A G 342 off_target DP=40;DP4=15,8,11,6;AD=23,17;TYPE=SNP;DBXREF=dbSNP:rs8178649,g1000:0.116014; 3 93617433 chr3:SNP:532 C T 837 off_target DP=97;DP4=21,34,14,28;AD=55,42;TYPE=SNP;DBXREF=dbSNP:rs78230833,g1000:0.00139776,esp5400:0.002789,ExAC:0.003814; 3 93646396 chr3:SNP:533 C T 110 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs8178610,g1000:0.367812; 3 97487239 chr3:SNP:534 C T 102 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs1567058,g1000:0.791534; 3 100015146 chr3:SNP:535 G T 683 off_target DP=25;DP4=0,0,11,14;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs3772698,g1000:0.516573,esp5400:0.501863,ExAC:0.547; 3 100015166 chr3:SNP:536 C T 359 off_target DP=23;DP4=3,4,10,6;AD=7,16;TYPE=SNP;DBXREF=dbSNP:rs3772697,g1000:0.273163,esp5400:0.176723,ExAC:0.265; 3 100029173 chr3:SNP:537 A G 235 off_target DP=32;DP4=20,0,12,0;AD=20,12;TYPE=SNP;DBXREF=dbSNP:rs4928168,g1000:0.300319; 3 100030628 chr3:INDEL:29 ATTTTTTTT ATTTTTTTTT 118 off_target DP=69;DP4=19,17,16,17;AD=36,33;TYPE=INDEL;DBXREF=dbSNP:rs3217495,g1000:0.276558,ExAC:0.221; 3 100034849 chr3:SNP:538 A T 683 off_target DP=25;DP4=0,0,22,3;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs4928169,g1000:0.516773; 3 100037795 chr3:SNP:539 G C 438 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs1214369,g1000:0.754792; 3 100473505 chr3:SNP:540 C T 1776 . DP=67;DP4=0,0,38,29;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs10936352,g1000:0.290935,esp5400:0.31422,ExAC:0.328,MutationTaster:1; 3 100493422 chr3:SNP:541 G A 366 off_target DP=27;DP4=9,2,13,3;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs9846590,g1000:0.0984425,esp5400:0.137385,ExAC:0.088; 3 100493607 chr3:SNP:542 T C 322 off_target DP=33;DP4=0,17,2,14;AD=17,16;TYPE=SNP;DBXREF=dbSNP:rs3736534,g1000:0.315895; 3 100497098 chr3:SNP:543 C T 535 off_target DP=55;DP4=16,13,14,12;AD=29,26;TYPE=SNP;DBXREF=dbSNP:rs9877951,g1000:0.0932508,esp5400:0.133206,ExAC:0.111; 3 100508189 chr3:SNP:544 A G 341 off_target DP=26;DP4=11,0,15,0;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs35476532,g1000:0.0245607; 3 100511379 chr3:SNP:545 G A 266 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs989794,g1000:0.48103; 3 100511428 chr3:SNP:546 G A 292 low_coverage;off_target DP=11;DP4=0,0,10,1;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs989793,g1000:0.48103; 3 100511446 chr3:SNP:547 T A 412 low_coverage;off_target DP=16;DP4=0,0,15,1;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs989795,g1000:0.481829; 3 100514067 chr3:SNP:548 C T 301 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs754462,g1000:0.354832; 3 100565031 chr3:SNP:549 G C 258 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6774830,g1000:0.655152; 3 100566571 chr3:SNP:550 A G 751 off_target DP=63;DP4=7,20,12,24;AD=27,36;TYPE=SNP;DBXREF=dbSNP:rs3806656,g1000:0.160343,esp5400:0.137291; 3 100567592 chr3:SNP:551 T C 421 off_target DP=46;DP4=17,7,13,9;AD=24,22;TYPE=SNP;DBXREF=dbSNP:rs6773877,g1000:0.317692,esp5400:0.320346; 3 100567811 chr3:SNP:552 A T 117 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs6771476,g1000:0.26857; 3 100570907 chr3:SNP:553 A G 199 low_coverage;off_target DP=18;DP4=0,9,0,9;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs1966047,g1000:0.674121; 3 100570929 chr3:SNP:554 G A 165 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs62277065,g1000:0.201278; 3 100594326 chr3:INDEL:30 CGGCATA C 564 off_target DP=71;DP4=25,18,19,8;AD=43,27;TYPE=INDEL;DBXREF=dbSNP:rs3839090,g1000:0.529553,ExAC:0.581; 3 100604687 chr3:SNP:555 T G 128 low_coverage;off_target DP=11;DP4=0,5,1,5;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs6786325,g1000:0.670927; 3 100605206 chr3:SNP:556 A G 696 off_target DP=27;DP4=0,0,6,21;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs1987384,g1000:0.728634,esp5400:0.771928,ExAC:0.785; 3 100617680 chr3:SNP:557 C T 2642 . DP=97;DP4=0,0,49,48;AD=0,97;TYPE=SNP;DBXREF=dbSNP:rs2245370,g1000:0.728035,esp5400:0.563706,ExAC:0.617; 3 100621426 chr3:SNP:558 C A 528 off_target DP=22;DP4=1,0,15,6;AD=1,21;TYPE=SNP;DBXREF=dbSNP:rs2576365,g1000:0.882588,esp5400:0.832464,ExAC:0.875; 3 100712059 chr3:SNP:559 G A 216 low_coverage;off_target DP=19;DP4=9,0,8,2;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs3732896,g1000:0.236022; 3 100712249 chr3:SNP:560 T C 571 . DP=62;DP4=14,19,12,17;AD=33,29;TYPE=SNP;DBXREF=dbSNP:rs3732895,g1000:0.239417,esp5400:0.146369,ExAC:0.117,MutationTaster:1; 3 100949842 chr3:SNP:561 G A 568 . DP=62;DP4=19,15,17,11;AD=34,28;TYPE=SNP;DBXREF=dbSNP:rs348867,g1000:0.812899,esp5400:0.796709,ExAC:0.791; 3 100994377 chr3:SNP:562 T C 255 low_coverage;off_target DP=12;DP4=2,0,9,1;AD=2,10;TYPE=SNP;DBXREF=dbSNP:rs2271972,g1000:0.133586; 3 101022876 chr3:SNP:563 T C 109 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs62282886,g1000:0.134385; 3 101038339 chr3:SNP:564 G A 283 off_target DP=21;DP4=9,0,12,0;AD=9,12;TYPE=SNP;DBXREF=dbSNP:rs546090,g1000:0.744609; 3 101039107 chr3:SNP:565 A C 512 off_target DP=49;DP4=16,7,20,6;AD=23,26;TYPE=SNP;DBXREF=dbSNP:rs573908,g1000:0.738219,esp5400:0.699198,ExAC:0.773; 3 105238890 chr3:INDEL:31 CTTTTTTTTTTT CTTTTTTTTTT 128 homopolymer_region DP=38;DP4=4,1,18,14;AD=5,32;TYPE=INDEL;DBXREF=dbSNP:rs11291806,g1000:0.758187,ExAC:0.709; 3 105238901 chr3:SNP:566 T C 318 . DP=30;DP4=6,6,10,7;AD=12,17;TYPE=SNP;DBXREF=dbSNP:rs2291376,g1000:0.429513,esp5400:0.055679,ExAC:0.367; 3 105243389 chr3:SNP:567 T C 1308 off_target DP=87;DP4=10,19,18,40;AD=29,58;TYPE=SNP;DBXREF=dbSNP:rs9875739,g1000:0.124601,esp5400:0.105875,ExAC:0.096; 3 105252377 chr3:SNP:568 G C 309 off_target DP=38;DP4=12,10,14,2;AD=22,16;TYPE=SNP;DBXREF=dbSNP:rs2171146,g1000:0.547724; 3 105260518 chr3:SNP:569 G A 497 . DP=62;DP4=20,16,15,11;AD=36,26;TYPE=SNP;DBXREF=dbSNP:rs579565,g1000:0.236821,esp5400:0.242796,ExAC:0.219; 3 105260596 chr3:SNP:570 T C 1538 . DP=58;DP4=0,0,29,29;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs599278,g1000:0.960863,esp5400:0.96003,ExAC:0.989; 3 105389153 chr3:SNP:571 A G 10000 . DP=131;DP4=2,0,74,55;AD=2,129;TYPE=SNP;DBXREF=dbSNP:rs11713094,g1000:0.211062,esp5400:0.207381,ExAC:0.218; 3 105412286 chr3:INDEL:32 CT CTTT 955 off_target DP=34;DP4=1,0,25,4;AD=1,29;TYPE=INDEL;DBXREF=dbSNP:rs10635036,g1000:0.996406; 3 105423088 chr3:SNP:572 T C 355 low_coverage;off_target DP=13;DP4=0,0,2,11;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1548056,g1000:0.984824; 3 105438806 chr3:SNP:573 G A 492 low_coverage;off_target DP=18;DP4=0,0,18,0;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs7624400,g1000:0.804912; 3 105438957 chr3:SNP:574 T G 2522 . DP=97;DP4=1,0,51,45;AD=1,96;TYPE=SNP;DBXREF=dbSNP:rs2305036,g1000:0.210264,esp5400:0.202361,ExAC:0.22; 3 105439026 chr3:SNP:575 G A 2495 . DP=96;DP4=0,1,40,55;AD=1,95;TYPE=SNP;DBXREF=dbSNP:rs2305035,g1000:0.210064,esp5400:0.202454,ExAC:0.219; 3 105453034 chr3:SNP:576 A G 683 off_target DP=25;DP4=0,0,4,21;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs6768096,g1000:0.984625,esp5400:0.984848,ExAC:0.996; 3 105495432 chr3:SNP:577 G T 464 low_coverage;off_target DP=18;DP4=0,0,1,17;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs9809911,g1000:0.984425,esp5400:0.98522,ExAC:0.996; 3 105586538 chr3:SNP:578 G A 796 off_target DP=30;DP4=0,0,0,30;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2221379,g1000:0.978834; 3 108103427 chr3:SNP:579 A C 611 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2290600,g1000:0.456669; 3 108103433 chr3:SNP:580 T C 611 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs3860537,g1000:0.91274; 3 108107704 chr3:SNP:581 C T 328 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1463431,g1000:0.790535; 3 108135609 chr3:SNP:582 A T 398 low_coverage;off_target DP=15;DP4=0,0,13,2;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs116262927,g1000:0.911142,ExAC:0.912; 3 108140148 chr3:SNP:583 A G 465 low_coverage;off_target DP=17;DP4=0,0,1,16;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs4593038,g1000:0.999601; 3 108147295 chr3:SNP:584 C A 574 off_target DP=21;DP4=0,0,13,8;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1350235,g1000:0.739217,esp5400:0.852881,ExAC:0.797; 3 108156633 chr3:INDEL:33 A AAAAG 251 low_coverage;off_target DP=14;DP4=0,3,1,9;AD=3,10;TYPE=INDEL;DBXREF=dbSNP:rs113832514,g1000:0.83726; 3 108158574 chr3:SNP:585 C T 2832 . DP=107;DP4=0,0,64,43;AD=0,107;TYPE=SNP;DBXREF=dbSNP:rs3996040,g1000:0.600639,esp5400:0.777361,ExAC:0.696; 3 108163303 chr3:SNP:586 C T 222 low_coverage;off_target DP=10;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs3996017,g1000:0.719649; 3 108172817 chr3:SNP:587 C T 982 off_target DP=37;DP4=0,0,31,6;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs6437783,g1000:0.556909,esp5400:0.778265,ExAC:0.683; 3 108188993 chr3:SNP:588 G A 2757 . DP=103;DP4=0,1,49,53;AD=1,102;TYPE=SNP;DBXREF=dbSNP:rs9868484,g1000:0.516374,esp5400:0.714541,ExAC:0.615,MutationTaster:0.971; 3 108189735 chr3:SNP:589 T C 531 off_target DP=20;DP4=0,0,6,14;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs73850899,g1000:0.161542,esp5400:0.160845,ExAC:0.158; 3 108189750 chr3:SNP:590 C T 464 low_coverage;off_target DP=18;DP4=0,0,3,15;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs12495639,g1000:0.999401; 3 108214537 chr3:SNP:591 T G 398 low_coverage;off_target DP=15;DP4=0,0,15,0;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2603140,g1000:0.999401; 3 108229171 chr3:SNP:592 T C 266 low_coverage;off_target DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2249886,g1000:0.999601; 3 110791113 chr3:SNP:593 A G 644 off_target DP=25;DP4=0,0,7,18;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs4682228,g1000:0.973442; 3 111260975 chr3:SNP:594 C T 120 low_coverage;off_target DP=14;DP4=8,0,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs2276873,g1000:0.458866; 3 111356083 chr3:SNP:595 G C 1236 . DP=48;DP4=0,0,17,31;AD=0,48;TYPE=SNP;DBXREF=dbSNP:rs1533270,g1000:0.996605,esp5400:0.99498,ExAC:0.999; 3 112184927 chr3:SNP:596 A G 823 off_target DP=31;DP4=0,0,21,10;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2171513,g1000:0.684305,esp5400:0.750604,ExAC:0.856; 3 112185025 chr3:SNP:597 G A 1963 . DP=72;DP4=0,0,48,24;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs9288952,g1000:0.644569,esp5400:0.726901,ExAC:0.833,MutationTaster:0; 3 112190137 chr3:SNP:598 G T 953 . DP=37;DP4=0,0,20,17;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2931761,g1000:0.988219,esp5400:0.990612,ExAC:0.997,MutationTaster:0; 3 113858350 chr3:SNP:599 C T 1405 . DP=53;DP4=0,0,38,15;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs2251177,g1000:0.957867,esp5400:0.95501,ExAC:0.985; 3 113890815 chr3:SNP:600 C T 1335 . DP=52;DP4=0,1,23,28;AD=1,51;TYPE=SNP;DBXREF=dbSNP:rs6280,g1000:0.513578,esp5400:0.533296,ExAC:0.585,clinvar:rs6280|255|255,MutationTaster:0; 3 115382655 chr3:SNP:601 C T 938 . DP=82;DP4=28,11,31,12;AD=39,43;TYPE=SNP;DBXREF=dbSNP:rs28399377,g1000:0.0535144,esp5400:0.028757,ExAC:0.038; 3 115394705 chr3:SNP:602 T C 383 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs982206,g1000:0.850839; 3 115395321 chr3:SNP:603 G A 708 . DP=68;DP4=15,17,14,20;AD=32,34;TYPE=SNP;DBXREF=dbSNP:rs6292,g1000:0.0417332,esp5400:0.031622,ExAC:0.031; 3 119013714 chr3:SNP:604 C A 1716 off_target DP=68;DP4=1,1,45,21;AD=2,66;TYPE=SNP;DBXREF=dbSNP:rs72960626,g1000:0.104233,esp5400:0.072013,ExAC:0.082; 3 119013928 chr3:SNP:605 A T 1095 off_target DP=39;DP4=0,0,0,39;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs3732412,g1000:0.450679; 3 119084331 chr3:SNP:606 A G 774 off_target DP=31;DP4=0,0,5,26;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs17203055,g1000:0.0842652; 3 119101885 chr3:SNP:607 T G 188 low_variant_fraction;off_target DP=71;DP4=24,12,12,1;AD=36,13;TYPE=SNP; 3 119101885 chr3:INDEL:34 T TTG 580 off_target DP=90;DP4=26,20,17,12;AD=46,29;TYPE=INDEL;DBXREF=dbSNP:rs147532572,g1000:0.0593051,ExAC:0.076; 3 119101925 chr3:SNP:608 C T 976 . DP=103;DP4=33,22,32,16;AD=55,48;TYPE=SNP;DBXREF=dbSNP:rs16829782,g1000:0.0579073,esp5400:0.062098,ExAC:0.075; 3 119118104 chr3:SNP:609 A G 1133 . DP=44;DP4=0,0,25,19;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs4688001,g1000:1,ExAC:1; 3 119501580 chr3:INDEL:35 GCCCCC GCCCCCC 723 off_target DP=100;DP4=6,5,40,45;AD=11,85;TYPE=INDEL;DBXREF=dbSNP:rs3841391,g1000:0.321885,ExAC:0.368; 3 119501780 chr3:SNP:610 G A 1167 off_target DP=44;DP4=0,0,14,30;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2472668,g1000:0.883786; 3 119501798 chr3:SNP:611 T A 982 off_target DP=37;DP4=0,0,9,28;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2461831,g1000:0.979832; 3 119529113 chr3:SNP:612 G T 335 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs3732356,g1000:0.850839; 3 119533773 chr3:SNP:613 T C 292 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6797879,g1000:0.892772; 3 119533910 chr3:SNP:614 T C 2436 . DP=92;DP4=0,0,58,34;AD=0,92;TYPE=SNP;DBXREF=dbSNP:rs4058490,g1000:0.999401,esp5400:0.999628,ExAC:1; 3 119534153 chr3:SNP:615 C T 820 off_target DP=84;DP4=17,27,21,19;AD=44,40;TYPE=SNP;DBXREF=dbSNP:rs2276707,g1000:0.319688,esp5400:0.244841,ExAC:0.244; 3 119535795 chr3:SNP:616 C G 242 low_coverage;off_target DP=16;DP4=6,0,9,1;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs11929668,g1000:0.105032; 3 119595503 chr3:SNP:617 A G 328 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1719895,g1000:0.883387; 3 119721171 chr3:SNP:618 T C 310 off_target DP=25;DP4=2,8,5,10;AD=10,15;TYPE=SNP;DBXREF=dbSNP:rs12108149,g1000:0.307109; 3 120369575 chr3:SNP:619 T G 199 low_coverage;off_target DP=18;DP4=7,2,4,5;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs3817627,g1000:0.603435,esp5400:0.568372,ExAC:0.656; 3 120371369 chr3:SNP:620 G A 238 low_coverage;off_target DP=17;DP4=6,0,8,2;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs1054095,g1000:0.298922,esp5400:0.200062; 3 120371414 chr3:SNP:621 G A 1458 off_target DP=55;DP4=0,0,38,17;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs2551607,g1000:0.83107,esp5400:0.809767,ExAC:0.889; 3 120389316 chr3:SNP:622 T A 1836 . DP=75;DP4=3,2,33,37;AD=5,70;TYPE=SNP;DBXREF=dbSNP:rs2255543,g1000:0.731629,esp5400:0.744837,ExAC:0.735,clinvar:rs2255543|2,MutationTaster:0; 3 120389491 chr3:SNP:623 A G 328 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs17140269,g1000:0.42512; 3 120394052 chr3:SNP:624 A T 451 low_coverage;off_target DP=17;DP4=0,0,1,16;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2042482,g1000:0.73103; 3 120394521 chr3:SNP:625 T C 192 low_coverage;off_target DP=18;DP4=9,0,9,0;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs17140396,g1000:0.211062; 3 120394604 chr3:SNP:626 T A 233 off_target DP=25;DP4=9,4,9,3;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs2733825,g1000:0.111422,esp5400:0.139349,ExAC:0.158; 3 120394885 chr3:SNP:627 G C 197 low_coverage;off_target DP=9;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs17140398,g1000:0.408946; 3 121350966 chr3:SNP:628 C G 1061 . DP=40;DP4=0,0,21,19;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs9869984,g1000:0.995407,esp5400:0.995817,ExAC:0.999,MutationTaster:0; 3 121351338 chr3:SNP:629 C T 523 . DP=32;DP4=5,5,8,14;AD=10,22;TYPE=SNP;DBXREF=dbSNP:rs2070180,g1000:0.146366,esp5400:0.236754,ExAC:0.216,MutationTaster:0.02; 3 121353254 chr3:SNP:630 T C 2198 . DP=83;DP4=0,0,28,55;AD=0,83;TYPE=SNP;DBXREF=dbSNP:rs2070179,g1000:0.651558,esp5400:0.712493,ExAC:0.699,MutationTaster:0.001; 3 121353291 chr3:SNP:631 G A 407 off_target DP=45;DP4=5,18,3,19;AD=23,22;TYPE=SNP;DBXREF=dbSNP:rs34667636,g1000:0.147764,esp5400:0.233501,ExAC:0.216; 3 121354583 chr3:SNP:632 G A 622 . DP=54;DP4=12,12,14,16;AD=24,30;TYPE=SNP;DBXREF=dbSNP:rs3772126,g1000:0.218251,esp5400:0.187117,ExAC:0.23; 3 121363680 chr3:SNP:633 C T 1022 . DP=80;DP4=20,13,29,18;AD=33,47;TYPE=SNP;DBXREF=dbSNP:rs34440810,g1000:0.0451278,esp5400:0.101134,ExAC:0.099; 3 121500697 chr3:SNP:634 G A 549 . DP=61;DP4=14,19,10,18;AD=33,28;TYPE=SNP;DBXREF=dbSNP:rs11920543,g1000:0.00399361,esp5400:0.010969,ExAC:0.016,clinvar:rs11920543|2,MutationTaster:1; 3 121507231 chr3:SNP:635 A T 1061 . DP=72;DP4=13,13,23,23;AD=26,46;TYPE=SNP;DBXREF=dbSNP:rs1141528,g1000:0.0427316,esp5400:0.0963,ExAC:0.093,clinvar:rs1141528|2|5,MutationTaster:0.009; 3 121514161 chr3:SNP:636 T C 232 off_target DP=26;DP4=15,0,11,0;AD=15,11;TYPE=SNP;DBXREF=dbSNP:rs4311252,g1000:0.182109; 3 121526099 chr3:SNP:637 A G 274 off_target DP=32;DP4=15,3,12,2;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs4582090,g1000:0.620407; 3 121526107 chr3:SNP:638 C T 328 off_target DP=30;DP4=13,2,14,1;AD=15,15;TYPE=SNP;DBXREF=dbSNP:rs4280673,g1000:0.182508; 3 121526204 chr3:SNP:639 G A 239 . DP=30;DP4=8,10,6,6;AD=18,12;TYPE=SNP;DBXREF=dbSNP:rs4543051,g1000:0.620008,esp5400:0.648782,ExAC:0.627,clinvar:rs4543051|2; 3 121547527 chr3:SNP:640 A G 142 low_coverage;off_target DP=15;DP4=1,7,1,6;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs1920320,g1000:0.182308,esp5400:0.260415,ExAC:0.207,clinvar:rs1920320|2; 3 121712980 chr3:SNP:641 C T 112 low_coverage;off_target DP=12;DP4=5,2,3,2;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs3915060,g1000:0.783347,ExAC:0.641; 3 121810427 chr3:INDEL:36 CTTTTTTTTT CTTTTTTTT 445 off_target DP=67;DP4=2,0,34,31;AD=2,65;TYPE=INDEL;DBXREF=dbSNP:rs63114861,g1000:0.994609,ExAC:0.999; 3 121825197 chr3:SNP:642 G A 10000 . DP=198;DP4=0,0,112,86;AD=0,198;TYPE=SNP;DBXREF=dbSNP:rs2681417,g1000:0.868011,esp5400:0.845324,ExAC:0.914,MutationTaster:0; 3 121836966 chr3:INDEL:37 TGA T 716 off_target DP=27;DP4=1,0,7,19;AD=1,26;TYPE=INDEL;DBXREF=dbSNP:rs10580127,g1000:1,ExAC:1; 3 121838319 chr3:SNP:643 G A 556 . DP=38;DP4=8,6,12,12;AD=14,24;TYPE=SNP;DBXREF=dbSNP:rs1129055,g1000:0.342652,esp5400:0.233408,ExAC:0.305,MutationTaster:0; 3 121976253 chr3:SNP:644 G A 262 off_target DP=27;DP4=1,13,1,12;AD=14,13;TYPE=SNP;DBXREF=dbSNP:rs9869985,g1000:0.921925,esp5400:0.911229,ExAC:0.943,clinvar:rs9869985|2|2; 3 122000871 chr3:SNP:645 C T 423 off_target DP=31;DP4=10,2,19,0;AD=12,19;TYPE=SNP;DBXREF=dbSNP:rs4678174,g1000:0.538139; 3 122003045 chr3:SNP:646 G C 2832 . DP=107;DP4=0,0,91,16;AD=0,107;TYPE=SNP;DBXREF=dbSNP:rs2036400,g1000:0.972843,esp5400:0.971365,ExAC:0.992,clinvar:rs2036400|2; 3 122003832 chr3:SNP:647 G C 1675 . DP=136;DP4=22,36,33,45;AD=58,78;TYPE=SNP;DBXREF=dbSNP:rs1801726,g1000:0.924121,esp5400:0.916341,ExAC:0.945,clinvar:rs1801726|2,MutationTaster:0; 3 122004098 chr3:SNP:648 A T 349 off_target DP=24;DP4=2,7,4,11;AD=9,15;TYPE=SNP;DBXREF=dbSNP:rs4677948,g1000:0.920128; 3 122056432 chr3:SNP:649 C T 1249 . DP=109;DP4=24,26,32,27;AD=50,59;TYPE=SNP;DBXREF=dbSNP:rs17589,g1000:0.392772,esp5400:0.507715,ExAC:0.496; 3 122060274 chr3:SNP:650 A C 119 low_coverage;off_target DP=17;DP4=9,2,4,2;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs6762112,g1000:0.0756789,esp5400:0.08981,ExAC:0.061; 3 122145810 chr3:SNP:651 T A 1326 off_target DP=50;DP4=0,0,31,19;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs4677950,g1000:0.978035,esp5400:0.972486,ExAC:0.992; 3 122168341 chr3:SNP:652 C A 573 off_target DP=51;DP4=15,9,23,4;AD=24,27;TYPE=SNP;DBXREF=dbSNP:rs3749209,g1000:0.49381; 3 122186188 chr3:SNP:653 C T 1022 . DP=39;DP4=0,0,29,9;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs4678193,g1000:0.99381,esp5400:0.992655,ExAC:0.998,MutationTaster:0; 3 122545494 chr3:SNP:654 A G 656 off_target DP=24;DP4=0,0,24,0;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs9853452,g1000:0.385184; 3 123008519 chr3:SNP:655 T G 437 low_coverage;off_target DP=16;DP4=0,0,15,1;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs4677881,g1000:0.997204; 3 123009824 chr3:SNP:656 C T 160 low_coverage;off_target DP=10;DP4=3,0,6,1;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs13096385,g1000:0.0782748; 3 123014877 chr3:SNP:657 C T 198 off_target DP=30;DP4=14,5,8,3;AD=19,11;TYPE=SNP;DBXREF=dbSNP:rs9881951,g1000:0.720647; 3 123015094 chr3:SNP:658 G C 743 off_target DP=28;DP4=0,0,8,20;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs9882534,g1000:0.984026,esp5400:0.985313,ExAC:0.996; 3 123018963 chr3:SNP:659 A G 818 . DP=60;DP4=18,5,32,5;AD=23,37;TYPE=SNP;DBXREF=dbSNP:rs4482616,g1000:0.806709,esp5400:0.802751,ExAC:0.8; 3 123021838 chr3:SNP:660 A G 490 low_coverage;off_target DP=19;DP4=0,0,12,7;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs9877581,g1000:0.983427; 3 123021870 chr3:SNP:661 G C 117 off_target DP=21;DP4=9,6,5,1;AD=15,6;TYPE=SNP;DBXREF=dbSNP:rs9844212,g1000:0.441693,esp5400:0.549545,ExAC:0.523; 3 123039584 chr3:SNP:662 C T 1089 off_target DP=104;DP4=27,23,29,25;AD=50,54;TYPE=SNP;DBXREF=dbSNP:rs112050992,g1000:0.00738818,esp5400:0.014594,ExAC:0.021; 3 123047478 chr3:SNP:663 A G 237 off_target DP=27;DP4=11,4,10,2;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs9855635,g1000:0.215256,esp5400:0.283231,ExAC:0.303; 3 123047666 chr3:SNP:664 A G 584 off_target DP=22;DP4=0,0,6,16;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs9855969,g1000:0.885184,esp5400:0.862149,ExAC:0.85; 3 123049707 chr3:SNP:665 G T 369 off_target DP=27;DP4=6,4,11,6;AD=10,17;TYPE=SNP;DBXREF=dbSNP:rs9829332,g1000:0.234824,esp5400:0.311954,ExAC:0.292; 3 123049938 chr3:SNP:666 A C 412 off_target DP=34;DP4=2,12,0,19;AD=14,19;TYPE=SNP;DBXREF=dbSNP:rs6806529,g1000:0.692292; 3 123066555 chr3:INDEL:38 A AAAGG 422 off_target DP=24;DP4=4,1,17,0;AD=5,17;TYPE=INDEL;DBXREF=dbSNP:rs112525497; 3 123167249 chr3:SNP:667 G A 371 low_coverage DP=15;DP4=0,0,2,12;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs4678027,g1000:0.986621,esp5400:0.991502,ExAC:0.996; 3 123411589 chr3:SNP:668 G A 1088 . DP=41;DP4=0,0,24,17;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs40305,g1000:0.332668,esp5400:0.55791,ExAC:0.578,clinvar:rs40305|2; 3 123418913 chr3:SNP:669 G A 478 low_coverage DP=18;DP4=0,0,18,0;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs865358,g1000:0.947883,esp5400:0.940881,ExAC:0.982,clinvar:rs865358|2; 3 123440967 chr3:SNP:670 G A 159 low_coverage DP=6;DP4=0,0,3,3;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs820355,g1000:0.913538,esp5400:0.908683,ExAC:0.967,clinvar:rs820355|2; 3 123441179 chr3:SNP:671 C T 175 low_coverage;off_target DP=7;DP4=0,0,1,6;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs820356,g1000:0.79373,esp5400:0.812778,ExAC:0.861; 3 123451773 chr3:SNP:672 G C 823 . DP=31;DP4=0,0,25,6;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs9833275,g1000:0.999002,esp5400:0.998606,ExAC:1,clinvar:rs9833275|2,MutationTaster:1; 3 123452838 chr3:SNP:673 G A 1013 . DP=99;DP4=16,34,15,34;AD=50,49;TYPE=SNP;DBXREF=dbSNP:rs4678047,g1000:0.632788,esp5400:0.573713,ExAC:0.655,clinvar:rs4678047|2; 3 123456432 chr3:SNP:674 C T 874 off_target DP=32;DP4=0,0,10,22;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs2168439,g1000:0.938498,esp5400:0.927868,ExAC:0.98; 3 123457711 chr3:SNP:675 C A 437 low_coverage;off_target DP=16;DP4=0,0,15,1;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2198766,g1000:0.929513,esp5400:0.917906,ExAC:0.974; 3 123457893 chr3:SNP:676 G A 992 . DP=39;DP4=0,0,10,28;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs9840993,g1000:0.85623,esp5400:0.870701,ExAC:0.944,clinvar:rs9840993|2,MutationTaster:1; 3 123633612 chr3:SNP:677 G A 319 low_coverage;off_target DP=12;DP4=0,0,11,1;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs11551801,g1000:0.375,esp5400:0.59266,ExAC:0.478; 3 123634046 chr3:SNP:678 G A 2832 . DP=107;DP4=0,0,59,48;AD=0,107;TYPE=SNP;DBXREF=dbSNP:rs2700373,g1000:0.842452,esp5400:0.810095,ExAC:0.794; 3 123652476 chr3:SNP:679 G A 823 off_target DP=31;DP4=0,0,22,9;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs6784695,g1000:0.84385,esp5400:0.821388,ExAC:0.733; 3 123665448 chr3:SNP:680 C T 206 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs1879362,g1000:0.992013; 3 123665902 chr3:SNP:681 T G 925 . DP=108;DP4=38,22,32,16;AD=60,48;TYPE=SNP;DBXREF=dbSNP:rs17310144,g1000:0.298522,esp5400:0.470719,ExAC:0.489,MutationTaster:0; 3 123666192 chr3:SNP:682 C T 349 off_target DP=43;DP4=7,19,3,14;AD=26,17;TYPE=SNP;DBXREF=dbSNP:rs17375977,g1000:0.315296,esp5400:0.49423,ExAC:0.49; 3 123987496 chr3:SNP:683 A G 181 low_coverage;off_target DP=13;DP4=5,0,8,0;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs73188176,g1000:0.00698882; 3 123988039 chr3:SNP:684 T C 3200 . DP=121;DP4=0,0,57,64;AD=0,121;TYPE=SNP;DBXREF=dbSNP:rs2272486,g1000:0.621805,esp5400:0.626186,ExAC:0.617,MutationTaster:1; 3 124044949 chr3:SNP:685 C T 3153 . DP=121;DP4=0,0,45,75;AD=0,120;TYPE=SNP;DBXREF=dbSNP:rs2289778,g1000:0.753594,esp5400:0.788437,ExAC:0.857,MutationTaster:1; 3 124113929 chr3:SNP:686 A T 354 off_target DP=46;DP4=18,9,14,4;AD=27,18;TYPE=SNP;DBXREF=dbSNP:rs482285,g1000:0.734026,esp5400:0.798701; 3 124114068 chr3:SNP:687 G A 1573 . DP=134;DP4=29,31,34,40;AD=60,74;TYPE=SNP;DBXREF=dbSNP:rs9841322,g1000:0.0832668,esp5400:0.120561,ExAC:0.128,MutationTaster:1; 3 124195987 chr3:SNP:688 T C 258 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs572145,g1000:0.98762; 3 124210344 chr3:SNP:689 C A 127 low_coverage;off_target DP=15;DP4=1,8,0,6;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs10755077,g1000:0.579872; 3 124281432 chr3:SNP:690 C T 116 low_coverage;off_target DP=9;DP4=3,1,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs114516129,g1000:0.0427316; 3 124282103 chr3:SNP:691 G A 438 off_target DP=39;DP4=8,11,6,14;AD=19,20;TYPE=SNP;DBXREF=dbSNP:rs73189578,g1000:0.0615016; 3 124303786 chr3:SNP:692 G C 909 off_target DP=73;DP4=12,19,17,25;AD=31,42;TYPE=SNP;DBXREF=dbSNP:rs2250757,g1000:0.664736,esp5400:0.586043,ExAC:0.485; 3 124352573 chr3:SNP:693 A G 241 off_target DP=34;DP4=13,9,9,3;AD=22,12;TYPE=SNP;DBXREF=dbSNP:rs652046,g1000:0.778754; 3 124369640 chr3:INDEL:39 T TA 589 off_target DP=73;DP4=15,19,13,21;AD=34,34;TYPE=INDEL;DBXREF=dbSNP:rs11372663,g1000:0.778754,ExAC:0.664; 3 124378386 chr3:SNP:694 C G 203 off_target DP=24;DP4=2,12,3,7;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs333297,g1000:0.771965; 3 124412471 chr3:SNP:695 T C 102 low_coverage;off_target DP=13;DP4=8,0,5,0;AD=8,5;TYPE=SNP;DBXREF=dbSNP:rs2289429,g1000:0.150559; 3 124412634 chr3:SNP:696 G T 396 off_target DP=39;DP4=12,8,11,8;AD=20,19;TYPE=SNP;DBXREF=dbSNP:rs333283,g1000:0.728035,esp5400:0.68786,ExAC:0.663; 3 124416698 chr3:SNP:697 A G 156 low_coverage;off_target DP=14;DP4=0,7,0,7;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs333277,g1000:0.511781; 3 124416711 chr3:SNP:698 A G 143 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs333276,g1000:0.511781; 3 124435888 chr3:SNP:699 T C 109 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs332506,g1000:0.805112; 3 124438329 chr3:SNP:700 C T 239 low_coverage;off_target DP=13;DP4=1,1,3,8;AD=2,11;TYPE=SNP;DBXREF=dbSNP:rs4234221,g1000:0.199681,esp5400:0.177017,ExAC:0.163; 3 124449148 chr3:SNP:701 G A 129 low_coverage;off_target DP=14;DP4=8,0,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs2279197,g1000:0.176118; 3 124449209 chr3:SNP:702 A G 426 . DP=39;DP4=16,4,19,0;AD=20,19;TYPE=SNP;DBXREF=dbSNP:rs2279198,g1000:0.559105,ExAC:0.59,clinvar:rs2279198|1; 3 124449252 chr3:SNP:703 T C 570 . DP=44;DP4=11,7,20,6;AD=18,26;TYPE=SNP;DBXREF=dbSNP:rs2279199,g1000:0.461462,ExAC:0.475,clinvar:rs2279199|1; 3 124449291 chr3:SNP:704 A G 693 . DP=64;DP4=13,18,17,16;AD=31,33;TYPE=SNP;DBXREF=dbSNP:rs1139538,g1000:0.560104,esp5400:0.527421,ExAC:0.596,clinvar:rs1139538|1; 3 124450437 chr3:INDEL:40 ATCT A 606 . DP=54;DP4=14,13,13,14;AD=27,27;TYPE=INDEL;DBXREF=dbSNP:rs141450300,g1000:0.179912,ExAC:0.142; 3 124456742 chr3:SNP:705 G C 1755 . DP=165;DP4=36,42,37,50;AD=78,87;TYPE=SNP;DBXREF=dbSNP:rs1801019,g1000:0.185903,esp5400:0.165365,ExAC:0.189,clinvar:rs1801019|1|6|6|6|6|2,MutationTaster:0.997; 3 124458816 chr3:SNP:706 C G 295 off_target DP=22;DP4=5,3,8,6;AD=8,14;TYPE=SNP;DBXREF=dbSNP:rs694897,g1000:0.647165,clinvar:rs694897|1; 3 124462808 chr3:SNP:707 C T 362 . DP=32;DP4=16,0,16,0;AD=16,16;TYPE=SNP;DBXREF=dbSNP:rs13146,g1000:0.186102,esp5400:0.165551,ExAC:0.189,clinvar:rs13146|2; 3 124463656 chr3:SNP:708 A T 1749 . DP=171;DP4=42,44,41,44;AD=86,85;TYPE=SNP;DBXREF=dbSNP:rs2242247,g1000:0.186102,ExAC:0.157; 3 124463657 chr3:SNP:709 C T 1846 . DP=183;DP4=46,47,44,46;AD=93,90;TYPE=SNP;DBXREF=dbSNP:rs649652,g1000:0.534545,ExAC:0.419; 3 124463982 chr3:SNP:710 G T 2026 . DP=202;DP4=43,60,42,57;AD=103,99;TYPE=SNP;DBXREF=dbSNP:rs2242248,g1000:0.185903,ExAC:0.152; 3 124465545 chr3:SNP:711 G A 359 . DP=38;DP4=0,20,1,17;AD=20,18;TYPE=SNP;DBXREF=dbSNP:rs4677940,g1000:0.182508,ExAC:0.156; 3 124465860 chr3:INDEL:41 T TTTTG 868 . DP=100;DP4=26,24,19,22;AD=50,41;TYPE=INDEL;DBXREF=dbSNP:rs10631393,g1000:0.186102,ExAC:0.155; 3 124465926 chr3:SNP:712 A G 834 . DP=56;DP4=8,12,18,18;AD=20,36;TYPE=SNP;DBXREF=dbSNP:rs1979411,g1000:0.186102,ExAC:0.153; 3 124465957 chr3:SNP:713 G A 791 . DP=53;DP4=10,8,14,21;AD=18,35;TYPE=SNP;DBXREF=dbSNP:rs1979412,g1000:0.177716,ExAC:0.142; 3 124466083 chr3:SNP:714 G A 711 . DP=52;DP4=9,10,13,20;AD=19,33;TYPE=SNP;DBXREF=dbSNP:rs1979413,g1000:0.186102,ExAC:0.061; 3 124466113 chr3:INDEL:42 CA CAA 514 . DP=53;DP4=13,14,17,8;AD=27,25;TYPE=INDEL;DBXREF=dbSNP:rs11443775,g1000:0.186102,ExAC:0.067; 3 124466921 chr3:SNP:715 A T 616 . DP=62;DP4=6,27,12,17;AD=33,29;TYPE=SNP;DBXREF=dbSNP:rs77082052,g1000:0.186102,ExAC:0.189; 3 124467069 chr3:SNP:716 T G 3042 . DP=115;DP4=0,0,77,38;AD=0,115;TYPE=SNP;DBXREF=dbSNP:rs593292,g1000:0.96246,ExAC:0.93; 3 124646594 chr3:SNP:717 A G 384 . DP=30;DP4=4,9,5,12;AD=13,17;TYPE=SNP;DBXREF=dbSNP:rs4679392,g1000:0.39377,esp5400:0.431772,ExAC:0.422,MutationTaster:0; 3 124646705 chr3:INDEL:43 A AAAG 605 . DP=23;DP4=1,0,10,12;AD=1,22;TYPE=INDEL;DBXREF=dbSNP:rs10630030,g1000:0.986022,ExAC:0.996; 3 124646837 chr3:SNP:718 G A 181 low_coverage DP=15;DP4=2,5,1,7;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs4679394,g1000:0.10623,esp5400:0.115728,ExAC:0.141,MutationTaster:0; 3 124653710 chr3:SNP:719 A G 398 low_coverage;off_target DP=15;DP4=0,0,0,15;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs10934701,g1000:0.958067; 3 126202147 chr3:SNP:720 G A 256 off_target DP=46;DP4=22,11,10,3;AD=33,13;TYPE=SNP;DBXREF=dbSNP:rs79648980,g1000:0.184305; 3 126202257 chr3:SNP:721 G A 982 . DP=125;DP4=39,34,24,28;AD=73,52;TYPE=SNP;DBXREF=dbSNP:rs1687477,g1000:0.409145,esp5400:0.423964,ExAC:0.471,clinvar:rs1687477|3; 3 126207222 chr3:SNP:722 A G 304 off_target DP=20;DP4=0,6,4,10;AD=6,14;TYPE=SNP;DBXREF=dbSNP:rs777483,g1000:0.641973; 3 126208249 chr3:SNP:723 A C 132 low_coverage;off_target DP=13;DP4=1,6,1,5;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs777479,g1000:0.491613,esp5400:0.488474,ExAC:0.556; 3 126211479 chr3:INDEL:44 C CCTCT 198 off_target DP=21;DP4=2,10,1,8;AD=12,9;TYPE=INDEL;DBXREF=dbSNP:rs2307882,g1000:0.711262; 3 126218167 chr3:SNP:724 G A 328 off_target DP=52;DP4=19,15,9,9;AD=34,18;TYPE=SNP;DBXREF=dbSNP:rs1168595,g1000:0.233227,esp5400:0.255952,ExAC:0.285; 3 126218769 chr3:SNP:725 T C 380 off_target DP=31;DP4=14,0,16,1;AD=14,17;TYPE=SNP;DBXREF=dbSNP:rs35907154,g1000:0.533946; 3 126218788 chr3:SNP:726 T C 308 off_target DP=33;DP4=17,1,13,2;AD=18,15;TYPE=SNP;DBXREF=dbSNP:rs6774768,g1000:0.53115; 3 126219030 chr3:SNP:727 T C 907 off_target DP=72;DP4=7,22,7,36;AD=29,43;TYPE=SNP;DBXREF=dbSNP:rs13072404,g1000:0.533746,esp5400:0.530593,ExAC:0.531; 3 126219086 chr3:SNP:728 A G 153 low_coverage;off_target DP=15;DP4=0,8,0,7;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs13092625,g1000:0.535144; 3 126219973 chr3:SNP:729 T C 531 off_target DP=20;DP4=0,0,19,1;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1177565,g1000:0.876797; 3 126220845 chr3:SNP:730 G A 635 off_target DP=58;DP4=5,22,7,24;AD=27,31;TYPE=SNP;DBXREF=dbSNP:rs7643584,g1000:0.551318; 3 126226518 chr3:SNP:731 C T 644 off_target DP=25;DP4=0,0,16,9;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs9784244,g1000:0.886382,esp5400:0.901051; 3 126228410 chr3:SNP:732 G A 1061 off_target DP=40;DP4=0,0,27,13;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs729456,g1000:0.430312,esp5400:0.431476,ExAC:0.382; 3 127411206 chr3:SNP:733 A G 515 off_target DP=39;DP4=6,9,8,16;AD=15,24;TYPE=SNP;DBXREF=dbSNP:rs116367069,g1000:0.0145767,esp5400:0.022959,ExAC:0.023; 3 127429567 chr3:SNP:734 C G 725 off_target DP=29;DP4=0,0,6,23;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs1010174,g1000:0.220847; 3 127440083 chr3:SNP:735 A C 236 low_coverage;off_target DP=10;DP4=0,1,0,9;AD=1,9;TYPE=SNP;DBXREF=dbSNP:rs13088071,g1000:0.233027; 3 128890350 chr3:SNP:736 G A 1088 . DP=41;DP4=0,0,31,10;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs4303883,g1000:0.757188,esp5400:0.785648,ExAC:0.89; 3 129152144 chr3:SNP:737 T C 335 low_coverage;off_target DP=13;DP4=0,0,4,9;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs140695,g1000:0.851238; 3 129185661 chr3:SNP:738 C A 517 off_target DP=23;DP4=1,0,19,2;AD=1,21;TYPE=SNP;DBXREF=dbSNP:rs6805886,g1000:1; 3 129279597 chr3:SNP:739 C T 871 off_target DP=36;DP4=0,0,20,16;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs2713627,g1000:0.998403,ExAC:0.999; 3 129281980 chr3:SNP:740 C T 1802 . DP=68;DP4=0,0,35,33;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs2713625,g1000:0.9998,esp5400:0.999814,ExAC:1,MutationTaster:1; 3 129293106 chr3:SNP:741 G C 765 off_target DP=28;DP4=0,0,27,1;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs6762822,g1000:0.52476; 3 129293183 chr3:SNP:742 T C 2726 . DP=103;DP4=0,0,56,47;AD=0,103;TYPE=SNP;DBXREF=dbSNP:rs2625962,g1000:0.988219,esp5400:0.990119,ExAC:0.996,MutationTaster:1; 3 129297012 chr3:SNP:743 G C 792 off_target DP=29;DP4=0,0,16,13;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs1872112,g1000:0.988019; 3 129297255 chr3:SNP:744 T C 660 . DP=51;DP4=9,11,11,20;AD=20,31;TYPE=SNP;DBXREF=dbSNP:rs112755880,esp5400:0.00242,ExAC:0.003174,MutationTaster:1; 3 129303197 chr3:SNP:745 T C 2237 off_target DP=87;DP4=0,0,51,36;AD=0,87;TYPE=SNP;DBXREF=dbSNP:rs2811463,g1000:0.984824,esp5400:0.988102,ExAC:0.996; 3 129308096 chr3:SNP:746 G A 291 low_coverage;off_target DP=12;DP4=0,0,11,1;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs13079843,g1000:0.558706; 3 129324193 chr3:SNP:747 A G 383 low_coverage DP=14;DP4=0,0,10,4;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs7619850,g1000:0.978435,esp5400:0.982305,ExAC:0.99; 3 129931610 chr3:SNP:748 A G 662 off_target DP=57;DP4=15,11,18,13;AD=26,31;TYPE=SNP;DBXREF=dbSNP:rs34989647,g1000:0.128594; 3 129934536 chr3:SNP:749 G C 1055 . DP=86;DP4=14,23,17,32;AD=37,49;TYPE=SNP;DBXREF=dbSNP:rs34795132,g1000:0.22524; 3 129934699 chr3:SNP:750 C T 292 low_coverage;off_target DP=11;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs7630506,g1000:0.927316; 3 129946918 chr3:SNP:751 T C 1038 . DP=74;DP4=12,14,23,25;AD=26,48;TYPE=SNP;DBXREF=dbSNP:rs4574337,g1000:0.761781; 3 129953447 chr3:SNP:752 A G 706 . DP=68;DP4=17,15,22,14;AD=32,36;TYPE=SNP;DBXREF=dbSNP:rs13082730,g1000:0.667532; 3 129956255 chr3:SNP:753 G A 165 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs60187499,g1000:0.742212; 3 129969817 chr3:SNP:754 A G 1292 . DP=149;DP4=31,50,25,42;AD=81,67;TYPE=SNP;DBXREF=dbSNP:rs6777871,g1000:0.735823; 3 129979845 chr3:SNP:755 T C 1019 . DP=40;DP4=0,0,18,21;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs896821,g1000:0.930112; 3 129982988 chr3:INDEL:45 CCG C 1613 . DP=122;DP4=26,19,33,37;AD=45,70;TYPE=INDEL;DBXREF=dbSNP:rs796666972; 3 129982989 chr3:INDEL:46 CG C 466 . DP=122;DP4=12,4,15,15;AD=16,30;TYPE=INDEL;DBXREF=dbSNP:rs138832975; 3 129982990 chr3:SNP:756 G C 195 low_variant_fraction DP=119;DP4=0,0,9,5;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs9829531,g1000:0.472644; 3 129982998 chr3:SNP:757 T C 2565 . DP=108;DP4=0,0,50,55;AD=0,105;TYPE=SNP;DBXREF=dbSNP:rs9849241,g1000:0.607029; 3 129985198 chr3:SNP:758 A G 199 low_coverage DP=18;DP4=3,6,4,5;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs9849611,g1000:0.285144; 3 129985977 chr3:SNP:759 A C 763 . DP=94;DP4=34,20,24,16;AD=54,40;TYPE=SNP;DBXREF=dbSNP:rs61744516,g1000:0.0555112; 3 129986290 chr3:INDEL:47 TGG TG 615 . DP=239;DP4=66,74,51,47;AD=140,98;TYPE=INDEL;DBXREF=dbSNP:rs11328567,g1000:0.267772; 3 129986662 chr3:SNP:760 G A 151 low_coverage DP=14;DP4=6,1,3,4;AD=7,7;TYPE=SNP;DBXREF=dbSNP:rs35435201,g1000:0.171526; 3 129986778 chr3:SNP:761 G T 679 . DP=59;DP4=27,1,25,6;AD=28,31;TYPE=SNP;DBXREF=dbSNP:rs9818598,g1000:0.254393; 3 129986838 chr3:SNP:762 G A 2192 . DP=87;DP4=1,0,54,32;AD=1,86;TYPE=SNP;DBXREF=dbSNP:rs9818624,g1000:0.338658; 3 129986907 chr3:SNP:763 C G 3214 . DP=125;DP4=2,0,71,52;AD=2,123;TYPE=SNP;DBXREF=dbSNP:rs9822192,g1000:0.335863; 3 129987255 chr3:INDEL:48 CAG C 1596 . DP=164;DP4=42,47,38,36;AD=89,74;TYPE=INDEL;DBXREF=dbSNP:rs138437134,g1000:0.00119808; 3 129987388 chr3:SNP:764 C T 1279 . DP=143;DP4=39,42,26,36;AD=81,62;TYPE=SNP;DBXREF=dbSNP:rs34622576,g1000:0.267572; 3 129987881 chr3:SNP:765 C T 2297 . DP=86;DP4=0,0,25,60;AD=0,85;TYPE=SNP;DBXREF=dbSNP:rs7625211,g1000:0.922524; 3 129988473 chr3:SNP:766 A G 1678 . DP=128;DP4=36,15,50,27;AD=51,77;TYPE=SNP;DBXREF=dbSNP:rs9866004,g1000:0.267971; 3 129988941 chr3:SNP:767 A G 2478 . DP=97;DP4=1,1,34,61;AD=2,95;TYPE=SNP;DBXREF=dbSNP:rs9870368,g1000:0.338858; 3 129989835 chr3:SNP:768 C T 1862 . DP=153;DP4=40,26,53,34;AD=66,87;TYPE=SNP;DBXREF=dbSNP:rs9834306,g1000:0.26258; 3 129990438 chr3:SNP:769 G C 635 . DP=66;DP4=16,19,20,11;AD=35,31;TYPE=SNP;DBXREF=dbSNP:rs72992481,g1000:0.0573083; 3 129990672 chr3:SNP:770 A C 2621 . DP=99;DP4=0,0,67,32;AD=0,99;TYPE=SNP;DBXREF=dbSNP:rs13093343,g1000:0.360224; 3 129991218 chr3:SNP:771 G A 946 . DP=126;DP4=22,55,15,34;AD=77,49;TYPE=SNP;DBXREF=dbSNP:rs1453253,g1000:0.254792; 3 129991510 chr3:SNP:772 C T 1127 . DP=117;DP4=25,34,26,31;AD=59,57;TYPE=SNP;DBXREF=dbSNP:rs16825506,g1000:0.0898562; 3 129991663 chr3:SNP:773 C T 2805 . DP=103;DP4=0,0,45,58;AD=0,103;TYPE=SNP;DBXREF=dbSNP:rs1453254,g1000:0.93151; 3 129991926 chr3:SNP:774 T C 1323 . DP=137;DP4=28,43,29,36;AD=71,65;TYPE=SNP;DBXREF=dbSNP:rs72992491,g1000:0.0553115; 3 129992302 chr3:SNP:775 A C 790 . DP=76;DP4=23,15,23,15;AD=38,38;TYPE=SNP;DBXREF=dbSNP:rs11914893,g1000:0.0982428; 3 129992520 chr3:INDEL:49 GTTTTTTT GTTTTTT 152 . DP=86;DP4=16,29,17,23;AD=45,40;TYPE=INDEL;DBXREF=dbSNP:rs142952665,g1000:0.0553115; 3 130095031 chr3:SNP:776 C T 176 off_target DP=25;DP4=14,2,7,2;AD=16,9;TYPE=SNP;DBXREF=dbSNP:rs9835065,g1000:0.403754,esp5400:0.270872,ExAC:0.266; 3 130098349 chr3:SNP:777 G A 652 . DP=91;DP4=34,23,20,14;AD=57,34;TYPE=SNP;DBXREF=dbSNP:rs16845861,g1000:0.390575,esp5400:0.267161,ExAC:0.269; 3 130103539 chr3:SNP:778 C T 201 off_target DP=25;DP4=14,0,10,0;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs1453242,g1000:0.394968; 3 130103709 chr3:SNP:779 G A 1103 . DP=123;DP4=37,31,33,22;AD=68,55;TYPE=SNP;DBXREF=dbSNP:rs1453241,g1000:0.396765,esp5400:0.26778,ExAC:0.272,MutationTaster:0; 3 130104062 chr3:SNP:780 T C 322 . DP=38;DP4=12,10,10,6;AD=22,16;TYPE=SNP;DBXREF=dbSNP:rs10212241,g1000:0.419728,esp5400:0.267946,ExAC:0.281; 3 130104206 chr3:SNP:781 A G 329 . DP=46;DP4=10,19,5,12;AD=29,17;TYPE=SNP;DBXREF=dbSNP:rs10212372,g1000:0.401757,esp5400:0.252475,ExAC:0.278; 3 130104306 chr3:SNP:782 C T 112 low_coverage;off_target DP=9;DP4=0,4,0,5;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs10212618,g1000:0.401558; 3 130108063 chr3:SNP:783 A G 262 off_target DP=25;DP4=0,11,1,13;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs57575291,g1000:0.402756; 3 130109993 chr3:SNP:784 T C 1345 off_target DP=119;DP4=46,11,55,7;AD=57,62;TYPE=SNP;DBXREF=dbSNP:rs35898730,g1000:0.090655,esp5400:0.094001,ExAC:0.077; 3 130110550 chr3:SNP:785 A G 254 . DP=35;DP4=9,13,4,9;AD=22,13;TYPE=SNP;DBXREF=dbSNP:rs11917356,g1000:0.375,esp5400:0.214904,ExAC:0.241,MutationTaster:0; 3 130113635 chr3:SNP:786 T G 128 low_coverage;off_target DP=11;DP4=5,0,5,1;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs10934938,g1000:0.407748; 3 130114408 chr3:INDEL:50 ACC AC 172 off_target DP=20;DP4=0,4,0,16;AD=4,16;TYPE=INDEL;DBXREF=dbSNP:rs5852594,g1000:1; 3 130116696 chr3:SNP:787 A C 1889 . DP=169;DP4=24,55,40,50;AD=79,90;TYPE=SNP;DBXREF=dbSNP:rs12488457,g1000:0.339257,esp5400:0.596166,ExAC:0.516,MutationTaster:0.006; 3 130124491 chr3:SNP:788 G A 287 . DP=24;DP4=5,5,3,11;AD=10,14;TYPE=SNP;DBXREF=dbSNP:rs10934940,g1000:0.448283,esp5400:0.68522,ExAC:0.596; 3 130124989 chr3:SNP:789 C T 724 . DP=63;DP4=19,10,25,9;AD=29,34;TYPE=SNP;DBXREF=dbSNP:rs4688761,g1000:0.408946,esp5400:0.638837,ExAC:0.542; 3 130125116 chr3:SNP:790 G C 719 . DP=83;DP4=19,28,11,25;AD=47,36;TYPE=SNP;DBXREF=dbSNP:rs1497312,g1000:0.452077,esp5400:0.685529,ExAC:0.602,MutationTaster:0; 3 130128668 chr3:SNP:791 C A 134 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs11917803,g1000:0.407149; 3 130129128 chr3:INDEL:51 T TGTA 706 off_target DP=43;DP4=7,6,23,6;AD=13,29;TYPE=INDEL;DBXREF=dbSNP:rs3075233,g1000:0.545727; 3 130129322 chr3:SNP:792 G C 1573 . DP=134;DP4=18,42,24,50;AD=60,74;TYPE=SNP;DBXREF=dbSNP:rs35886424,g1000:0.109625,esp5400:0.127706,ExAC:0.124,MutationTaster:0; 3 130129517 chr3:INDEL:52 A AG 131 off_target DP=20;DP4=0,11,0,8;AD=11,8;TYPE=INDEL;DBXREF=dbSNP:rs35209265,g1000:0.109625; 3 130132304 chr3:SNP:793 G T 152 low_coverage;off_target DP=12;DP4=4,1,7,0;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs11713542,g1000:0.434704; 3 130132509 chr3:SNP:794 A G 311 off_target DP=32;DP4=3,14,2,13;AD=17,15;TYPE=SNP;DBXREF=dbSNP:rs2219026,g1000:0.436302,esp5400:0.664604; 3 130132851 chr3:SNP:795 A G 1008 off_target DP=38;DP4=0,0,23,15;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs10512767,g1000:0.546126,esp5400:0.797958; 3 130134453 chr3:SNP:796 C T 305 off_target DP=25;DP4=7,4,8,6;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs13070906,g1000:0.067492,esp5400:0.024428,ExAC:0.07; 3 130134454 chr3:SNP:797 A G 294 off_target DP=25;DP4=7,4,8,6;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs13070741,g1000:0.0798722,esp5400:0.033086,ExAC:0.073; 3 130134492 chr3:SNP:798 T C 399 . DP=34;DP4=11,5,10,8;AD=16,18;TYPE=SNP;DBXREF=dbSNP:rs16827497,g1000:0.451278,esp5400:0.687384,ExAC:0.602,MutationTaster:0; 3 130134563 chr3:SNP:799 G A 451 low_coverage;off_target DP=17;DP4=0,0,7,10;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs7628563,g1000:0.525759,esp5400:0.774583,ExAC:0.684; 3 130135575 chr3:SNP:800 A T 292 low_coverage;off_target DP=11;DP4=0,0,7,4;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4688798,g1000:0.640575,esp5400:0.836735,ExAC:0.785; 3 130137866 chr3:SNP:801 G A 143 low_coverage;off_target DP=13;DP4=1,5,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs13062453,g1000:0.530551; 3 130139884 chr3:SNP:802 C T 306 off_target DP=20;DP4=7,0,12,1;AD=7,13;TYPE=SNP;DBXREF=dbSNP:rs12636289,g1000:0.180511; 3 130141427 chr3:SNP:803 G T 134 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs976324,g1000:0.0948482; 3 130141452 chr3:SNP:804 A G 144 low_coverage;off_target DP=19;DP4=12,0,7,0;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs976325,g1000:0.179113; 3 130141815 chr3:SNP:805 C G 295 low_coverage;off_target DP=18;DP4=0,6,0,12;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs2173186,g1000:0.227037; 3 130142584 chr3:SNP:806 A T 194 low_coverage;off_target DP=11;DP4=2,0,6,3;AD=2,9;TYPE=SNP;DBXREF=dbSNP:rs2896545,g1000:0.228435; 3 130142843 chr3:SNP:807 C T 194 low_coverage;off_target DP=13;DP4=1,4,0,8;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs976558,g1000:0.175719; 3 130144984 chr3:SNP:808 G C 1432 off_target DP=54;DP4=0,0,36,18;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs1874599,g1000:0.976637,esp5400:0.983302; 3 130145175 chr3:SNP:809 G A 875 off_target DP=104;DP4=25,32,19,28;AD=57,47;TYPE=SNP;DBXREF=dbSNP:rs9859372,g1000:0.223243,esp5400:0.187693,ExAC:0.217; 3 130148510 chr3:SNP:810 C T 262 off_target DP=27;DP4=3,11,4,9;AD=14,13;TYPE=SNP;DBXREF=dbSNP:rs9875499,g1000:0.220647,esp5400:0.179344; 3 130158343 chr3:SNP:811 C T 1220 off_target DP=46;DP4=0,0,27,19;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs2403340,g1000:0.372204,esp5400:0.610699,ExAC:0.522; 3 130162395 chr3:SNP:812 A G 1167 . DP=44;DP4=0,0,23,21;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs9883988,g1000:0.854233,esp5400:0.893564,ExAC:0.914,MutationTaster:0; 3 130174334 chr3:SNP:813 G A 1008 . DP=38;DP4=0,0,21,17;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs819085,g1000:0.903155,esp5400:0.916843,ExAC:0.932,MutationTaster:0; 3 130187817 chr3:SNP:814 T C 1908 . DP=72;DP4=0,0,24,48;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs322113,g1000:0.890176,esp5400:0.887471,ExAC:0.909,MutationTaster:0; 3 130427085 chr3:SNP:815 T C 481 off_target DP=49;DP4=16,9,19,5;AD=25,24;TYPE=SNP;DBXREF=dbSNP:rs139650657,g1000:0.0211661,esp5400:0.026879,ExAC:0.03; 3 130678263 chr3:SNP:816 T C 196 off_target DP=36;DP4=1,24,1,10;AD=25,11;TYPE=SNP;DBXREF=dbSNP:rs2760271,g1000:0.190895; 3 130698518 chr3:INDEL:53 TC T 166 low_coverage;off_target DP=18;DP4=0,10,0,8;AD=10,8;TYPE=INDEL;DBXREF=dbSNP:rs34517438,g1000:0.359225; 3 130698527 chr3:INDEL:54 CAA CA 196 low_coverage;off_target DP=17;DP4=0,1,0,16;AD=1,16;TYPE=INDEL;DBXREF=dbSNP:rs5852612,g1000:0.792532; 3 130715814 chr3:SNP:817 A G 154 low_coverage;off_target DP=17;DP4=0,10,0,7;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs13061145,g1000:0.138978; 3 130716707 chr3:SNP:818 T C 125 low_coverage;off_target DP=12;DP4=2,4,3,3;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs116087687,g1000:0.00938498; 3 132403418 chr3:SNP:819 C T 611 . DP=41;DP4=10,4,17,10;AD=14,27;TYPE=SNP;DBXREF=dbSNP:rs34391943,g1000:0.00339457,esp5400:0.009017,ExAC:0.008632,clinvar:rs34391943|2|3|2,MutationTaster:1; 3 132441046 chr3:SNP:820 C T 421 . DP=43;DP4=16,5,15,6;AD=21,21;TYPE=SNP;DBXREF=dbSNP:rs145643112,g1000:0.00419329,esp5400:0.01104,ExAC:0.01,clinvar:rs145643112|2|3,MutationTaster:0; 3 133167363 chr3:SNP:821 G A 201 . DP=33;DP4=12,10,5,6;AD=22,11;TYPE=SNP;DBXREF=dbSNP:rs2276737,g1000:0.436502,esp5400:0.458078,ExAC:0.543; 3 133185848 chr3:INDEL:55 ACT A 312 off_target DP=21;DP4=2,6,3,10;AD=8,13;TYPE=INDEL;DBXREF=dbSNP:rs10563564,g1000:0.142173,ExAC:0.123; 3 133191453 chr3:SNP:822 A G 145 low_coverage;off_target DP=16;DP4=0,9,0,7;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs7628499,g1000:0.616214,esp5400:0.624694,ExAC:0.665; 3 133329943 chr3:SNP:823 G A 712 . DP=76;DP4=18,24,16,18;AD=42,34;TYPE=SNP;DBXREF=dbSNP:rs1444601,g1000:0.682109,esp5400:0.746594,ExAC:0.69; 3 133335787 chr3:SNP:824 C T 450 off_target DP=39;DP4=6,12,10,11;AD=18,21;TYPE=SNP;DBXREF=dbSNP:rs3732574,g1000:0.632188,esp5400:0.697905,ExAC:0.571; 3 133339340 chr3:SNP:825 A G 104 low_coverage;off_target DP=9;DP4=0,4,0,5;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs2887747,g1000:0.915735; 3 133341988 chr3:SNP:826 T C 791 . DP=66;DP4=19,8,22,17;AD=27,39;TYPE=SNP;DBXREF=dbSNP:rs10935070,g1000:0.187899,esp5400:0.24326,ExAC:0.287,MutationTaster:0; 3 133342192 chr3:SNP:827 C T 937 . DP=89;DP4=20,24,24,21;AD=44,45;TYPE=SNP;DBXREF=dbSNP:rs61758061,g1000:0.00539137,esp5400:0.006543,ExAC:0.011,MutationTaster:0; 3 133347388 chr3:SNP:828 A G 1001 off_target DP=76;DP4=17,11,27,20;AD=28,47;TYPE=SNP;DBXREF=dbSNP:rs114654375,g1000:0.00898562,esp5400:0.018203,ExAC:0.018; 3 133368362 chr3:SNP:829 T G 1460 . DP=127;DP4=25,31,33,38;AD=56,71;TYPE=SNP;DBXREF=dbSNP:rs3192149,g1000:0.695887,esp5400:0.773429,ExAC:0.716,MutationTaster:0; 3 133374030 chr3:SNP:830 T C 355 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7639941,g1000:0.978435; 3 133375785 chr3:SNP:831 G A 953 off_target DP=37;DP4=0,0,14,23;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2718801,g1000:0.879593; 3 133380130 chr3:SNP:832 T C 219 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2718805,g1000:0.985823; 3 133465283 chr3:SNP:833 A G 690 . DP=26;DP4=0,0,10,16;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs1130459,g1000:0.666134,esp5400:0.576527,ExAC:0.578; 3 133474328 chr3:SNP:834 G A 522 . DP=42;DP4=8,10,13,11;AD=18,24;TYPE=SNP;DBXREF=dbSNP:rs12769,g1000:0.311302,esp5400:0.257762,ExAC:0.33; 3 133475563 chr3:SNP:835 G T 628 off_target DP=23;DP4=0,0,19,4;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs4241357,g1000:0.63119; 3 133475722 chr3:SNP:836 C T 1154 . DP=101;DP4=21,27,26,27;AD=48,53;TYPE=SNP;DBXREF=dbSNP:rs1799852,g1000:0.142572,esp5400:0.085239,ExAC:0.129; 3 133475812 chr3:SNP:837 G A 443 . DP=47;DP4=13,13,9,12;AD=26,21;TYPE=SNP;DBXREF=dbSNP:rs1799899,g1000:0.0305511,esp5400:0.033742,ExAC:0.053,clinvar:rs1799899|0,MutationTaster:0.89; 3 133483696 chr3:SNP:838 T C 223 low_coverage;off_target DP=17;DP4=3,4,4,6;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs1880669,g1000:0.502196,esp5400:0.514222,ExAC:0.56; 3 133485133 chr3:SNP:839 A G 1538 . DP=58;DP4=0,0,30,28;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs2692696,g1000:0.993211,esp5400:0.999442,ExAC:0.993,MutationTaster:0; 3 133496102 chr3:SNP:840 T C 242 off_target DP=29;DP4=3,14,1,11;AD=17,12;TYPE=SNP;DBXREF=dbSNP:rs377694604,esp5400:0.000186,ExAC:0.0003047; 3 133661352 chr3:SNP:841 G T 122 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs3923834,g1000:0.182708; 3 133663824 chr3:INDEL:56 A AGT 218 off_target DP=24;DP4=11,1,10,0;AD=12,10;TYPE=INDEL;DBXREF=dbSNP:rs139999843,g1000:0.244609; 3 133666209 chr3:SNP:842 C T 1332 . DP=118;DP4=26,25,32,33;AD=51,65;TYPE=SNP;DBXREF=dbSNP:rs34550074,g1000:0.283746,esp5400:0.267429,ExAC:0.234,MutationTaster:0.001; 3 133667646 chr3:SNP:843 C T 157 off_target DP=26;DP4=8,10,3,5;AD=18,8;TYPE=SNP;DBXREF=dbSNP:rs55943046,g1000:0.226637; 3 133670073 chr3:SNP:844 T C 496 . DP=47;DP4=14,10,14,9;AD=24,23;TYPE=SNP;DBXREF=dbSNP:rs6767412,g1000:0.254393,esp5400:0.236661,ExAC:0.228; 3 133670225 chr3:SNP:845 T C 111 low_coverage;off_target DP=14;DP4=1,7,2,4;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs6767522,g1000:0.254393,esp5400:0.236475,ExAC:0.228; 3 133692497 chr3:SNP:846 A G 410 low_coverage DP=15;DP4=0,0,9,6;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs4634113,g1000:0.904553,esp5400:0.871352,ExAC:0.874; 3 133698280 chr3:SNP:847 C G 282 off_target DP=29;DP4=11,4,9,5;AD=15,14;TYPE=SNP;DBXREF=dbSNP:rs4640563,g1000:0.896965,esp5400:0.880461,ExAC:0.896; 3 133877113 chr3:SNP:848 A G 626 . DP=79;DP4=17,28,13,21;AD=45,34;TYPE=SNP;DBXREF=dbSNP:rs56088702,g1000:0.0403355,esp5400:0.106173,ExAC:0.074; 3 133941504 chr3:SNP:849 G A 144 low_coverage;off_target DP=19;DP4=0,12,0,7;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs9865808,g1000:0.231829; 3 134213897 chr3:SNP:850 T G 335 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6804907,g1000:0.929113; 3 134213981 chr3:SNP:851 T C 490 low_coverage;off_target DP=19;DP4=0,0,19,0;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs17694011,g1000:0.682308; 3 134214042 chr3:SNP:852 T C 1511 off_target DP=57;DP4=0,0,47,10;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs62269547,g1000:0.682308; 3 134226159 chr3:SNP:853 C T 929 off_target DP=35;DP4=0,0,17,18;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs6766818,g1000:0.708666,esp5400:0.642313,ExAC:0.699; 3 134256159 chr3:SNP:854 A G 1352 off_target DP=51;DP4=0,0,16,35;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs12634127,g1000:0.39996,esp5400:0.375627,ExAC:0.481; 3 134264218 chr3:SNP:855 T C 292 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs7373651,g1000:0.996006; 3 134264297 chr3:INDEL:57 AAT A 1044 off_target DP=43;DP4=4,0,39,0;AD=4,39;TYPE=INDEL;DBXREF=dbSNP:rs72323493,g1000:0.946286; 3 134264859 chr3:SNP:856 A C 796 off_target DP=30;DP4=0,0,24,6;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs1357762,g1000:0.65615; 3 134268619 chr3:SNP:857 A G 250 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs9289478,g1000:0.656749; 3 134277301 chr3:SNP:858 G A 425 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs4309773,g1000:0.681709; 3 134278270 chr3:SNP:859 C T 309 low_coverage DP=12;DP4=0,0,5,7;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1127826,g1000:0.327077,esp5400:0.260922,ExAC:0.357,clinvar:rs1127826|2,MutationTaster:1; 3 134280395 chr3:SNP:860 T A 1609 off_target DP=59;DP4=0,0,21,38;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs6777283,g1000:0.996805,esp5400:0.998327,ExAC:0.999; 3 134293619 chr3:SNP:861 A G 690 off_target DP=26;DP4=0,0,20,6;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs4586863,g1000:0.98762,esp5400:0.99115,ExAC:0.997; 3 136035737 chr3:SNP:862 A G 1088 off_target DP=41;DP4=0,0,34,7;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs9833162,g1000:0.286342,esp5400:0.391801,ExAC:0.304,clinvar:rs9833162|2; 3 136573440 chr3:SNP:863 A G 1696 . DP=64;DP4=0,0,53,11;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs9827648,g1000:0.704872,esp5400:0.665024,ExAC:0.713; 3 136574501 chr3:SNP:864 A G 660 . DP=28;DP4=0,0,8,19;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs1052618,g1000:0.712859,esp5400:0.671593,ExAC:0.715,MutationTaster:0; 3 136574521 chr3:SNP:865 C T 696 . DP=27;DP4=0,0,3,24;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs1052620,g1000:0.0876597,esp5400:0.169362,ExAC:0.185; 3 136574578 chr3:INDEL:58 T TTAA 437 low_coverage;off_target DP=17;DP4=0,0,0,16;AD=0,16;TYPE=INDEL;DBXREF=dbSNP:rs3076229,g1000:0.712859,ExAC:0.709; 3 137843106 chr3:SNP:866 T C 531 . DP=20;DP4=0,0,13,7;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2170309,g1000:0.654153,esp5400:0.659509,ExAC:0.653; 3 137843476 chr3:SNP:867 G T 584 . DP=22;DP4=0,0,18,4;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2246945,g1000:0.653754,esp5400:0.65923,ExAC:0.652,MutationTaster:0; 3 137850003 chr3:SNP:868 A G 1756 . DP=74;DP4=2,3,25,44;AD=5,69;TYPE=SNP;DBXREF=dbSNP:rs2724691,g1000:0.614018,esp5400:0.64287,ExAC:0.639; 3 139063119 chr3:SNP:869 G A 556 off_target DP=48;DP4=2,20,6,20;AD=22,26;TYPE=SNP;DBXREF=dbSNP:rs74877536,g1000:0.0601038; 3 139066902 chr3:SNP:870 A T 159 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs10755092,g1000:0.675519; 3 139069693 chr3:SNP:871 C A 277 off_target DP=31;DP4=11,6,9,5;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs17316181,g1000:0.0601038; 3 139070112 chr3:SNP:872 A G 246 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs6788313,g1000:0.876797; 3 139074837 chr3:SNP:873 T G 130 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs9846449,g1000:0.0435304; 3 139076003 chr3:SNP:874 C T 145 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs80049554,g1000:0.0617013; 3 139894697 chr3:SNP:875 T C 374 off_target DP=29;DP4=12,0,17,0;AD=12,17;TYPE=SNP;DBXREF=dbSNP:rs4305391,g1000:0.28754; 3 140122341 chr3:SNP:876 G A 273 off_target DP=21;DP4=9,0,12,0;AD=9,12;TYPE=SNP;DBXREF=dbSNP:rs4683494,g1000:0.602436; 3 140122343 chr3:SNP:877 G A 277 off_target DP=20;DP4=8,0,12,0;AD=8,12;TYPE=SNP; 3 140123661 chr3:SNP:878 C T 458 off_target DP=69;DP4=16,28,8,17;AD=44,25;TYPE=SNP;DBXREF=dbSNP:rs143019314,g1000:0.00339457; 3 140167216 chr3:SNP:879 G A 398 low_coverage;off_target DP=15;DP4=0,0,15,0;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs4683498,g1000:0.267971; 3 140167536 chr3:SNP:880 A G 10000 . DP=141;DP4=0,0,62,79;AD=0,141;TYPE=SNP;DBXREF=dbSNP:rs2081803,g1000:0.847244,esp5400:0.897936,ExAC:0.85; 3 140178279 chr3:SNP:881 G A 823 off_target DP=31;DP4=0,0,26,5;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs9836487,g1000:0.280751; 3 140178485 chr3:SNP:882 G A 1696 . DP=64;DP4=0,0,29,35;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs7632885,g1000:0.532348,esp5400:0.602993,ExAC:0.564,MutationTaster:0; 3 140178638 chr3:INDEL:59 CCCT C 927 off_target DP=62;DP4=11,11,12,27;AD=22,39;TYPE=INDEL;DBXREF=dbSNP:rs10590825,g1000:0.493011,ExAC:0.554; 3 140281723 chr3:SNP:883 C T 1729 . DP=144;DP4=35,28,44,37;AD=63,81;TYPE=SNP;DBXREF=dbSNP:rs11714465,g1000:0.336462,esp5400:0.519427,ExAC:0.573; 3 140282084 chr3:SNP:884 C G 644 off_target DP=25;DP4=0,0,7,18;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs4683509,g1000:0.456869,esp5400:0.677356,ExAC:0.656; 3 140282718 chr3:SNP:885 T G 226 off_target DP=32;DP4=19,1,11,1;AD=20,12;TYPE=SNP;DBXREF=dbSNP:rs74938120,g1000:0.0353435; 3 140282861 chr3:SNP:886 C T 1393 . DP=113;DP4=27,23,33,30;AD=50,63;TYPE=SNP;DBXREF=dbSNP:rs10804675,g1000:0.373403,esp5400:0.559119,ExAC:0.584; 3 142168331 chr3:SNP:887 C T 2304 . DP=87;DP4=0,0,36,51;AD=0,87;TYPE=SNP;DBXREF=dbSNP:rs1802904,g1000:0.916334,esp5400:0.897658,ExAC:0.865,clinvar:rs1802904|255; 3 142178144 chr3:SNP:888 C T 1017 . DP=79;DP4=8,23,16,32;AD=31,48;TYPE=SNP;DBXREF=dbSNP:rs2229032,g1000:0.102236,esp5400:0.133575,ExAC:0.132,clinvar:rs2229032|2,MutationTaster:0.002; 3 142215171 chr3:SNP:889 T C 367 off_target DP=35;DP4=14,3,12,6;AD=17,18;TYPE=SNP;DBXREF=dbSNP:rs11719960,esp5400:0.002523,ExAC:0.016,clinvar:rs11719960|3; 3 142215178 chr3:SNP:890 A C 406 off_target DP=36;DP4=12,6,12,6;AD=18,18;TYPE=SNP;DBXREF=dbSNP:rs7620648,esp5400:0.624768,clinvar:rs7620648|3; 3 142255090 chr3:SNP:891 T C 185 low_coverage;off_target DP=18;DP4=2,7,3,6;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs73240314,g1000:0.117212,esp5400:0.143593,ExAC:0.135,clinvar:rs73240314|3; 3 142272314 chr3:SNP:892 G A 146 low_coverage;off_target DP=18;DP4=10,1,7,0;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs9869842,g1000:0.597843; 3 142277427 chr3:SNP:893 A G 308 off_target DP=29;DP4=10,4,9,6;AD=14,15;TYPE=SNP;DBXREF=dbSNP:rs73240318,g1000:0.11222,esp5400:0.140852,clinvar:rs73240318|3; 3 142277575 chr3:SNP:894 A T 656 . DP=68;DP4=17,18,20,13;AD=35,33;TYPE=SNP;DBXREF=dbSNP:rs2227930,g1000:0.598043,esp5400:0.665272,ExAC:0.553,clinvar:rs2227930|255; 3 142281612 chr3:SNP:895 A G 446 . DP=40;DP4=7,12,5,16;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs2227928,g1000:0.597444,esp5400:0.664343,ExAC:0.552,clinvar:rs2227928|255,MutationTaster:0; 3 143185836 chr3:SNP:896 C T 881 off_target DP=74;DP4=25,9,30,10;AD=34,40;TYPE=SNP;DBXREF=dbSNP:rs16853643,g1000:0.180312,esp5400:0.214166,ExAC:0.11; 3 143186135 chr3:SNP:897 T A 437 off_target DP=43;DP4=1,21,1,20;AD=22,21;TYPE=SNP;DBXREF=dbSNP:rs7640246,g1000:0.170727; 3 143214114 chr3:SNP:898 T C 160 off_target DP=24;DP4=11,5,7,1;AD=16,8;TYPE=SNP;DBXREF=dbSNP:rs838598,g1000:0.409744; 3 143271176 chr3:SNP:899 C G 447 off_target DP=60;DP4=20,17,12,11;AD=37,23;TYPE=SNP;DBXREF=dbSNP:rs1525862,g1000:0.107029,esp5400:0.099572,ExAC:0.132; 3 143271396 chr3:SNP:900 T C 156 off_target DP=23;DP4=3,12,0,8;AD=15,8;TYPE=SNP;DBXREF=dbSNP:rs77003891,g1000:0.0447284; 3 143293012 chr3:SNP:901 A G 1287 . DP=50;DP4=0,0,25,25;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs6763202,g1000:0.340655,esp5400:0.29485,ExAC:0.287; 3 143297591 chr3:SNP:902 A C 809 off_target DP=86;DP4=14,31,13,28;AD=45,41;TYPE=SNP;DBXREF=dbSNP:rs13076949,g1000:0.108826,esp5400:0.099554,ExAC:0.136; 3 143370967 chr3:SNP:903 A G 398 low_coverage;off_target DP=15;DP4=0,0,13,2;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs1242070,g1000:0.681909; 3 143371447 chr3:SNP:904 T C 239 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1242068,g1000:0.632987; 3 143513975 chr3:SNP:905 A G 536 off_target DP=44;DP4=3,14,10,17;AD=17,27;TYPE=SNP;DBXREF=dbSNP:rs56969315,g1000:0.288938,esp5400:0.229437; 3 143515899 chr3:SNP:906 A T 185 low_coverage;off_target DP=18;DP4=0,9,0,9;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs11718136,g1000:0.167532; 3 143567207 chr3:SNP:907 A G 1287 off_target DP=50;DP4=0,0,17,33;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs11714060,g1000:0.95008,esp5400:0.939952,ExAC:0.971; 3 145790519 chr3:SNP:908 T A 206 low_coverage;off_target DP=18;DP4=0,9,0,9;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs3762694,g1000:0.171326; 3 145796891 chr3:SNP:909 T C 435 off_target DP=50;DP4=16,11,17,6;AD=27,23;TYPE=SNP;DBXREF=dbSNP:rs73010484,g1000:0.248403,esp5400:0.249675,ExAC:0.271,clinvar:rs73010484|2; 3 145838895 chr3:SNP:910 C T 377 . DP=32;DP4=9,5,12,6;AD=14,18;TYPE=SNP;DBXREF=dbSNP:rs4681297,g1000:0.781749,esp5400:0.783417,ExAC:0.766,clinvar:rs4681297|2; 3 145842186 chr3:SNP:911 T C 113 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs3762690,g1000:0.0814696; 3 145878621 chr3:SNP:912 C T 192 low_coverage;off_target DP=12;DP4=4,0,6,2;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs76718163,g1000:0.0810703,esp5400:0.0888,ExAC:0.069; 3 145878629 chr3:SNP:913 C T 141 low_coverage;off_target DP=12;DP4=5,0,6,1;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs116299517,g1000:0.0810703,esp5400:0.095005,ExAC:0.068; 3 148858987 chr3:INDEL:60 CTTTTTTTTTTTTT CTTTTTTTTTTTTTTTTT 227 homopolymer_region;off_target DP=81;DP4=2,2,69,5;AD=4,74;TYPE=INDEL;DBXREF=dbSNP:rs111598115,ExAC:0.152; 3 148859318 chr3:SNP:914 G T 132 low_coverage;off_target DP=10;DP4=0,1,0,6;AD=1,6;TYPE=SNP;DBXREF=dbSNP:rs200719184; 3 148859329 chr3:SNP:915 T G 114 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs1568711,g1000:0.48742; 3 148868194 chr3:SNP:916 A G 246 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2689231,g1000:0.210064; 3 148868247 chr3:SNP:917 A C 344 low_coverage;off_target DP=14;DP4=1,0,13,0;AD=1,13;TYPE=SNP;DBXREF=dbSNP:rs2254913,g1000:0.698682; 3 148868292 chr3:INDEL:61 GCCC GCC 387 off_target DP=37;DP4=0,2,24,11;AD=2,35;TYPE=INDEL;DBXREF=dbSNP:rs150286093,g1000:0.210064; 3 148868361 chr3:SNP:918 C T 1702 off_target DP=69;DP4=2,1,30,36;AD=3,66;TYPE=SNP;DBXREF=dbSNP:rs2689232,g1000:0.186302,esp5400:0.166853,ExAC:0.213,clinvar:rs2689232|2; 3 148871124 chr3:SNP:919 C T 246 off_target DP=27;DP4=14,1,12,0;AD=15,12;TYPE=SNP;DBXREF=dbSNP:rs60660268,g1000:0.267572; 3 148872987 chr3:SNP:920 G A 250 . DP=32;DP4=1,18,4,9;AD=19,13;TYPE=SNP;DBXREF=dbSNP:rs6440589,g1000:0.490216,esp5400:0.520357,ExAC:0.456,clinvar:rs6440589|2; 3 148878243 chr3:SNP:921 A G 116 low_coverage;off_target DP=9;DP4=0,4,0,5;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs73166808,g1000:0.155152; 3 148879878 chr3:SNP:922 A G 835 off_target DP=71;DP4=21,11,25,13;AD=32,38;TYPE=SNP;DBXREF=dbSNP:rs61615092,g1000:0.43131; 3 148881673 chr3:SNP:923 C T 668 . DP=56;DP4=12,12,14,18;AD=24,32;TYPE=SNP;DBXREF=dbSNP:rs3732557,g1000:0.155351,esp5400:0.142113,ExAC:0.187,clinvar:rs3732557|2; 3 148885077 chr3:SNP:924 C T 309 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2681092,g1000:0.479633,esp5400:0.47129,ExAC:0.379,clinvar:rs2681092|2; 3 148885851 chr3:SNP:925 G A 425 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs2681096,g1000:0.990815; 3 148896430 chr3:SNP:926 A G 855 off_target DP=65;DP4=13,13,19,20;AD=26,39;TYPE=SNP;DBXREF=dbSNP:rs16861582,g1000:0.342252,esp5400:0.329552,ExAC:0.295,clinvar:rs16861582|2; 3 148916235 chr3:SNP:927 T A 1103 . DP=119;DP4=31,35,19,34;AD=66,53;TYPE=SNP;DBXREF=dbSNP:rs701753,g1000:0.86222,esp5400:0.850961,ExAC:0.916,clinvar:rs701753|2,MutationTaster:0; 3 148930054 chr3:SNP:928 T C 184 low_coverage;off_target DP=14;DP4=6,0,8,0;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs701750,g1000:0.997604; 3 148930079 chr3:SNP:929 C A 232 low_coverage;off_target DP=19;DP4=8,1,10,0;AD=9,10;TYPE=SNP;DBXREF=dbSNP:rs34626625,g1000:0.139577; 3 148930096 chr3:SNP:930 T A 162 low_coverage;off_target DP=15;DP4=7,0,7,1;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs34300334,g1000:0.142372; 3 148930218 chr3:SNP:931 G A 711 off_target DP=45;DP4=10,4,15,16;AD=14,31;TYPE=SNP;DBXREF=dbSNP:rs17847023,g1000:0.139377,esp5400:0.064324,ExAC:0.128; 3 148939393 chr3:SNP:932 C T 120 low_coverage;off_target DP=12;DP4=3,3,3,3;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs3736282,g1000:0.138179,esp5400:0.07072,ExAC:0.13; 3 148939861 chr3:SNP:933 T C 1124 off_target DP=121;DP4=38,29,26,28;AD=67,54;TYPE=SNP;DBXREF=dbSNP:rs17838831,g1000:0.203874,ExAC:0.048; 3 148940018 chr3:SNP:934 A G 249 off_target DP=30;DP4=0,18,0,12;AD=18,12;TYPE=SNP;DBXREF=dbSNP:rs701749,g1000:0.949081; 3 150645351 chr3:SNP:935 G A 1326 . DP=50;DP4=0,0,18,32;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs4680058,g1000:0.777756,ExAC:0.578; 3 150645408 chr3:SNP:936 G A 1119 . DP=41;DP4=0,0,10,31;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs1456138,g1000:0.776757,ExAC:0.55; 3 150663450 chr3:SNP:937 T C 283 . DP=39;DP4=12,11,6,9;AD=23,15;TYPE=SNP;DBXREF=dbSNP:rs6806039,g1000:0.894768,ExAC:0.917; 3 150690566 chr3:SNP:938 T C 2083 . DP=81;DP4=0,0,18,63;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs3796240,g1000:0.469249,ExAC:0.512; 3 151463421 chr3:SNP:939 G T 2495 . DP=96;DP4=0,0,46,49;AD=0,95;TYPE=SNP;DBXREF=dbSNP:rs1972977,g1000:0.706669,esp5400:0.700446,ExAC:0.672,MutationTaster:0; 3 151463493 chr3:SNP:940 A G 125 low_coverage;off_target DP=16;DP4=2,8,0,6;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs1550964,g1000:0.155152,esp5400:0.09946,ExAC:0.12; 3 151532226 chr3:SNP:941 G A 345 low_coverage;off_target DP=13;DP4=0,0,3,10;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2293003,g1000:0.512979; 3 151532230 chr3:SNP:942 C T 335 low_coverage;off_target DP=13;DP4=0,0,3,10;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2293002,g1000:0.513179; 3 151535422 chr3:SNP:943 G A 451 low_coverage;off_target DP=17;DP4=0,0,4,13;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2271942,g1000:0.738219,esp5400:0.7876,ExAC:0.759; 3 151537922 chr3:SNP:944 T A 225 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2271941,g1000:0.505791; 3 151538039 chr3:SNP:945 T C 819 off_target DP=30;DP4=0,0,30,0;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2271940,g1000:0.555911; 3 151542408 chr3:INDEL:62 AAAAC A 2081 off_target DP=79;DP4=2,0,56,20;AD=2,76;TYPE=INDEL;DBXREF=dbSNP:rs148745568,g1000:0.734425,ExAC:0.736; 3 151542737 chr3:SNP:946 G A 206 low_coverage;off_target DP=8;DP4=0,0,0,8;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs13098550,g1000:0.734625; 3 151542749 chr3:INDEL:63 CTATT C 365 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=INDEL;DBXREF=dbSNP:rs151253803,g1000:0.734625; 3 151542829 chr3:SNP:947 C T 319 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs13098426,g1000:0.734625; 3 151545236 chr3:INDEL:64 TAA T 182 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=INDEL;DBXREF=dbSNP:rs10579932,g1000:0.734425; 3 151545318 chr3:SNP:948 A T 901 off_target DP=33;DP4=0,0,27,6;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2410837,g1000:0.734425,esp5400:0.747396,ExAC:0.744; 3 151545321 chr3:INDEL:65 GTTTT GTTT 399 off_target DP=36;DP4=0,0,29,7;AD=0,36;TYPE=INDEL;DBXREF=dbSNP:rs11306821,ExAC:0.744; 3 151545323 chr3:SNP:949 T G 796 off_target DP=30;DP4=0,0,24,6;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs62272918; 3 151545601 chr3:SNP:950 G A 574 . DP=21;DP4=0,0,7,14;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1803155,g1000:0.734425,esp5400:0.779338,ExAC:0.758,MutationTaster:1; 3 151546041 chr3:SNP:951 G A 847 off_target DP=31;DP4=0,0,2,29;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs1042201,g1000:0.484625; 3 153994502 chr3:SNP:952 T C 445 off_target DP=61;DP4=30,8,20,3;AD=38,23;TYPE=SNP;DBXREF=dbSNP:rs355787,g1000:0.674321,esp5400:0.652724,ExAC:0.721; 3 154007403 chr3:SNP:953 T C 217 off_target DP=37;DP4=25,0,11,1;AD=25,12;TYPE=SNP;DBXREF=dbSNP:rs114233358,g1000:0.00139776; 3 154007682 chr3:SNP:954 G C 223 low_coverage;off_target DP=17;DP4=1,6,0,10;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs355758,g1000:0.659145; 3 154018887 chr3:SNP:955 G C 587 . DP=45;DP4=12,7,16,10;AD=19,26;TYPE=SNP;DBXREF=dbSNP:rs9438,g1000:0.414337,esp5400:0.388548,ExAC:0.402,MutationTaster:0.956; 3 154021063 chr3:SNP:956 G A 223 low_coverage;off_target DP=17;DP4=4,3,6,4;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs355756,g1000:0.673522,esp5400:0.702055; 3 154024165 chr3:SNP:957 T C 272 off_target DP=38;DP4=8,14,8,8;AD=22,16;TYPE=SNP;DBXREF=dbSNP:rs355754,g1000:0.422524; 3 154032717 chr3:INDEL:66 G GA 398 low_coverage;off_target DP=16;DP4=1,0,15,0;AD=1,15;TYPE=INDEL;DBXREF=dbSNP:rs5853690,g1000:0.956669; 3 154802742 chr3:SNP:958 T G 286 low_coverage;off_target DP=16;DP4=3,1,11,1;AD=4,12;TYPE=SNP;DBXREF=dbSNP:rs28617565,g1000:0.107827; 3 154862390 chr3:SNP:959 T A 437 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs6797911,g1000:0.416733; 3 155551990 chr3:SNP:960 G A 186 low_coverage;off_target DP=12;DP4=0,4,0,8;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs6809229,g1000:0.327875; 3 157841531 chr3:SNP:961 G A 266 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6789448,g1000:0.747404; 3 158362441 chr3:SNP:962 T C 396 . DP=43;DP4=16,7,10,10;AD=23,20;TYPE=SNP;DBXREF=dbSNP:rs1864507,g1000:0.583067,esp5400:0.603022,ExAC:0.494; 3 158362526 chr3:SNP:963 A G 447 off_target DP=43;DP4=7,14,8,14;AD=21,22;TYPE=SNP;DBXREF=dbSNP:rs1864506,g1000:0.415335,esp5400:0.444046,ExAC:0.31; 3 158362588 chr3:SNP:964 C G 278 off_target DP=22;DP4=2,7,3,10;AD=9,13;TYPE=SNP;DBXREF=dbSNP:rs1864505,g1000:0.415535; 3 158366900 chr3:SNP:965 G A 554 . DP=69;DP4=11,29,7,22;AD=40,29;TYPE=SNP;DBXREF=dbSNP:rs2303909,g1000:0.583267,esp5400:0.601134,ExAC:0.547,MutationTaster:1; 3 158369798 chr3:SNP:966 A G 376 off_target DP=37;DP4=14,4,18,0;AD=18,18;TYPE=SNP;DBXREF=dbSNP:rs9810874,g1000:0.408946; 3 158372477 chr3:SNP:967 C T 233 off_target DP=33;DP4=9,12,2,10;AD=21,12;TYPE=SNP;DBXREF=dbSNP:rs62286656,g1000:0.343251,esp5400:0.371827; 3 158372502 chr3:SNP:968 T C 222 off_target DP=23;DP4=7,5,2,9;AD=12,11;TYPE=SNP;DBXREF=dbSNP:rs9884039,g1000:0.408946; 3 158378836 chr3:SNP:969 A G 333 low_coverage;off_target DP=17;DP4=0,3,2,12;AD=3,14;TYPE=SNP;DBXREF=dbSNP:rs2291594,g1000:0.117212; 3 158409262 chr3:SNP:970 C T 348 . DP=33;DP4=6,10,7,10;AD=16,17;TYPE=SNP;DBXREF=dbSNP:rs1047355,g1000:0.409145,esp5400:0.451562,ExAC:0.366; 3 159713087 chr3:SNP:971 T C 204 off_target DP=27;DP4=17,0,10,0;AD=17,10;TYPE=SNP;DBXREF=dbSNP:rs2243136,g1000:0.108427; 3 159713352 chr3:SNP:972 G A 990 . DP=72;DP4=5,21,9,37;AD=26,46;TYPE=SNP;DBXREF=dbSNP:rs201969708,g1000:0.000599042,esp5400:0.000651,ExAC:0.000313; 3 159976432 chr3:SNP:973 G A 132 . DP=36;DP4=10,15,0,8;AD=25,8;TYPE=SNP;DBXREF=dbSNP:rs752574778,ExAC:2.472e-05; 3 160003677 chr3:SNP:974 T C 586 off_target DP=57;DP4=17,11,13,16;AD=28,29;TYPE=SNP;DBXREF=dbSNP:rs2275151,g1000:0.158147,esp5400:0.193497,ExAC:0.225; 3 160021681 chr3:SNP:975 G A 378 off_target DP=28;DP4=9,2,13,4;AD=11,17;TYPE=SNP;DBXREF=dbSNP:rs4680576,g1000:0.441294,esp5400:0.535481,ExAC:0.488; 3 160025238 chr3:SNP:976 G A 117 low_coverage;off_target DP=10;DP4=5,0,5,0;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs6791056,g1000:0.305911; 3 160037904 chr3:SNP:977 G A 723 off_target DP=28;DP4=0,1,0,27;AD=1,27;TYPE=SNP;DBXREF=dbSNP:rs2152425,g1000:0.486422; 3 164714532 chr3:SNP:978 C T 728 . DP=29;DP4=1,0,11,17;AD=1,28;TYPE=SNP;DBXREF=dbSNP:rs4855271,g1000:0.909744,esp5400:0.923423,ExAC:0.906,MutationTaster:0; 3 164733721 chr3:SNP:979 G A 372 low_coverage;off_target DP=14;DP4=0,0,7,7;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2290738,g1000:0.69349,esp5400:0.712772,ExAC:0.757; 3 164758630 chr3:SNP:980 G A 901 off_target DP=33;DP4=0,0,27,6;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs13099130,g1000:0.610623; 3 164764719 chr3:SNP:981 C A 1432 . DP=54;DP4=0,0,43,11;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs9838509,g1000:0.608626,esp5400:0.560513,ExAC:0.61; 3 164765011 chr3:SNP:982 G A 451 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs9814939,g1000:0.602835; 3 164766807 chr3:INDEL:67 T TAA 583 off_target DP=36;DP4=9,0,20,4;AD=9,24;TYPE=INDEL;DBXREF=dbSNP:rs200218470,g1000:0.613419; 3 164766808 chr3:INDEL:68 TC T 523 off_target DP=30;DP4=1,0,20,4;AD=1,24;TYPE=INDEL;DBXREF=dbSNP:rs529412592,g1000:0.613419; 3 164766816 chr3:SNP:983 C A 689 off_target DP=33;DP4=0,0,16,14;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs9821196,g1000:0.614018; 3 164766835 chr3:SNP:984 T C 884 off_target DP=37;DP4=0,0,20,16;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs9841237,g1000:0.633786; 3 164767148 chr3:SNP:985 T C 642 off_target DP=25;DP4=0,1,0,24;AD=1,24;TYPE=SNP;DBXREF=dbSNP:rs9290253,g1000:0.633786; 3 164772957 chr3:SNP:986 C T 1934 off_target DP=73;DP4=0,0,42,31;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs9290256,g1000:0.61901,esp5400:0.563674,ExAC:0.613; 3 164773057 chr3:SNP:987 G A 2208 . DP=81;DP4=0,0,33,48;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs9290257,g1000:0.61901,esp5400:0.563581,ExAC:0.614; 3 164773302 chr3:SNP:988 G A 239 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs9857996,g1000:0.616813; 3 164776913 chr3:INDEL:69 C CAT 1718 off_target DP=87;DP4=3,5,40,28;AD=8,68;TYPE=INDEL;DBXREF=dbSNP:rs60170840,g1000:0.61881,ExAC:0.61; 3 164776913 chr3:SNP:989 C T 108 low_variant_fraction;off_target DP=74;DP4=2,5,6,3;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs200614745,g1000:0.000599042,esp5400:0.000279,ExAC:9.08e-05; 3 164777677 chr3:SNP:990 T G 2304 off_target DP=87;DP4=0,0,63,24;AD=0,87;TYPE=SNP;DBXREF=dbSNP:rs9290259,g1000:0.617212,esp5400:0.562093,ExAC:0.613; 3 164781368 chr3:SNP:991 G A 1262 off_target DP=49;DP4=0,0,16,33;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs11718901,g1000:0.61901,esp5400:0.566732,ExAC:0.607; 3 164783165 chr3:SNP:992 T C 2161 . DP=81;DP4=0,1,12,68;AD=1,80;TYPE=SNP;DBXREF=dbSNP:rs9283633,g1000:0.616014,esp5400:0.559584,ExAC:0.613,MutationTaster:0.094; 3 164785338 chr3:SNP:993 G A 644 off_target DP=25;DP4=0,0,7,18;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs9865476,g1000:0.635982; 3 164786382 chr3:SNP:994 C A 266 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs9758479,g1000:0.619609; 3 164786396 chr3:SNP:995 T C 425 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs9754967,g1000:0.619609; 3 164786413 chr3:SNP:996 A G 557 off_target DP=21;DP4=0,0,19,2;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs9756068,g1000:0.619409; 3 164786629 chr3:INDEL:70 TAAAAAAAA TAAAAAAA 259 . DP=35;DP4=1,0,15,18;AD=1,33;TYPE=INDEL;DBXREF=dbSNP:rs11313475,g1000:0.636182,ExAC:0.618; 3 164792631 chr3:SNP:997 A G 372 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs9865161,g1000:0.609225; 3 164792686 chr3:SNP:998 A C 258 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6783643,g1000:0.61901; 3 164793541 chr3:SNP:999 G T 375 low_coverage;off_target DP=15;DP4=0,0,11,4;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs7432386,g1000:0.636182; 3 165491280 chr3:SNP:1000 C T 157 . DP=26;DP4=8,10,4,4;AD=18,8;TYPE=SNP;DBXREF=dbSNP:rs1803274,g1000:0.158546,esp5400:0.198252,ExAC:0.181,clinvar:rs1803274|2,MutationTaster:0.067; 3 167164319 chr3:SNP:1001 T A 155 off_target DP=20;DP4=4,8,2,6;AD=12,8;TYPE=SNP;DBXREF=dbSNP:rs2272139,g1000:0.00419329,esp5400:0.003722,ExAC:0.004202; 3 167167100 chr3:SNP:1002 C T 354 . DP=46;DP4=16,12,13,5;AD=28,18;TYPE=SNP;DBXREF=dbSNP:rs6803996,g1000:0.173522,esp5400:0.207752,ExAC:0.231; 3 167167186 chr3:SNP:1003 T A 499 . DP=49;DP4=12,13,9,15;AD=25,24;TYPE=SNP;DBXREF=dbSNP:rs6770577,g1000:0.370807,esp5400:0.361684,ExAC:0.388; 3 167184878 chr3:SNP:1004 T C 750 . DP=71;DP4=22,12,25,12;AD=34,37;TYPE=SNP;DBXREF=dbSNP:rs9841174,g1000:0.41254,esp5400:0.373838,ExAC:0.396,MutationTaster:0.004; 3 167189607 chr3:SNP:1005 A C 665 . DP=65;DP4=9,23,13,20;AD=32,33;TYPE=SNP;DBXREF=dbSNP:rs17246389,g1000:0.167732,esp5400:0.198438,ExAC:0.226,MutationTaster:0; 3 167508062 chr3:SNP:1006 T C 301 low_coverage;off_target DP=19;DP4=6,0,13,0;AD=6,13;TYPE=SNP;DBXREF=dbSNP:rs13090836,g1000:0.413538; 3 167510214 chr3:SNP:1007 A G 262 low_coverage;off_target DP=19;DP4=7,0,12,0;AD=7,12;TYPE=SNP;DBXREF=dbSNP:rs7433287,g1000:0.413738; 3 170715830 chr3:SNP:1008 G A 2779 . DP=105;DP4=0,0,42,63;AD=0,105;TYPE=SNP;DBXREF=dbSNP:rs5398,g1000:0.372604,esp5400:0.396728,ExAC:0.315,clinvar:rs5398|255; 3 170724883 chr3:SNP:1009 T C 1091 off_target DP=44;DP4=0,0,31,12;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs8192675,g1000:0.41234; 3 170732599 chr3:SNP:1010 G A 437 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs7356034,g1000:0.330871; 3 172166033 chr3:SNP:1011 G A 747 . DP=101;DP4=23,38,5,35;AD=61,40;TYPE=SNP;DBXREF=dbSNP:rs495225,g1000:0.540136,esp5400:0.636228,ExAC:0.654,clinvar:rs495225|2; 3 172224303 chr3:SNP:1012 A G 2083 . DP=81;DP4=0,0,44,37;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs1131532,g1000:0.667732,esp5400:0.711563,ExAC:0.66; 3 172224769 chr3:INDEL:71 GC G 1151 off_target DP=64;DP4=6,5,20,30;AD=11,50;TYPE=INDEL;DBXREF=dbSNP:rs111284464,g1000:0.663339; 3 172224771 chr3:SNP:1013 T A 1129 off_target DP=50;DP4=4,1,16,28;AD=5,44;TYPE=SNP;DBXREF=dbSNP:rs17848019,g1000:0.663339; 3 172227199 chr3:SNP:1014 C T 504 low_coverage;off_target DP=19;DP4=0,0,0,19;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs3815496,g1000:0.683107; 3 172631617 chr3:SNP:1015 A T 137 low_coverage;off_target DP=11;DP4=2,3,2,4;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs115605249,g1000:0.0071885; 3 172634025 chr3:INDEL:72 T TTG 134 low_coverage;off_target DP=14;DP4=8,0,6,0;AD=8,6;TYPE=INDEL;DBXREF=dbSNP:rs141570329,g1000:0.401558; 3 172634027 chr3:SNP:1016 T G 127 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs28685083,g1000:0.137979; 3 172835125 chr3:SNP:1017 T C 10000 . DP=143;DP4=0,0,66,76;AD=0,142;TYPE=SNP;DBXREF=dbSNP:rs1515442,g1000:0.428514,esp5400:0.403142,ExAC:0.319,MutationTaster:0; 3 173525731 chr3:SNP:1018 G T 546 off_target DP=20;DP4=0,0,1,19;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1488548,g1000:0.713259; 3 173525768 chr3:SNP:1019 A G 408 off_target DP=20;DP4=0,3,0,17;AD=3,17;TYPE=SNP;DBXREF=dbSNP:rs1488547,g1000:0.530551; 3 176752202 chr3:SNP:1020 A T 114 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs1905503,g1000:0.2498; 3 176765253 chr3:SNP:1021 G A 2066 off_target DP=78;DP4=0,0,34,44;AD=0,78;TYPE=SNP;DBXREF=dbSNP:rs1201300,g1000:1,esp5400:0.999894,ExAC:1; 3 176765269 chr3:SNP:1022 T C 549 . DP=82;DP4=21,32,12,17;AD=53,29;TYPE=SNP;DBXREF=dbSNP:rs3749234,g1000:0.174521,esp5400:0.156917,ExAC:0.206; 3 176767667 chr3:INDEL:73 GTTAC G 216 low_coverage;off_target DP=15;DP4=6,0,9,0;AD=6,9;TYPE=INDEL;DBXREF=dbSNP:rs35503291; 3 176767672 chr3:SNP:1023 T G 167 low_coverage;off_target DP=12;DP4=4,0,8,0;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs2862642; 3 176767673 chr3:SNP:1024 A G 218 low_coverage;off_target DP=13;DP4=4,0,9,0;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs2862643; 3 176769608 chr3:SNP:1025 G A 302 off_target DP=23;DP4=1,8,0,14;AD=9,14;TYPE=SNP;DBXREF=dbSNP:rs1881979,g1000:0.34365; 3 178921639 chr3:SNP:1026 C A 388 off_target DP=42;DP4=3,20,3,16;AD=23,19;TYPE=SNP;DBXREF=dbSNP:rs2699895,g1000:0.517971; 3 178922274 chr3:SNP:1027 C A 576 off_target DP=57;DP4=18,12,16,11;AD=30,27;TYPE=SNP;DBXREF=dbSNP:rs2699896,g1000:0.584665,esp5400:0.667119,ExAC:0.561,clinvar:rs2699896|2; 3 178922430 chr3:SNP:1028 A G 273 off_target DP=21;DP4=4,5,4,8;AD=9,12;TYPE=SNP;DBXREF=dbSNP:rs3729679,g1000:0.517971,esp5400:0.576994; 3 178942431 chr3:SNP:1029 C G 137 low_coverage;off_target DP=15;DP4=7,1,6,1;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs2699889,g1000:0.629393; 3 178943987 chr3:INDEL:74 T TACTTG 243 low_coverage;off_target DP=10;DP4=0,1,1,8;AD=1,9;TYPE=INDEL;DBXREF=dbSNP:rs3975515,g1000:0.999401; 3 178968634 chr3:SNP:1030 C T 780 . DP=71;DP4=17,18,19,17;AD=35,36;TYPE=SNP;DBXREF=dbSNP:rs7645550,g1000:0.315296,esp5400:0.384086,ExAC:0.346,MutationTaster:0.996; 3 178976591 chr3:SNP:1031 T A 605 off_target DP=23;DP4=1,0,22,0;AD=1,22;TYPE=SNP;DBXREF=dbSNP:rs56400023,g1000:0.554513; 3 178976777 chr3:SNP:1032 C T 1467 off_target DP=57;DP4=0,1,20,36;AD=1,56;TYPE=SNP;DBXREF=dbSNP:rs11720871,g1000:0.554513,esp5400:0.410578,ExAC:0.557; 3 178976821 chr3:SNP:1033 G A 717 off_target DP=27;DP4=0,0,6,21;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs11720935,g1000:0.554313,esp5400:0.431973; 3 180334623 chr3:SNP:1034 C T 307 . DP=28;DP4=3,11,6,8;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs7612917,g1000:0.13139,esp5400:0.17956,ExAC:0.175,clinvar:rs7612917|2; 3 180365956 chr3:SNP:1035 G A 480 . DP=65;DP4=27,14,17,7;AD=41,24;TYPE=SNP;DBXREF=dbSNP:rs6769457,g1000:0.31889,esp5400:0.339879,ExAC:0.241,clinvar:rs6769457|2; 3 181430635 chr3:SNP:1036 A G 969 . DP=72;DP4=7,21,11,33;AD=28,44;TYPE=SNP;DBXREF=MutationTaster:1; 3 182735182 chr3:SNP:1037 C A 1035 off_target DP=39;DP4=0,0,15,24;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs6786878,g1000:0.953474,esp5400:0.933519; 3 182738159 chr3:SNP:1038 A C 690 off_target DP=26;DP4=0,0,0,26;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs9834143,g1000:0.917732; 3 182755209 chr3:SNP:1039 T G 1210 . DP=47;DP4=0,0,18,29;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs2270968,g1000:0.464856,esp5400:0.584031,ExAC:0.623,clinvar:rs2270968|2,MutationTaster:0.113; 3 182757084 chr3:SNP:1040 G A 506 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2270967,g1000:0.359824; 3 182775397 chr3:SNP:1041 C T 319 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs7646991,g1000:0.915136; 3 182790249 chr3:SNP:1042 G A 1555 . DP=57;DP4=0,0,24,33;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs7622479,g1000:0.915535,esp5400:0.885552,ExAC:0.929,clinvar:rs7622479|2; 3 182804385 chr3:SNP:1043 G A 319 low_coverage;off_target DP=12;DP4=0,0,10,2;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6806083,g1000:0.419529; 3 182810144 chr3:SNP:1044 T G 412 low_coverage;off_target DP=16;DP4=0,0,11,5;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs3732604; 3 182817328 chr3:SNP:1045 C G 635 off_target DP=27;DP4=0,1,2,24;AD=1,26;TYPE=SNP;DBXREF=dbSNP:rs937652,g1000:0.544928; 3 182912991 chr3:INDEL:75 TAAAAAAA TAAAAAA 123 off_target DP=65;DP4=21,14,20,10;AD=35,30;TYPE=INDEL;DBXREF=dbSNP:rs554139322,g1000:0.00359425,ExAC:0.006771; 3 182912998 chr3:SNP:1046 A T 467 off_target DP=48;DP4=11,15,17,5;AD=26,22;TYPE=SNP;DBXREF=dbSNP:rs201430372,g1000:0.00359425,ExAC:0.006771; 3 182913092 chr3:SNP:1047 T G 1493 off_target DP=58;DP4=0,0,23,35;AD=0,58;TYPE=SNP;DBXREF=dbSNP:rs577136,g1000:0.450879,esp5400:0.501024,ExAC:0.481; 3 182925404 chr3:SNP:1048 T C 2542 . DP=101;DP4=2,1,68,30;AD=3,98;TYPE=SNP;DBXREF=dbSNP:rs6804951,g1000:0.91274,esp5400:0.875813,ExAC:0.927,MutationTaster:1; 3 182925799 chr3:SNP:1049 A G 383 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6770548,g1000:0.913738; 3 182946002 chr3:SNP:1050 A G 519 low_coverage;off_target DP=19;DP4=0,0,17,2;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs6803121,g1000:0.904752; 3 182946278 chr3:INDEL:76 C CTCTTA 116 off_target DP=25;DP4=0,19,0,6;AD=19,6;TYPE=INDEL;DBXREF=dbSNP:rs142127970,g1000:0.284744; 3 182947413 chr3:SNP:1051 C G 747 off_target DP=29;DP4=0,0,27,2;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs1122143,g1000:0.240815,esp5400:0.230755,ExAC:0.263; 3 183558402 chr3:SNP:1052 C G 323 . DP=28;DP4=8,5,5,10;AD=13,15;TYPE=SNP;DBXREF=dbSNP:rs3732581,g1000:0.455471,esp5400:0.486705,ExAC:0.467,MutationTaster:1; 3 183560195 chr3:SNP:1053 A G 998 . DP=79;DP4=14,19,18,28;AD=33,46;TYPE=SNP;DBXREF=dbSNP:rs13091,g1000:0.456869,esp5400:0.487637,ExAC:0.468; 3 183560292 chr3:SNP:1054 A T 158 low_coverage;off_target DP=19;DP4=1,10,0,8;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs7652031,g1000:0.457069; 3 183580750 chr3:SNP:1055 A G 174 off_target DP=20;DP4=0,11,0,8;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs1554397,g1000:0.806709; 3 183774762 chr3:SNP:1056 C A 402 . DP=37;DP4=10,8,8,11;AD=18,19;TYPE=SNP;DBXREF=dbSNP:rs6766410,g1000:0.464657,esp5400:0.423685,ExAC:0.445,MutationTaster:0.001; 3 183774872 chr3:INDEL:77 GAA GAAA 208 low_coverage;off_target DP=16;DP4=0,0,4,12;AD=0,16;TYPE=INDEL;DBXREF=dbSNP:rs11432832,g1000:0.764976,ExAC:0.67; 3 183776469 chr3:SNP:1057 C T 630 off_target DP=26;DP4=0,0,4,21;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs7617316,g1000:0.757788; 3 183777919 chr3:SNP:1058 G A 410 low_coverage;off_target DP=15;DP4=0,0,12,3;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs6807271,g1000:0.555711,esp5400:0.50949,ExAC:0.537; 3 183778010 chr3:SNP:1059 G C 1564 . DP=59;DP4=0,0,33,26;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs6807362,g1000:0.55631,esp5400:0.511154,ExAC:0.544,MutationTaster:0; 3 183778298 chr3:SNP:1060 G A 206 low_coverage;off_target DP=8;DP4=0,0,1,7;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs6807670,g1000:0.621006; 3 183815439 chr3:SNP:1061 A G 902 off_target DP=34;DP4=0,0,5,29;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs6765267,g1000:0.514776; 3 183818221 chr3:INDEL:78 AGGG AGG 127 . DP=61;DP4=25,11,15,9;AD=36,24;TYPE=INDEL;DBXREF=dbSNP:rs5855015,g1000:0.0355431,ExAC:0.066; 3 183818416 chr3:SNP:1062 G A 1836 . DP=71;DP4=0,1,18,52;AD=1,70;TYPE=SNP;DBXREF=dbSNP:rs7627615,g1000:0.734225,esp5400:0.684142,ExAC:0.64,MutationTaster:0; 3 183823375 chr3:SNP:1063 C G 256 low_coverage;off_target DP=18;DP4=1,6,5,6;AD=7,11;TYPE=SNP;DBXREF=dbSNP:rs56137724,g1000:0.0121805; 3 183823576 chr3:SNP:1064 T C 1405 . DP=53;DP4=0,0,43,10;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs4912524,g1000:0.999201,esp5400:0.99749,ExAC:0.997; 3 184037533 chr3:SNP:1065 A G 1592 . DP=60;DP4=0,0,28,31;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs13319149,g1000:0.999201,esp5400:0.997675,ExAC:0.997,MutationTaster:0.033; 3 184039666 chr3:SNP:1066 A G 641 . DP=55;DP4=14,11,16,14;AD=25,30;TYPE=SNP;DBXREF=dbSNP:rs2178403,g1000:0.782348,esp5400:0.82348,ExAC:0.755,MutationTaster:0; 3 184046355 chr3:SNP:1067 C T 404 off_target DP=25;DP4=7,1,11,6;AD=8,17;TYPE=SNP;DBXREF=dbSNP:rs1879244,g1000:0.778554; 3 184049143 chr3:SNP:1068 C T 957 . DP=68;DP4=12,13,18,25;AD=25,43;TYPE=SNP;DBXREF=dbSNP:rs76779558,g1000:0.0141773,esp5400:0.017289,ExAC:0.019; 3 184070675 chr3:SNP:1069 A G 1749 off_target DP=66;DP4=0,0,21,45;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs3749223,g1000:0.734425; 3 184071063 chr3:SNP:1070 G C 1995 . DP=77;DP4=1,0,51,25;AD=1,76;TYPE=SNP;DBXREF=dbSNP:rs9820367,g1000:0.461262,esp5400:0.59407,ExAC:0.489,clinvar:rs9820367|0,MutationTaster:1; 3 184075047 chr3:SNP:1071 A G 1652 . DP=64;DP4=0,0,34,29;AD=0,63;TYPE=SNP;DBXREF=dbSNP:rs2228291,g1000:0.355032,esp5400:0.307585,ExAC:0.291; 3 184091383 chr3:INDEL:79 T TGGAA 320 off_target DP=52;DP4=14,19,4,12;AD=33,16;TYPE=INDEL;DBXREF=dbSNP:rs55827759,g1000:0.028155,ExAC:0.031,clinvar:rs55827759|2; 3 185226396 chr3:SNP:1072 A G 137 low_coverage;off_target DP=11;DP4=5,0,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs6788865,g1000:0.358027; 3 185226492 chr3:SNP:1073 C T 239 off_target DP=30;DP4=12,6,9,3;AD=18,12;TYPE=SNP;DBXREF=dbSNP:rs55854644,g1000:0.115016; 3 185229464 chr3:SNP:1074 T C 551 . DP=69;DP4=16,25,13,15;AD=41,28;TYPE=SNP;DBXREF=dbSNP:rs61730237,g1000:0.343251,esp5400:0.417178,ExAC:0.4; 3 185232169 chr3:SNP:1075 G A 457 off_target DP=40;DP4=12,6,14,8;AD=18,22;TYPE=SNP;DBXREF=dbSNP:rs1837882,g1000:0.354034,esp5400:0.43435,ExAC:0.404; 3 186337713 chr3:SNP:1076 T C 1246 . DP=47;DP4=0,0,16,31;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs4917,g1000:0.735423,esp5400:0.68721,ExAC:0.683,clinvar:rs4917|255,MutationTaster:0; 3 186338382 chr3:SNP:1077 G C 850 . DP=33;DP4=0,0,18,15;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs4918,g1000:0.713658,esp5400:0.658673,ExAC:0.675,clinvar:rs4918|255,MutationTaster:0; 3 186338425 chr3:SNP:1078 A C 1432 . DP=54;DP4=0,0,34,20;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs1071592,g1000:0.814696,esp5400:0.781186,ExAC:0.766; 3 186386664 chr3:INDEL:80 TAAAAAAAAA TAAAAAAAAAA 103 off_target DP=21;DP4=2,1,13,4;AD=3,17;TYPE=INDEL;DBXREF=dbSNP:rs5855108; 3 186395180 chr3:SNP:1079 T C 1946 . DP=78;DP4=0,0,24,54;AD=0,78;TYPE=SNP;DBXREF=dbSNP:rs7629680,g1000:0.998403,esp5400:0.998141,ExAC:0.999; 3 186395436 chr3:SNP:1080 C T 529 . DP=50;DP4=15,9,18,8;AD=24,26;TYPE=SNP;DBXREF=dbSNP:rs1042445,g1000:0.273163,esp5400:0.234337,ExAC:0.271,MutationTaster:0; 3 186395572 chr3:SNP:1081 A T 656 . DP=78;DP4=29,16,18,15;AD=45,33;TYPE=SNP;DBXREF=dbSNP:rs1042464,g1000:0.650559,esp5400:0.550753,ExAC:0.552,MutationTaster:0; 3 186435370 chr3:SNP:1082 G A 183 . DP=26;DP4=11,5,3,7;AD=16,10;TYPE=SNP;DBXREF=dbSNP:rs1050274,g1000:0.389976,esp5400:0.368749,ExAC:0.347; 3 186435561 chr3:SNP:1083 G A 104 low_coverage;off_target DP=12;DP4=1,6,0,5;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs13072823,g1000:0.152955,esp5400:0.160332,ExAC:0.137; 3 186437944 chr3:SNP:1084 T C 1055 . DP=94;DP4=18,26,13,37;AD=44,50;TYPE=SNP;DBXREF=dbSNP:rs5029980,g1000:0.0974441,esp5400:0.097695,ExAC:0.121; 3 186440243 chr3:SNP:1085 G A 852 . DP=82;DP4=21,20,27,14;AD=41,41;TYPE=SNP;DBXREF=dbSNP:rs1469859,g1000:0.24401,esp5400:0.274865,ExAC:0.302; 3 186440483 chr3:SNP:1086 T C 337 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1648714,g1000:0.740016; 3 186443018 chr3:SNP:1087 T C 1724 . DP=67;DP4=0,0,40,27;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs1656922,g1000:0.524161,esp5400:0.545362,ExAC:0.537,MutationTaster:0; 3 186449194 chr3:SNP:1088 A G 153 low_coverage;off_target DP=15;DP4=8,0,7,0;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs1648697,g1000:0.39377; 3 186459227 chr3:SNP:1089 A G 120 low_coverage;off_target DP=9;DP4=4,0,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs698078,g1000:0.413538; 3 186459927 chr3:SNP:1090 T C 599 . DP=60;DP4=22,9,18,11;AD=31,29;TYPE=SNP;DBXREF=dbSNP:rs710446,g1000:0.415335,esp5400:0.437059,ExAC:0.415,MutationTaster:1; 3 186947410 chr3:SNP:1091 C T 717 off_target DP=27;DP4=0,0,24,3;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs850318,g1000:0.937899; 3 186947801 chr3:SNP:1092 C T 125 low_coverage;off_target DP=12;DP4=0,6,0,6;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs850317,g1000:0.200679; 3 186969371 chr3:INDEL:81 CG CGG 171 low_coverage;off_target DP=18;DP4=8,1,7,2;AD=9,9;TYPE=INDEL;DBXREF=dbSNP:rs3214401,g1000:0.248403,ExAC:0.256; 3 186969390 chr3:SNP:1093 G T 251 off_target DP=22;DP4=7,3,9,3;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs78008995,g1000:0.0121805,esp5400:0.030675,ExAC:0.03; 3 186969634 chr3:SNP:1094 A G 414 off_target DP=37;DP4=2,15,6,14;AD=17,20;TYPE=SNP;DBXREF=dbSNP:rs698092,g1000:0.420128; 3 186980264 chr3:SNP:1095 C T 160 off_target DP=26;DP4=15,2,9,0;AD=17,9;TYPE=SNP;DBXREF=dbSNP:rs710468,g1000:0.28095; 3 187003495 chr3:SNP:1096 A G 301 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs698105,g1000:0.752796; 3 187387896 chr3:SNP:1097 T C 182 off_target DP=22;DP4=11,2,8,1;AD=13,9;TYPE=SNP;DBXREF=dbSNP:rs4988513,g1000:0.17492,esp5400:0.170864,ExAC:0.093; 3 187387911 chr3:SNP:1098 A G 195 off_target DP=24;DP4=11,3,8,2;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs34477564,g1000:0.147165,esp5400:0.142471,ExAC:0.086; 3 188123819 chr3:SNP:1099 T G 584 off_target DP=22;DP4=0,0,18,4;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs3732911,g1000:0.759984; 3 188202550 chr3:SNP:1100 A T 1159 off_target DP=45;DP4=0,0,11,34;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs2067078,g1000:0.73123; 3 188202582 chr3:SNP:1101 G T 574 off_target DP=21;DP4=0,0,0,21;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs1559814,g1000:0.917931; 3 188327461 chr3:SNP:1102 C T 570 . DP=44;DP4=11,7,18,8;AD=18,26;TYPE=SNP;DBXREF=dbSNP:rs1059380,g1000:0.586462,esp5400:0.627905,ExAC:0.584; 3 188426084 chr3:SNP:1103 G A 617 . DP=63;DP4=17,16,18,12;AD=33,30;TYPE=SNP;DBXREF=dbSNP:rs149905073,g1000:0.00279553,esp5400:0.007343,ExAC:0.008574; 3 188426256 chr3:SNP:1104 A G 294 off_target DP=25;DP4=1,10,5,9;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs9877192,g1000:0.121206,ExAC:0.201; 3 188590358 chr3:SNP:1105 C T 290 low_coverage;off_target DP=12;DP4=0,0,9,2;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4687001,g1000:0.946486; 3 188590446 chr3:SNP:1106 A G 195 . DP=28;DP4=10,8,6,4;AD=18,10;TYPE=SNP;DBXREF=dbSNP:rs1136644,g1000:0.400359,esp5400:0.425823,ExAC:0.473; 3 189349247 chr3:SNP:1107 A T 820 off_target DP=96;DP4=34,22,28,12;AD=56,40;TYPE=SNP;DBXREF=dbSNP:rs28673064,g1000:0.48762,esp5400:0.460421; 3 189507518 chr3:INDEL:82 C CAGAG 139 low_coverage;off_target DP=12;DP4=5,0,6,0;AD=5,6;TYPE=INDEL;DBXREF=dbSNP:rs34201045; 3 189584563 chr3:SNP:1108 C T 171 . DP=24;DP4=6,9,3,6;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs33979049,g1000:0.0145767,esp5400:0.014036,ExAC:0.017,clinvar:rs33979049|2; 3 189604149 chr3:SNP:1109 T G 199 low_coverage;off_target DP=18;DP4=5,4,8,1;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs1554131,g1000:0.698882,esp5400:0.779141,ExAC:0.722,clinvar:rs1554131|2; 3 189604160 chr3:SNP:1110 T C 151 low_coverage;off_target DP=16;DP4=6,3,7,0;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs1345186,g1000:0.699481,esp5400:0.779141,ExAC:0.723,clinvar:rs1345186|2; 3 189689904 chr3:SNP:1111 A G 114 low_coverage;off_target DP=11;DP4=0,6,1,4;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs710543,g1000:0.903554; 3 189690861 chr3:SNP:1112 T A 290 low_coverage;off_target DP=17;DP4=0,5,1,11;AD=5,12;TYPE=SNP;DBXREF=dbSNP:rs710545,g1000:0.88099,esp5400:0.902752,ExAC:0.894; 3 189705542 chr3:SNP:1113 A G 205 off_target DP=20;DP4=4,6,4,6;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs3114672,g1000:0.776158; 3 189706748 chr3:SNP:1114 G A 354 . DP=46;DP4=15,13,10,8;AD=28,18;TYPE=SNP;DBXREF=dbSNP:rs546454555,g1000:0.000199681,ExAC:6.589e-05; 3 189712010 chr3:SNP:1115 G A 661 . DP=100;DP4=36,30,25,9;AD=66,34;TYPE=SNP;DBXREF=dbSNP:rs1719600,g1000:0.161542,esp5400:0.201431,ExAC:0.207; 3 189712089 chr3:SNP:1116 G A 484 off_target DP=59;DP4=13,20,7,19;AD=33,26;TYPE=SNP;DBXREF=dbSNP:rs1719599,g1000:0.760982,esp5400:0.702864,ExAC:0.783; 3 189712090 chr3:SNP:1117 G A 490 off_target DP=55;DP4=11,19,7,18;AD=30,25;TYPE=SNP;DBXREF=dbSNP:rs1719598,g1000:0.760982,esp5400:0.702585,ExAC:0.783; 3 189712094 chr3:INDEL:83 A AAAAC 275 off_target DP=68;DP4=17,30,1,14;AD=47,15;TYPE=INDEL;DBXREF=dbSNP:rs139834656,ExAC:0.492; 3 189837993 chr3:SNP:1118 G A 172 low_coverage;off_target DP=14;DP4=6,0,7,1;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs710596,g1000:0.532548,esp5400:0.49209,ExAC:0.469; 3 189838018 chr3:SNP:1119 G T 132 off_target DP=20;DP4=11,2,7,0;AD=13,7;TYPE=SNP;DBXREF=dbSNP:rs35346557,g1000:0.203674,esp5400:0.235491,ExAC:0.193; 3 190026383 chr3:SNP:1120 C T 185 low_coverage;off_target DP=18;DP4=0,9,0,9;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs12629166,g1000:0.715056; 3 190030680 chr3:SNP:1121 A G 421 . DP=64;DP4=15,24,12,11;AD=39,23;TYPE=SNP;DBXREF=dbSNP:rs9869263,g1000:0.811102,esp5400:0.820134,ExAC:0.833,clinvar:rs9869263|2; 3 190126178 chr3:SNP:1122 A G 892 . DP=84;DP4=25,15,24,20;AD=40,44;TYPE=SNP;DBXREF=dbSNP:rs201367228,g1000:0.000399361,esp5400:9.3e-05,ExAC:0.0003459,MutationTaster:1; 3 193128900 chr3:SNP:1123 G A 490 off_target DP=65;DP4=18,21,13,13;AD=39,26;TYPE=SNP;DBXREF=dbSNP:rs61401139,g1000:0.151957,esp5400:0.164835,ExAC:0.19; 3 193153562 chr3:SNP:1124 T C 435 off_target DP=34;DP4=4,9,10,11;AD=13,21;TYPE=SNP;DBXREF=dbSNP:rs1996735,g1000:0.733826,esp5400:0.766313,ExAC:0.756; 3 193160474 chr3:SNP:1125 A T 472 off_target DP=33;DP4=1,11,4,17;AD=12,21;TYPE=SNP;DBXREF=dbSNP:rs9849997,g1000:0.708466; 3 193355074 chr3:SNP:1126 T C 813 . DP=76;DP4=18,18,20,20;AD=36,40;TYPE=SNP;DBXREF=dbSNP:rs166850,g1000:0.922923,esp5400:0.875256,ExAC:0.872,clinvar:rs166850|2; 3 195295661 chr3:SNP:1127 C T 292 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs7659,g1000:0.459065; 3 195295702 chr3:INDEL:84 T TGGCG 495 off_target DP=23;DP4=4,0,19,0;AD=4,19;TYPE=INDEL;DBXREF=dbSNP:rs146445395,g1000:0.13778; 3 195295708 chr3:SNP:1128 G T 434 off_target DP=20;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs111354824; 3 195300676 chr3:SNP:1129 A G 118 off_target DP=20;DP4=12,2,6,0;AD=14,6;TYPE=SNP;DBXREF=dbSNP:rs1568566,g1000:0.872404,esp5400:0.883993,ExAC:0.832; 3 195475989 chr3:SNP:1130 G A 228 off_target DP=24;DP4=2,11,0,11;AD=13,11;TYPE=SNP;DBXREF=dbSNP:rs7621695; 3 195477791 chr3:SNP:1131 G A 566 . DP=38;DP4=7,6,16,9;AD=13,25;TYPE=SNP;DBXREF=dbSNP:rs2291652,g1000:0.40615,esp5400:0.343651,ExAC:0.442; 3 195479256 chr3:SNP:1132 T C 10000 . DP=126;DP4=0,0,75,51;AD=0,126;TYPE=SNP;DBXREF=dbSNP:rs2258447,g1000:0.812101,esp5400:0.83324,ExAC:0.881; 3 195484244 chr3:SNP:1133 G A 778 off_target DP=79;DP4=6,34,6,33;AD=40,39;TYPE=SNP;DBXREF=dbSNP:rs2550270,g1000:0.659345,esp5400:0.696412,ExAC:0.741; 3 195487737 chr3:SNP:1134 A G 190 off_target DP=36;DP4=14,12,7,3;AD=26,10;TYPE=SNP;DBXREF=dbSNP:rs2246771,g1000:0.691294,esp5400:0.712121,ExAC:0.692; 3 195489009 chr3:SNP:1135 C A 912 . DP=65;DP4=12,12,23,18;AD=24,41;TYPE=SNP;DBXREF=dbSNP:rs2246901,g1000:0.63099,esp5400:0.636169,ExAC:0.659,MutationTaster:0; 3 195489067 chr3:SNP:1136 C G 680 . DP=53;DP4=8,13,17,15;AD=21,32;TYPE=SNP;DBXREF=dbSNP:rs2246980,g1000:0.424321,esp5400:0.366499,ExAC:0.431; 3 195489669 chr3:SNP:1137 C T 457 off_target DP=42;DP4=15,6,17,4;AD=21,21;TYPE=SNP;DBXREF=dbSNP:rs2550263,g1000:0.590256; 3 195490284 chr3:SNP:1138 T C 333 off_target DP=25;DP4=9,1,12,3;AD=10,15;TYPE=SNP;DBXREF=dbSNP:rs2550261,g1000:0.660942,esp5400:0.695974,ExAC:0.556; 3 195492027 chr3:SNP:1139 T C 1782 off_target DP=67;DP4=0,0,23,43;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs11926236,g1000:0.989417,esp5400:0.981083,ExAC:0.977; 3 195495916 chr3:SNP:1140 G C 492 . DP=74;DP4=30,18,15,11;AD=48,26;TYPE=SNP;DBXREF=dbSNP:rs2550240,g1000:0.428714,esp5400:0.355828,ExAC:0.445,MutationTaster:0; 3 195497174 chr3:SNP:1141 C G 919 . DP=101;DP4=31,23,27,20;AD=54,47;TYPE=SNP;DBXREF=dbSNP:rs2259102,g1000:0.828275,esp5400:0.872281,ExAC:0.799,MutationTaster:0; 3 195501149 chr3:SNP:1142 C T 919 . DP=69;DP4=14,12,17,26;AD=26,43;TYPE=SNP;DBXREF=dbSNP:rs2259292,g1000:0.586262,esp5400:0.582543,ExAC:0.576,MutationTaster:0; 3 195501258 chr3:SNP:1143 T C 187 off_target DP=21;DP4=1,10,3,7;AD=11,10;TYPE=SNP;DBXREF=dbSNP:rs2259331,g1000:0.699081; 3 195778972 chr3:SNP:1144 C T 1022 . DP=96;DP4=22,25,22,27;AD=47,49;TYPE=SNP;DBXREF=dbSNP:rs1805051,g1000:0.0483227,esp5400:0.074642,ExAC:0.089; 3 195780535 chr3:SNP:1145 C T 168 low_coverage;off_target DP=15;DP4=0,7,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs9809253,g1000:0.0736821; 3 195789414 chr3:SNP:1146 T C 1141 off_target DP=43;DP4=0,0,27,16;AD=0,43;TYPE=SNP;DBXREF=dbSNP:rs2239641,g1000:0.362021,esp5400:0.492004,ExAC:0.503; 3 195789428 chr3:SNP:1147 C A 1194 off_target DP=45;DP4=0,0,26,19;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs507131,g1000:0.65615,esp5400:0.81465,ExAC:0.823; 3 195789708 chr3:SNP:1148 G T 1802 off_target DP=68;DP4=0,0,38,30;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs2239640,g1000:0.361422,esp5400:0.49182,ExAC:0.503; 3 195794788 chr3:SNP:1149 C T 116 low_coverage;off_target DP=9;DP4=3,1,5,0;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs9855973,g1000:0.0738818; 3 195798258 chr3:SNP:1150 T C 1220 . DP=46;DP4=0,0,31,15;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs480760,g1000:0.894169,esp5400:0.883436,ExAC:0.95; 3 195798522 chr3:SNP:1151 C T 628 off_target DP=23;DP4=0,0,0,23;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs9990392,g1000:0.354633; 3 195800811 chr3:SNP:1152 C T 2478 . DP=97;DP4=1,1,64,31;AD=2,95;TYPE=SNP;DBXREF=dbSNP:rs3817672,g1000:0.30631,esp5400:0.432701,ExAC:0.445,MutationTaster:0; 3 195800923 chr3:SNP:1153 G A 1084 . DP=97;DP4=28,19,22,28;AD=47,50;TYPE=SNP;DBXREF=dbSNP:rs41301359,g1000:0.00359425,esp5400:0.006228,ExAC:0.006235; 3 195801927 chr3:INDEL:85 AAAAAAAAAAAT A 136 off_target DP=28;DP4=19,1,7,0;AD=20,7;TYPE=INDEL;DBXREF=dbSNP:rs200653815,g1000:0.309305; 3 196050834 chr3:SNP:1154 C T 456 . DP=56;DP4=16,17,6,17;AD=33,23;TYPE=SNP;DBXREF=dbSNP:rs35643777,g1000:0.0483227,esp5400:0.087098,ExAC:0.072,MutationTaster:1; 3 196051131 chr3:SNP:1155 C T 285 . DP=32;DP4=13,5,13,1;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs57405871,g1000:0.0625,esp5400:0.104109,ExAC:0.076; 3 196054439 chr3:SNP:1156 T G 3022 . DP=116;DP4=0,0,42,73;AD=0,115;TYPE=SNP;DBXREF=dbSNP:rs6785339,g1000:0.630791,esp5400:0.542015,ExAC:0.618,MutationTaster:0; 3 196054488 chr3:SNP:1157 A G 1908 off_target DP=72;DP4=0,0,24,48;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs6782336,g1000:0.63119,esp5400:0.539241,ExAC:0.617; 3 196199204 chr3:SNP:1158 G T 826 . DP=73;DP4=13,21,14,25;AD=34,39;TYPE=SNP;DBXREF=dbSNP:rs3796129,g1000:0.402356,esp5400:0.51227,ExAC:0.54,MutationTaster:0; 3 196210590 chr3:SNP:1159 A G 223 low_coverage;off_target DP=12;DP4=3,0,9,0;AD=3,9;TYPE=SNP;DBXREF=dbSNP:rs7643192,g1000:0.554912,esp5400:0.672523,ExAC:0.593; 3 196210808 chr3:SNP:1160 T C 341 off_target DP=23;DP4=4,4,4,11;AD=8,15;TYPE=SNP;DBXREF=dbSNP:rs7646174,g1000:0.561302,esp5400:0.680584,ExAC:0.595; 3 196210894 chr3:SNP:1161 T C 149 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs7646273,g1000:0.560903; 3 196215660 chr3:SNP:1162 G A 174 low_coverage;off_target DP=15;DP4=1,6,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs11185543,g1000:0.554313; 3 196749798 chr3:SNP:1163 T G 128 low_coverage;off_target DP=11;DP4=5,0,4,2;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2288766,g1000:0.802117,esp5400:0.831567,ExAC:0.805; 3 196750016 chr3:SNP:1164 A G 440 off_target DP=42;DP4=6,15,9,12;AD=21,21;TYPE=SNP;DBXREF=dbSNP:rs2288765,g1000:0.790735,esp5400:0.828096,ExAC:0.794; 3 196751474 chr3:SNP:1165 C T 292 off_target DP=21;DP4=0,8,0,13;AD=8,13;TYPE=SNP;DBXREF=dbSNP:rs2280296,g1000:0.671126; 3 196754819 chr3:SNP:1166 C G 319 off_target DP=39;DP4=6,17,0,16;AD=23,16;TYPE=SNP;DBXREF=dbSNP:rs2276788,g1000:0.357827,esp5400:0.282269,ExAC:0.326; 3 196754856 chr3:SNP:1167 C A 251 off_target DP=22;DP4=0,10,0,12;AD=10,12;TYPE=SNP;DBXREF=dbSNP:rs12637442,g1000:0.322684; 3 197401952 chr3:SNP:1168 T C 535 . DP=77;DP4=29,18,17,11;AD=47,28;TYPE=SNP;DBXREF=dbSNP:rs28562770,g1000:0.236022,esp5400:0.238914,ExAC:0.131,clinvar:rs28562770|3,MutationTaster:1; 3 197409526 chr3:SNP:1169 T C 137 low_coverage;off_target DP=5;DP4=0,0,0,5;AD=0,5;TYPE=SNP;DBXREF=dbSNP:rs9817144,g1000:0.22524,esp5400:0.245576,ExAC:0.123; 3 197411127 chr3:SNP:1170 C T 195 low_coverage;off_target DP=17;DP4=2,6,3,6;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs12107435,g1000:0.0748802,esp5400:0.112268,ExAC:0.075; 3 197427557 chr3:SNP:1171 A G 235 low_coverage DP=15;DP4=4,0,10,1;AD=4,11;TYPE=SNP;DBXREF=dbSNP:rs28394098,g1000:0.139177,esp5400:0.156692,ExAC:0.101,clinvar:rs28394098|3,MutationTaster:0; 3 197431649 chr3:SNP:1172 C T 270 off_target DP=28;DP4=2,13,3,10;AD=15,13;TYPE=SNP;DBXREF=dbSNP:rs78086828,g1000:0.103435; 3 197432029 chr3:SNP:1173 C A 399 . DP=60;DP4=22,17,11,10;AD=39,21;TYPE=SNP;DBXREF=dbSNP:rs60457064,g1000:0.153355,esp5400:0.167128,ExAC:0.104,clinvar:rs60457064|3,MutationTaster:1; 3 197432036 chr3:SNP:1174 C T 266 . DP=55;DP4=22,17,9,7;AD=39,16;TYPE=SNP;DBXREF=dbSNP:rs61743568,g1000:0.0656949,esp5400:0.096621,ExAC:0.071,clinvar:rs61743568|3,MutationTaster:0.578; 3 197432063 chr3:SNP:1175 T C 234 off_target DP=47;DP4=17,17,7,6;AD=34,13;TYPE=SNP;DBXREF=dbSNP:rs58507505,g1000:0.211062,esp5400:0.243145,ExAC:0.18; 3 197432124 chr3:SNP:1176 T C 109 low_coverage;off_target DP=17;DP4=1,10,0,6;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs78872082,g1000:0.103634; 4 648643 chr4:SNP:1 G A 792 . DP=31;DP4=0,0,19,12;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs10902758,g1000:0.999002,esp5400:0.998885,ExAC:1,clinvar:rs10902758|2,MutationTaster:0.003; 4 663908 chr4:SNP:2 A G 178 off_target DP=23;DP4=3,11,3,6;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs28675771,g1000:0.547923,esp5400:0.579848,ExAC:0.614; 4 843630 chr4:SNP:3 C T 137 low_coverage;off_target DP=19;DP4=1,11,4,3;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs571586422,g1000:0.234225,ExAC:0.31; 4 843695 chr4:SNP:4 A G 3175 . DP=121;DP4=0,0,62,59;AD=0,121;TYPE=SNP;DBXREF=dbSNP:rs8093,g1000:0.800719,esp5400:0.750326,ExAC:0.711,MutationTaster:1; 4 845772 chr4:SNP:5 T C 2652 . DP=104;DP4=0,0,36,68;AD=0,104;TYPE=SNP;DBXREF=dbSNP:rs10031922,g1000:0.974641,esp5400:0.969604,ExAC:0.958; 4 845841 chr4:SNP:6 C T 276 off_target DP=40;DP4=3,23,1,13;AD=26,14;TYPE=SNP;DBXREF=dbSNP:rs17165087,g1000:0.210863; 4 858866 chr4:SNP:7 G A 519 off_target DP=71;DP4=27,16,18,10;AD=43,28;TYPE=SNP;DBXREF=dbSNP:rs1026739,g1000:0.270966,esp5400:0.220394,ExAC:0.273; 4 858874 chr4:INDEL:1 TC TCC 1649 off_target DP=86;DP4=6,4,48,23;AD=10,71;TYPE=INDEL;DBXREF=dbSNP:rs3214922,g1000:0.707468,ExAC:0.681; 4 858941 chr4:SNP:8 T C 1788 . DP=68;DP4=0,0,44,24;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs1026738,g1000:0.975439,esp5400:0.972729,ExAC:0.96,MutationTaster:0; 4 860146 chr4:SNP:9 A G 1604 . DP=61;DP4=0,0,37,24;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs2306248,g1000:0.652955,esp5400:0.622815,ExAC:0.638; 4 860192 chr4:SNP:10 A G 1965 . DP=77;DP4=0,0,46,31;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs1064207,g1000:0.652756,esp5400:0.623466,ExAC:0.638,MutationTaster:1; 4 862502 chr4:SNP:11 T C 354 off_target DP=22;DP4=1,6,2,13;AD=7,15;TYPE=SNP;DBXREF=dbSNP:rs2306244,g1000:0.211861,esp5400:0.144887,ExAC:0.1; 4 871624 chr4:SNP:12 C T 801 off_target DP=70;DP4=11,21,11,27;AD=32,38;TYPE=SNP;DBXREF=dbSNP:rs1564281,g1000:0.352236,esp5400:0.391708,ExAC:0.377; 4 871675 chr4:SNP:13 A G 1115 off_target DP=45;DP4=0,0,12,33;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs1564280,g1000:0.829073; 4 875671 chr4:SNP:14 T C 444 off_target DP=45;DP4=19,5,16,5;AD=24,21;TYPE=SNP;DBXREF=dbSNP:rs45486093,g1000:0.181909,esp5400:0.124295,ExAC:0.143; 4 875887 chr4:SNP:15 G A 398 off_target DP=37;DP4=1,17,3,16;AD=18,19;TYPE=SNP;DBXREF=dbSNP:rs2279186,g1000:0.197484; 4 876318 chr4:SNP:16 C T 163 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs3736087,g1000:0.176717; 4 877709 chr4:SNP:17 T C 471 low_coverage;off_target DP=19;DP4=0,0,17,2;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs3736083,g1000:0.492212; 4 892082 chr4:INDEL:2 TGCA T 461 low_coverage;off_target DP=18;DP4=0,1,0,17;AD=1,17;TYPE=INDEL;DBXREF=dbSNP:rs3830209,g1000:0.458866; 4 906647 chr4:SNP:18 A G 1158 off_target DP=44;DP4=0,0,6,38;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2279178,g1000:0.858027,esp5400:0.867347; 4 980896 chr4:SNP:19 C A 320 . DP=22;DP4=3,4,7,8;AD=7,15;TYPE=SNP;DBXREF=dbSNP:rs11248061,g1000:0.392572,esp5400:0.369453,ExAC:0.405,clinvar:rs11248061|2,MutationTaster:0; 4 980971 chr4:SNP:20 T G 1000 . DP=38;DP4=0,0,22,16;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs10794537,g1000:0.891973,esp5400:0.904451,ExAC:0.853,clinvar:rs10794537|2,MutationTaster:0.999; 4 982852 chr4:SNP:21 G A 635 . DP=84;DP4=19,32,14,19;AD=51,33;TYPE=SNP;DBXREF=dbSNP:rs3796621,g1000:0.438099,esp5400:0.433233,ExAC:0.43; 4 983060 chr4:SNP:22 T C 1735 . DP=139;DP4=29,31,36,43;AD=60,79;TYPE=SNP;DBXREF=dbSNP:rs3796622,g1000:0.685703,esp5400:0.651137,ExAC:0.668,MutationTaster:0; 4 983809 chr4:SNP:23 C T 842 . DP=84;DP4=17,27,18,22;AD=44,40;TYPE=SNP;DBXREF=dbSNP:rs4690221,g1000:0.388978,esp5400:0.385596,ExAC:0.381; 4 994452 chr4:SNP:24 C T 456 . DP=44;DP4=13,9,14,8;AD=22,22;TYPE=SNP;DBXREF=dbSNP:rs3755954,g1000:0.162141,esp5400:0.224475,ExAC:0.197,clinvar:rs3755954|2; 4 1006200 chr4:SNP:25 G A 140 low_coverage;off_target DP=10;DP4=2,2,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs34627176,g1000:0.139577; 4 1006333 chr4:SNP:26 G A 374 . DP=46;DP4=11,14,7,12;AD=25,19;TYPE=SNP;DBXREF=dbSNP:rs4647942,g1000:0.509385,esp5400:0.597273,ExAC:0.399; 4 1016480 chr4:SNP:27 A G 115 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs11723654,g1000:0.486621; 4 1018705 chr4:SNP:28 C A 272 . DP=30;DP4=12,5,10,3;AD=17,13;TYPE=SNP;DBXREF=dbSNP:rs4647930,g1000:0.136981,esp5400:0.203859,ExAC:0.22,MutationTaster:1; 4 1343405 chr4:SNP:29 T C 2135 . DP=83;DP4=0,0,38,44;AD=0,82;TYPE=SNP;DBXREF=dbSNP:rs2276903,g1000:0.632987,esp5400:0.638595,ExAC:0.579; 4 1343720 chr4:SNP:30 G A 161 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs11247994,g1000:0.195887; 4 1345647 chr4:SNP:31 G A 204 low_coverage;off_target DP=14;DP4=2,3,1,8;AD=5,9;TYPE=SNP;DBXREF=dbSNP:rs10000797,g1000:0.126198,esp5400:0.176241,ExAC:0.12; 4 1346682 chr4:SNP:32 G C 120 low_coverage;off_target DP=18;DP4=12,0,6,0;AD=12,6;TYPE=SNP;DBXREF=dbSNP:rs28711287,g1000:0.126797; 4 1348806 chr4:SNP:33 A C 606 off_target DP=23;DP4=0,0,12,11;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs3903127,g1000:0.337061; 4 1369093 chr4:SNP:34 C G 786 off_target DP=29;DP4=0,0,26,3;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs11941200,g1000:0.780152; 4 1369094 chr4:SNP:35 T G 684 off_target DP=26;DP4=0,0,23,3;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs11946956,g1000:0.780152; 4 1369885 chr4:SNP:36 G A 853 . DP=100;DP4=27,30,12,30;AD=57,42;TYPE=SNP;DBXREF=dbSNP:rs11724369,g1000:0.182308,esp5400:0.27603,ExAC:0.294; 4 1373751 chr4:SNP:37 G T 216 off_target DP=21;DP4=11,0,10,0;AD=11,10;TYPE=SNP;DBXREF=dbSNP:rs35735964,g1000:0.184704; 4 1374045 chr4:SNP:38 T G 130 low_coverage;off_target DP=17;DP4=6,3,0,8;AD=9,8;TYPE=SNP; 4 1374695 chr4:SNP:39 C A 3123 . DP=119;DP4=0,0,62,57;AD=0,119;TYPE=SNP;DBXREF=dbSNP:rs28614045,g1000:0.70028,esp5400:0.688825,ExAC:0.693; 4 1374774 chr4:SNP:40 C T 2829 . DP=111;DP4=0,0,34,77;AD=0,111;TYPE=SNP;DBXREF=dbSNP:rs28522910,g1000:0.696486,esp5400:0.689338,ExAC:0.69,MutationTaster:0.999; 4 1374789 chr4:SNP:41 A G 2950 off_target DP=111;DP4=0,0,35,75;AD=0,110;TYPE=SNP;DBXREF=dbSNP:rs28733902,g1000:0.763578,esp5400:0.752981,ExAC:0.709; 4 1377615 chr4:SNP:42 A G 1000 . DP=38;DP4=0,0,21,17;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs9996817,g1000:0.717252,esp5400:0.718721,ExAC:0.719; 4 1698183 chr4:SNP:43 C T 101 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs798719,g1000:0.738219; 4 1806834 chr4:SNP:44 G C 474 low_coverage;off_target DP=18;DP4=0,0,5,13;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4865476,g1000:0.961861; 4 1807894 chr4:SNP:45 G A 958 . DP=38;DP4=0,0,14,23;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs7688609,g1000:0.95607,esp5400:0.954046,ExAC:0.987; 4 1818594 chr4:SNP:46 C T 2026 . DP=82;DP4=1,1,30,49;AD=2,79;TYPE=SNP;DBXREF=dbSNP:rs9328763,g1000:0.960663,esp5400:0.959937,ExAC:0.989; 4 1940139 chr4:SNP:47 C T 163 low_coverage;off_target DP=9;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs139111116,esp5400:0.006045; 4 1940143 chr4:SNP:48 C T 263 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs143787373,ExAC:0.0009623; 4 1954945 chr4:SNP:49 A G 786 off_target DP=29;DP4=0,0,29,0;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs489550,g1000:0.996406,ExAC:0.998,MutationTaster:0; 4 1986542 chr4:SNP:50 C T 479 . DP=48;DP4=14,10,18,6;AD=24,24;TYPE=SNP;DBXREF=dbSNP:rs2234570,g1000:0.258786,esp5400:0.125117,ExAC:0.162,MutationTaster:1; 4 2065373 chr4:SNP:51 T G 263 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs454226,g1000:0.716054; 4 2814148 chr4:SNP:52 A G 633 . DP=48;DP4=9,10,14,15;AD=19,29;TYPE=SNP;DBXREF=dbSNP:rs1709004,g1000:0.105831,esp5400:0.066061,ExAC:0.04; 4 2822289 chr4:SNP:53 C A 365 off_target DP=55;DP4=23,11,12,8;AD=34,20;TYPE=SNP;DBXREF=dbSNP:rs2239727,g1000:0.539137; 4 2822467 chr4:SNP:54 G T 169 . DP=33;DP4=6,17,2,8;AD=23,10;TYPE=SNP;DBXREF=dbSNP:rs231402,g1000:0.372005,esp5400:0.352055,ExAC:0.441,clinvar:rs231402|2; 4 2826376 chr4:SNP:55 C T 964 . DP=65;DP4=12,11,21,21;AD=23,42;TYPE=SNP;DBXREF=dbSNP:rs140326137,g1000:0.00638978,esp5400:0.018219,ExAC:0.014; 4 2826400 chr4:SNP:56 T C 1919 . DP=73;DP4=0,0,37,36;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs3213501,g1000:0.78754,esp5400:0.801543,ExAC:0.753,clinvar:rs3213501|2; 4 2826912 chr4:SNP:57 C G 514 . DP=40;DP4=7,10,9,14;AD=17,23;TYPE=SNP;DBXREF=dbSNP:rs16843413,g1000:0.146765,esp5400:0.118812,ExAC:0.067,clinvar:rs16843413|2; 4 2829077 chr4:SNP:58 T C 1006 off_target DP=41;DP4=1,0,12,28;AD=1,40;TYPE=SNP;DBXREF=dbSNP:rs2269485,g1000:0.776757,esp5400:0.785555,ExAC:0.747; 4 2829409 chr4:SNP:59 G A 311 . DP=36;DP4=9,10,4,12;AD=19,16;TYPE=SNP;DBXREF=dbSNP:rs28516876,g1000:0.15016,esp5400:0.138182,ExAC:0.081,clinvar:rs28516876|2; 4 2829478 chr4:SNP:60 G C 307 low_coverage;off_target DP=12;DP4=0,0,1,11;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs13137906,g1000:0.776957; 4 2831347 chr4:SNP:61 G C 137 . DP=26;DP4=3,15,8,0;AD=18,8;TYPE=SNP; 4 2831383 chr4:SNP:62 T G 282 . DP=32;DP4=6,12,5,9;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs231399,g1000:0.466254,esp5400:0.457148,ExAC:0.502,clinvar:rs231399|2; 4 2833128 chr4:SNP:63 G A 390 low_coverage;off_target DP=14;DP4=0,0,13,1;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2269484,g1000:0.760383; 4 2833523 chr4:SNP:64 C T 197 low_coverage;off_target DP=18;DP4=3,6,7,2;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs146885241,g1000:0.00638978; 4 2928413 chr4:SNP:65 T C 1184 off_target DP=45;DP4=0,0,22,23;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs4964,g1000:0.766973,esp5400:0.818981,ExAC:0.79; 4 2965676 chr4:SNP:66 C T 152 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs16843684,g1000:0.289936,ExAC:0.193; 4 2965695 chr4:SNP:67 G A 162 low_coverage;off_target DP=19;DP4=10,1,8,0;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs10021191,g1000:0.298722,ExAC:0.185; 4 2965914 chr4:SNP:68 C A 395 off_target DP=30;DP4=0,12,0,18;AD=12,18;TYPE=SNP;DBXREF=dbSNP:rs10030130,g1000:0.301518,esp5400:0.331325; 4 2990291 chr4:SNP:69 A C 103 low_coverage;off_target DP=8;DP4=3,0,5,0;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs2051557,g1000:0.295128; 4 2990338 chr4:SNP:70 G T 154 low_coverage;off_target DP=11;DP4=4,0,7,0;AD=4,7;TYPE=SNP;DBXREF=dbSNP:rs2051556,g1000:0.313498; 4 2990375 chr4:SNP:71 G A 217 low_coverage;off_target DP=18;DP4=8,0,10,0;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs2051555,g1000:0.314097; 4 2990499 chr4:SNP:72 G T 814 . DP=103;DP4=29,31,23,19;AD=60,42;TYPE=SNP;DBXREF=dbSNP:rs2960306,g1000:0.3125,esp5400:0.401004,ExAC:0.326,MutationTaster:1; 4 2993980 chr4:SNP:73 T C 723 . DP=61;DP4=17,10,20,14;AD=27,34;TYPE=SNP;DBXREF=dbSNP:rs2515941,g1000:0.292532,esp5400:0.38074,ExAC:0.321; 4 2994107 chr4:SNP:74 T G 279 off_target DP=24;DP4=1,10,1,12;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs2471338,g1000:0.257388; 4 3006043 chr4:SNP:75 C T 746 . DP=91;DP4=25,29,16,21;AD=54,37;TYPE=SNP;DBXREF=dbSNP:rs1024323,g1000:0.373203,esp5400:0.44934,ExAC:0.365,MutationTaster:0; 4 3024044 chr4:SNP:76 C T 298 off_target DP=36;DP4=16,4,14,2;AD=20,16;TYPE=SNP;DBXREF=dbSNP:rs2471325,g1000:0.222045; 4 3029588 chr4:SNP:77 G A 344 off_target DP=33;DP4=10,6,10,7;AD=16,17;TYPE=SNP;DBXREF=dbSNP:rs2857844,g1000:0.518171,esp5400:0.477691,ExAC:0.59; 4 3039150 chr4:SNP:78 T C 759 . DP=75;DP4=28,10,25,12;AD=38,37;TYPE=SNP;DBXREF=dbSNP:rs1801058,g1000:0.693291,esp5400:0.681446,ExAC:0.626,MutationTaster:0; 4 3039311 chr4:SNP:79 C T 238 off_target DP=20;DP4=1,8,1,10;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs2071689,g1000:0.677915; 4 3076603 chr4:INDEL:3 C CCAGCAGCAGCAGCAG 927 . DP=94;DP4=7,1,19,24;AD=8,43;TYPE=INDEL; 4 3076603 chr4:INDEL:4 CCAGCAG C 402 . DP=94;DP4=7,1,14,8;AD=8,22;TYPE=INDEL;DBXREF=dbSNP:rs374076986,g1000:0.377796,ExAC:0.032; 4 3148653 chr4:SNP:80 T G 1310 . DP=137;DP4=37,35,33,32;AD=72,65;TYPE=SNP;DBXREF=dbSNP:rs1143646,g1000:0.0223642,esp5400:0.035278,ExAC:0.04,MutationTaster:0.014; 4 3219613 chr4:SNP:81 A C 818 . DP=32;DP4=0,0,13,19;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs2857790,g1000:0.984824,esp5400:0.985939,ExAC:0.995; 4 3230410 chr4:INDEL:5 AGAG A 810 . DP=87;DP4=29,16,26,12;AD=45,38;TYPE=INDEL;DBXREF=dbSNP:rs149109767,g1000:0.0265575,ExAC:0.059; 4 3230804 chr4:SNP:82 A C 251 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2530598,g1000:0.514577; 4 3240526 chr4:SNP:83 A G 948 off_target DP=35;DP4=0,0,17,18;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2858081,g1000:0.989018,esp5400:0.986839,ExAC:0.996; 4 3241845 chr4:SNP:84 C T 303 off_target DP=34;DP4=1,18,5,10;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs362307,g1000:0.0275559; 4 3475107 chr4:SNP:85 G A 430 off_target DP=32;DP4=0,1,12,7;AD=1,19;TYPE=SNP;DBXREF=dbSNP:rs2344208,g1000:0.138778,esp5400:0.223977,ExAC:0.128,clinvar:rs2344208|2; 4 3475107 chr4:SNP:86 G C 242 off_target DP=32;DP4=0,1,9,3;AD=1,12;TYPE=SNP;DBXREF=dbSNP:rs2344208,g1000:0.270367,ExAC:0.194,clinvar:rs2344208|2; 4 3475122 chr4:SNP:87 G A 719 . DP=48;DP4=9,7,18,14;AD=16,32;TYPE=SNP;DBXREF=dbSNP:rs2344209,g1000:0.0970447,esp5400:0.140613,ExAC:0.115,clinvar:rs2344209|2; 4 3475252 chr4:SNP:88 T C 2547 . DP=97;DP4=0,0,45,52;AD=0,97;TYPE=SNP;DBXREF=dbSNP:rs4325970,g1000:1,ExAC:1,clinvar:rs4325970|2; 4 3478051 chr4:SNP:89 T C 395 low_coverage;off_target DP=15;DP4=0,0,11,4;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2699425,g1000:0.417532,esp5400:0.411128,ExAC:0.189,clinvar:rs2699425|2; 4 3478323 chr4:SNP:90 T C 395 low_coverage;off_target DP=15;DP4=0,0,1,14;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2699426,g1000:0.556709; 4 3487237 chr4:SNP:91 A G 136 low_coverage;off_target DP=11;DP4=5,0,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2006791,g1000:0.781749,esp5400:0.712665,ExAC:0.756,clinvar:rs2006791|2; 4 3494430 chr4:SNP:92 G A 467 off_target DP=36;DP4=11,3,14,8;AD=14,22;TYPE=SNP;DBXREF=dbSNP:rs6830812,g1000:0.200479; 4 3495095 chr4:SNP:93 G A 384 . DP=46;DP4=8,17,5,15;AD=25,20;TYPE=SNP;DBXREF=dbSNP:rs9684786,g1000:0.195487,esp5400:0.159977,ExAC:0.189,clinvar:rs9684786|2,MutationTaster:0.007; 4 3495283 chr4:SNP:94 C G 233 low_coverage;off_target DP=19;DP4=0,8,3,8;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs11733064,g1000:0.354233; 4 3514695 chr4:SNP:95 A G 949 . DP=76;DP4=17,16,19,24;AD=33,43;TYPE=SNP;DBXREF=dbSNP:rs6789,g1000:0.386382,esp5400:0.296727,ExAC:0.352; 4 3516689 chr4:SNP:96 T C 1165 off_target DP=84;DP4=11,20,15,38;AD=31,53;TYPE=SNP;DBXREF=dbSNP:rs2515967,g1000:0.992612,esp5400:0.983919,ExAC:0.985; 4 3516742 chr4:SNP:97 A G 537 off_target DP=46;DP4=4,15,1,25;AD=19,26;TYPE=SNP;DBXREF=dbSNP:rs1794442,g1000:0.757388; 4 3520097 chr4:INDEL:6 C CCAGGCGAGA 102 low_coverage;off_target DP=17;DP4=1,11,0,5;AD=12,5;TYPE=INDEL;DBXREF=dbSNP:rs142854314,g1000:0.468051; 4 3521754 chr4:INDEL:7 GT GTT 167 low_coverage;off_target DP=17;DP4=5,2,7,3;AD=7,10;TYPE=INDEL;DBXREF=dbSNP:rs1799746,g1000:0.182109,ExAC:0.193; 4 3521939 chr4:SNP:98 T A 440 off_target DP=37;DP4=8,9,9,11;AD=17,20;TYPE=SNP;DBXREF=dbSNP:rs1741547,g1000:0.409345,esp5400:0.317438,ExAC:0.376; 4 3533900 chr4:INDEL:8 CCAGGCCCCGCTCCACCGACCG C 258 off_target DP=29;DP4=13,4,5,7;AD=17,12;TYPE=INDEL;DBXREF=dbSNP:rs1799745,g1000:0.10024; 4 3769789 chr4:INDEL:9 G GGGGGAGCTTTCCCAGAGACCC 889 off_target DP=49;DP4=2,11,5,31;AD=13,36;TYPE=INDEL;DBXREF=dbSNP:rs11269124,g1000:0.373802; 4 5570221 chr4:SNP:99 G A 489 . DP=42;DP4=15,4,15,8;AD=19,23;TYPE=SNP;DBXREF=dbSNP:rs12511039,g1000:0.440895,esp5400:0.258419,ExAC:0.362,clinvar:rs12511039|2; 4 5577884 chr4:SNP:100 T C 279 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6840591,g1000:0.958666; 4 5617295 chr4:SNP:101 T C 375 off_target DP=41;DP4=9,14,6,12;AD=23,18;TYPE=SNP;DBXREF=dbSNP:rs10025164,g1000:0.426118,esp5400:0.354713,ExAC:0.343,clinvar:rs10025164|2; 4 5617369 chr4:SNP:102 G T 108 low_coverage;off_target DP=13;DP4=0,8,0,5;AD=8,5;TYPE=SNP;DBXREF=dbSNP:rs10032860,g1000:0.42512; 4 5624670 chr4:SNP:103 T C 595 . DP=37;DP4=1,10,6,20;AD=11,26;TYPE=SNP;DBXREF=dbSNP:rs730469,g1000:0.517572,esp5400:0.444228,ExAC:0.369,clinvar:rs730469|2,MutationTaster:0; 4 5664988 chr4:SNP:104 C A 238 off_target DP=20;DP4=4,5,3,8;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs371325268,ExAC:0.0003212; 4 5686967 chr4:SNP:105 C T 267 off_target DP=32;DP4=18,1,13,0;AD=19,13;TYPE=SNP;DBXREF=dbSNP:rs957726,g1000:0.656949; 4 5687263 chr4:SNP:106 A G 187 off_target DP=22;DP4=0,13,0,9;AD=13,9;TYPE=SNP;DBXREF=dbSNP:rs998092,g1000:0.65655; 4 5696264 chr4:SNP:107 G A 145 low_coverage;off_target DP=18;DP4=0,10,0,7;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs16837573,g1000:0.0690895,esp5400:0.036438,ExAC:0.066; 4 5710255 chr4:SNP:108 C T 122 low_coverage;off_target DP=17;DP4=5,6,4,2;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs76269601,g1000:0.0982428,esp5400:0.045786,ExAC:0.1,clinvar:rs76269601|2; 4 5721021 chr4:SNP:109 A C 573 . DP=69;DP4=17,21,12,19;AD=38,31;TYPE=SNP;DBXREF=dbSNP:rs2291157,g1000:0.104233,esp5400:0.078267,ExAC:0.108,clinvar:rs2291157|2,MutationTaster:0; 4 5743509 chr4:SNP:110 C T 1105 . DP=42;DP4=0,0,15,27;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs6446393,g1000:0.966653,esp5400:0.955053,ExAC:0.945,clinvar:rs6446393|2; 4 5743512 chr4:SNP:111 T C 1315 . DP=50;DP4=0,0,16,34;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs6414624,g1000:0.744808,esp5400:0.705937,ExAC:0.794,clinvar:rs6414624|2,MutationTaster:0; 4 5746916 chr4:SNP:112 C T 1379 off_target DP=54;DP4=0,0,31,23;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs4689313,g1000:0.590056,esp5400:0.658981,ExAC:0.58,clinvar:rs4689313|2; 4 5747078 chr4:SNP:113 A G 595 . DP=24;DP4=0,0,11,13;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2286342,g1000:0.593051,esp5400:0.699665,ExAC:0.629,clinvar:rs2286342|2; 4 5747106 chr4:INDEL:10 GTT GT 273 off_target DP=25;DP4=1,1,8,15;AD=2,23;TYPE=INDEL;DBXREF=dbSNP:rs3214258,g1000:0.215655,ExAC:0.176; 4 5747131 chr4:SNP:114 C A 515 low_coverage;off_target DP=19;DP4=0,0,4,15;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs13145958,g1000:0.491613; 4 5747182 chr4:SNP:115 G A 298 low_coverage;off_target DP=11;DP4=0,0,2,9;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs28609792,g1000:0.222244; 4 5749784 chr4:SNP:116 G A 1289 off_target DP=49;DP4=0,0,43,6;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs4689312,g1000:0.469449; 4 5749804 chr4:SNP:117 G A 1583 off_target DP=62;DP4=0,0,45,17;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs4689311,g1000:0.470248; 4 5749904 chr4:SNP:118 T C 10000 . DP=135;DP4=1,2,57,75;AD=3,132;TYPE=SNP;DBXREF=dbSNP:rs4688963,g1000:0.471446,esp5400:0.403142,ExAC:0.418,clinvar:rs4688963|2; 4 5749961 chr4:SNP:119 G C 2537 . DP=100;DP4=0,2,31,67;AD=2,98;TYPE=SNP;DBXREF=dbSNP:rs4688962,g1000:0.582867,esp5400:0.530861,ExAC:0.492,clinvar:rs4688962|2; 4 5750084 chr4:SNP:120 A T 711 off_target DP=27;DP4=0,0,4,23;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs4688961,g1000:0.583067,esp5400:0.529095,ExAC:0.489; 4 5755373 chr4:SNP:121 G C 813 off_target DP=30;DP4=0,0,30,0;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs7660793,g1000:0.470048; 4 5755542 chr4:SNP:122 C A 10000 . DP=166;DP4=1,1,89,75;AD=2,164;TYPE=SNP;DBXREF=dbSNP:rs2302075,g1000:0.844649,esp5400:0.852203,ExAC:0.796,clinvar:rs2302075|2,MutationTaster:0; 4 5755837 chr4:SNP:123 T A 658 off_target DP=25;DP4=0,0,0,25;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs2302074,g1000:0.14397; 4 5795412 chr4:SNP:124 C T 1402 . DP=58;DP4=1,2,34,21;AD=3,55;TYPE=SNP;DBXREF=dbSNP:rs11737221,g1000:0.333866,esp5400:0.225391,ExAC:0.188,clinvar:rs11737221|2; 4 5799077 chr4:SNP:125 G A 515 low_coverage;off_target DP=19;DP4=0,0,1,18;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs12509231,g1000:0.338259; 4 5803633 chr4:SNP:126 C T 341 low_coverage;off_target DP=14;DP4=1,0,13,0;AD=1,13;TYPE=SNP;DBXREF=dbSNP:rs2306400,g1000:0.339856,esp5400:0.252138,ExAC:0.347,clinvar:rs2306400|2; 4 5803669 chr4:SNP:127 T C 763 . DP=29;DP4=0,0,23,6;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs1031919,g1000:0.690495,esp5400:0.721737,ExAC:0.723,clinvar:rs1031919|2; 4 5803829 chr4:INDEL:11 ACCCCCCC ACCCCCC 235 . DP=86;DP4=13,19,21,28;AD=32,49;TYPE=INDEL;DBXREF=dbSNP:rs3214940,g1000:0.358626,ExAC:0.362,clinvar:rs398092136|3; 4 5803903 chr4:SNP:128 A G 263 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2306399,g1000:0.361621; 4 5803904 chr4:SNP:129 C T 237 low_coverage;off_target DP=9;DP4=0,0,1,8;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1031918,g1000:0.664337; 4 5806366 chr4:SNP:130 T C 136 low_coverage;off_target DP=15;DP4=5,3,7,0;AD=8,7;TYPE=SNP;DBXREF=dbSNP:rs1552057,g1000:0.308107; 4 5812195 chr4:SNP:131 A G 816 off_target DP=31;DP4=0,0,7,24;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2279250,g1000:0.690695,esp5400:0.714565,ExAC:0.706,clinvar:rs2279250|2; 4 5812566 chr4:SNP:132 A G 264 off_target DP=23;DP4=9,2,12,0;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs2279247,g1000:0.180312; 4 5812778 chr4:SNP:133 G A 1516 off_target DP=56;DP4=0,0,14,42;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs2291151,g1000:0.533746,esp5400:0.611452,ExAC:0.575,clinvar:rs2291151|2; 4 6279047 chr4:SNP:134 C T 442 off_target DP=40;DP4=16,3,21,0;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs10937714,g1000:0.850639; 4 6279504 chr4:SNP:135 G A 354 off_target DP=44;DP4=2,24,0,18;AD=26,18;TYPE=SNP;DBXREF=dbSNP:rs28420833,g1000:0.679113; 4 6290594 chr4:SNP:136 T C 101 low_coverage;off_target DP=15;DP4=10,0,5,0;AD=10,5;TYPE=SNP;DBXREF=dbSNP:rs4688989,g1000:0.748203; 4 6291003 chr4:SNP:137 C G 198 off_target DP=22;DP4=0,12,0,10;AD=12,10;TYPE=SNP;DBXREF=dbSNP:rs4689394,g1000:0.733826; 4 6292909 chr4:SNP:138 C T 170 low_coverage;off_target DP=14;DP4=5,1,8,0;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs9998519,g1000:0.715056,esp5400:0.617587,ExAC:0.651,clinvar:rs9998519|2; 4 6292915 chr4:SNP:139 A G 176 low_coverage DP=14;DP4=5,1,8,0;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs10010131,g1000:0.728834,esp5400:0.627068,ExAC:0.655,clinvar:rs10010131|255|255; 4 6293446 chr4:SNP:140 T C 211 low_coverage;off_target DP=14;DP4=5,0,9,0;AD=5,9;TYPE=SNP;DBXREF=dbSNP:rs13101355,g1000:0.729034; 4 6293474 chr4:SNP:141 A G 245 low_coverage;off_target DP=18;DP4=7,0,11,0;AD=7,11;TYPE=SNP;DBXREF=dbSNP:rs13147655,g1000:0.728834; 4 6293696 chr4:SNP:142 C G 2104 . DP=204;DP4=49,52,45,58;AD=101,103;TYPE=SNP;DBXREF=dbSNP:rs1801213,g1000:0.75639,esp5400:0.677434,ExAC:0.703,clinvar:rs1801213|255,MutationTaster:1; 4 6293838 chr4:SNP:143 A G 280 off_target DP=26;DP4=0,11,2,13;AD=11,15;TYPE=SNP;DBXREF=dbSNP:rs11729672,g1000:0.728235; 4 6293919 chr4:SNP:144 C G 107 low_coverage;off_target DP=12;DP4=0,7,0,5;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs11725500,g1000:0.728435; 4 6302519 chr4:SNP:145 G A 2849 . DP=253;DP4=75,41,86,51;AD=116,137;TYPE=SNP;DBXREF=dbSNP:rs1801212,g1000:0.884385,esp5400:0.800056,ExAC:0.782,clinvar:rs1801212|2,MutationTaster:0; 4 6302707 chr4:SNP:146 C T 948 . DP=126;DP4=37,40,27,21;AD=77,48;TYPE=SNP;DBXREF=dbSNP:rs1801206,g1000:0.641573,esp5400:0.552054,ExAC:0.624,clinvar:rs1801206|255; 4 6302889 chr4:SNP:147 G A 811 . DP=94;DP4=25,27,25,16;AD=52,41;TYPE=SNP;DBXREF=dbSNP:rs1801208,g1000:0.0603035,esp5400:0.045455,ExAC:0.057,clinvar:rs1801208|2,MutationTaster:1; 4 6303022 chr4:SNP:148 C T 2236 . DP=196;DP4=49,40,62,45;AD=89,107;TYPE=SNP;DBXREF=dbSNP:rs1801214,g1000:0.729433,esp5400:0.633668,ExAC:0.659,clinvar:rs1801214|255; 4 6303955 chr4:SNP:149 G A 488 . DP=45;DP4=3,18,8,16;AD=21,24;TYPE=SNP;DBXREF=dbSNP:rs1046314,g1000:0.653155,esp5400:0.564534,ExAC:0.626,clinvar:rs1046314|255; 4 6304087 chr4:SNP:150 A G 646 . DP=52;DP4=16,6,17,13;AD=22,30;TYPE=SNP;DBXREF=dbSNP:rs1046316,g1000:0.779952,esp5400:0.712028,ExAC:0.721,clinvar:rs1046316|255; 4 6304242 chr4:SNP:151 T C 254 off_target DP=39;DP4=8,18,3,10;AD=26,13;TYPE=SNP;DBXREF=dbSNP:rs1046317,g1000:0.783746,esp5400:0.718732,ExAC:0.72; 4 6304286 chr4:SNP:152 C T 137 low_coverage;off_target DP=19;DP4=0,12,0,7;AD=12,7;TYPE=SNP;DBXREF=dbSNP:rs1046319,g1000:0.848043; 4 6374189 chr4:SNP:153 A G 424 off_target DP=33;DP4=10,2,17,3;AD=12,20;TYPE=SNP;DBXREF=dbSNP:rs6837903,g1000:0.936302; 4 6374468 chr4:SNP:154 T C 693 off_target DP=81;DP4=14,33,7,27;AD=47,34;TYPE=SNP;DBXREF=dbSNP:rs12511721,g1000:0.347444,esp5400:0.307399,ExAC:0.32; 4 6377534 chr4:SNP:155 A G 419 off_target DP=31;DP4=9,3,11,8;AD=12,19;TYPE=SNP;DBXREF=dbSNP:rs4688998,g1000:0.906749,esp5400:0.889106,ExAC:0.949; 4 6377713 chr4:SNP:156 G C 529 off_target DP=55;DP4=7,22,8,18;AD=29,26;TYPE=SNP;DBXREF=dbSNP:rs4234738,g1000:0.923722; 4 6382919 chr4:SNP:157 C T 212 off_target DP=26;DP4=2,14,0,10;AD=16,10;TYPE=SNP;DBXREF=dbSNP:rs62285930,g1000:0.208666,ExAC:0.091; 4 6536979 chr4:SNP:158 G A 1208 off_target DP=115;DP4=32,25,31,26;AD=57,57;TYPE=SNP;DBXREF=dbSNP:rs13141184,g1000:0.515176,ExAC:0.57; 4 8594574 chr4:SNP:159 T C 1053 . DP=40;DP4=0,0,21,19;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2302583,g1000:0.80611,esp5400:0.756894,ExAC:0.607,MutationTaster:0; 4 8594577 chr4:SNP:160 C T 428 . DP=36;DP4=9,7,12,8;AD=16,20;TYPE=SNP;DBXREF=dbSNP:rs34964084,g1000:0.130791,esp5400:0.094335,ExAC:0.111,MutationTaster:0.497; 4 8594683 chr4:SNP:161 C T 154 off_target DP=20;DP4=3,9,0,8;AD=12,8;TYPE=SNP;DBXREF=dbSNP:rs2302582,g1000:0.0994409,esp5400:0.034549,ExAC:0.026; 4 8602793 chr4:SNP:162 T C 1446 off_target DP=55;DP4=0,0,48,7;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs4299567,g1000:0.983227; 4 8602798 chr4:SNP:163 G C 609 off_target DP=53;DP4=22,3,24,4;AD=25,28;TYPE=SNP;DBXREF=dbSNP:rs2241069,g1000:0.627796,esp5400:0.562146; 4 8602816 chr4:SNP:164 A G 1945 off_target DP=74;DP4=0,0,61,13;AD=0,74;TYPE=SNP;DBXREF=dbSNP:rs4594711,g1000:0.982827,esp5400:0.982322,ExAC:0.995; 4 8602884 chr4:SNP:165 T C 10000 . DP=139;DP4=0,0,84,55;AD=0,139;TYPE=SNP;DBXREF=dbSNP:rs4301095,g1000:0.983427,esp5400:0.983919,ExAC:0.995; 4 8602935 chr4:SNP:166 A G 10000 . DP=164;DP4=1,0,75,88;AD=1,163;TYPE=SNP;DBXREF=dbSNP:rs4431213,g1000:0.983427,esp5400:0.984012,ExAC:0.995; 4 8603117 chr4:SNP:167 A T 1122 . DP=121;DP4=27,38,37,19;AD=65,56;TYPE=SNP;DBXREF=dbSNP:rs35993494,g1000:0.101038,esp5400:0.143935,ExAC:0.149,MutationTaster:1; 4 8607587 chr4:SNP:168 G A 139 low_coverage;off_target DP=18;DP4=11,0,7,0;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs4696703,g1000:0.907947; 4 8608066 chr4:SNP:169 G A 101 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs2302581,g1000:0.596446; 4 8608634 chr4:SNP:170 C T 255 . DP=38;DP4=2,23,1,12;AD=25,13;TYPE=SNP;DBXREF=dbSNP:rs2302580,g1000:0.372404,esp5400:0.336603,ExAC:0.399; 4 8608934 chr4:SNP:171 C T 207 low_coverage;off_target DP=9;DP4=0,1,8,0;AD=1,8;TYPE=SNP;DBXREF=dbSNP:rs2302579,g1000:0.596246; 4 8608979 chr4:SNP:172 G A 258 low_coverage;off_target DP=15;DP4=3,1,8,3;AD=4,11;TYPE=SNP;DBXREF=dbSNP:rs2302578,g1000:0.466853,esp5400:0.424986,ExAC:0.507; 4 8613917 chr4:SNP:173 C G 202 low_coverage;off_target DP=13;DP4=1,3,4,5;AD=4,9;TYPE=SNP;DBXREF=dbSNP:rs12511563,g1000:0.879792,esp5400:0.440059; 4 8616054 chr4:SNP:174 C T 484 off_target DP=36;DP4=10,4,13,9;AD=14,22;TYPE=SNP;DBXREF=dbSNP:rs2302572,g1000:0.451478,esp5400:0.399331,ExAC:0.47; 4 8616070 chr4:SNP:175 T C 737 off_target DP=51;DP4=10,7,18,16;AD=17,34;TYPE=SNP;DBXREF=dbSNP:rs2302571,g1000:0.452676,esp5400:0.400167,ExAC:0.472; 4 8616096 chr4:SNP:176 T C 1156 . DP=69;DP4=13,7,25,24;AD=20,49;TYPE=SNP;DBXREF=dbSNP:rs1131140,g1000:0.616813,esp5400:0.498885,ExAC:0.575; 4 8616179 chr4:SNP:177 T C 2626 . DP=100;DP4=0,0,45,55;AD=0,100;TYPE=SNP;DBXREF=dbSNP:rs7378066,g1000:0.995407,esp5400:0.994423,ExAC:0.998,MutationTaster:0; 4 8620045 chr4:SNP:178 A G 613 off_target DP=24;DP4=0,0,24,0;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs4444816,g1000:0.90655; 4 8620325 chr4:SNP:179 A G 409 off_target DP=30;DP4=0,12,0,18;AD=12,18;TYPE=SNP;DBXREF=dbSNP:rs4696872,g1000:0.917332; 4 8621194 chr4:SNP:180 A G 2704 . DP=103;DP4=0,0,39,64;AD=0,103;TYPE=SNP;DBXREF=dbSNP:rs28514374,g1000:0.995407,esp5400:0.996561,ExAC:0.999; 4 8621386 chr4:SNP:181 A G 265 off_target DP=25;DP4=2,10,4,9;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs1050464,g1000:0.419728,esp5400:0.36287,ExAC:0.414; 4 8621480 chr4:SNP:182 G C 380 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6816032,g1000:0.995607; 4 8621489 chr4:SNP:183 T C 136 low_coverage;off_target DP=17;DP4=0,10,0,7;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs9759528,g1000:0.0828674; 4 9784631 chr4:SNP:184 C T 2316 . DP=89;DP4=1,0,44,43;AD=1,87;TYPE=SNP;DBXREF=dbSNP:rs6283,g1000:0.609026,esp5400:0.647332,ExAC:0.631; 4 9785134 chr4:SNP:185 T C 869 off_target DP=34;DP4=0,0,5,29;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1967551,g1000:0.425519,esp5400:0.568762,ExAC:0.551; 4 9888994 chr4:SNP:186 C T 471 low_coverage;off_target DP=19;DP4=0,0,12,7;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs4697904,g1000:0.896765; 4 9889042 chr4:SNP:187 T C 684 off_target DP=26;DP4=0,0,13,13;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs4697905,g1000:0.893171; 4 9889069 chr4:SNP:188 C T 775 off_target DP=31;DP4=1,0,14,16;AD=1,30;TYPE=SNP;DBXREF=dbSNP:rs6836878,g1000:0.316494; 4 9909923 chr4:SNP:189 G A 2194 . DP=86;DP4=0,0,54,32;AD=0,86;TYPE=SNP;DBXREF=dbSNP:rs2280205,g1000:0.271166,esp5400:0.378044,ExAC:0.438,MutationTaster:0; 4 9982044 chr4:SNP:190 A C 316 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs13125209,g1000:0.739018; 4 9982191 chr4:SNP:191 C T 1283 off_target DP=49;DP4=1,0,37,11;AD=1,48;TYPE=SNP;DBXREF=dbSNP:rs13115193,g1000:0.386182,esp5400:0.424428,ExAC:0.474; 4 9982330 chr4:SNP:192 A G 2495 . DP=95;DP4=0,0,35,60;AD=0,95;TYPE=SNP;DBXREF=dbSNP:rs13125646,g1000:0.752396,esp5400:0.728853,ExAC:0.771; 4 9998440 chr4:SNP:193 C T 256 low_coverage DP=10;DP4=0,0,6,4;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs10939650,g1000:0.642173,esp5400:0.7256,ExAC:0.705; 4 9998493 chr4:SNP:194 A G 1000 . DP=38;DP4=0,0,23,15;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs13113918,g1000:0.820687,esp5400:0.781279,ExAC:0.801; 4 9998605 chr4:SNP:195 T C 793 off_target DP=32;DP4=0,0,13,19;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs28592748,g1000:0.820687,esp5400:0.781,ExAC:0.801; 4 10020480 chr4:SNP:196 C T 307 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2240720,g1000:0.410743; 4 10020564 chr4:SNP:197 G A 920 off_target DP=36;DP4=0,0,19,17;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs2240721,g1000:0.408546,esp5400:0.403768,ExAC:0.344; 4 10020757 chr4:SNP:198 A G 562 off_target DP=22;DP4=0,0,4,18;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs2240722,g1000:0.407947; 4 10022981 chr4:SNP:199 C T 1107 . DP=45;DP4=0,0,24,20;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2276961,g1000:0.407348,esp5400:0.429355,ExAC:0.51,MutationTaster:0; 4 10502937 chr4:SNP:200 T G 3149 . DP=120;DP4=0,0,80,40;AD=0,120;TYPE=SNP;DBXREF=dbSNP:rs2903960,g1000:0.990016,esp5400:0.991876,ExAC:0.998; 4 10509699 chr4:SNP:201 T C 247 off_target DP=32;DP4=8,11,5,8;AD=19,13;TYPE=SNP;DBXREF=dbSNP:rs2868941,g1000:0.78155,esp5400:0.765359,ExAC:0.71; 4 10515142 chr4:SNP:202 C T 948 . DP=100;DP4=26,27,28,19;AD=53,47;TYPE=SNP;DBXREF=dbSNP:rs114623663,g1000:0.0071885,esp5400:0.015035,ExAC:0.015; 4 10527342 chr4:SNP:203 C T 144 low_coverage;off_target DP=8;DP4=2,0,6,0;AD=2,6;TYPE=SNP;DBXREF=dbSNP:rs2108878,g1000:0.545927; 4 10542058 chr4:SNP:204 C G 375 off_target DP=24;DP4=7,1,14,2;AD=8,16;TYPE=SNP;DBXREF=dbSNP:rs1962796,g1000:0.491214; 4 10559817 chr4:SNP:205 A G 163 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs4698070,g1000:0.496006; 4 10573410 chr4:SNP:206 C A 401 . DP=36;DP4=7,10,8,11;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs17383033,g1000:0.178914,esp5400:0.174813,ExAC:0.154; 4 10586530 chr4:SNP:207 T C 520 off_target DP=41;DP4=8,9,11,13;AD=17,24;TYPE=SNP;DBXREF=dbSNP:rs6846414,g1000:0.179513,esp5400:0.175054,ExAC:0.156; 4 10669522 chr4:SNP:208 A C 340 off_target DP=39;DP4=12,11,8,8;AD=23,16;TYPE=SNP;DBXREF=dbSNP:rs13136927,g1000:0.411741,esp5400:0.471857,ExAC:0.486; 4 13545792 chr4:SNP:209 G T 2181 . DP=83;DP4=0,0,50,33;AD=0,83;TYPE=SNP;DBXREF=dbSNP:rs9684692,g1000:0.644569,esp5400:0.58716,ExAC:0.667,clinvar:rs9684692|2; 4 15480225 chr4:SNP:210 A C 131 low_coverage;off_target DP=11;DP4=4,1,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs9993580,g1000:0.848842; 4 15482477 chr4:SNP:211 A G 262 low_coverage;off_target DP=15;DP4=1,2,4,8;AD=3,12;TYPE=SNP;DBXREF=dbSNP:rs10000250,g1000:0.85024,esp5400:0.855937,ExAC:0.859,clinvar:rs10000250|255; 4 15568992 chr4:SNP:212 T C 1634 . DP=64;DP4=0,0,31,33;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs13121363,g1000:0.66254,esp5400:0.699837,ExAC:0.706,clinvar:rs13121363|255; 4 15569146 chr4:SNP:213 A C 1089 off_target DP=43;DP4=1,0,20,22;AD=1,42;TYPE=SNP;DBXREF=dbSNP:rs13116304,g1000:0.66234,esp5400:0.701945,ExAC:0.703,clinvar:rs13116304|255; 4 15575718 chr4:SNP:214 C G 515 low_coverage;off_target DP=19;DP4=0,0,19,0;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs4280723,g1000:0.66234; 4 15587897 chr4:SNP:215 A T 1788 off_target DP=68;DP4=0,0,38,30;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs6832789,g1000:0.948882,esp5400:0.95773,ExAC:0.987,clinvar:rs6832789|255; 4 15602773 chr4:INDEL:12 C CTTA 889 off_target DP=49;DP4=10,0,32,4;AD=10,36;TYPE=INDEL;DBXREF=dbSNP:rs80080596,g1000:0.934704; 4 15717321 chr4:SNP:216 G A 756 . DP=53;DP4=10,8,22,13;AD=18,35;TYPE=SNP;DBXREF=dbSNP:rs3213710,g1000:0.44349,esp5400:0.43836,ExAC:0.514; 4 15937526 chr4:SNP:217 G A 188 low_coverage;off_target DP=10;DP4=2,0,7,1;AD=2,8;TYPE=SNP;DBXREF=dbSNP:rs1042510,g1000:0.28774,esp5400:0.317624,ExAC:0.308; 4 15937731 chr4:SNP:218 T C 1324 . DP=52;DP4=0,0,34,17;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs2072313,g1000:0.914936,esp5400:0.942926,ExAC:0.954; 4 15972549 chr4:SNP:219 G A 737 off_target DP=28;DP4=0,0,25,3;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs3857147,g1000:0.872404; 4 15982262 chr4:SNP:220 T A 213 low_coverage;off_target DP=11;DP4=0,2,0,9;AD=2,9;TYPE=SNP;DBXREF=dbSNP:rs77314058,g1000:0.0235623; 4 15987509 chr4:INDEL:13 T TTTAAGTATGCTTATTTAATCTGTATTAAATATTTAATACAGA 469 off_target DP=52;DP4=12,17,9,13;AD=29,22;TYPE=INDEL; 4 15987512 chr4:SNP:221 T A 553 off_target DP=21;DP4=0,0,12,9;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2041210,g1000:0.469649; 4 15989190 chr4:INDEL:14 TC T 134 low_variant_fraction;off_target DP=80;DP4=35,34,8,2;AD=69,10;TYPE=INDEL;DBXREF=dbSNP:rs139574888,g1000:0.21226; 4 15989191 chr4:SNP:222 C T 1020 off_target DP=54;DP4=0,0,28,16;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2191004,g1000:0.891174; 4 15991275 chr4:SNP:223 G A 843 off_target DP=33;DP4=0,0,25,8;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs2240685,g1000:0.607228; 4 16002050 chr4:SNP:224 T C 474 low_coverage;off_target DP=18;DP4=0,0,15,3;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs6449212,g1000:0.92512; 4 16002317 chr4:SNP:225 C T 287 low_coverage;off_target DP=12;DP4=0,1,0,11;AD=1,11;TYPE=SNP;DBXREF=dbSNP:rs56413603,g1000:0.108826; 4 16024885 chr4:SNP:226 A G 1105 off_target DP=42;DP4=0,0,26,16;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs2013854,g1000:0.702077; 4 16037352 chr4:SNP:227 C T 257 . DP=32;DP4=8,11,7,6;AD=19,13;TYPE=SNP;DBXREF=dbSNP:rs2078622,g1000:0.296126,esp5400:0.421384,ExAC:0.452,clinvar:rs2078622|2; 4 17494054 chr4:SNP:228 A G 332 low_coverage;off_target DP=13;DP4=0,0,1,12;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs2597772,g1000:0.984225; 4 17503561 chr4:SNP:229 T C 202 off_target DP=27;DP4=3,14,1,9;AD=17,10;TYPE=SNP;DBXREF=dbSNP:rs3733573,g1000:0.192492; 4 17511127 chr4:SNP:230 T C 118 low_coverage;off_target DP=8;DP4=0,3,0,5;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs3733574,g1000:0.270168; 4 20733708 chr4:INDEL:15 CAAAAA CAAAAAA 243 off_target DP=72;DP4=12,16,16,26;AD=28,42;TYPE=INDEL;DBXREF=dbSNP:rs111474115,g1000:0.486821,ExAC:0.475; 4 20734171 chr4:SNP:231 G A 105 low_coverage;off_target DP=15;DP4=10,0,5,0;AD=10,5;TYPE=SNP;DBXREF=dbSNP:rs6812257,g1000:0.312101; 4 20734176 chr4:SNP:232 C G 162 low_coverage;off_target DP=19;DP4=11,0,8,0;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs6811933,g1000:0.489417; 4 20736090 chr4:SNP:233 C T 223 off_target DP=22;DP4=11,0,11,0;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs6447976,g1000:0.336462; 4 20736416 chr4:INDEL:16 A AAAAC 360 off_target DP=42;DP4=4,21,3,14;AD=25,17;TYPE=INDEL;DBXREF=dbSNP:rs112956417,g1000:0.336861; 4 20751278 chr4:SNP:234 A G 720 . DP=55;DP4=7,14,15,19;AD=21,34;TYPE=SNP;DBXREF=dbSNP:rs2322688,g1000:0.336861,esp5400:0.350409,ExAC:0.302; 4 20760644 chr4:SNP:235 A G 290 low_coverage;off_target DP=15;DP4=0,3,0,12;AD=3,12;TYPE=SNP;DBXREF=dbSNP:rs57740160,g1000:0.336062; 4 22748756 chr4:SNP:236 G A 511 off_target DP=20;DP4=0,0,20,0;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1032147,g1000:0.778954; 4 22820504 chr4:SNP:237 A T 2469 . DP=94;DP4=0,0,44,50;AD=0,94;TYPE=SNP;DBXREF=dbSNP:rs358231,g1000:0.891573,esp5400:0.88485,ExAC:0.865; 4 23815125 chr4:SNP:238 G C 158 low_coverage;off_target DP=10;DP4=3,0,7,0;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs2932967,g1000:0.846845; 4 23815294 chr4:SNP:239 G C 354 off_target DP=44;DP4=15,11,12,6;AD=26,18;TYPE=SNP;DBXREF=dbSNP:rs34074379,g1000:0.00419329,esp5400:0.014689,ExAC:0.013; 4 23815924 chr4:SNP:240 T C 1424 . DP=150;DP4=39,37,32,41;AD=76,73;TYPE=SNP;DBXREF=dbSNP:rs2970847,g1000:0.879193,esp5400:0.853783,ExAC:0.836; 4 23886323 chr4:SNP:241 G T 116 off_target DP=24;DP4=15,3,6,0;AD=18,6;TYPE=SNP;DBXREF=dbSNP:rs2946385,g1000:0.383586,esp5400:0.439381,ExAC:0.371; 4 25146307 chr4:SNP:242 G A 185 low_coverage;off_target DP=15;DP4=7,0,8,0;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs2302565,g1000:0.585463; 4 25674905 chr4:INDEL:17 TCACA T 138 low_coverage;off_target DP=12;DP4=3,2,1,5;AD=5,6;TYPE=INDEL;DBXREF=dbSNP:rs778277939; 4 25678199 chr4:SNP:243 A G 2286 . DP=87;DP4=0,0,41,46;AD=0,87;TYPE=SNP;DBXREF=dbSNP:rs6448389,g1000:0.910743,esp5400:0.878416,ExAC:0.863,MutationTaster:0; 4 25678396 chr4:SNP:244 G T 444 off_target DP=36;DP4=4,12,7,13;AD=16,20;TYPE=SNP;DBXREF=dbSNP:rs3733545,g1000:0.319888,esp5400:0.234895,ExAC:0.255; 4 26483208 chr4:SNP:245 C T 399 off_target DP=29;DP4=7,4,13,5;AD=11,18;TYPE=SNP;DBXREF=dbSNP:rs17846984,g1000:0.261981,esp5400:0.253162; 4 26483839 chr4:SNP:246 C A 303 off_target DP=34;DP4=3,16,4,11;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs56270760,g1000:0.133187,esp5400:0.096384,ExAC:0.126; 4 26484629 chr4:SNP:247 G A 186 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs2725301,g1000:0.407748; 4 26491111 chr4:SNP:248 A G 434 . DP=64;DP4=13,28,9,14;AD=41,23;TYPE=SNP;DBXREF=dbSNP:rs1800857,g1000:0.230232,esp5400:0.17559,ExAC:0.171; 4 26491117 chr4:SNP:249 A T 1326 off_target DP=49;DP4=0,0,17,32;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs1800855,g1000:0.390176,esp5400:0.277933,ExAC:0.277; 4 37903669 chr4:SNP:250 A G 119 low_coverage;off_target DP=14;DP4=5,3,5,1;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs2279028,g1000:0.399161,esp5400:0.327779,ExAC:0.278; 4 37903756 chr4:SNP:251 T C 1210 . DP=46;DP4=0,0,32,14;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs2279027,g1000:0.704073,esp5400:0.676985,ExAC:0.623,MutationTaster:0; 4 37904082 chr4:SNP:252 T C 1135 . DP=119;DP4=19,42,24,34;AD=61,58;TYPE=SNP;DBXREF=dbSNP:rs2279026,g1000:0.404353,esp5400:0.336029,ExAC:0.288; 4 37904089 chr4:SNP:253 C T 1153 . DP=119;DP4=18,44,23,34;AD=62,57;TYPE=SNP;DBXREF=dbSNP:rs35859249,g1000:0.0842652,esp5400:0.072876,ExAC:0.094,MutationTaster:0.003; 4 38016395 chr4:SNP:254 T G 905 . DP=90;DP4=17,30,14,29;AD=47,43;TYPE=SNP;DBXREF=dbSNP:rs10501,g1000:0.578474,esp5400:0.473789,ExAC:0.472,MutationTaster:0; 4 38020205 chr4:INDEL:18 T TTCTC 135 low_coverage;off_target DP=13;DP4=0,6,0,6;AD=6,6;TYPE=INDEL;DBXREF=dbSNP:rs61659971,g1000:0.492212; 4 38023302 chr4:SNP:255 C G 1068 . DP=108;DP4=26,31,26,25;AD=57,51;TYPE=SNP;DBXREF=dbSNP:rs34119528,g1000:0.185503,esp5400:0.109872,ExAC:0.163,MutationTaster:1; 4 38047545 chr4:SNP:256 A G 438 off_target DP=51;DP4=13,16,10,12;AD=29,22;TYPE=SNP;DBXREF=dbSNP:rs6845120,g1000:0.38738,esp5400:0.314743,ExAC:0.33; 4 38056045 chr4:SNP:257 A G 128 low_coverage;off_target DP=14;DP4=1,7,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs4832748,g1000:0.186901; 4 38091800 chr4:SNP:258 A G 246 off_target DP=30;DP4=4,14,1,11;AD=18,12;TYPE=SNP;DBXREF=dbSNP:rs2303422,g1000:0.190495; 4 38119885 chr4:SNP:259 G A 710 off_target DP=57;DP4=6,18,6,27;AD=24,33;TYPE=SNP;DBXREF=dbSNP:rs623945,g1000:0.272165; 4 38120014 chr4:INDEL:19 CT CTT 325 low_coverage;off_target DP=15;DP4=0,1,0,14;AD=1,14;TYPE=INDEL;DBXREF=dbSNP:rs66591458,g1000:0.685104; 4 38120029 chr4:SNP:260 T C 108 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs2303423,g1000:0.154553; 4 38774785 chr4:SNP:261 A G 568 . DP=70;DP4=27,14,23,6;AD=41,29;TYPE=SNP;DBXREF=dbSNP:rs10776482,g1000:0.298722,esp5400:0.214817,ExAC:0.251; 4 38774889 chr4:SNP:262 T C 723 . DP=87;DP4=21,28,25,13;AD=49,38;TYPE=SNP;DBXREF=dbSNP:rs4129009,g1000:0.146565,esp5400:0.127533,ExAC:0.174,MutationTaster:0.005; 4 38775040 chr4:SNP:263 A G 725 . DP=88;DP4=31,20,21,16;AD=51,37;TYPE=SNP;DBXREF=dbSNP:rs10776483,g1000:0.298722,esp5400:0.21491,ExAC:0.263; 4 38776107 chr4:SNP:264 T G 1206 . DP=102;DP4=29,16,35,22;AD=45,57;TYPE=SNP;DBXREF=dbSNP:rs11096955,g1000:0.499601,esp5400:0.406302,ExAC:0.428,MutationTaster:0; 4 38776180 chr4:SNP:265 C A 675 . DP=77;DP4=19,23,13,22;AD=42,35;TYPE=SNP;DBXREF=dbSNP:rs11096956,g1000:0.298522,esp5400:0.214857,ExAC:0.262; 4 38776491 chr4:SNP:266 T G 1049 . DP=101;DP4=36,14,33,18;AD=50,51;TYPE=SNP;DBXREF=dbSNP:rs11096957,g1000:0.5,esp5400:0.406209,ExAC:0.428,MutationTaster:0; 4 38798648 chr4:SNP:267 C A 1075 . DP=110;DP4=30,27,29,24;AD=57,53;TYPE=SNP;DBXREF=dbSNP:rs5743618,g1000:0.800519,esp5400:0.485218,ExAC:0.539,clinvar:rs5743618|255,MutationTaster:0; 4 38798935 chr4:SNP:268 C T 695 . DP=102;DP4=29,36,16,21;AD=65,37;TYPE=SNP;DBXREF=dbSNP:rs5743614,g1000:0.559505,esp5400:0.420822,ExAC:0.388; 4 38799710 chr4:SNP:269 T C 342 . DP=25;DP4=5,5,9,6;AD=10,15;TYPE=SNP;DBXREF=dbSNP:rs4833095,g1000:0.574681,esp5400:0.434176,ExAC:0.393,clinvar:rs4833095|255,MutationTaster:0; 4 38830350 chr4:SNP:270 A G 711 . DP=73;DP4=9,28,12,24;AD=37,36;TYPE=SNP;DBXREF=dbSNP:rs5743810,g1000:0.884784,esp5400:0.695204,ExAC:0.739,MutationTaster:0; 4 39205365 chr4:SNP:271 C T 895 off_target DP=34;DP4=0,0,14,20;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1451817,g1000:0.964457,esp5400:0.971226,ExAC:0.991; 4 39207318 chr4:SNP:272 A G 334 . DP=47;DP4=15,14,11,7;AD=29,18;TYPE=SNP;DBXREF=dbSNP:rs17584431,g1000:0.123003,esp5400:0.110104,ExAC:0.154,clinvar:rs17584431|2; 4 39216221 chr4:SNP:273 C T 310 . DP=41;DP4=11,13,10,7;AD=24,17;TYPE=SNP;DBXREF=dbSNP:rs2167494,g1000:0.259784,esp5400:0.303279,ExAC:0.291,clinvar:rs2167494|2; 4 39218569 chr4:SNP:274 G T 234 low_coverage;off_target DP=11;DP4=2,0,9,0;AD=2,9;TYPE=SNP;DBXREF=dbSNP:rs3733288,g1000:0.265375; 4 39229771 chr4:SNP:275 G A 521 off_target DP=43;DP4=16,2,21,4;AD=18,25;TYPE=SNP;DBXREF=dbSNP:rs11730558,g1000:0.282548; 4 39257671 chr4:SNP:276 T C 106 off_target DP=35;DP4=4,24,1,6;AD=28,7;TYPE=SNP;DBXREF=dbSNP:rs7664247; 4 39259190 chr4:SNP:277 A G 482 off_target DP=47;DP4=6,17,8,16;AD=23,24;TYPE=SNP;DBXREF=dbSNP:rs11096987,g1000:0.28115,esp5400:0.324746,ExAC:0.264,clinvar:rs11096987|2; 4 39271541 chr4:SNP:278 A G 232 low_coverage;off_target DP=16;DP4=6,0,9,1;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs3733280,g1000:0.278554; 4 39276623 chr4:INDEL:20 AG AGG 203 off_target DP=34;DP4=5,13,3,10;AD=18,13;TYPE=INDEL;DBXREF=dbSNP:rs11096989,g1000:0.490815,ExAC:0.429; 4 39279724 chr4:SNP:279 T C 328 off_target DP=34;DP4=6,11,1,15;AD=17,16;TYPE=SNP;DBXREF=dbSNP:rs12648082,g1000:0.489417,esp5400:0.527309,ExAC:0.403; 4 39279907 chr4:SNP:280 A G 564 off_target DP=52;DP4=9,16,11,16;AD=25,27;TYPE=SNP;DBXREF=dbSNP:rs2276888,g1000:0.469449; 4 39439744 chr4:SNP:281 G A 101 low_coverage;off_target DP=13;DP4=0,8,0,5;AD=8,5;TYPE=SNP;DBXREF=dbSNP:rs79119738,g1000:0.0145767; 4 39448529 chr4:SNP:282 G A 715 . DP=72;DP4=18,19,13,22;AD=37,35;TYPE=SNP;DBXREF=dbSNP:rs17618244,g1000:0.153754,esp5400:0.150773,ExAC:0.176,MutationTaster:0; 4 39448542 chr4:SNP:283 C G 2276 . DP=90;DP4=2,0,40,48;AD=2,88;TYPE=SNP;DBXREF=dbSNP:rs7685429,g1000:0.765176,esp5400:0.755218,ExAC:0.761; 4 39449824 chr4:SNP:284 G A 461 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2687967,g1000:0.692292; 4 39450229 chr4:SNP:285 C A 1292 . DP=125;DP4=39,23,37,26;AD=62,63;TYPE=SNP;DBXREF=dbSNP:rs4975017,g1000:0.328275,esp5400:0.266313,ExAC:0.343,MutationTaster:0; 4 39460490 chr4:SNP:286 C G 122 low_coverage;off_target DP=7;DP4=2,0,5,0;AD=2,5;TYPE=SNP;DBXREF=dbSNP:rs2276890,g1000:0.322085,ExAC:0.183; 4 39460797 chr4:SNP:287 G A 478 off_target DP=52;DP4=16,13,6,17;AD=29,23;TYPE=SNP;DBXREF=dbSNP:rs2687959,g1000:0.197684,esp5400:0.184965,ExAC:0.216; 4 39472842 chr4:SNP:288 T A 842 off_target DP=32;DP4=0,0,18,14;AD=0,32;TYPE=SNP;DBXREF=dbSNP:rs2125314,g1000:0.336861,esp5400:0.292062,ExAC:0.365,clinvar:rs2125314|2; 4 40045025 chr4:SNP:289 T C 168 low_coverage DP=19;DP4=8,3,7,1;AD=11,8;TYPE=SNP;DBXREF=dbSNP:rs73229741,g1000:0.0135783,ExAC:0.035; 4 40045139 chr4:SNP:290 T C 404 . DP=35;DP4=9,7,10,9;AD=16,19;TYPE=SNP;DBXREF=dbSNP:rs78190142,g1000:0.096246,ExAC:0.055; 4 40045727 chr4:SNP:291 T G 244 low_coverage DP=9;DP4=0,0,1,8;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1704151,g1000:0.981629; 4 40337523 chr4:SNP:292 C T 1638 . DP=64;DP4=0,1,28,35;AD=1,63;TYPE=SNP;DBXREF=dbSNP:rs56241474,g1000:0.217053,esp5400:0.300985,ExAC:0.243; 4 40337908 chr4:SNP:293 T C 2117 . DP=83;DP4=0,0,35,48;AD=0,83;TYPE=SNP;DBXREF=dbSNP:rs10022491,g1000:0.644369,esp5400:0.658859,ExAC:0.577; 4 40337944 chr4:SNP:294 C T 1788 . DP=68;DP4=0,0,23,45;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs56159866,g1000:0.114816,esp5400:0.184328,ExAC:0.186; 4 40350763 chr4:SNP:295 T C 101 low_coverage;off_target DP=13;DP4=8,0,5,0;AD=8,5;TYPE=SNP;DBXREF=dbSNP:rs10029872,g1000:0.509784; 4 40355815 chr4:SNP:296 G A 195 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs4861323,g1000:0.774361; 4 40356422 chr4:SNP:297 A G 10000 . DP=172;DP4=1,1,104,65;AD=2,169;TYPE=SNP;DBXREF=dbSNP:rs10009228,g1000:0.745008,esp5400:0.76873,ExAC:0.784,MutationTaster:0; 4 40356714 chr4:SNP:298 A T 474 low_coverage;off_target DP=18;DP4=0,0,2,16;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4861327,g1000:0.917931; 4 40777961 chr4:SNP:299 C A 273 off_target DP=23;DP4=11,0,12,0;AD=11,12;TYPE=SNP;DBXREF=dbSNP:rs2465571,g1000:0.227037; 4 40778146 chr4:SNP:300 C T 1709 . DP=65;DP4=0,0,37,28;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs2465570,g1000:0.729034,esp5400:0.825586,ExAC:0.767; 4 40778162 chr4:SNP:301 T G 1840 . DP=70;DP4=0,0,46,24;AD=0,70;TYPE=SNP;DBXREF=dbSNP:rs2437323,g1000:0.729233,esp5400:0.825679,ExAC:0.767,MutationTaster:0; 4 40810747 chr4:SNP:302 A G 1002 . DP=37;DP4=0,0,25,12;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs2261167,g1000:0.96905,esp5400:0.9094,ExAC:0.937,MutationTaster:1; 4 40810978 chr4:SNP:303 G A 263 off_target DP=31;DP4=7,10,6,8;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs882733,g1000:0.103435,esp5400:0.139765,ExAC:0.126; 4 41258970 chr4:SNP:304 A G 1735 off_target DP=66;DP4=0,0,45,21;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs11556271,g1000:0.107029,esp5400:0.084418,ExAC:0.111; 4 41258978 chr4:SNP:305 C T 1761 off_target DP=67;DP4=0,0,47,20;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs9321,g1000:0.105631,esp5400:0.083023,ExAC:0.11; 4 41259240 chr4:SNP:306 C G 542 off_target DP=20;DP4=0,0,2,18;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs112424642,g1000:0.104433; 4 41266046 chr4:SNP:307 C A 231 off_target DP=22;DP4=6,5,4,7;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs71608068,g1000:0.0257588; 4 42965159 chr4:SNP:308 A C 623 . DP=23;DP4=0,0,1,22;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs10213360,g1000:0.855032,esp5400:0.823747,ExAC:0.809,clinvar:rs10213360|2; 4 47524932 chr4:SNP:309 T A 203 off_target DP=20;DP4=10,0,10,0;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs4475121,g1000:0.150759; 4 47525009 chr4:SNP:310 T A 802 off_target DP=33;DP4=0,1,14,18;AD=1,32;TYPE=SNP;DBXREF=dbSNP:rs5858076,g1000:0.988419,esp5400:0.989063,ExAC:0.963; 4 47527537 chr4:SNP:311 T G 610 off_target DP=43;DP4=11,3,17,12;AD=14,29;TYPE=SNP;DBXREF=dbSNP:rs6447564,g1000:0.120607,esp5400:0.137479,ExAC:0.151; 4 47538360 chr4:SNP:312 T C 474 low_coverage;off_target DP=18;DP4=0,0,16,2;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs13152689,g1000:0.677316; 4 47560002 chr4:SNP:313 C A 697 . DP=79;DP4=29,16,13,21;AD=45,34;TYPE=SNP;DBXREF=dbSNP:rs34208443,g1000:0.0772764,esp5400:0.141755,ExAC:0.141,MutationTaster:0; 4 47560386 chr4:SNP:314 C T 293 off_target DP=32;DP4=3,15,0,14;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs4298115,g1000:0.33147; 4 47562820 chr4:SNP:315 T C 188 low_coverage;off_target DP=10;DP4=2,0,8,0;AD=2,8;TYPE=SNP;DBXREF=dbSNP:rs73237101,g1000:0.0772764; 4 47582387 chr4:SNP:316 A C 1022 off_target DP=40;DP4=0,0,28,12;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2351791,g1000:0.741613,esp5400:0.76213,ExAC:0.761; 4 47582543 chr4:SNP:317 G A 655 off_target DP=66;DP4=18,15,12,21;AD=33,33;TYPE=SNP;DBXREF=dbSNP:rs141305590,g1000:0.00239617,esp5400:0.003997,ExAC:0.005164; 4 47589299 chr4:SNP:318 C A 373 off_target DP=32;DP4=0,15,2,15;AD=15,17;TYPE=SNP;DBXREF=dbSNP:rs2351790,g1000:0.558307; 4 47589313 chr4:SNP:319 C G 309 off_target DP=21;DP4=0,8,0,13;AD=8,13;TYPE=SNP;DBXREF=dbSNP:rs1316782,g1000:0.144768; 4 47593283 chr4:SNP:320 G C 988 . DP=114;DP4=28,36,17,33;AD=64,50;TYPE=SNP;DBXREF=dbSNP:rs4145944,g1000:0.376997,esp5400:0.44116,ExAC:0.362,MutationTaster:0; 4 47605734 chr4:SNP:321 A G 382 off_target DP=41;DP4=8,13,10,10;AD=21,20;TYPE=SNP;DBXREF=dbSNP:rs17572227,g1000:0.0636981,esp5400:0.097693,ExAC:0.069; 4 47643863 chr4:SNP:322 T C 272 off_target DP=43;DP4=24,4,10,5;AD=28,15;TYPE=SNP;DBXREF=dbSNP:rs17462783,g1000:0.0640974; 4 47666981 chr4:SNP:323 A G 136 low_coverage;off_target DP=11;DP4=4,1,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs17462881,g1000:0.124401; 4 47667064 chr4:SNP:324 T C 1814 . DP=69;DP4=0,0,52,17;AD=0,69;TYPE=SNP;DBXREF=dbSNP:rs11934749,g1000:0.910942,esp5400:0.891151,ExAC:0.876,MutationTaster:0; 4 47679928 chr4:SNP:325 T C 346 off_target DP=25;DP4=7,2,10,6;AD=9,16;TYPE=SNP;DBXREF=dbSNP:rs2271036,g1000:0.379792,esp5400:0.307213,ExAC:0.292; 4 47680085 chr4:SNP:326 T G 231 off_target DP=38;DP4=18,8,7,5;AD=26,12;TYPE=SNP;DBXREF=dbSNP:rs2271037,g1000:0.443091,esp5400:0.373861,ExAC:0.312; 4 47682174 chr4:SNP:327 A G 10000 . DP=166;DP4=1,1,86,78;AD=2,164;TYPE=SNP;DBXREF=dbSNP:rs10517195,g1000:0.371006,esp5400:0.492935,ExAC:0.501; 4 47839929 chr4:SNP:328 C T 763 . DP=29;DP4=0,0,16,13;AD=0,29;TYPE=SNP;DBXREF=dbSNP:rs2289433,g1000:0.69349,esp5400:0.703755,ExAC:0.737,MutationTaster:0; 4 47939092 chr4:SNP:329 T C 1217 . DP=124;DP4=36,28,36,24;AD=64,60;TYPE=SNP;DBXREF=dbSNP:rs201553765,esp5400:0.000102,ExAC:0.0004385; 4 47945455 chr4:SNP:330 C G 316 low_coverage;off_target DP=12;DP4=0,0,4,8;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs6819506,g1000:0.851837,esp5400:0.812292,ExAC:0.777; 4 47951945 chr4:SNP:331 G A 1002 off_target DP=37;DP4=0,0,8,29;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs1972883,g1000:0.880391,esp5400:0.834503,ExAC:0.836; 4 47953515 chr4:SNP:332 A T 1105 off_target DP=42;DP4=0,0,13,29;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs3845160,g1000:0.88099,esp5400:0.837816,ExAC:0.837; 4 47972850 chr4:INDEL:21 GAAAAAAAA GAAAAAAA 629 off_target DP=76;DP4=1,0,45,30;AD=1,75;TYPE=INDEL;DBXREF=dbSNP:rs11292902,g1000:0.459665; 4 47973110 chr4:SNP:333 G A 894 . DP=33;DP4=0,0,17,16;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs7693648,g1000:0.459265,ExAC:0.569,MutationTaster:0; 4 52894726 chr4:SNP:334 C T 410 low_coverage;off_target DP=15;DP4=0,0,15,0;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs225169,g1000:0.464657; 4 52896050 chr4:SNP:335 A G 1024 off_target DP=41;DP4=0,0,16,25;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs225170,g1000:0.355631,esp5400:0.435862,ExAC:0.492,clinvar:rs225170|2; 4 54243905 chr4:SNP:336 T C 372 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs3811782,g1000:0.671725; 4 54245476 chr4:SNP:337 A T 1828 off_target DP=69;DP4=0,0,5,64;AD=0,69;TYPE=SNP;DBXREF=dbSNP:rs1471596,g1000:0.972444,esp5400:0.972486,ExAC:0.992; 4 54248276 chr4:SNP:338 C A 281 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs997832,g1000:0.784345; 4 54248698 chr4:SNP:339 A G 292 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs56998298,g1000:0.457468; 4 54257034 chr4:SNP:340 A T 212 low_coverage;off_target DP=8;DP4=0,0,6,2;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs6847795,g1000:0.973442; 4 54310058 chr4:SNP:341 C A 191 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs28459503,g1000:0.459665; 4 54310188 chr4:SNP:342 A G 773 off_target DP=30;DP4=0,0,15,15;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs11722866,g1000:0.457668,esp5400:0.565452,ExAC:0.589; 4 54310281 chr4:SNP:343 T G 1494 off_target DP=58;DP4=0,1,26,31;AD=1,57;TYPE=SNP;DBXREF=dbSNP:rs11723755,g1000:0.466653,esp5400:0.572996,ExAC:0.592,clinvar:rs11723755|2; 4 54310340 chr4:INDEL:22 TAAAAA TAAAA 380 off_target DP=41;DP4=1,0,16,23;AD=1,39;TYPE=INDEL;DBXREF=dbSNP:rs59279367,g1000:0.457468; 4 55141055 chr4:SNP:344 A G 1089 . DP=45;DP4=0,0,28,17;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs1873778,g1000:0.957668,esp5400:0.958357,ExAC:0.988,clinvar:rs1873778|2; 4 55146406 chr4:INDEL:23 T TTGTAGGTCCCCCAG 621 off_target DP=25;DP4=0,0,23,0;AD=0,23;TYPE=INDEL;DBXREF=dbSNP:rs6148442,g1000:0.955072; 4 55151711 chr4:SNP:345 C A 593 off_target DP=23;DP4=0,0,10,13;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs2412559,g1000:0.955871; 4 55151958 chr4:INDEL:24 T TA 341 low_coverage;off_target DP=18;DP4=0,1,13,3;AD=1,16;TYPE=INDEL;DBXREF=dbSNP:rs3830355,g1000:0.713858,ExAC:0.804; 4 55156400 chr4:SNP:346 A G 246 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2276948,g1000:0.70028; 4 55161254 chr4:SNP:347 C T 273 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3733540,g1000:0.699081,esp5400:0.735081,ExAC:0.802,clinvar:rs3733540|2; 4 55161391 chr4:SNP:348 T C 1432 . DP=54;DP4=0,0,29,25;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs7685117,g1000:0.997204,esp5400:0.997025,ExAC:0.999,clinvar:rs7685117|2; 4 55161517 chr4:SNP:349 A G 375 low_coverage;off_target DP=15;DP4=0,0,1,14;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs7680422,g1000:0.997005; 4 55524304 chr4:SNP:350 T C 983 off_target DP=36;DP4=0,0,11,25;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs999020,g1000:0.557708,esp5400:0.57081; 4 55598202 chr4:SNP:351 G T 120 low_coverage;off_target DP=14;DP4=8,0,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs374679637,esp5400:0.002046,ExAC:0.003758; 4 55599436 chr4:SNP:352 T C 584 off_target DP=22;DP4=0,0,0,22;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs1008658,g1000:0.504792; 4 55948108 chr4:SNP:353 A G 717 off_target DP=27;DP4=0,0,17,10;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs2412617,g1000:0.996805,esp5400:0.997304,ExAC:0.999; 4 55955232 chr4:SNP:354 T C 292 low_coverage;off_target DP=11;DP4=0,0,1,10;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1531289,g1000:0.679113; 4 55964101 chr4:SNP:355 T C 202 low_coverage;off_target DP=17;DP4=5,3,9,0;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs6838752,g1000:0.214856; 4 55964565 chr4:SNP:356 A G 580 off_target DP=59;DP4=2,27,3,26;AD=29,29;TYPE=SNP;DBXREF=dbSNP:rs3816584,g1000:0.215455; 4 55964605 chr4:SNP:357 C T 427 off_target DP=34;DP4=1,14,0,19;AD=15,19;TYPE=SNP;DBXREF=dbSNP:rs2305946,g1000:0.215655; 4 55968053 chr4:SNP:358 A C 509 . DP=38;DP4=10,5,14,9;AD=15,23;TYPE=SNP;DBXREF=dbSNP:rs7655964,g1000:0.292931,esp5400:0.279792,ExAC:0.345; 4 55971846 chr4:SNP:359 G T 119 low_coverage;off_target DP=11;DP4=5,0,6,0;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2305945,g1000:0.343251; 4 55972974 chr4:SNP:360 T A 101 . DP=22;DP4=3,13,2,4;AD=16,6;TYPE=SNP;DBXREF=dbSNP:rs1870377,g1000:0.211861,esp5400:0.19288,ExAC:0.219,clinvar:rs1870377|1,MutationTaster:0; 4 56233552 chr4:SNP:361 T G 360 low_coverage;off_target DP=15;DP4=1,0,14,0;AD=1,14;TYPE=SNP;DBXREF=dbSNP:rs6554276,g1000:0.852636; 4 56262374 chr4:SNP:362 A G 310 . DP=27;DP4=9,4,9,5;AD=13,14;TYPE=SNP;DBXREF=dbSNP:rs1128141,g1000:0.755192,esp5400:0.71435,ExAC:0.55,clinvar:rs1128141|2; 4 56290940 chr4:INDEL:25 T TAATA 312 off_target DP=42;DP4=0,27,0,15;AD=27,15;TYPE=INDEL;DBXREF=dbSNP:rs140080934,g1000:0.522165; 4 56301369 chr4:SNP:363 A G 121 low_coverage;off_target DP=9;DP4=3,0,6,0;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs1801260,g1000:0.229633; 4 56309992 chr4:SNP:364 A G 1003 . DP=107;DP4=28,27,35,16;AD=55,51;TYPE=SNP;DBXREF=dbSNP:rs3736544,g1000:0.723043,esp5400:0.655605,ExAC:0.696; 4 56310343 chr4:SNP:365 C G 105 low_coverage;off_target DP=10;DP4=0,5,1,4;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs3736545,g1000:0.606629; 4 56315178 chr4:SNP:366 T C 132 low_coverage;off_target DP=10;DP4=0,4,0,6;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs6811520,g1000:0.753994; 4 56319105 chr4:SNP:367 C T 531 off_target DP=33;DP4=6,4,20,3;AD=10,23;TYPE=SNP;DBXREF=dbSNP:rs2412647,g1000:0.722843; 4 56319350 chr4:SNP:368 C G 583 off_target DP=48;DP4=6,15,7,20;AD=21,27;TYPE=SNP;DBXREF=dbSNP:rs11240,g1000:0.229433,esp5400:0.242424; 4 56336854 chr4:SNP:369 C T 576 off_target DP=59;DP4=20,11,19,9;AD=31,28;TYPE=SNP;DBXREF=dbSNP:rs116340185,g1000:0.0503195,esp5400:0.031756,ExAC:0.052; 4 56345255 chr4:SNP:370 T C 186 low_coverage;off_target DP=12;DP4=0,4,0,8;AD=4,8;TYPE=SNP;DBXREF=dbSNP:rs13102385,g1000:0.60623; 4 56465418 chr4:SNP:371 T C 927 off_target DP=36;DP4=0,0,8,28;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs1387198,g1000:0.968051,esp5400:0.975851; 4 56466653 chr4:SNP:372 G A 484 off_target DP=25;DP4=3,1,16,5;AD=4,21;TYPE=SNP;DBXREF=dbSNP:rs62310886,g1000:0.0369409,esp5400:0.086332,ExAC:0.078; 4 56471337 chr4:SNP:373 C T 183 off_target DP=25;DP4=14,2,8,1;AD=16,9;TYPE=SNP;DBXREF=dbSNP:rs116755301,g1000:0.0101837; 4 56502094 chr4:SNP:374 G C 390 off_target DP=52;DP4=20,12,11,9;AD=32,20;TYPE=SNP;DBXREF=dbSNP:rs35772728,g1000:0.0922524; 4 56884216 chr4:SNP:375 G A 176 low_coverage;off_target DP=10;DP4=0,3,0,7;AD=3,7;TYPE=SNP;DBXREF=dbSNP:rs142238802,g1000:0.00579073; 4 56890930 chr4:SNP:376 A G 121 low_coverage;off_target DP=18;DP4=0,12,0,6;AD=12,6;TYPE=SNP;DBXREF=dbSNP:rs79684519,g1000:0.0623003; 4 57897570 chr4:SNP:377 G T 1142 off_target DP=46;DP4=0,1,11,34;AD=1,45;TYPE=SNP;DBXREF=dbSNP:rs12621,g1000:0.370607,esp5400:0.33882; 4 57906986 chr4:SNP:378 A T 539 . DP=51;DP4=15,11,13,12;AD=26,25;TYPE=SNP;DBXREF=dbSNP:rs3755906,g1000:0.305511,esp5400:0.359268,ExAC:0.347; 4 57976487 chr4:SNP:379 G A 228 . DP=21;DP4=1,9,1,10;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs11573021,g1000:0.0654952,esp5400:0.101962,ExAC:0.063,MutationTaster:0; 4 66189755 chr4:SNP:380 T C 104 low_coverage;off_target DP=12;DP4=7,0,4,1;AD=7,5;TYPE=SNP;DBXREF=dbSNP:rs77062137,g1000:0.0401358; 4 66197804 chr4:SNP:381 C T 1118 . DP=127;DP4=30,41,26,30;AD=71,56;TYPE=SNP;DBXREF=dbSNP:rs7349683,g1000:0.326677,esp5400:0.282023,ExAC:0.346; 4 66198059 chr4:SNP:382 G A 101 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs7678888,g1000:0.558506; 4 66214043 chr4:SNP:383 G A 148 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2290254,g1000:0.603035; 4 66218728 chr4:SNP:384 C T 237 off_target DP=31;DP4=11,8,7,5;AD=19,12;TYPE=SNP;DBXREF=dbSNP:rs3792649,g1000:0.658746,esp5400:0.627836,ExAC:0.682; 4 66233029 chr4:SNP:385 A G 347 off_target DP=33;DP4=8,9,13,3;AD=17,16;TYPE=SNP;DBXREF=dbSNP:rs2198104,g1000:0.360024,esp5400:0.351862,ExAC:0.421; 4 66270241 chr4:SNP:386 A G 360 off_target DP=33;DP4=5,10,6,12;AD=15,18;TYPE=SNP;DBXREF=dbSNP:rs3749525,g1000:0.145567,esp5400:0.178877,ExAC:0.149; 4 66286088 chr4:SNP:387 G A 1961 off_target DP=74;DP4=0,0,55,19;AD=0,74;TYPE=SNP;DBXREF=dbSNP:rs6551921,g1000:0.967452; 4 66286100 chr4:SNP:388 T C 1778 off_target DP=73;DP4=0,0,52,20;AD=0,72;TYPE=SNP;DBXREF=dbSNP:rs6551922,g1000:0.889577; 4 66286414 chr4:SNP:389 T C 834 off_target DP=33;DP4=1,0,2,30;AD=1,32;TYPE=SNP;DBXREF=dbSNP:rs6551923,g1000:0.97524; 4 66509194 chr4:SNP:390 T C 208 off_target DP=25;DP4=3,12,2,8;AD=15,10;TYPE=SNP;DBXREF=dbSNP:rs4343775,g1000:0.576278,esp5400:0.594532,ExAC:0.584; 4 68777054 chr4:SNP:391 C T 542 . DP=44;DP4=15,4,20,5;AD=19,25;TYPE=SNP;DBXREF=dbSNP:rs12646286,g1000:0.241214,esp5400:0.15198,ExAC:0.227; 4 68780253 chr4:SNP:392 G A 293 off_target DP=29;DP4=13,2,10,4;AD=15,14;TYPE=SNP;DBXREF=dbSNP:rs1371933,g1000:0.529553; 4 68780399 chr4:SNP:393 A G 511 . DP=45;DP4=9,12,10,14;AD=21,24;TYPE=SNP;DBXREF=dbSNP:rs1371932,g1000:0.484225,esp5400:0.493679,ExAC:0.534; 4 68784774 chr4:SNP:394 T C 768 . DP=114;DP4=45,27,29,13;AD=72,42;TYPE=SNP;DBXREF=dbSNP:rs353163,g1000:0.73143,esp5400:0.734616,ExAC:0.678,MutationTaster:0; 4 68788694 chr4:SNP:395 G A 811 off_target DP=55;DP4=2,17,7,29;AD=19,36;TYPE=SNP;DBXREF=dbSNP:rs353159,g1000:0.740415,esp5400:0.745585,ExAC:0.68; 4 68788719 chr4:SNP:396 T C 631 off_target DP=43;DP4=2,13,4,24;AD=15,28;TYPE=SNP;DBXREF=dbSNP:rs2119382,g1000:0.677117; 4 68789778 chr4:SNP:397 G T 251 low_coverage;off_target DP=17;DP4=3,2,10,1;AD=5,11;TYPE=SNP;DBXREF=dbSNP:rs6839279,g1000:0.142971,esp5400:0.136364; 4 68795815 chr4:SNP:398 A G 973 off_target DP=86;DP4=4,36,13,33;AD=40,46;TYPE=SNP;DBXREF=dbSNP:rs17578509,g1000:0.128395; 4 68812283 chr4:SNP:399 C T 2647 . DP=100;DP4=0,0,47,53;AD=0,100;TYPE=SNP;DBXREF=dbSNP:rs11930532,g1000:0.620807,esp5400:0.660439,ExAC:0.737; 4 68829207 chr4:SNP:400 G A 465 low_coverage;off_target DP=17;DP4=0,0,3,14;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6552134,g1000:0.578674,esp5400:0.6812; 4 69416556 chr4:SNP:401 T C 1501 . DP=60;DP4=1,0,38,21;AD=1,59;TYPE=SNP;DBXREF=dbSNP:rs13102139,esp5400:0.197836,ExAC:0.288; 4 69426440 chr4:SNP:402 G A 387 low_coverage;off_target DP=15;DP4=0,0,6,9;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs62316990; 4 69426476 chr4:SNP:403 G C 403 off_target DP=29;DP4=1,10,3,15;AD=11,18;TYPE=SNP;DBXREF=dbSNP:rs150409140; 4 69431097 chr4:SNP:404 A T 372 low_coverage;off_target DP=14;DP4=0,0,12,2;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs6856641,g1000:0.990815; 4 69433279 chr4:SNP:405 A G 335 low_coverage;off_target DP=13;DP4=0,0,12,1;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7436338,g1000:0.989816; 4 69433293 chr4:SNP:406 A C 478 low_coverage;off_target DP=18;DP4=0,0,17,1;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs62317000,g1000:0.20647; 4 69433714 chr4:SNP:407 C T 1458 . DP=55;DP4=0,0,36,19;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs34664906,g1000:0.282947,esp5400:0.388153,ExAC:0.407; 4 69434217 chr4:SNP:408 G A 876 off_target DP=33;DP4=0,0,20,13;AD=0,33;TYPE=SNP;DBXREF=dbSNP:rs28672900,g1000:0.99401,esp5400:0.990551,ExAC:0.997; 4 69434400 chr4:SNP:409 C T 437 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs62317003,g1000:0.927716; 4 69512595 chr4:SNP:410 C A 224 off_target DP=25;DP4=13,0,12,0;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs35791822,g1000:0.115615; 4 69512651 chr4:INDEL:26 TC TCC 822 off_target DP=44;DP4=5,0,38,0;AD=5,38;TYPE=INDEL;DBXREF=dbSNP:rs372348058; 4 69512654 chr4:SNP:411 G A 664 off_target DP=28;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs3100,g1000:0.374002; 4 69512847 chr4:SNP:412 T G 2285 . DP=88;DP4=0,1,33,54;AD=1,87;TYPE=SNP;DBXREF=dbSNP:rs4148269,g1000:0.367612,esp5400:0.494697,ExAC:0.545,MutationTaster:0; 4 69528890 chr4:SNP:413 A T 319 off_target DP=67;DP4=15,34,7,11;AD=49,18;TYPE=SNP;DBXREF=dbSNP:rs62298394,g1000:0.0958466,esp5400:0.163597; 4 69528947 chr4:SNP:414 G C 245 off_target DP=32;DP4=1,18,0,12;AD=19,12;TYPE=SNP;DBXREF=dbSNP:rs1947435; 4 69528952 chr4:SNP:415 A G 384 off_target DP=30;DP4=1,12,1,16;AD=13,17;TYPE=SNP;DBXREF=dbSNP:rs2278915; 4 69533702 chr4:SNP:416 T A 339 off_target DP=36;DP4=16,4,11,5;AD=20,16;TYPE=SNP;DBXREF=dbSNP:rs2045100,g1000:0.24401; 4 69536084 chr4:SNP:417 A C 3190 . DP=126;DP4=1,0,58,67;AD=1,125;TYPE=SNP;DBXREF=dbSNP:rs1902023,g1000:0.546526,esp5400:0.50791,ExAC:0.502,clinvar:rs1902023|6,MutationTaster:0; 4 69681619 chr4:SNP:418 C T 462 off_target DP=50;DP4=22,6,20,2;AD=28,22;TYPE=SNP;DBXREF=dbSNP:rs113556972,g1000:0.0441294; 4 69681675 chr4:SNP:419 A T 654 off_target DP=90;DP4=38,18,24,10;AD=56,34;TYPE=SNP;DBXREF=dbSNP:rs294776,g1000:0.740216; 4 69681848 chr4:SNP:420 T C 1293 . DP=112;DP4=22,29,28,33;AD=51,61;TYPE=SNP;DBXREF=dbSNP:rs61749966,g1000:0.0439297,esp5400:0.074698,ExAC:0.065; 4 69681936 chr4:SNP:421 G T 1314 . DP=131;DP4=41,26,45,19;AD=67,64;TYPE=SNP;DBXREF=dbSNP:rs61750900,g1000:0.0439297,esp5400:0.074763,ExAC:0.065,clinvar:rs61750900|6,MutationTaster:0; 4 69682471 chr4:SNP:422 A G 902 off_target DP=34;DP4=0,0,3,31;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs294777,g1000:0.921925,esp5400:0.929377,ExAC:0.977; 4 69682509 chr4:SNP:423 A G 249 off_target DP=20;DP4=0,8,1,11;AD=8,12;TYPE=SNP;DBXREF=dbSNP:rs113475342,g1000:0.04373; 4 69682555 chr4:SNP:424 G A 198 low_coverage;off_target DP=16;DP4=0,7,0,9;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs294778,g1000:0.766973; 4 69683953 chr4:SNP:425 G C 1990 off_target DP=73;DP4=0,0,9,64;AD=0,73;TYPE=SNP;DBXREF=dbSNP:rs835310,g1000:0.826278; 4 69687964 chr4:SNP:426 G A 213 off_target DP=27;DP4=10,6,5,6;AD=16,11;TYPE=SNP;DBXREF=dbSNP:rs861340,g1000:0.67472,esp5400:0.724196,ExAC:0.837; 4 69687987 chr4:SNP:427 C A 773 . DP=30;DP4=0,0,16,14;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs2942857,g1000:0.848842,esp5400:0.871421,ExAC:0.951,MutationTaster:1; 4 69688125 chr4:SNP:428 G T 692 . DP=83;DP4=26,21,16,20;AD=47,36;TYPE=SNP;DBXREF=dbSNP:rs146889061,g1000:0.0439297,esp5400:0.073767,ExAC:0.065; 4 69696638 chr4:SNP:429 A G 177 off_target DP=29;DP4=9,10,3,7;AD=19,10;TYPE=SNP;DBXREF=dbSNP:rs17146905,g1000:0.0896565,esp5400:0.073488,ExAC:0.084; 4 69696648 chr4:SNP:430 T C 226 low_coverage;off_target DP=19;DP4=2,6,4,7;AD=8,11;TYPE=SNP;DBXREF=dbSNP:rs4694358,g1000:0.122404,esp5400:0.099307; 4 69795397 chr4:SNP:431 G A 341 off_target DP=23;DP4=8,0,15,0;AD=8,15;TYPE=SNP;DBXREF=dbSNP:rs3749513,g1000:0.668331; 4 69795626 chr4:SNP:432 C T 407 . DP=56;DP4=10,25,3,18;AD=35,21;TYPE=SNP;DBXREF=dbSNP:rs13128286,g1000:0.676318,esp5400:0.750046,ExAC:0.765,MutationTaster:0.001; 4 69795871 chr4:SNP:433 G C 629 off_target DP=59;DP4=11,18,6,24;AD=29,30;TYPE=SNP;DBXREF=dbSNP:rs3749511; 4 69796548 chr4:SNP:434 G A 440 off_target DP=42;DP4=6,15,4,17;AD=21,21;TYPE=SNP;DBXREF=dbSNP:rs2017125,g1000:0.676318; 4 69796838 chr4:SNP:435 G A 425 low_coverage;off_target DP=16;DP4=0,0,8,8;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs3966087,g1000:0.780551,esp5400:0.851924,ExAC:0.914; 4 69875627 chr4:SNP:436 G A 1577 . DP=61;DP4=1,1,41,18;AD=2,59;TYPE=SNP;DBXREF=dbSNP:rs2331627,g1000:0.488219,esp5400:0.709338,ExAC:0.686; 4 69879718 chr4:SNP:437 A G 1629 off_target DP=65;DP4=1,0,34,30;AD=1,64;TYPE=SNP;DBXREF=dbSNP:rs2292524,g1000:0.555711,esp5400:0.728315,ExAC:0.726; 4 69886151 chr4:SNP:438 A T 2378 off_target DP=89;DP4=0,1,17,71;AD=1,88;TYPE=SNP;DBXREF=dbSNP:rs11730623,g1000:0.543131,esp5400:0.672339; 4 69886275 chr4:SNP:439 T C 195 off_target DP=24;DP4=0,13,0,10;AD=13,10;TYPE=SNP;DBXREF=dbSNP:rs4694550,g1000:0.129792; 4 69962078 chr4:SNP:440 T C 400 low_coverage;off_target DP=16;DP4=0,0,16,0;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs7668258,g1000:0.665136; 4 69962610 chr4:SNP:441 A G 577 . DP=91;DP4=21,37,14,19;AD=58,33;TYPE=SNP;DBXREF=dbSNP:rs28365063,g1000:0.133586,esp5400:0.140672,ExAC:0.156; 4 69964180 chr4:SNP:442 T C 690 off_target DP=26;DP4=0,0,26,0;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs7439326,g1000:0.665136; 4 69964209 chr4:SNP:443 A G 646 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs7438244,g1000:0.665136,esp5400:0.554256,ExAC:0.558; 4 69964271 chr4:SNP:444 A G 621 . DP=42;DP4=9,4,20,9;AD=13,29;TYPE=SNP;DBXREF=dbSNP:rs28365062,g1000:0.148562,esp5400:0.140825,ExAC:0.166; 4 69964337 chr4:SNP:445 A T 1881 . DP=69;DP4=0,0,39,30;AD=0,69;TYPE=SNP;DBXREF=dbSNP:rs7438284,g1000:0.665136,esp5400:0.198736,ExAC:0.56; 4 69964338 chr4:SNP:446 T C 1749 . DP=66;DP4=0,0,36,30;AD=0,66;TYPE=SNP;DBXREF=dbSNP:rs7439366,g1000:0.665136,esp5400:0.207326,ExAC:0.56,MutationTaster:0; 4 69964521 chr4:SNP:447 G A 928 off_target DP=34;DP4=0,0,1,33;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs7441750,g1000:0.665136; 4 69964554 chr4:SNP:448 G A 601 off_target DP=22;DP4=0,0,0,22;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs7441774,g1000:0.665335; 4 69972777 chr4:SNP:449 G A 355 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs5013211,g1000:0.670927; 4 69972949 chr4:SNP:450 C G 1696 . DP=64;DP4=0,0,34,30;AD=0,64;TYPE=SNP;DBXREF=dbSNP:rs4292394,g1000:0.670927,esp5400:0.572597,ExAC:0.557; 4 69972952 chr4:SNP:451 C T 430 . DP=69;DP4=26,20,11,12;AD=46,23;TYPE=SNP;DBXREF=dbSNP:rs4348159,g1000:0.170927,esp5400:0.162949; 4 69973044 chr4:SNP:452 A T 557 off_target DP=21;DP4=0,0,11,10;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs4337789,g1000:0.670927; 4 69973134 chr4:INDEL:27 CA C 275 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=INDEL;DBXREF=dbSNP:rs11302069,g1000:0.670927; 4 69973640 chr4:SNP:453 A G 206 low_coverage;off_target DP=8;DP4=0,0,6,2;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs4314345,g1000:0.670927; 4 69973667 chr4:SNP:454 C G 1320 off_target DP=50;DP4=0,0,49,0;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs4588522,g1000:0.670927; 4 69973692 chr4:SNP:455 C T 1446 off_target DP=53;DP4=0,0,53,0;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs4364327,g1000:0.671526; 4 69978068 chr4:SNP:456 G A 593 off_target DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs7658752,g1000:0.667332; 4 70146230 chr4:SNP:457 G A 1114 . DP=42;DP4=0,0,29,13;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs13139691,g1000:0.640176,esp5400:0.740085,ExAC:0.736; 4 70146804 chr4:SNP:458 G C 927 . DP=36;DP4=0,0,20,16;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs148987832,g1000:0.107827,esp5400:0.164894,ExAC:0.156,MutationTaster:0; 4 70156146 chr4:SNP:459 A G 309 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4235126,g1000:0.633986; 4 70160338 chr4:SNP:460 G C 1373 . DP=55;DP4=0,1,19,35;AD=1,54;TYPE=SNP;DBXREF=dbSNP:rs72552703,g1000:0.242412,esp5400:0.185153,ExAC:0.231; 4 70160342 chr4:SNP:461 T C 1167 . DP=44;DP4=0,0,11,33;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs72552704,g1000:0.239018,esp5400:0.060058,ExAC:0.23,MutationTaster:1; 4 70160343 chr4:SNP:462 G C 1114 . DP=42;DP4=0,0,10,32;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs72552705,g1000:0.239018,esp5400:0.067661,ExAC:0.23,MutationTaster:1; 4 70455231 chr4:SNP:463 G A 206 . DP=35;DP4=12,12,8,3;AD=24,11;TYPE=SNP;DBXREF=dbSNP:rs41292305,g1000:0.0141773,esp5400:0.028816,ExAC:0.032; 4 70465153 chr4:SNP:464 A T 240 off_target DP=20;DP4=4,5,3,8;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs3775782,g1000:0.421326,esp5400:0.378092,ExAC:0.416; 4 70512721 chr4:SNP:465 G T 585 . DP=54;DP4=14,13,13,14;AD=27,27;TYPE=SNP;DBXREF=dbSNP:rs72552708,g1000:0.0279553,esp5400:0.044068,ExAC:0.051; 4 70512787 chr4:SNP:466 A T 754 . DP=62;DP4=11,16,19,16;AD=27,35;TYPE=SNP;DBXREF=dbSNP:rs111696697,g1000:0.0145767,esp5400:0.031517,ExAC:0.033; 4 70513139 chr4:SNP:467 C T 2827 . DP=110;DP4=0,0,49,61;AD=0,110;TYPE=SNP;DBXREF=dbSNP:rs1347046,g1000:1,ExAC:1; 4 70723444 chr4:SNP:468 C G 285 off_target DP=32;DP4=0,18,0,14;AD=18,14;TYPE=SNP;DBXREF=dbSNP:rs4149530,g1000:0.259185; 4 70898907 chr4:SNP:469 C T 802 . DP=72;DP4=17,17,18,20;AD=34,38;TYPE=SNP;DBXREF=dbSNP:rs1849937,g1000:0.11242,esp5400:0.075758,ExAC:0.108; 4 70899037 chr4:SNP:470 T A 258 off_target DP=20;DP4=0,8,1,11;AD=8,12;TYPE=SNP;DBXREF=dbSNP:rs776852,g1000:0.795727; 4 71498303 chr4:SNP:471 G A 494 off_target DP=39;DP4=11,6,12,10;AD=17,22;TYPE=SNP;DBXREF=dbSNP:rs144929717,g1000:0.103834,esp5400:0.081374; 4 71501674 chr4:SNP:472 A G 664 off_target DP=64;DP4=4,29,4,27;AD=33,31;TYPE=SNP;DBXREF=dbSNP:rs139228330,g1000:0.103834,esp5400:0.084299; 4 71509086 chr4:SNP:473 T C 717 . DP=65;DP4=14,16,21,14;AD=30,35;TYPE=SNP;DBXREF=dbSNP:rs7671281,g1000:0.181709,esp5400:0.180331,ExAC:0.085,clinvar:rs7671281|2,MutationTaster:0; 4 71509431 chr4:SNP:474 G A 1013 . DP=95;DP4=34,11,33,17;AD=45,50;TYPE=SNP;DBXREF=dbSNP:rs3796704,g1000:0.13778,esp5400:0.137758,ExAC:0.072,clinvar:rs3796704|2,MutationTaster:0; 4 71892513 chr4:SNP:475 A T 927 off_target DP=36;DP4=0,0,11,25;AD=0,36;TYPE=SNP;DBXREF=dbSNP:rs1486271,g1000:0.786941,esp5400:0.795149,ExAC:0.913; 4 72316822 chr4:SNP:476 C T 515 off_target DP=20;DP4=0,0,17,3;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs10022349,g1000:0.989417; 4 72397710 chr4:SNP:477 C T 1352 off_target DP=51;DP4=0,0,37,14;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs3775162,g1000:0.372204; 4 72397964 chr4:SNP:478 T C 1374 off_target DP=55;DP4=0,0,15,38;AD=0,53;TYPE=SNP;DBXREF=dbSNP:rs10446504,g1000:0.709864; 4 72399713 chr4:SNP:479 A C 206 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs1453450,g1000:0.715855; 4 72400242 chr4:SNP:480 G T 562 off_target DP=20;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs12696756,g1000:0.372404; 4 72411967 chr4:SNP:481 A G 200 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs4694097,g1000:0.959465; 4 72423624 chr4:SNP:482 C T 437 low_coverage;off_target DP=16;DP4=0,0,0,16;AD=0,16;TYPE=SNP;DBXREF=dbSNP:rs1453474,g1000:0.786342,esp5400:0.859175,ExAC:0.891; 4 72425863 chr4:SNP:483 C T 1802 . DP=68;DP4=0,0,38,30;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs1453458,g1000:0.782348,esp5400:0.856479,ExAC:0.889; 4 72429371 chr4:SNP:484 G A 180 low_coverage;off_target DP=7;DP4=0,0,7,0;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs2290399,g1000:0.794728; 4 72429409 chr4:SNP:485 A G 273 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2290398,g1000:0.788538; 4 72429433 chr4:SNP:486 G A 323 off_target DP=22;DP4=5,2,11,4;AD=7,15;TYPE=SNP;DBXREF=dbSNP:rs6812916,g1000:0.190096; 4 72429452 chr4:SNP:487 G A 847 off_target DP=31;DP4=0,0,19,12;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs2290397,g1000:0.787141; 4 72433545 chr4:SNP:488 A C 604 . DP=60;DP4=21,8,20,11;AD=29,31;TYPE=SNP;DBXREF=dbSNP:rs1062677,g1000:0.171725,esp5400:0.169411,ExAC:0.152,MutationTaster:1; 4 72433759 chr4:SNP:489 C T 717 off_target DP=27;DP4=0,0,0,27;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs1453453,g1000:0.911542; 4 72618296 chr4:SNP:490 T C 2146 . DP=81;DP4=0,0,37,44;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs9016,g1000:0.992812,esp5400:0.993493,ExAC:0.998,MutationTaster:0; 4 72618323 chr4:SNP:491 G T 365 . DP=66;DP4=19,27,7,13;AD=46,20;TYPE=SNP;DBXREF=dbSNP:rs4588,g1000:0.207867,esp5400:0.226157,ExAC:0.253,clinvar:rs4588|2,MutationTaster:0; 4 72618334 chr4:SNP:492 A C 815 . DP=43;DP4=3,6,15,19;AD=9,34;TYPE=SNP;DBXREF=dbSNP:rs7041,g1000:0.381589,esp5400:0.42638,ExAC:0.516,clinvar:rs7041|2,MutationTaster:0; 4 72620865 chr4:INDEL:28 C CTATTTATT 172 off_target DP=21;DP4=8,4,0,8;AD=12,8;TYPE=INDEL;DBXREF=dbSNP:rs71673486,g1000:0.26238,ExAC:0.201; 4 72622403 chr4:SNP:493 A C 913 off_target DP=36;DP4=1,0,24,11;AD=1,35;TYPE=SNP;DBXREF=dbSNP:rs222033,g1000:0.99381,esp5400:0.993586,ExAC:0.998; 4 72634975 chr4:SNP:494 G A 710 off_target DP=26;DP4=0,0,23,3;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs222016,g1000:0.663738; 4 72934632 chr4:SNP:495 C T 345 low_coverage;off_target DP=13;DP4=0,0,12,1;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs9884478,g1000:0.791534; 4 73003569 chr4:SNP:496 A G 383 low_coverage;off_target DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs11940196,g1000:0.595847; 4 74277908 chr4:SNP:497 G T 258 off_target DP=25;DP4=3,9,4,9;AD=12,13;TYPE=SNP;DBXREF=dbSNP:rs16849331,g1000:0.0301518; 4 74302215 chr4:SNP:498 T A 328 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs3796676,g1000:0.476438; 4 74302800 chr4:SNP:499 A C 151 low_coverage;off_target DP=16;DP4=7,2,6,1;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs41265655,g1000:0.0780751; 4 74302870 chr4:SNP:500 T C 318 . DP=23;DP4=3,5,8,7;AD=8,15;TYPE=SNP;DBXREF=dbSNP:rs16849384,g1000:0.423722,esp5400:0.393734,ExAC:0.421; 4 74304118 chr4:SNP:501 T A 1249 off_target DP=50;DP4=0,0,14,36;AD=0,50;TYPE=SNP;DBXREF=dbSNP:rs6446932,g1000:0.980631; 4 74313053 chr4:SNP:502 C T 120 low_coverage;off_target DP=12;DP4=5,1,4,2;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs72647033,g1000:0.0634984; 4 74313169 chr4:SNP:503 T C 519 low_coverage DP=19;DP4=0,0,10,9;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs7667494,g1000:0.997204,esp5400:0.998047,ExAC:0.999; 4 74318330 chr4:SNP:504 A G 1056 . DP=41;DP4=0,0,16,25;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs4235117,g1000:0.977037,esp5400:0.979922,ExAC:0.994; 4 74863997 chr4:SNP:505 T C 10000 . DP=132;DP4=1,0,74,57;AD=1,131;TYPE=SNP;DBXREF=dbSNP:rs425535,g1000:0.813099,esp5400:0.790389,ExAC:0.869; 4 75681217 chr4:SNP:506 A G 450 off_target DP=23;DP4=0,4,6,13;AD=4,19;TYPE=SNP;DBXREF=dbSNP:rs11734944,g1000:0.43131,esp5400:0.374047,ExAC:0.427; 4 76943137 chr4:SNP:507 G C 667 off_target DP=64;DP4=15,17,13,19;AD=32,32;TYPE=SNP;DBXREF=dbSNP:rs4859584,g1000:0.691094,esp5400:0.617044,ExAC:0.606; 4 76943235 chr4:SNP:508 T C 220 off_target DP=21;DP4=2,8,1,10;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs4859586,g1000:0.691294; 4 76943296 chr4:SNP:509 A C 187 low_coverage;off_target DP=15;DP4=3,4,1,7;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs4859587,g1000:0.691294; 4 76943677 chr4:SNP:510 G A 281 off_target DP=24;DP4=8,3,7,6;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs4859588,g1000:0.691294; 4 76944491 chr4:SNP:511 T C 550 off_target DP=42;DP4=8,9,15,10;AD=17,25;TYPE=SNP;DBXREF=dbSNP:rs4241578,g1000:0.691294,esp5400:0.598338,ExAC:0.606; 4 76955914 chr4:SNP:512 T C 257 off_target DP=35;DP4=12,7,10,5;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs6532111,g1000:0.690495,esp5400:0.595699,ExAC:0.584; 4 76956188 chr4:SNP:513 T C 470 off_target DP=50;DP4=16,11,16,7;AD=27,23;TYPE=SNP;DBXREF=dbSNP:rs4241580,g1000:0.690495,esp5400:0.597341,ExAC:0.606; 4 76956289 chr4:INDEL:29 CAA CAAAA 596 off_target DP=54;DP4=16,12,17,8;AD=28,25;TYPE=INDEL;DBXREF=dbSNP:rs5859488,g1000:0.690495,ExAC:0.606; 4 76956528 chr4:SNP:514 A G 222 low_coverage;off_target DP=11;DP4=2,0,1,8;AD=2,9;TYPE=SNP;DBXREF=dbSNP:rs4859415,g1000:0.690495,esp5400:0.59723,ExAC:0.603; 4 76957171 chr4:SNP:515 C T 514 off_target DP=53;DP4=15,13,16,9;AD=28,25;TYPE=SNP;DBXREF=dbSNP:rs6819597,g1000:0.690695,esp5400:0.597509,ExAC:0.606; 4 77357528 chr4:SNP:516 G T 117 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs11944802,g1000:0.18151; 4 77631425 chr4:SNP:517 T A 206 . DP=30;DP4=12,7,5,6;AD=19,11;TYPE=SNP;DBXREF=dbSNP:rs3821979,g1000:0.21905,esp5400:0.147425,ExAC:0.18,MutationTaster:0.695; 4 77652219 chr4:SNP:518 T C 411 off_target DP=54;DP4=3,30,1,20;AD=33,21;TYPE=SNP;DBXREF=dbSNP:rs344135,g1000:0.215455; 4 77660162 chr4:SNP:519 G C 10000 . DP=195;DP4=1,1,83,108;AD=2,191;TYPE=SNP;DBXREF=dbSNP:rs344140,g1000:0.664936,esp5400:0.710727,ExAC:0.716,MutationTaster:0; 4 77660731 chr4:SNP:520 C G 702 . DP=70;DP4=19,17,15,19;AD=36,34;TYPE=SNP;DBXREF=dbSNP:rs344141,g1000:0.438498,esp5400:0.55317,ExAC:0.534,MutationTaster:0.997; 4 77662248 chr4:SNP:521 G A 169 low_coverage DP=17;DP4=5,4,5,3;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs344142,g1000:0.432308,esp5400:0.650842,ExAC:0.461; 4 77662309 chr4:SNP:522 C T 693 . DP=64;DP4=20,11,25,8;AD=31,33;TYPE=SNP;DBXREF=dbSNP:rs344143,g1000:0.380591,esp5400:0.402246,ExAC:0.369; 4 77675505 chr4:SNP:523 C T 128 . DP=22;DP4=10,5,5,2;AD=15,7;TYPE=SNP;DBXREF=dbSNP:rs3733242,g1000:0.529353,esp5400:0.486522,ExAC:0.461,MutationTaster:0; 4 79176245 chr4:SNP:524 G A 355 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs1017648,g1000:0.922125; 4 79176325 chr4:SNP:525 C T 1909 off_target DP=70;DP4=0,0,52,18;AD=0,70;TYPE=SNP;DBXREF=dbSNP:rs1017647,g1000:0.922125; 4 79176361 chr4:SNP:526 T C 10000 off_target DP=119;DP4=0,0,70,49;AD=0,119;TYPE=SNP;DBXREF=dbSNP:rs1017646,g1000:0.922125,esp5400:0.939802,ExAC:0.952; 4 79186171 chr4:SNP:527 G A 1167 . DP=44;DP4=0,0,23,21;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs2867014,g1000:0.922125,esp5400:0.934691,ExAC:0.973,clinvar:rs2867014|2; 4 79187832 chr4:SNP:528 G A 410 low_coverage;off_target DP=15;DP4=0,0,15,0;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs2008587,g1000:0.927516; 4 79187900 chr4:SNP:529 T G 242 off_target DP=27;DP4=10,4,9,4;AD=14,13;TYPE=SNP;DBXREF=dbSNP:rs7694740,g1000:0.417133; 4 79188160 chr4:SNP:530 C T 1441 off_target DP=56;DP4=0,0,23,33;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs2008786,g1000:0.579273; 4 79204209 chr4:SNP:531 C T 490 low_coverage;off_target DP=19;DP4=0,0,9,10;AD=0,19;TYPE=SNP;DBXREF=dbSNP:rs1378236,g1000:0.958866; 4 79229037 chr4:SNP:532 T C 132 low_coverage;off_target DP=13;DP4=7,0,6,0;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs345529,g1000:0.558906; 4 79238448 chr4:SNP:533 T C 284 off_target DP=25;DP4=8,3,10,4;AD=11,14;TYPE=SNP;DBXREF=dbSNP:rs345515,g1000:0.625599; 4 79238649 chr4:SNP:534 T C 1145 . DP=103;DP4=23,24,34,22;AD=47,56;TYPE=SNP;DBXREF=dbSNP:rs345514,esp5400:0.797937,ExAC:0.742,clinvar:rs345514|2,MutationTaster:0; 4 79240063 chr4:SNP:535 A G 487 . DP=56;DP4=16,15,11,14;AD=31,25;TYPE=SNP;DBXREF=dbSNP:rs345513,g1000:0.434305,esp5400:0.409918,ExAC:0.41,clinvar:rs345513|2,MutationTaster:0; 4 79284694 chr4:SNP:536 C T 1095 . DP=126;DP4=44,27,32,23;AD=71,55;TYPE=SNP;DBXREF=dbSNP:rs6835769,g1000:0.335463,esp5400:0.426827,ExAC:0.477,clinvar:rs6835769|2,MutationTaster:0; 4 79300656 chr4:SNP:537 C T 322 low_coverage;off_target DP=17;DP4=4,0,13,0;AD=4,13;TYPE=SNP;DBXREF=dbSNP:rs11098164,g1000:0.578075; 4 79300993 chr4:SNP:538 G A 1288 . DP=122;DP4=33,27,34,28;AD=60,62;TYPE=SNP;DBXREF=dbSNP:rs12512164,g1000:0.213259,esp5400:0.235452,ExAC:0.264,clinvar:rs12512164|2,MutationTaster:0; 4 79305148 chr4:SNP:539 C G 203 low_coverage;off_target DP=11;DP4=3,0,7,1;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs7694602,g1000:0.21226; 4 79305177 chr4:SNP:540 T G 123 low_coverage;off_target DP=17;DP4=10,1,6,0;AD=11,6;TYPE=SNP;DBXREF=dbSNP:rs7677133,g1000:0.212859,esp5400:0.236693,ExAC:0.265; 4 79339950 chr4:SNP:541 G C 132 low_coverage;off_target DP=13;DP4=7,0,6,0;AD=7,6;TYPE=SNP;DBXREF=dbSNP:rs12649596,g1000:0.30631; 4 79345650 chr4:SNP:542 A G 125 low_coverage;off_target DP=14;DP4=4,4,2,4;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs1471752,g1000:0.286941,esp5400:0.342138; 4 79345652 chr4:INDEL:30 CATT C 101 low_coverage;off_target DP=18;DP4=8,4,1,4;AD=12,5;TYPE=INDEL;DBXREF=dbSNP:rs149695943,g1000:0.00259585; 4 79359885 chr4:SNP:543 T G 709 off_target DP=86;DP4=27,22,21,16;AD=49,37;TYPE=SNP;DBXREF=dbSNP:rs2170899,g1000:0.28155,esp5400:0.297963,ExAC:0.334,clinvar:rs2170899|2; 4 79366655 chr4:SNP:544 G C 997 off_target DP=92;DP4=22,20,27,22;AD=42,49;TYPE=SNP;DBXREF=dbSNP:rs3749489,g1000:0.275759,esp5400:0.288532,ExAC:0.354; 4 79371579 chr4:SNP:545 G A 167 off_target DP=26;DP4=0,16,0,9;AD=16,9;TYPE=SNP;DBXREF=dbSNP:rs13148498,g1000:0.275759; 4 79372930 chr4:SNP:546 C T 206 . DP=20;DP4=7,2,7,4;AD=9,11;TYPE=SNP;DBXREF=dbSNP:rs753752,g1000:0.579473,esp5400:0.683011,ExAC:0.672,clinvar:rs753752|2,MutationTaster:0; 4 79373254 chr4:SNP:547 T C 519 off_target DP=40;DP4=17,0,22,1;AD=17,23;TYPE=SNP;DBXREF=dbSNP:rs753751,g1000:0.579473; 4 79385719 chr4:SNP:548 G A 688 . DP=99;DP4=24,40,13,22;AD=64,35;TYPE=SNP;DBXREF=dbSNP:rs6851427,g1000:0.297524,esp5400:0.304531,ExAC:0.365,clinvar:rs6851427|2,MutationTaster:1; 4 79387281 chr4:SNP:549 T G 190 low_coverage;off_target DP=11;DP4=3,0,8,0;AD=3,8;TYPE=SNP;DBXREF=dbSNP:rs12640944,g1000:0.297524; 4 79387464 chr4:SNP:550 A G 3135 . DP=122;DP4=1,0,66,54;AD=1,120;TYPE=SNP;DBXREF=dbSNP:rs7684722,g1000:0.967652,esp5400:0.968484,ExAC:0.99,clinvar:rs7684722|2,MutationTaster:1; 4 79387586 chr4:SNP:551 A G 520 . DP=51;DP4=3,23,4,21;AD=26,25;TYPE=SNP;DBXREF=dbSNP:rs34840208,g1000:0.313698,esp5400:0.210896,ExAC:0.294,MutationTaster:1; 4 79391020 chr4:SNP:552 C T 212 low_coverage;off_target DP=8;DP4=0,0,7,1;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs7681619,g1000:0.942692; 4 79391036 chr4:SNP:553 T C 292 low_coverage;off_target DP=11;DP4=0,0,10,1;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1496602,g1000:0.943091; 4 79391256 chr4:SNP:554 T C 696 off_target DP=27;DP4=0,0,5,22;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs7664505,g1000:0.95607,esp5400:0.954181,ExAC:0.985,clinvar:rs7664505|2; 4 79393269 chr4:SNP:555 T C 198 low_coverage;off_target DP=16;DP4=6,1,7,2;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs28566963,g1000:0.315895; 4 79400868 chr4:SNP:556 C T 181 low_coverage DP=13;DP4=0,5,0,8;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs11098194,g1000:0.291334,esp5400:0.30548,ExAC:0.358,clinvar:rs11098194|2,MutationTaster:1; 4 79403747 chr4:SNP:557 C A 130 off_target DP=21;DP4=0,14,0,7;AD=14,7;TYPE=SNP;DBXREF=dbSNP:rs924149,g1000:0.331669; 4 79409899 chr4:SNP:558 T C 328 low_coverage;off_target DP=12;DP4=0,0,12,0;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs1496604,g1000:0.790935; 4 79409997 chr4:SNP:559 T C 700 off_target DP=28;DP4=0,0,19,9;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs1496603,g1000:0.802516,esp5400:0.721212,ExAC:0.813; 4 79420787 chr4:SNP:560 C T 632 off_target DP=50;DP4=16,5,26,3;AD=21,29;TYPE=SNP;DBXREF=dbSNP:rs4975134,g1000:0.582069; 4 79420864 chr4:SNP:561 T C 1066 . DP=103;DP4=33,17,28,25;AD=50,53;TYPE=SNP;DBXREF=dbSNP:rs7677541,g1000:0.59385,esp5400:0.509846,ExAC:0.508,clinvar:rs7677541|2; 4 79420870 chr4:SNP:562 C G 988 . DP=108;DP4=36,23,25,24;AD=59,49;TYPE=SNP;DBXREF=dbSNP:rs7695038,g1000:0.591653,esp5400:0.477445,ExAC:0.507,clinvar:rs7695038|2; 4 79432256 chr4:SNP:563 A G 141 low_coverage;off_target DP=10;DP4=4,0,6,0;AD=4,6;TYPE=SNP;DBXREF=dbSNP:rs1027445,g1000:0.701877; 4 79432286 chr4:SNP:564 A C 208 low_coverage;off_target DP=11;DP4=2,0,9,0;AD=2,9;TYPE=SNP;DBXREF=dbSNP:rs11727770,g1000:0.485224; 4 79432455 chr4:SNP:565 A C 744 . DP=65;DP4=18,11,18,18;AD=29,36;TYPE=SNP;DBXREF=dbSNP:rs3749488,g1000:0.404553,esp5400:0.294463,ExAC:0.324,MutationTaster:1; 4 79440425 chr4:SNP:566 T C 741 off_target DP=66;DP4=15,16,14,21;AD=31,35;TYPE=SNP;DBXREF=dbSNP:rs2903471,g1000:0.699681; 4 79443774 chr4:SNP:567 T A 2805 off_target DP=103;DP4=0,0,53,50;AD=0,103;TYPE=SNP;DBXREF=dbSNP:rs931604,g1000:0.983626,esp5400:0.987113,ExAC:0.994; 4 79443850 chr4:SNP:568 G A 826 . DP=80;DP4=16,23,13,28;AD=39,41;TYPE=SNP;DBXREF=dbSNP:rs931606,g1000:0.510982,esp5400:0.535633,ExAC:0.519,clinvar:rs931606|2,MutationTaster:1; 4 79444029 chr4:SNP:569 G A 440 off_target DP=55;DP4=14,18,10,13;AD=32,23;TYPE=SNP;DBXREF=dbSNP:rs1496598,g1000:0.510982; 4 79455714 chr4:SNP:570 C G 423 . DP=39;DP4=9,9,7,13;AD=18,20;TYPE=SNP;DBXREF=dbSNP:rs4975070,g1000:0.514976,esp5400:0.404024,ExAC:0.488,clinvar:rs4975070|2,MutationTaster:1; 4 79455733 chr4:SNP:571 C T 405 . DP=36;DP4=9,8,9,10;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs4975139,g1000:0.514976,esp5400:0.403913,ExAC:0.488,clinvar:rs4975139|2,MutationTaster:1; 4 79455858 chr4:SNP:572 T A 292 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4975140,g1000:0.934505; 4 79808400 chr4:SNP:573 A G 937 . DP=89;DP4=19,25,19,26;AD=44,45;TYPE=SNP;DBXREF=dbSNP:rs200263125,g1000:0.000199681,esp5400:0.000919,ExAC:0.0009681,MutationTaster:1; 4 80828668 chr4:SNP:574 A T 180 low_coverage;off_target DP=18;DP4=3,5,3,7;AD=8,10;TYPE=SNP;DBXREF=dbSNP:rs10027070,g1000:0.251997,esp5400:0.317375,ExAC:0.375; 4 80828740 chr4:SNP:575 T A 102 low_coverage;off_target DP=11;DP4=2,4,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs6819294,g1000:0.485024; 4 80898808 chr4:SNP:576 C T 190 . DP=25;DP4=7,9,4,5;AD=16,9;TYPE=SNP;DBXREF=dbSNP:rs35798108,g1000:0.0445288,esp5400:0.07638,ExAC:0.052; 4 80905851 chr4:SNP:577 A C 110 low_coverage;off_target DP=19;DP4=10,3,5,1;AD=13,6;TYPE=SNP;DBXREF=dbSNP:rs28688624,g1000:0.304712; 4 80905990 chr4:SNP:578 C G 533 . DP=21;DP4=0,0,6,14;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs12647691,g1000:0.802716,esp5400:0.70797,ExAC:0.767,MutationTaster:1; 4 80905991 chr4:SNP:579 G T 188 low_coverage DP=17;DP4=3,5,2,7;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs72653288,g1000:0.0461262,ExAC:0.071; 4 80939979 chr4:SNP:580 C T 386 off_target DP=26;DP4=8,1,12,5;AD=9,17;TYPE=SNP;DBXREF=dbSNP:rs4336166,g1000:0.292133; 4 80975372 chr4:SNP:581 A T 1039 off_target DP=37;DP4=0,0,23,14;AD=0,37;TYPE=SNP;DBXREF=dbSNP:rs10745242,g1000:0.696885,esp5400:0.608292; 4 80976420 chr4:SNP:582 G T 303 off_target DP=35;DP4=6,14,4,11;AD=20,15;TYPE=SNP;DBXREF=dbSNP:rs11730210,g1000:0.35643,esp5400:0.423931,ExAC:0.365; 4 80977078 chr4:SNP:583 T G 441 . DP=20;DP4=1,1,13,5;AD=2,18;TYPE=SNP;DBXREF=dbSNP:rs4594664,g1000:0.697284,esp5400:0.591102,ExAC:0.626; 4 80993382 chr4:SNP:584 G C 206 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs6818557,g1000:0.651957; 4 84189012 chr4:INDEL:31 GTTTTTTT GTTTTTTTT 220 off_target DP=34;DP4=0,5,0,29;AD=5,29;TYPE=INDEL;DBXREF=dbSNP:rs11448409,g1000:0.773762; 4 84190749 chr4:SNP:585 A G 355 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6535453,g1000:0.778355; 4 84190901 chr4:SNP:586 T C 949 off_target DP=38;DP4=0,0,21,17;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs6852861,g1000:0.659744; 4 84191031 chr4:SNP:587 A G 1987 . DP=75;DP4=0,0,40,35;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs6535454,g1000:0.778155,esp5400:0.739878,ExAC:0.734,clinvar:rs6535454|255; 4 84193366 chr4:SNP:588 C T 1061 off_target DP=40;DP4=0,0,13,27;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs6841889,g1000:0.730631,esp5400:0.684283,ExAC:0.689; 4 84205618 chr4:SNP:589 A C 266 low_coverage;off_target DP=10;DP4=0,0,7,3;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs13113787,g1000:0.894968,esp5400:0.896151,ExAC:0.921; 4 84205872 chr4:SNP:590 C A 1030 . DP=40;DP4=0,0,29,11;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs6818847,g1000:0.64976,esp5400:0.691671,ExAC:0.614,clinvar:rs6818847|255,MutationTaster:0; 4 84206004 chr4:SNP:591 T A 1100 . DP=92;DP4=20,22,20,30;AD=42,50;TYPE=SNP;DBXREF=dbSNP:rs112033303,g1000:0.00998403,esp5400:0.016347,ExAC:0.014,clinvar:rs112033303|255,MutationTaster:1; 4 84347363 chr4:SNP:592 A G 245 off_target DP=21;DP4=0,10,0,11;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs4693624,g1000:0.403355; 4 84347423 chr4:SNP:593 C T 162 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs1565908,g1000:0.51857; 4 84351153 chr4:SNP:594 G A 140 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs4235062,g1000:0.668331; 4 84352750 chr4:SNP:595 T C 285 low_coverage;off_target DP=18;DP4=6,0,11,1;AD=6,12;TYPE=SNP;DBXREF=dbSNP:rs12645412,g1000:0.404952; 4 84362443 chr4:SNP:596 T G 237 off_target DP=36;DP4=15,9,6,6;AD=24,12;TYPE=SNP;DBXREF=dbSNP:rs4693088,g1000:0.514377,esp5400:0.541659,ExAC:0.457; 4 84364751 chr4:SNP:597 A G 222 . DP=36;DP4=14,9,5,8;AD=23,13;TYPE=SNP;DBXREF=dbSNP:rs7665103,g1000:0.507788,esp5400:0.418109,ExAC:0.453; 4 84364808 chr4:SNP:598 T C 187 off_target DP=28;DP4=4,12,1,9;AD=16,10;TYPE=SNP;DBXREF=dbSNP:rs6535473,g1000:0.516374,esp5400:0.432811,ExAC:0.495; 4 84367050 chr4:SNP:599 G A 148 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs11099599,g1000:0.518171; 4 84367286 chr4:SNP:600 G A 1021 off_target DP=115;DP4=25,39,12,39;AD=64,51;TYPE=SNP;DBXREF=dbSNP:rs11099600,g1000:0.560703,esp5400:0.483268,ExAC:0.531; 4 84368225 chr4:INDEL:32 GCATTGTGGCCAATGCCTGTAATCC G 271 off_target DP=72;DP4=10,47,2,13;AD=57,15;TYPE=INDEL;DBXREF=dbSNP:rs11272773,g1000:0.517772; 4 84370091 chr4:SNP:601 A G 591 . DP=46;DP4=7,12,9,18;AD=19,27;TYPE=SNP;DBXREF=dbSNP:rs13141136,g1000:0.414537,esp5400:0.318571,ExAC:0.428; 4 84374480 chr4:SNP:602 C T 477 . DP=39;DP4=15,2,17,5;AD=17,22;TYPE=SNP;DBXREF=dbSNP:rs1494961,g1000:0.664537,esp5400:0.592303,ExAC:0.562,MutationTaster:0; 4 84376743 chr4:SNP:603 A T 1485 . DP=56;DP4=0,0,32,24;AD=0,56;TYPE=SNP;DBXREF=dbSNP:rs6831595,g1000:1,esp5400:0.999907,ExAC:1,MutationTaster:0; 4 85612737 chr4:SNP:604 A G 696 off_target DP=27;DP4=0,0,22,5;AD=0,27;TYPE=SNP;DBXREF=dbSNP:rs3747680,g1000:0.342652,esp5400:0.338632,ExAC:0.312; 4 85625701 chr4:SNP:605 A G 533 off_target DP=21;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1838039,g1000:0.775359; 4 85626818 chr4:SNP:606 A G 533 off_target DP=21;DP4=0,0,0,20;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2218323,g1000:0.558506; 4 85634488 chr4:SNP:607 T C 809 off_target DP=33;DP4=0,1,5,27;AD=1,32;TYPE=SNP;DBXREF=dbSNP:rs13108722,g1000:0.266174; 4 85647941 chr4:INDEL:33 TAAAAAAAAAA TAAAAAAAAAAA 188 homopolymer_region;off_target DP=35;DP4=2,0,24,6;AD=2,30;TYPE=INDEL;DBXREF=dbSNP:rs71670880,g1000:0.266374; 4 85656350 chr4:SNP:608 T C 643 off_target DP=32;DP4=1,1,10,19;AD=2,29;TYPE=SNP;DBXREF=dbSNP:rs6838727,g1000:0.265775; 4 85699579 chr4:SNP:609 A G 481 off_target DP=21;DP4=1,0,17,2;AD=1,19;TYPE=SNP;DBXREF=dbSNP:rs12502409,g1000:0.272364; 4 85710824 chr4:SNP:610 C A 635 off_target DP=27;DP4=1,0,22,4;AD=1,26;TYPE=SNP;DBXREF=dbSNP:rs13137042; 4 85718948 chr4:SNP:611 A T 400 low_coverage;off_target DP=17;DP4=1,0,16,0;AD=1,16;TYPE=SNP;DBXREF=dbSNP:rs2170935,g1000:0.469449; 4 85762385 chr4:SNP:612 T C 887 . DP=35;DP4=0,1,11,23;AD=1,34;TYPE=SNP;DBXREF=dbSNP:rs2046402,g1000:0.442692,esp5400:0.419223,ExAC:0.398,MutationTaster:1; 4 86643155 chr4:SNP:613 A C 281 off_target DP=24;DP4=2,9,3,10;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs17010697,g1000:0.286741,esp5400:0.20106,ExAC:0.237; 4 86863166 chr4:SNP:614 C T 178 low_coverage;off_target DP=18;DP4=7,2,5,4;AD=9,9;TYPE=SNP;DBXREF=dbSNP:rs346508,g1000:0.0826677; 4 87024409 chr4:SNP:615 T C 626 off_target DP=79;DP4=25,20,19,15;AD=45,34;TYPE=SNP;DBXREF=dbSNP:rs28529458,g1000:0.59345,esp5400:0.532906,ExAC:0.657; 4 87622624 chr4:SNP:616 G A 1268 . DP=83;DP4=11,16,19,37;AD=27,56;TYPE=SNP;DBXREF=dbSNP:rs61730646,g1000:0.00858626,esp5400:0.007127,ExAC:0.012,MutationTaster:0; 4 87684031 chr4:SNP:617 A G 1187 . DP=106;DP4=29,19,40,18;AD=48,58;TYPE=SNP;DBXREF=dbSNP:rs710832,g1000:0.710863,esp5400:0.770549,ExAC:0.711; 4 87684148 chr4:SNP:618 G T 1278 . DP=90;DP4=13,18,30,29;AD=31,59;TYPE=SNP;DBXREF=dbSNP:rs201633051,g1000:0.00139776,esp5400:0.003465,ExAC:0.003831,MutationTaster:1; 4 87694163 chr4:SNP:619 G A 478 off_target DP=54;DP4=6,25,3,20;AD=31,23;TYPE=SNP;DBXREF=dbSNP:rs193094231,g1000:0.00139776,esp5400:0.00397; 4 88533163 chr4:INDEL:34 TTGTGTGTG T 208 low_coverage;off_target DP=10;DP4=1,0,8,0;AD=1,8;TYPE=INDEL;DBXREF=dbSNP:rs36228864,g1000:0.353235; 4 88533441 chr4:SNP:620 T C 410 off_target DP=38;DP4=10,8,8,12;AD=18,20;TYPE=SNP;DBXREF=dbSNP:rs13131929,g1000:0.471446,esp5400:0.428245,ExAC:0.512,clinvar:rs13131929|2; 4 88533540 chr4:SNP:621 A T 455 . DP=49;DP4=16,10,15,8;AD=26,23;TYPE=SNP;DBXREF=dbSNP:rs36094464,g1000:0.136781,esp5400:0.143045,ExAC:0.09,clinvar:rs36094464|5|3,MutationTaster:0; 4 88534235 chr4:SNP:622 A G 10000 . DP=147;DP4=0,0,74,73;AD=0,147;TYPE=SNP;DBXREF=dbSNP:rs2736982,g1000:0.674321,esp5400:0.647023,ExAC:0.628,clinvar:rs2736982|2; 4 88577573 chr4:SNP:623 A G 464 low_coverage;off_target DP=18;DP4=0,0,14,4;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs2615480,g1000:0.828874,esp5400:0.764688; 4 88577754 chr4:SNP:624 A G 704 off_target DP=69;DP4=18,18,14,19;AD=36,33;TYPE=SNP;DBXREF=dbSNP:rs4693851,g1000:0.162939,esp5400:0.182746; 4 88578310 chr4:SNP:625 A G 769 off_target DP=32;DP4=0,1,2,28;AD=1,30;TYPE=SNP;DBXREF=dbSNP:rs2615479,g1000:0.828874; 4 88583135 chr4:SNP:626 A T 363 . DP=21;DP4=6,0,13,2;AD=6,15;TYPE=SNP;DBXREF=dbSNP:rs10019009,g1000:0.288938,esp5400:0.277189,ExAC:0.281,MutationTaster:0.182; 4 88732874 chr4:SNP:627 A G 169 low_coverage DP=13;DP4=4,1,5,3;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs17013182,g1000:0.0527157,esp5400:0.01478,ExAC:0.032,MutationTaster:0.308; 4 88929173 chr4:INDEL:35 CGAG C 206 low_variant_fraction DP=102;DP4=44,44,7,6;AD=88,13;TYPE=INDEL;DBXREF=dbSNP:rs750077647,ExAC:0.024,clinvar:rs750077647|2; 4 88929305 chr4:SNP:628 G A 252 . DP=36;DP4=6,17,1,12;AD=23,13;TYPE=SNP;DBXREF=dbSNP:rs2728118,g1000:0.114417,esp5400:0.060791,ExAC:0.053,clinvar:rs2728118|2; 4 88957562 chr4:SNP:629 T C 762 off_target DP=60;DP4=2,23,8,27;AD=25,35;TYPE=SNP;DBXREF=dbSNP:rs17786456,g1000:0.143371; 4 88959381 chr4:SNP:630 G A 541 off_target DP=21;DP4=0,0,19,2;AD=0,21;TYPE=SNP;DBXREF=dbSNP:rs2725221,g1000:0.696286,esp5400:0.662484,ExAC:0.604; 4 88973427 chr4:SNP:631 A G 134 low_coverage;off_target DP=14;DP4=0,8,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs2725210,g1000:0.421725; 4 89015857 chr4:SNP:632 C T 433 off_target DP=39;DP4=5,13,8,13;AD=18,21;TYPE=SNP;DBXREF=dbSNP:rs2231164,g1000:0.571885,esp5400:0.680796,ExAC:0.752; 4 89016782 chr4:SNP:633 A G 2410 off_target DP=91;DP4=0,0,39,52;AD=0,91;TYPE=SNP;DBXREF=dbSNP:rs2231162,g1000:0.758187,esp5400:0.82441,ExAC:0.884; 4 89020427 chr4:SNP:634 C A 159 low_coverage;off_target DP=13;DP4=4,2,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2231156,g1000:0.100839,esp5400:0.069184,ExAC:0.1; 4 89022362 chr4:SNP:635 C T 1432 off_target DP=54;DP4=0,0,40,14;AD=0,54;TYPE=SNP;DBXREF=dbSNP:rs2231153,g1000:0.672324,esp5400:0.750046,ExAC:0.855; 4 89028478 chr4:SNP:636 T A 386 off_target DP=43;DP4=6,18,4,15;AD=24,19;TYPE=SNP;DBXREF=dbSNP:rs2231148,g1000:0.21885,esp5400:0.306192; 4 89060751 chr4:SNP:637 C T 225 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs2725253,g1000:0.964457; 4 89060777 chr4:SNP:638 G A 266 low_coverage;off_target DP=10;DP4=0,0,9,1;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs2622617,g1000:0.964457; 4 95129238 chr4:SNP:639 T C 372 low_coverage DP=14;DP4=0,0,14,0;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2276910,g1000:0.728235,ExAC:0.482; 4 95134165 chr4:SNP:640 C G 232 off_target DP=36;DP4=14,9,8,5;AD=23,13;TYPE=SNP;DBXREF=dbSNP:rs10433970,g1000:0.417532,ExAC:0.365; 4 95147553 chr4:SNP:641 C T 150 low_coverage;off_target DP=8;DP4=0,1,0,6;AD=1,6;TYPE=SNP;DBXREF=dbSNP:rs72665660; 4 95161996 chr4:SNP:642 C T 1008 off_target DP=38;DP4=0,0,23,15;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs2306803,g1000:0.335264; 4 95170839 chr4:SNP:643 G A 1544 . DP=60;DP4=0,0,24,36;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs11722476,g1000:0.461462,esp5400:0.337674,ExAC:0.456,MutationTaster:0.962; 4 95173779 chr4:SNP:644 T C 628 . DP=23;DP4=0,0,23,0;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs7439869,g1000:0.730631,esp5400:0.705203,ExAC:0.627,MutationTaster:0.031; 4 95186055 chr4:SNP:645 A G 1088 . DP=41;DP4=0,0,20,21;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs2306802,g1000:0.335264,esp5400:0.29124,ExAC:0.384; 4 95197520 chr4:SNP:646 C T 1637 . DP=60;DP4=0,0,46,14;AD=0,60;TYPE=SNP;DBXREF=dbSNP:rs6823404,g1000:0.557109,esp5400:0.505949,ExAC:0.589; 4 95199479 chr4:SNP:647 C G 425 low_coverage;off_target DP=17;DP4=0,0,13,4;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs35670996,g1000:0.479034; 4 95202492 chr4:SNP:648 G A 266 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs35361491,g1000:0.46885; 4 95206252 chr4:INDEL:36 TTATC T 998 off_target DP=44;DP4=2,4,9,29;AD=6,38;TYPE=INDEL;DBXREF=dbSNP:rs67631469,g1000:0.573482,ExAC:0.595; 4 95211610 chr4:SNP:649 T C 10000 . DP=197;DP4=0,0,58,138;AD=0,196;TYPE=SNP;DBXREF=dbSNP:rs8336,g1000:0.604233,ExAC:0.569; 4 95212185 chr4:SNP:650 A G 1352 . DP=51;DP4=0,0,45,6;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs8026,g1000:0.461661,ExAC:0.446; 4 95496882 chr4:SNP:651 C T 833 . DP=110;DP4=37,30,30,13;AD=67,43;TYPE=SNP;DBXREF=dbSNP:rs2452600,g1000:0.224641,esp5400:0.249303,ExAC:0.262,MutationTaster:1; 4 95503670 chr4:SNP:652 G T 281 low_coverage;off_target DP=10;DP4=0,0,10,0;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3857212,g1000:0.979832; 4 95503902 chr4:SNP:653 T C 262 off_target DP=31;DP4=14,4,10,3;AD=18,13;TYPE=SNP;DBXREF=dbSNP:rs5013417,g1000:0.39976,esp5400:0.329567,ExAC:0.457; 4 95505975 chr4:SNP:654 C T 195 low_coverage;off_target DP=17;DP4=8,0,7,2;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs12639887,g1000:0.400359; 4 95506214 chr4:SNP:655 G A 357 off_target DP=30;DP4=4,9,7,10;AD=13,17;TYPE=SNP;DBXREF=dbSNP:rs2172448,g1000:0.472843,esp5400:0.537979; 4 95529430 chr4:SNP:656 C T 683 off_target DP=25;DP4=0,0,0,25;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs10033359,g1000:0.976238; 4 95529444 chr4:SNP:657 C A 611 off_target DP=23;DP4=0,0,0,23;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs9307146,g1000:0.891973; 4 95531156 chr4:SNP:658 G A 225 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs9992701,g1000:0.916134; 4 95531417 chr4:SNP:659 A G 650 . DP=26;DP4=0,0,6,20;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs10017461,g1000:0.819888,ExAC:0.877; 4 95539267 chr4:SNP:660 G A 2858 . DP=108;DP4=0,0,55,53;AD=0,108;TYPE=SNP;DBXREF=dbSNP:rs966845,g1000:0.993411,esp5400:0.994516,ExAC:0.993,MutationTaster:0.04; 4 95561459 chr4:SNP:661 A G 1267 . DP=104;DP4=21,24,37,22;AD=45,59;TYPE=SNP;DBXREF=dbSNP:rs7690296,g1000:0.38758,esp5400:0.338818,ExAC:0.435,MutationTaster:0; 4 95575601 chr4:SNP:662 C T 660 . DP=86;DP4=28,23,19,16;AD=51,35;TYPE=SNP;DBXREF=dbSNP:rs2280003,g1000:0.265575,esp5400:0.305819,ExAC:0.303; 4 95578588 chr4:SNP:663 G A 1564 . DP=59;DP4=0,0,35,24;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs13107595,g1000:0.979633,esp5400:0.983547,ExAC:0.989,MutationTaster:1; 4 95585038 chr4:SNP:664 G A 122 low_coverage;off_target DP=15;DP4=8,1,6,0;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs56921499,g1000:0.539936; 4 96052127 chr4:SNP:665 C T 115 low_coverage;off_target DP=14;DP4=8,0,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs10020529,g1000:0.115016; 4 96073956 chr4:SNP:666 A T 1159 off_target DP=45;DP4=0,0,25,20;AD=0,45;TYPE=SNP;DBXREF=dbSNP:rs1365691,g1000:0.430911,esp5400:0.465049,ExAC:0.51; 4 96091250 chr4:SNP:667 G A 681 off_target DP=28;DP4=1,0,20,7;AD=1,27;TYPE=SNP;DBXREF=dbSNP:rs2241744,g1000:0.345248; 4 96091524 chr4:SNP:668 G A 1210 off_target DP=47;DP4=0,0,13,34;AD=0,47;TYPE=SNP;DBXREF=dbSNP:rs2241743,g1000:0.479233,esp5400:0.562372,ExAC:0.541; 4 96106322 chr4:SNP:669 A G 1929 . DP=75;DP4=0,0,38,37;AD=0,75;TYPE=SNP;DBXREF=dbSNP:rs2289043,g1000:0.494609,esp5400:0.524819,ExAC:0.64,MutationTaster:1; 4 96123981 chr4:SNP:670 C T 1458 . DP=55;DP4=0,0,28,27;AD=0,55;TYPE=SNP;DBXREF=dbSNP:rs3733212,g1000:0.584265,esp5400:0.700595,ExAC:0.621; 4 96127869 chr4:SNP:671 T G 2364 . DP=91;DP4=0,1,36,54;AD=1,90;TYPE=SNP;DBXREF=dbSNP:rs2276322,g1000:0.528554,esp5400:0.629392,ExAC:0.588; 4 96137512 chr4:SNP:672 T C 394 low_coverage;off_target DP=14;DP4=0,0,1,13;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs995062,g1000:0.454872; 4 96165920 chr4:SNP:673 G A 134 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs3733211,g1000:0.676318; 4 96166370 chr4:SNP:674 C T 178 off_target DP=24;DP4=2,13,1,8;AD=15,9;TYPE=SNP;DBXREF=dbSNP:rs76859481,g1000:0.0744808; 4 96256616 chr4:SNP:675 A G 1004 . DP=39;DP4=0,0,23,16;AD=0,39;TYPE=SNP;DBXREF=dbSNP:rs4699423,g1000:0.478634,esp5400:0.366772,ExAC:0.483; 4 96256673 chr4:SNP:676 G A 1082 . DP=42;DP4=0,0,28,14;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs1843018,g1000:0.810104,esp5400:0.757996,ExAC:0.823; 4 99802395 chr4:SNP:677 C T 228 low_coverage;off_target DP=14;DP4=0,4,2,8;AD=4,10;TYPE=SNP;DBXREF=dbSNP:rs11729285,g1000:0.613618; 4 99805854 chr4:SNP:678 A C 220 low_coverage;off_target DP=14;DP4=5,0,9,0;AD=5,9;TYPE=SNP;DBXREF=dbSNP:rs77077471,g1000:0.091254; 4 99808136 chr4:INDEL:37 CTTAAA C 235 low_coverage;off_target DP=18;DP4=8,0,8,2;AD=8,10;TYPE=INDEL;DBXREF=dbSNP:rs139066077,g1000:0.109225; 4 99808254 chr4:SNP:679 G A 427 . DP=41;DP4=6,14,10,11;AD=20,21;TYPE=SNP;DBXREF=dbSNP:rs62323192,g1000:0.109425,esp5400:0.202082,ExAC:0.206,MutationTaster:1; 4 99822905 chr4:SNP:680 T C 430 off_target DP=40;DP4=13,6,14,7;AD=19,21;TYPE=SNP;DBXREF=dbSNP:rs17570252,g1000:0.109625; 4 99850126 chr4:SNP:681 A G 368 . DP=35;DP4=9,9,8,9;AD=18,17;TYPE=SNP;DBXREF=dbSNP:rs11723037,g1000:0.614217,esp5400:0.541108,ExAC:0.419; 4 100045500 chr4:SNP:682 T G 500 off_target DP=20;DP4=0,0,13,7;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1042365,g1000:0.882987; 4 100045574 chr4:SNP:683 T C 876 off_target DP=34;DP4=0,0,20,14;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs1042364,g1000:0.882788,esp5400:0.773353,ExAC:0.784; 4 100045616 chr4:SNP:684 C T 1030 . DP=40;DP4=0,0,18,22;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs1126673,g1000:0.847244,esp5400:0.73107,ExAC:0.749,MutationTaster:0.001; 4 100045647 chr4:SNP:685 A G 618 off_target DP=24;DP4=0,0,12,12;AD=0,24;TYPE=SNP;DBXREF=dbSNP:rs2602894,g1000:0.882987,esp5400:0.773701,ExAC:0.773; 4 100047929 chr4:SNP:686 G A 242 off_target DP=25;DP4=3,10,3,9;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs10009145,g1000:0.281749,esp5400:0.337302,ExAC:0.39; 4 100048327 chr4:SNP:687 G A 451 low_coverage;off_target DP=17;DP4=0,0,14,3;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs9307234,g1000:0.964058,esp5400:0.957132,ExAC:0.965; 4 100048414 chr4:SNP:688 T C 1511 . DP=57;DP4=0,0,26,31;AD=0,57;TYPE=SNP;DBXREF=dbSNP:rs1126671,g1000:0.847045,esp5400:0.73192,ExAC:0.756,MutationTaster:0; 4 100048506 chr4:SNP:689 G A 335 low_coverage;off_target DP=13;DP4=0,0,6,7;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6836440,g1000:0.964058,esp5400:0.957799,ExAC:0.966; 4 100052555 chr4:SNP:690 G C 231 off_target DP=23;DP4=12,0,11,0;AD=12,11;TYPE=SNP;DBXREF=dbSNP:rs29001207,g1000:0.0195687; 4 100052733 chr4:SNP:691 C A 1617 . DP=61;DP4=0,0,23,38;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs1126670,g1000:0.847244,esp5400:0.732199,ExAC:0.756; 4 100062819 chr4:SNP:692 A G 1049 . DP=42;DP4=0,0,16,26;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs2032349,g1000:0.964058,esp5400:0.957706,ExAC:0.966; 4 100065509 chr4:SNP:693 T G 239 low_coverage;off_target DP=9;DP4=0,0,0,9;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs1800759,g1000:0.562101; 4 100235053 chr4:SNP:694 A G 442 . DP=109;DP4=50,31,15,13;AD=81,28;TYPE=SNP;DBXREF=dbSNP:rs1789882,g1000:0.829673,esp5400:0.806388,ExAC:0.816; 4 100239319 chr4:SNP:695 T C 531 . DP=20;DP4=0,0,9,11;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs1229984,g1000:0.841454,esp5400:0.962911,ExAC:0.906,clinvar:rs1229984|,MutationTaster:0.883; 4 100258054 chr4:SNP:696 C A 313 off_target DP=23;DP4=1,8,2,12;AD=9,14;TYPE=SNP;DBXREF=dbSNP:rs1693453,g1000:0.975439; 4 100266133 chr4:SNP:697 T C 1243 . DP=111;DP4=27,25,29,30;AD=52,59;TYPE=SNP;DBXREF=dbSNP:rs2241894,g1000:0.471645,esp5400:0.302287,ExAC:0.309; 4 100268131 chr4:SNP:698 C T 155 off_target DP=20;DP4=7,5,7,1;AD=12,8;TYPE=SNP;DBXREF=dbSNP:rs3762896,g1000:0.477436,esp5400:0.325339,ExAC:0.331; 4 100268190 chr4:SNP:699 A C 1019 . DP=40;DP4=0,1,22,17;AD=1,39;TYPE=SNP;DBXREF=dbSNP:rs283413,g1000:0.992812,esp5400:0.990885,ExAC:0.985,clinvar:rs283413|; 4 100341643 chr4:SNP:700 G A 245 off_target DP=21;DP4=8,2,7,4;AD=10,11;TYPE=SNP;DBXREF=dbSNP:rs1154460,g1000:0.422324,esp5400:0.461417,ExAC:0.447; 4 100356179 chr4:SNP:701 C T 267 . DP=48;DP4=23,10,12,3;AD=33,15;TYPE=SNP;DBXREF=dbSNP:rs1154469,g1000:0.248203,esp5400:0.27953,ExAC:0.185; 4 100356337 chr4:SNP:702 G A 1025 off_target DP=104;DP4=20,34,27,23;AD=54,50;TYPE=SNP;DBXREF=dbSNP:rs1154470,g1000:0.242013,esp5400:0.26306,ExAC:0.311; 4 100504566 chr4:SNP:703 G C 579 . DP=68;DP4=17,22,15,14;AD=39,29;TYPE=SNP;DBXREF=dbSNP:rs61733139,g1000:0.0365415,esp5400:0.053478,ExAC:0.04,clinvar:rs61733139|2,MutationTaster:0; 4 100504664 chr4:SNP:704 T C 341 . DP=23;DP4=1,7,7,8;AD=8,15;TYPE=SNP;DBXREF=dbSNP:rs3816873,g1000:0.2498,esp5400:0.266134,ExAC:0.249,clinvar:rs3816873|255|255,MutationTaster:0; 4 100510859 chr4:SNP:705 T C 1400 . DP=56;DP4=2,0,38,16;AD=2,54;TYPE=SNP;DBXREF=dbSNP:rs991811,g1000:0.544329,esp5400:0.497955,ExAC:0.403,clinvar:rs991811|255; 4 100515774 chr4:SNP:706 A G 140 low_coverage;off_target DP=9;DP4=3,0,6,0;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs2306984,g1000:0.24381; 4 100516022 chr4:SNP:707 C G 956 . DP=35;DP4=0,0,10,25;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2306985,g1000:0.542332,esp5400:0.494702,ExAC:0.402,clinvar:rs2306985|3,MutationTaster:1; 4 100518283 chr4:SNP:708 T C 464 . DP=46;DP4=15,8,13,10;AD=23,23;TYPE=SNP;DBXREF=dbSNP:rs17533489,g1000:0.0605032,esp5400:0.11359,ExAC:0.095,clinvar:rs17533489|3; 4 100521637 chr4:SNP:709 C T 257 off_target DP=29;DP4=7,9,11,2;AD=16,13;TYPE=SNP;DBXREF=dbSNP:rs17533517,g1000:0.0605032; 4 100532253 chr4:SNP:710 A T 310 off_target DP=37;DP4=15,7,7,8;AD=22,15;TYPE=SNP;DBXREF=dbSNP:rs2298747,g1000:0.212061,esp5400:0.143734,ExAC:0.16; 4 100532637 chr4:SNP:711 T C 650 off_target DP=70;DP4=12,26,7,25;AD=38,32;TYPE=SNP;DBXREF=dbSNP:rs745075,g1000:0.0605032,esp5400:0.113611,ExAC:0.095; 4 100542167 chr4:SNP:712 A T 137 low_coverage;off_target DP=13;DP4=6,0,7,0;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs1491244,g1000:0.0507188,esp5400:0.084435,ExAC:0.067; 4 102839008 chr4:SNP:713 T G 253 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs6812874,g1000:0.848043; 4 102839287 chr4:SNP:714 G A 966 . DP=97;DP4=31,19,20,27;AD=50,47;TYPE=SNP;DBXREF=dbSNP:rs3733197,g1000:0.226837,esp5400:0.29537,ExAC:0.303,MutationTaster:0; 4 102839362 chr4:SNP:715 A T 1626 off_target DP=68;DP4=0,0,22,43;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs3733198,g1000:0.923123,esp5400:0.972748,ExAC:0.905; 4 102942765 chr4:INDEL:38 T TTA 209 off_target DP=45;DP4=5,29,0,11;AD=34,11;TYPE=INDEL;DBXREF=dbSNP:rs139919861,g1000:0.175319,ExAC:0.201; 4 102965043 chr4:SNP:716 T C 1643 . DP=62;DP4=0,0,27,35;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs3113676,g1000:0.996805,esp5400:0.990889,ExAC:0.991,MutationTaster:0; 4 103458825 chr4:SNP:717 A G 246 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs230526,g1000:0.585064; 4 103458877 chr4:SNP:718 G A 246 low_coverage;off_target DP=9;DP4=0,0,9,0;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs230525,g1000:0.689896; 4 103458888 chr4:INDEL:39 TCA T 298 low_coverage;off_target DP=12;DP4=1,0,11,0;AD=1,11;TYPE=INDEL;DBXREF=dbSNP:rs3830689,g1000:0.585264; 4 103514658 chr4:SNP:719 T C 263 . DP=37;DP4=8,15,9,5;AD=23,14;TYPE=SNP;DBXREF=dbSNP:rs1609993,g1000:0.969848,esp5400:0.943112,ExAC:0.94; 4 103610535 chr4:INDEL:40 ATGTG A 261 low_coverage;off_target DP=19;DP4=8,0,11,0;AD=8,11;TYPE=INDEL;DBXREF=dbSNP:rs34188354; 4 103610872 chr4:SNP:720 A G 1570 off_target DP=61;DP4=0,0,24,37;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs227365,g1000:0.634585,esp5400:0.585953,ExAC:0.654,clinvar:rs227365|2; 4 103611845 chr4:SNP:721 C T 795 . DP=33;DP4=1,1,12,19;AD=2,31;TYPE=SNP;DBXREF=dbSNP:rs227368,g1000:0.376597,esp5400:0.383436,ExAC:0.442,MutationTaster:0; 4 104510766 chr4:SNP:722 G A 134 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs2765,g1000:0.550319; 4 107249358 chr4:SNP:723 A G 1391 . DP=132;DP4=44,21,46,21;AD=65,67;TYPE=SNP;DBXREF=dbSNP:rs2230255,g1000:0.0277556,esp5400:0.030861,ExAC:0.008246,MutationTaster:0; 4 107846927 chr4:SNP:724 G T 527 off_target DP=58;DP4=27,5,20,6;AD=32,26;TYPE=SNP;DBXREF=dbSNP:rs17037109,g1000:0.0213658,esp5400:0.041179,ExAC:0.027; 4 107956446 chr4:SNP:725 A G 279 off_target DP=30;DP4=12,4,12,2;AD=16,14;TYPE=SNP;DBXREF=dbSNP:rs73837553,g1000:0.0648962; 4 108931039 chr4:SNP:726 T C 929 . DP=35;DP4=0,0,15,20;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs4956145,g1000:0.86901,esp5400:0.847091,ExAC:0.915,clinvar:rs4956145|2,MutationTaster:0.999; 4 108935770 chr4:SNP:727 T C 235 low_coverage;off_target DP=15;DP4=3,1,7,4;AD=4,11;TYPE=SNP;DBXREF=dbSNP:rs7677408,esp5400:0.824224; 4 108935871 chr4:SNP:728 G A 301 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4956147,g1000:0.86901; 4 108944579 chr4:SNP:729 C T 309 low_coverage;off_target DP=12;DP4=0,0,10,2;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs4956032,g1000:0.86901,esp5400:0.847741,ExAC:0.915; 4 108944821 chr4:SNP:730 C T 515 off_target DP=20;DP4=0,0,5,15;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs4956033,g1000:0.86901; 4 108944846 chr4:SNP:731 A G 284 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs4956034,g1000:0.868411; 4 109664819 chr4:SNP:732 T C 284 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6533381,g1000:0.96905; 4 109745336 chr4:SNP:733 T G 670 . DP=72;DP4=21,17,17,17;AD=38,34;TYPE=SNP;DBXREF=dbSNP:rs7689008,g1000:0.310104,esp5400:0.351681,ExAC:0.328; 4 109762918 chr4:SNP:734 C A 599 off_target DP=60;DP4=8,23,11,18;AD=31,29;TYPE=SNP;DBXREF=dbSNP:rs11942576,g1000:0.672724,esp5400:0.605665,ExAC:0.658; 4 109766290 chr4:SNP:735 T G 1167 off_target DP=44;DP4=0,0,32,12;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs11098004,g1000:0.840056,esp5400:0.83859; 4 109767453 chr4:INDEL:41 C CA 414 off_target DP=29;DP4=1,7,6,14;AD=8,20;TYPE=INDEL;DBXREF=dbSNP:rs5860952,g1000:0.936102; 4 109767469 chr4:SNP:736 T C 341 off_target DP=27;DP4=1,9,5,11;AD=10,16;TYPE=SNP;DBXREF=dbSNP:rs115566592,g1000:0.019369; 4 109769899 chr4:SNP:737 C T 338 off_target DP=42;DP4=13,12,12,5;AD=25,17;TYPE=SNP;DBXREF=dbSNP:rs13135591,g1000:0.784744,esp5400:0.764625,ExAC:0.823; 4 109782004 chr4:SNP:738 T C 441 off_target DP=27;DP4=7,1,14,5;AD=8,19;TYPE=SNP;DBXREF=dbSNP:rs72668336,g1000:0.0505192,esp5400:0.124304; 4 109790319 chr4:SNP:739 G A 233 off_target DP=25;DP4=8,5,6,6;AD=13,12;TYPE=SNP;DBXREF=dbSNP:rs72668338,g1000:0.0479233,esp5400:0.106327,ExAC:0.1; 4 109790346 chr4:INDEL:42 C CAATA 162 off_target DP=27;DP4=2,1,1,7;AD=3,8;TYPE=INDEL;DBXREF=dbSNP:rs560647780,ExAC:0.007155; 4 109790346 chr4:INDEL:43 CAATA C 379 off_target DP=27;DP4=2,1,7,9;AD=3,16;TYPE=INDEL;DBXREF=dbSNP:rs72348233,ExAC:0.043; 4 109810988 chr4:SNP:740 A T 515 off_target DP=20;DP4=0,0,5,15;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs72668354,g1000:0.0940495; 4 109839098 chr4:SNP:741 C T 309 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs1025147,g1000:0.744409; 4 109841743 chr4:SNP:742 C T 1220 . DP=46;DP4=0,0,23,23;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs17596705,g1000:0.122604,esp5400:0.2091,ExAC:0.169; 4 109861557 chr4:SNP:743 A T 146 low_coverage;off_target DP=18;DP4=8,3,6,1;AD=11,7;TYPE=SNP;DBXREF=dbSNP:rs113808298,g1000:0.0289537; 4 109863370 chr4:SNP:744 C T 484 . DP=66;DP4=21,20,13,12;AD=41,25;TYPE=SNP;DBXREF=dbSNP:rs17531474,g1000:0.0479233,ExAC:0.072,MutationTaster:1; 4 109971378 chr4:SNP:745 T C 254 off_target DP=24;DP4=6,6,2,10;AD=12,12;TYPE=SNP;DBXREF=dbSNP:rs1863291,g1000:0.222843,esp5400:0.20064,ExAC:0.276; 4 110670807 chr4:SNP:746 G C 438 low_coverage;off_target DP=17;DP4=0,0,3,14;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs7441380,g1000:0.969449,esp5400:0.966344,ExAC:0.99; 4 110678819 chr4:INDEL:44 CA C 287 off_target DP=37;DP4=18,1,15,1;AD=19,16;TYPE=INDEL;DBXREF=dbSNP:rs5860990,g1000:0.312101; 4 110678925 chr4:SNP:747 T C 1801 . DP=70;DP4=0,0,28,42;AD=0,70;TYPE=SNP;DBXREF=dbSNP:rs11098044,g1000:0.966853,esp5400:0.965051,ExAC:0.989,MutationTaster:0; 4 110678979 chr4:INDEL:45 T TTTTAA 1679 off_target DP=78;DP4=12,0,9,56;AD=12,65;TYPE=INDEL;DBXREF=dbSNP:rs146158558,g1000:0.966653; 4 110679002 chr4:SNP:748 G T 1691 off_target DP=62;DP4=0,0,6,56;AD=0,62;TYPE=SNP;DBXREF=dbSNP:rs7437142,g1000:0.966853,esp5400:0.970182; 4 110681505 chr4:SNP:749 C T 401 . DP=38;DP4=10,10,12,6;AD=20,18;TYPE=SNP;DBXREF=dbSNP:rs2298749,g1000:0.312101,esp5400:0.295687,ExAC:0.284; 4 110681618 chr4:SNP:750 C T 743 off_target DP=28;DP4=0,0,14,14;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs4382037,g1000:0.966853; 4 110754499 chr4:SNP:751 T C 715 off_target DP=74;DP4=16,22,17,19;AD=38,36;TYPE=SNP;DBXREF=dbSNP:rs12513108,g1000:0.302316,esp5400:0.175962,ExAC:0.224; 4 110758499 chr4:INDEL:46 CT CTT 236 off_target DP=24;DP4=12,0,12,0;AD=12,12;TYPE=INDEL;DBXREF=dbSNP:rs146513161,g1000:0.142372; 4 110763930 chr4:SNP:752 C T 427 off_target DP=47;DP4=2,24,0,21;AD=26,21;TYPE=SNP;DBXREF=dbSNP:rs6842245,g1000:0.6252; 4 110765361 chr4:SNP:753 T G 2258 . DP=87;DP4=1,0,25,61;AD=1,86;TYPE=SNP;DBXREF=dbSNP:rs7681770,g1000:0.967652,esp5400:0.965142,ExAC:0.989; 4 110765372 chr4:SNP:754 A G 578 off_target DP=80;DP4=11,38,11,20;AD=49,31;TYPE=SNP;DBXREF=dbSNP:rs7657133,g1000:0.674521,esp5400:0.795501,ExAC:0.768; 4 110765489 chr4:SNP:755 G A 195 low_coverage;off_target DP=17;DP4=0,8,0,9;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs80108392,g1000:0.0491214; 4 110765496 chr4:SNP:756 T C 209 low_coverage;off_target DP=17;DP4=0,8,0,9;AD=8,9;TYPE=SNP;DBXREF=dbSNP:rs6839680,g1000:0.143371; 4 110861927 chr4:SNP:757 G A 255 low_coverage;off_target DP=11;DP4=1,0,10,0;AD=1,10;TYPE=SNP;DBXREF=dbSNP:rs10029654,g1000:0.434305; 4 110862363 chr4:SNP:758 C T 664 off_target DP=65;DP4=10,23,10,22;AD=33,32;TYPE=SNP;DBXREF=dbSNP:rs11568886,g1000:0.0972444; 4 110865316 chr4:SNP:759 G A 306 off_target DP=22;DP4=0,8,0,14;AD=8,14;TYPE=SNP;DBXREF=dbSNP:rs11568901,g1000:0.077476; 4 110865378 chr4:SNP:760 G T 298 low_coverage;off_target DP=13;DP4=0,1,0,12;AD=1,12;TYPE=SNP;DBXREF=dbSNP:rs11098056,g1000:0.435304; 4 110866178 chr4:SNP:761 A C 315 low_coverage;off_target DP=13;DP4=0,0,13,0;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs4698755,g1000:0.435304,esp5400:0.384158,ExAC:0.369; 4 110866442 chr4:SNP:762 G A 1114 off_target DP=42;DP4=0,0,14,28;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs4698756,g1000:0.435304,esp5400:0.385945,ExAC:0.376; 4 110882980 chr4:SNP:763 G T 282 off_target DP=34;DP4=10,9,8,7;AD=19,15;TYPE=SNP;DBXREF=dbSNP:rs11568941,g1000:0.0764776,esp5400:0.000558,ExAC:0.037; 4 110890357 chr4:SNP:764 G C 101 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs187623300,g1000:0.000199681; 4 110895847 chr4:SNP:765 C A 354 off_target DP=27;DP4=7,4,11,5;AD=11,16;TYPE=SNP;DBXREF=dbSNP:rs11568990,g1000:0.086262,esp5400:0.009202,ExAC:0.042; 4 110901147 chr4:SNP:766 A G 470 . DP=50;DP4=10,17,16,7;AD=27,23;TYPE=SNP;DBXREF=dbSNP:rs2302135,g1000:0.10603,esp5400:0.030024,ExAC:0.048; 4 110901198 chr4:SNP:767 G A 1724 . DP=67;DP4=0,0,24,43;AD=0,67;TYPE=SNP;DBXREF=dbSNP:rs2237051,g1000:0.617812,esp5400:0.527236,ExAC:0.466,MutationTaster:0; 4 110904448 chr4:SNP:768 C T 523 off_target DP=22;DP4=2,0,19,1;AD=2,20;TYPE=SNP;DBXREF=dbSNP:rs6824594,g1000:0.617412; 4 110904502 chr4:SNP:769 G A 538 off_target DP=54;DP4=22,6,23,3;AD=28,26;TYPE=SNP;DBXREF=dbSNP:rs6825106,g1000:0.379792; 4 110914427 chr4:SNP:770 A T 902 . DP=34;DP4=0,0,22,12;AD=0,34;TYPE=SNP;DBXREF=dbSNP:rs4698803,g1000:0.920527,esp5400:0.85118,ExAC:0.841,MutationTaster:0; 4 110925492 chr4:SNP:771 C A 134 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs3733626,g1000:0.414936; 4 110932389 chr4:INDEL:47 GCCCC GCCCCC 101 . DP=47;DP4=17,7,13,7;AD=24,20;TYPE=INDEL;DBXREF=dbSNP:rs79786166,g1000:0.0866613,ExAC:0.041; 4 114254454 chr4:SNP:772 A G 272 off_target DP=33;DP4=2,17,0,14;AD=19,14;TYPE=SNP;DBXREF=dbSNP:rs77110722; 4 114257201 chr4:SNP:773 C T 266 . DP=34;DP4=5,16,4,9;AD=21,13;TYPE=SNP;DBXREF=dbSNP:rs3736575,g1000:0.260383,esp5400:0.255903,ExAC:0.145,clinvar:rs3736575|2|2,MutationTaster:1; 4 114260492 chr4:SNP:774 G T 240 off_target DP=37;DP4=7,17,6,7;AD=24,13;TYPE=SNP;DBXREF=dbSNP:rs2272231,g1000:0.228634,esp5400:0.223648,ExAC:0.138,clinvar:rs2272231|2; 4 114260538 chr4:SNP:775 C T 162 low_coverage;off_target DP=17;DP4=0,9,4,4;AD=9,8;TYPE=SNP;DBXREF=dbSNP:rs2272230,g1000:0.230032; 4 114262663 chr4:SNP:776 C G 320 off_target DP=24;DP4=10,0,14,0;AD=10,14;TYPE=SNP;DBXREF=dbSNP:rs36095372,g1000:0.0141773; 4 114267023 chr4:SNP:777 G A 2146 off_target DP=81;DP4=0,0,37,44;AD=0,81;TYPE=SNP;DBXREF=dbSNP:rs9968405,g1000:0.9998,esp5400:0.999721,ExAC:1; 4 114269552 chr4:SNP:778 G A 515 off_target DP=20;DP4=0,0,5,15;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2272235,g1000:0.284744; 4 114271605 chr4:SNP:779 A G 273 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs4834328,g1000:0.0517173; 4 114275243 chr4:SNP:780 C T 2013 . DP=76;DP4=0,0,47,29;AD=0,76;TYPE=SNP;DBXREF=dbSNP:rs33966911,g1000:0.0389377,esp5400:0.082171,ExAC:0.08,clinvar:rs33966911|2|2; 4 114276880 chr4:SNP:781 T C 2225 . DP=84;DP4=0,0,44,40;AD=0,84;TYPE=SNP;DBXREF=dbSNP:rs28377576,g1000:0.0920527,esp5400:0.143056,ExAC:0.098,clinvar:rs28377576|3|2|2,MutationTaster:0; 4 114276884 chr4:SNP:782 A G 2189 . DP=86;DP4=1,1,41,43;AD=2,84;TYPE=SNP;DBXREF=dbSNP:rs3733615,g1000:0.284944,esp5400:0.299405,ExAC:0.19,clinvar:rs3733615|2|2; 4 114279422 chr4:SNP:783 A G 929 . DP=35;DP4=0,0,5,30;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs10013743,g1000:0.0920527,esp5400:0.142685,ExAC:0.098,clinvar:rs10013743|2|2; 4 114284645 chr4:SNP:784 C T 465 low_coverage;off_target DP=19;DP4=0,1,4,14;AD=1,18;TYPE=SNP;DBXREF=dbSNP:rs35728190,g1000:0.0756789,esp5400:0.120561,ExAC:0.092,clinvar:rs35728190|2; 4 114294308 chr4:SNP:785 T C 2258 . DP=87;DP4=1,0,42,44;AD=1,86;TYPE=SNP;DBXREF=dbSNP:rs2293324,g1000:0.313299,esp5400:0.325339,ExAC:0.197,clinvar:rs2293324|2|2,MutationTaster:1; 4 119203221 chr4:SNP:786 C T 853 . DP=74;DP4=20,14,27,12;AD=34,39;TYPE=SNP;DBXREF=dbSNP:rs17594503,g1000:0.0255591,esp5400:0.046756,ExAC:0.044,clinvar:rs17594503|3,MutationTaster:0; 4 119219909 chr4:SNP:787 C A 1039 . DP=103;DP4=34,20,33,16;AD=54,49;TYPE=SNP;DBXREF=dbSNP:rs28661939,g1000:0.124601,esp5400:0.139617,ExAC:0.148,clinvar:rs28661939|3,MutationTaster:0.059; 4 119237348 chr4:SNP:788 T C 1654 . DP=66;DP4=0,0,35,30;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs2292597,g1000:0.545327,esp5400:0.518777,ExAC:0.554,clinvar:rs2292597|3; 4 119239788 chr4:SNP:789 A G 204 off_target DP=27;DP4=1,16,0,10;AD=17,10;TYPE=SNP;DBXREF=dbSNP:rs972813,g1000:0.349241; 4 119239900 chr4:SNP:790 C A 319 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs705838,g1000:0.804912; 4 119273712 chr4:SNP:791 C G 219 low_coverage DP=16;DP4=4,2,6,4;AD=6,10;TYPE=SNP;DBXREF=dbSNP:rs13119545,g1000:0.492212,esp5400:0.556302,ExAC:0.532,clinvar:rs13119545|2,MutationTaster:0; 4 120072233 chr4:SNP:792 G C 335 low_coverage;off_target DP=13;DP4=0,0,4,9;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs6828875,g1000:0.54353,esp5400:0.584155,ExAC:0.646; 4 120072238 chr4:SNP:793 A G 191 low_coverage;off_target DP=7;DP4=0,0,1,6;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs6828349,g1000:0.544129,esp5400:0.584527,ExAC:0.646; 4 120072275 chr4:SNP:794 G C 164 low_coverage;off_target DP=7;DP4=0,0,1,6;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs6829055,g1000:0.54353; 4 120079159 chr4:SNP:795 A G 743 off_target DP=28;DP4=0,0,14,14;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs11721566,g1000:0.546326,esp5400:0.585611,ExAC:0.649,clinvar:rs11721566|1|2; 4 120241849 chr4:SNP:796 A G 1016 . DP=42;DP4=0,0,24,18;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs4834770,g1000:0.585863,esp5400:0.565941,ExAC:0.568; 4 120241902 chr4:SNP:797 T C 1119 . DP=41;DP4=0,0,20,21;AD=0,41;TYPE=SNP;DBXREF=dbSNP:rs1799883,g1000:0.746605,esp5400:0.749024,ExAC:0.726,clinvar:rs1799883|2,MutationTaster:0; 4 120243336 chr4:INDEL:48 TA T 464 low_coverage;off_target DP=18;DP4=0,0,3,15;AD=0,18;TYPE=INDEL;DBXREF=dbSNP:rs5861422,g1000:0.586062; 4 120981214 chr4:SNP:798 T C 283 off_target DP=33;DP4=15,4,12,2;AD=19,14;TYPE=SNP;DBXREF=dbSNP:rs2908990,g1000:0.753994; 4 120982045 chr4:SNP:799 T C 589 . DP=56;DP4=18,9,19,10;AD=27,29;TYPE=SNP;DBXREF=dbSNP:rs61752609,g1000:0.0231629,esp5400:0.048801,ExAC:0.049; 4 120982135 chr4:SNP:800 G T 1359 . DP=95;DP4=19,15,31,30;AD=34,61;TYPE=SNP;DBXREF=dbSNP:rs61752610,g1000:0.0231629,esp5400:0.048624,ExAC:0.049; 4 120983259 chr4:SNP:801 T C 326 . DP=36;DP4=11,9,8,8;AD=20,16;TYPE=SNP;DBXREF=dbSNP:rs2908989,g1000:0.798123,esp5400:0.767615,ExAC:0.751; 4 121698199 chr4:SNP:802 G A 252 off_target DP=27;DP4=13,1,11,2;AD=14,13;TYPE=SNP;DBXREF=dbSNP:rs3804163,g1000:0.147165; 4 121702270 chr4:SNP:803 T C 188 low_coverage;off_target DP=13;DP4=5,0,7,1;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs3761721,g1000:0.136981,esp5400:0.196412,ExAC:0.211; 4 121706201 chr4:SNP:804 A G 624 . DP=81;DP4=25,24,17,15;AD=49,32;TYPE=SNP;DBXREF=dbSNP:rs12499000,g1000:0.13738,esp5400:0.197713,ExAC:0.211; 4 121720771 chr4:SNP:805 T C 118 off_target DP=20;DP4=13,1,5,1;AD=14,6;TYPE=SNP;DBXREF=dbSNP:rs1511309,g1000:0.273562,esp5400:0.273555,ExAC:0.283; 4 121720941 chr4:SNP:806 C G 509 off_target DP=38;DP4=3,12,5,18;AD=15,23;TYPE=SNP;DBXREF=dbSNP:rs4833676,g1000:0.229633,esp5400:0.23778,ExAC:0.269; 4 121720960 chr4:SNP:807 C G 308 off_target DP=29;DP4=0,14,2,13;AD=14,15;TYPE=SNP;DBXREF=dbSNP:rs4833677,g1000:0.229633,esp5400:0.259777; 4 121738049 chr4:SNP:808 T C 631 . DP=68;DP4=22,14,15,17;AD=36,32;TYPE=SNP;DBXREF=dbSNP:rs343192,g1000:0.27496,esp5400:0.278955,ExAC:0.291; 4 121738182 chr4:SNP:809 C T 223 off_target DP=26;DP4=2,13,2,9;AD=15,11;TYPE=SNP;DBXREF=dbSNP:rs237212,g1000:0.273762; 4 121739389 chr4:INDEL:49 CAAAA CAAA 121 off_target DP=21;DP4=5,1,13,2;AD=6,15;TYPE=INDEL;DBXREF=dbSNP:rs3840104,g1000:0.229633; 4 121739832 chr4:SNP:810 T G 143 low_coverage;off_target DP=17;DP4=0,10,0,7;AD=10,7;TYPE=SNP;DBXREF=dbSNP:rs343190,g1000:0.230032; 4 122590913 chr4:SNP:811 G A 225 off_target DP=22;DP4=1,10,3,8;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs41278075,g1000:0.167931,esp5400:0.172125,ExAC:0.229; 4 122592663 chr4:SNP:812 C T 474 off_target DP=40;DP4=12,6,13,9;AD=18,22;TYPE=SNP;DBXREF=dbSNP:rs2306419,g1000:0.0706869,esp5400:0.056423,ExAC:0.076; 4 122599249 chr4:SNP:813 G A 295 off_target DP=23;DP4=0,10,1,12;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs3756281,g1000:0.432308; 4 122599755 chr4:SNP:814 T C 189 low_coverage;off_target DP=19;DP4=3,7,1,8;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs3733649,g1000:0.432508; 4 122607686 chr4:SNP:815 T C 145 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs13120425,g1000:0.476238; 4 122617493 chr4:SNP:816 T C 357 off_target DP=30;DP4=12,1,17,0;AD=13,17;TYPE=SNP;DBXREF=dbSNP:rs2306413,g1000:0.381789; 4 122617631 chr4:SNP:817 C G 793 off_target DP=75;DP4=12,25,19,19;AD=37,38;TYPE=SNP;DBXREF=dbSNP:rs2306415,g1000:0.189297; 4 122617654 chr4:SNP:818 C T 749 off_target DP=72;DP4=13,23,14,22;AD=36,36;TYPE=SNP;DBXREF=dbSNP:rs72678604,g1000:0.18151,esp5400:0.155535; 4 122617688 chr4:SNP:819 T C 786 off_target DP=69;DP4=10,23,8,28;AD=33,36;TYPE=SNP;DBXREF=dbSNP:rs2306416,g1000:0.192093,esp5400:0.183212,ExAC:0.14; 4 122617718 chr4:SNP:820 G C 775 off_target DP=64;DP4=7,22,10,25;AD=29,35;TYPE=SNP;DBXREF=dbSNP:rs2306417,g1000:0.178115,esp5400:0.161089,ExAC:0.128; 4 122617745 chr4:SNP:821 G A 516 . DP=30;DP4=4,4,10,12;AD=8,22;TYPE=SNP;DBXREF=dbSNP:rs1131239,g1000:0.204473,esp5400:0.175683,ExAC:0.141; 4 122742217 chr4:SNP:822 T C 1664 . DP=61;DP4=0,0,26,35;AD=0,61;TYPE=SNP;DBXREF=dbSNP:rs769242,g1000:0.96865,esp5400:0.969593,ExAC:0.963,MutationTaster:0; 4 122743619 chr4:SNP:823 A G 175 . DP=30;DP4=10,9,8,1;AD=19,9;TYPE=SNP;DBXREF=dbSNP:rs200618568; 4 122825364 chr4:SNP:824 A C 293 off_target DP=29;DP4=15,0,14,0;AD=15,14;TYPE=SNP;DBXREF=dbSNP:rs3762839,g1000:0.196486; 4 122872901 chr4:SNP:825 A G 175 off_target DP=26;DP4=4,12,3,7;AD=16,10;TYPE=SNP;DBXREF=dbSNP:rs114185873,g1000:0.0315495; 4 123533820 chr4:SNP:826 C T 523 off_target DP=50;DP4=17,8,15,10;AD=25,25;TYPE=SNP;DBXREF=dbSNP:rs17886348,g1000:0.0311502,esp5400:0.049275,ExAC:0.053; 4 123533834 chr4:SNP:827 G A 971 off_target DP=84;DP4=28,9,30,17;AD=37,47;TYPE=SNP;DBXREF=dbSNP:rs17879298,g1000:0.0299521,esp5400:0.049637,ExAC:0.053; 4 123536963 chr4:SNP:828 G A 10000 . DP=123;DP4=0,0,34,89;AD=0,123;TYPE=SNP;DBXREF=dbSNP:rs4833837,g1000:0.840455,esp5400:0.766128,ExAC:0.743; 4 123664204 chr4:SNP:829 G A 2194 . DP=191;DP4=48,37,56,48;AD=85,104;TYPE=SNP;DBXREF=dbSNP:rs309370,g1000:0.50639,esp5400:0.415784,ExAC:0.414,clinvar:rs309370|2,MutationTaster:0; 4 123664427 chr4:SNP:830 G C 773 . DP=73;DP4=18,18,19,18;AD=36,37;TYPE=SNP;DBXREF=dbSNP:rs13135766,g1000:0.0946486,esp5400:0.173917,ExAC:0.173,clinvar:rs13135766|2; 4 123664446 chr4:SNP:831 G A 795 . DP=75;DP4=19,19,20,17;AD=38,37;TYPE=SNP;DBXREF=dbSNP:rs13135778,g1000:0.0926518,esp5400:0.171407,ExAC:0.17,clinvar:rs13135778|2,MutationTaster:0; 4 123664457 chr4:SNP:832 C T 752 . DP=81;DP4=25,19,23,13;AD=44,36;TYPE=SNP;DBXREF=dbSNP:rs13135445,g1000:0.121006,esp5400:0.206823,ExAC:0.187,clinvar:rs13135445|2; 4 123664919 chr4:SNP:833 A G 271 . DP=53;DP4=18,20,8,7;AD=38,15;TYPE=SNP;DBXREF=dbSNP:rs13102440,g1000:0.091853,esp5400:0.170199,ExAC:0.169,clinvar:rs13102440|2; 4 123748616 chr4:SNP:834 C G 625 off_target DP=53;DP4=9,14,15,15;AD=23,30;TYPE=SNP;DBXREF=dbSNP:rs2922979,g1000:0.440296; 4 123814308 chr4:SNP:835 C T 915 . DP=79;DP4=15,21,17,26;AD=36,43;TYPE=SNP;DBXREF=dbSNP:rs1048201,g1000:0.228834,esp5400:0.1372,ExAC:0.208,MutationTaster:1; 4 123838758 chr4:SNP:836 A G 2436 . DP=92;DP4=0,0,41,51;AD=0,92;TYPE=SNP;DBXREF=dbSNP:rs12648093,g1000:0.605631,esp5400:0.604764,ExAC:0.697,MutationTaster:0.41; 4 123843716 chr4:SNP:837 T C 2929 . DP=114;DP4=0,0,46,68;AD=0,114;TYPE=SNP;DBXREF=dbSNP:rs13134412,g1000:0.74361,esp5400:0.752706,ExAC:0.843; 4 140625323 chr4:SNP:838 A G 10000 off_target DP=140;DP4=0,0,46,94;AD=0,140;TYPE=SNP;DBXREF=dbSNP:rs925424,g1000:0.994808,esp5400:0.996003,ExAC:0.999; 4 141483471 chr4:SNP:839 T A 285 . DP=33;DP4=10,8,5,10;AD=18,15;TYPE=SNP;DBXREF=dbSNP:rs2270565,g1000:0.0720847,esp5400:0.06293,ExAC:0.087,MutationTaster:0.015; 4 144548871 chr4:SNP:840 G A 476 . DP=48;DP4=14,11,12,11;AD=25,23;TYPE=SNP;DBXREF=MutationTaster:1; 4 144618610 chr4:SNP:841 G C 1802 . DP=68;DP4=0,0,47,21;AD=0,68;TYPE=SNP;DBXREF=dbSNP:rs1034494,g1000:0.97504,esp5400:0.988868,ExAC:0.992,MutationTaster:0; 4 144797848 chr4:SNP:842 G T 413 off_target DP=24;DP4=5,1,16,2;AD=6,18;TYPE=SNP;DBXREF=dbSNP:rs6537203,g1000:0.280751; 4 144801522 chr4:SNP:843 C T 106 low_variant_fraction;off_target DP=31;DP4=24,1,6,0;AD=25,6;TYPE=SNP;DBXREF=dbSNP:rs200725864,esp5400:0.031895,ExAC:0.105; 4 144801662 chr4:SNP:844 C G 606 . DP=134;DP4=0,0,17,18;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs1132785,g1000:0.308906,ExAC:0.341,MutationTaster:0; 4 144801662 chr4:SNP:845 C T 2298 . DP=134;DP4=0,0,54,45;AD=0,99;TYPE=SNP;DBXREF=dbSNP:rs1132785,g1000:0.532947,esp5400:0.763574,ExAC:0.431,MutationTaster:0; 4 144801671 chr4:SNP:846 A C 537 . DP=138;DP4=51,55,15,17;AD=106,32;TYPE=SNP;DBXREF=dbSNP:rs146400730,esp5400:0.127929; 4 144801728 chr4:SNP:847 C T 103 low_variant_fraction;off_target DP=79;DP4=30,41,2,6;AD=71,8;TYPE=SNP;DBXREF=dbSNP:rs201075956; 4 144801779 chr4:SNP:848 G A 505 off_target DP=39;DP4=2,14,4,19;AD=16,23;TYPE=SNP;DBXREF=dbSNP:rs7677044,g1000:0.454473; 4 144801798 chr4:SNP:849 C G 121 low_coverage;off_target DP=18;DP4=0,12,0,6;AD=12,6;TYPE=SNP;DBXREF=dbSNP:rs2305066,g1000:0.164337; 4 144917514 chr4:SNP:850 A C 2040 off_target DP=77;DP4=0,0,32,45;AD=0,77;TYPE=SNP;DBXREF=dbSNP:rs1980037,g1000:0.959265,esp5400:0.977118; 4 144917616 chr4:SNP:851 T C 281 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs6537238,g1000:0.72504; 4 144918712 chr4:SNP:852 C G 902 . DP=68;DP4=18,10,27,13;AD=28,40;TYPE=SNP;DBXREF=dbSNP:rs1132783,g1000:0.176118,esp5400:0.175797,ExAC:0.218,MutationTaster:0; 4 144918867 chr4:SNP:853 A G 690 off_target DP=26;DP4=0,0,3,23;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs1473055,g1000:0.72504; 4 144918893 chr4:SNP:854 A G 492 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs4835126,g1000:0.726837; 4 144918900 chr4:SNP:855 G A 451 low_coverage;off_target DP=17;DP4=0,0,0,17;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs1849110,g1000:0.972244; 4 144922549 chr4:SNP:856 G A 299 off_target DP=31;DP4=3,14,3,11;AD=17,14;TYPE=SNP;DBXREF=dbSNP:rs6537239,g1000:0.320487; 4 145035788 chr4:SNP:857 G A 537 off_target DP=38;DP4=9,5,15,9;AD=14,24;TYPE=SNP;DBXREF=dbSNP:rs6857303,g1000:0.36881,esp5400:0.40569; 4 145037980 chr4:SNP:858 C G 1147 off_target DP=42;DP4=0,0,31,11;AD=0,42;TYPE=SNP;DBXREF=dbSNP:rs6824244,g1000:0.999401,esp5400:0.999163,ExAC:1; 4 145039659 chr4:SNP:859 G T 465 low_coverage;off_target DP=17;DP4=0,0,17,0;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs6835963,g1000:0.93151; 4 145040784 chr4:SNP:860 T C 367 off_target DP=31;DP4=5,9,10,7;AD=14,17;TYPE=SNP;DBXREF=dbSNP:rs62334651,g1000:0.402556; 4 145040962 chr4:SNP:861 C G 375 low_coverage;off_target DP=15;DP4=0,0,5,10;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs6857144,g1000:0.902955,esp5400:0.889849,ExAC:0.963; 4 145040963 chr4:SNP:862 A T 292 low_coverage;off_target DP=11;DP4=0,0,4,7;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6833563,g1000:0.902756,esp5400:0.891058,ExAC:0.963; 4 145041686 chr4:SNP:863 A G 773 . DP=30;DP4=0,0,23,7;AD=0,30;TYPE=SNP;DBXREF=dbSNP:rs4867,g1000:0.871406,esp5400:0.840633,ExAC:0.941; 4 145041708 chr4:SNP:864 T C 114 low_variant_fraction DP=39;DP4=22,10,6,1;AD=32,7;TYPE=SNP;DBXREF=dbSNP:rs7687256,g1000:0.206869,ExAC:0.019,MutationTaster:0; 4 145041720 chr4:SNP:865 A G 264 . DP=58;DP4=21,22,10,5;AD=43,15;TYPE=SNP;DBXREF=dbSNP:rs7682260,g1000:0.285144,esp5400:0.21136,ExAC:0.162,MutationTaster:0; 4 145041741 chr4:SNP:866 T G 1490 . DP=63;DP4=1,1,27,34;AD=2,61;TYPE=SNP;DBXREF=dbSNP:rs4449373,g1000:0.8752,esp5400:0.796411,MutationTaster:0.001; 4 145041750 chr4:SNP:867 A C 313 . DP=71;DP4=22,31,9,9;AD=53,18;TYPE=SNP;DBXREF=dbSNP:rs45468202,esp5400:0.248602,ExAC:0.359; 4 145061822 chr4:INDEL:50 CAAAAAAA CAAAAAA 105 off_target DP=78;DP4=19,27,10,22;AD=46,32;TYPE=INDEL;DBXREF=dbSNP:rs71590434,g1000:0.344848,ExAC:0.379; 4 145579907 chr4:SNP:868 G A 1299 off_target DP=49;DP4=0,0,38,11;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs6537301,g1000:0.599641,esp5400:0.555772,ExAC:0.561; 4 145627458 chr4:SNP:869 A G 212 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs3733424,g1000:0.573882; 4 145640154 chr4:SNP:870 C T 245 off_target DP=24;DP4=4,8,6,6;AD=12,12;TYPE=SNP;DBXREF=dbSNP:rs2276933,g1000:0.145168,esp5400:0.026796,ExAC:0.089; 4 146463966 chr4:SNP:871 T C 181 low_coverage;off_target DP=13;DP4=0,5,0,8;AD=5,8;TYPE=SNP;DBXREF=dbSNP:rs1497126,g1000:0.544129; 4 148457009 chr4:INDEL:51 T TTC 663 off_target DP=86;DP4=33,16,21,11;AD=49,32;TYPE=INDEL;DBXREF=dbSNP:rs71594223,g1000:0.344649; 4 148457326 chr4:SNP:872 T G 116 low_coverage;off_target DP=16;DP4=0,10,0,6;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs10305916,g1000:0.202276; 4 148460831 chr4:SNP:873 G A 168 low_coverage;off_target DP=15;DP4=7,0,8,0;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs6840375,g1000:0.384385; 4 148461037 chr4:SNP:874 T C 704 . DP=69;DP4=12,24,12,21;AD=36,33;TYPE=SNP;DBXREF=dbSNP:rs5333,g1000:0.384385,esp5400:0.351459,ExAC:0.285; 4 148461073 chr4:SNP:875 G A 464 . DP=49;DP4=6,21,4,18;AD=27,22;TYPE=SNP;DBXREF=dbSNP:rs5334,g1000:0.384185,esp5400:0.351552,ExAC:0.285; 4 148461378 chr4:SNP:876 G A 127 low_coverage;off_target DP=15;DP4=9,0,6,0;AD=9,6;TYPE=SNP;DBXREF=dbSNP:rs2292765,g1000:0.402756; 4 148463632 chr4:SNP:877 A G 523 . DP=52;DP4=15,11,14,12;AD=26,26;TYPE=SNP;DBXREF=dbSNP:rs141331809,g1000:0.00159744,esp5400:0.003346,ExAC:0.004151; 4 148463840 chr4:SNP:878 G C 202 low_coverage;off_target DP=15;DP4=1,5,1,8;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs5335,g1000:0.576278; 4 148560357 chr4:SNP:879 C T 319 low_coverage;off_target DP=12;DP4=0,0,0,12;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs2654935,g1000:1; 4 148589677 chr4:SNP:880 C T 956 off_target DP=35;DP4=0,0,25,10;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2718454,g1000:0.804912,esp5400:0.851618,ExAC:0.923; 4 148591769 chr4:SNP:881 G T 1673 off_target DP=65;DP4=0,0,42,23;AD=0,65;TYPE=SNP;DBXREF=dbSNP:rs2036502,g1000:0.979034,esp5400:0.97704,ExAC:0.994; 4 148591988 chr4:SNP:882 T C 242 off_target DP=22;DP4=0,11,0,11;AD=11,11;TYPE=SNP;DBXREF=dbSNP:rs114482991,g1000:0.0129792; 4 148601481 chr4:SNP:883 G C 119 . DP=29;DP4=8,14,4,3;AD=22,7;TYPE=SNP;DBXREF=dbSNP:rs151270359,g1000:0.000798722,esp5400:0.000651,ExAC:0.0009637,MutationTaster:1; 4 149002667 chr4:SNP:884 G C 405 off_target DP=36;DP4=5,12,4,15;AD=17,19;TYPE=SNP;DBXREF=dbSNP:rs61763143,g1000:0.00379393,esp5400:0.011619,ExAC:0.013,clinvar:rs61763143|2; 4 149035449 chr4:SNP:885 T C 130 low_coverage;off_target DP=12;DP4=1,4,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs1879829,g1000:0.509185,esp5400:0.445343,ExAC:0.48; 4 149073555 chr4:SNP:886 C T 531 off_target DP=20;DP4=0,0,18,2;AD=0,20;TYPE=SNP;DBXREF=dbSNP:rs2272089,g1000:0.731629; 4 149116035 chr4:SNP:887 A G 1061 off_target DP=40;DP4=0,0,13,27;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs4835500,g1000:0.611222,esp5400:0.531727,ExAC:0.573; 4 149116159 chr4:SNP:888 T C 266 low_coverage;off_target DP=10;DP4=0,0,0,10;AD=0,10;TYPE=SNP;DBXREF=dbSNP:rs3910056,g1000:0.609026; 4 149356516 chr4:SNP:889 A G 2726 . DP=103;DP4=0,0,54,49;AD=0,103;TYPE=SNP;DBXREF=dbSNP:rs5525,g1000:0.891973,esp5400:0.899703,ExAC:0.882,clinvar:rs5525|2; 4 149357475 chr4:SNP:890 C T 2093 . DP=79;DP4=0,0,53,26;AD=0,79;TYPE=SNP;DBXREF=dbSNP:rs5522,g1000:0.891973,esp5400:0.899052,ExAC:0.881,clinvar:rs5522|2,MutationTaster:0; 4 153252061 chr4:SNP:891 A G 476 off_target DP=42;DP4=4,15,7,16;AD=19,23;TYPE=SNP;DBXREF=dbSNP:rs10033601,g1000:0.48123,esp5400:0.414187,ExAC:0.37; 4 153333100 chr4:SNP:892 T A 140 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs2292743,g1000:0.501198; 4 154624656 chr4:SNP:893 T C 923 . DP=75;DP4=18,13,20,24;AD=31,44;TYPE=SNP;DBXREF=dbSNP:rs3804099,g1000:0.414736,esp5400:0.496468,ExAC:0.411; 4 155489095 chr4:SNP:894 A G 106 low_coverage;off_target DP=11;DP4=0,6,0,5;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs2227412,g1000:0.138778; 4 155507590 chr4:SNP:895 T C 741 . DP=45;DP4=2,10,10,22;AD=12,32;TYPE=SNP;DBXREF=dbSNP:rs6050,g1000:0.327077,esp5400:0.28918,ExAC:0.287,clinvar:rs6050|255|2,MutationTaster:0; 4 155508627 chr4:SNP:896 G A 383 low_coverage;off_target DP=14;DP4=0,0,10,4;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs2070018,g1000:0.889976,esp5400:0.870422,ExAC:0.876; 4 155510065 chr4:SNP:897 T G 915 . DP=98;DP4=18,31,19,29;AD=49,48;TYPE=SNP;DBXREF=dbSNP:rs199554805,esp5400:0.000186,ExAC:0.0002389,MutationTaster:0.503; 4 155510224 chr4:SNP:898 A T 365 low_coverage;off_target DP=13;DP4=0,0,0,13;AD=0,13;TYPE=SNP;DBXREF=dbSNP:rs7656433,g1000:0.985423; 4 155511897 chr4:SNP:899 T C 142 low_coverage;off_target DP=11;DP4=0,5,0,6;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs2070011,g1000:0.642971,esp5400:0.640693; 4 155525970 chr4:SNP:900 G A 115 low_coverage;off_target DP=8;DP4=3,0,5,0;AD=3,5;TYPE=SNP;DBXREF=dbSNP:rs1049636,g1000:0.700879,esp5400:0.710727,ExAC:0.677; 4 156826166 chr4:SNP:901 C G 1061 off_target DP=40;DP4=0,0,29,11;AD=0,40;TYPE=SNP;DBXREF=dbSNP:rs2137778,g1000:0.975639,esp5400:0.973015; 4 156832841 chr4:SNP:902 C T 1201 off_target DP=44;DP4=0,0,9,35;AD=0,44;TYPE=SNP;DBXREF=dbSNP:rs12502494,g1000:0.723442; 4 156839462 chr4:SNP:903 C T 472 off_target DP=32;DP4=5,5,12,10;AD=10,22;TYPE=SNP;DBXREF=dbSNP:rs2292537,g1000:0.891573; 4 158041896 chr4:SNP:904 G A 345 off_target DP=34;DP4=3,14,3,14;AD=17,17;TYPE=SNP;DBXREF=dbSNP:rs3775724,g1000:0.402955; 4 158043559 chr4:SNP:905 C T 291 . DP=24;DP4=4,7,3,10;AD=11,13;TYPE=SNP;DBXREF=dbSNP:rs41280501,g1000:0.491214,esp5400:0.440881,ExAC:0.342; 4 158065038 chr4:SNP:906 T C 10000 . DP=151;DP4=0,0,82,69;AD=0,151;TYPE=SNP;DBXREF=dbSNP:rs12507409,g1000:0.979633,esp5400:0.978156,ExAC:0.994; 4 159601676 chr4:SNP:907 C T 1564 . DP=59;DP4=0,0,33,26;AD=0,59;TYPE=SNP;DBXREF=dbSNP:rs11559290,g1000:0.672724,esp5400:0.651543,ExAC:0.812,clinvar:rs11559290|2,MutationTaster:1; 4 159617019 chr4:SNP:908 C T 350 low_coverage;off_target DP=14;DP4=0,0,0,14;AD=0,14;TYPE=SNP;DBXREF=dbSNP:rs4263349,g1000:0.993411; 4 164247743 chr4:SNP:909 A C 526 off_target DP=56;DP4=5,26,3,22;AD=31,25;TYPE=SNP;DBXREF=dbSNP:rs5577,g1000:0.0273562,esp5400:0.013868,ExAC:0.024; 4 166254973 chr4:SNP:910 A G 105 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs2118496,g1000:0.517971; 4 166403574 chr4:SNP:911 A G 116 low_coverage;off_target DP=12;DP4=3,3,3,3;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs2289230,g1000:0.482029; 4 166408782 chr4:SNP:912 T G 390 off_target DP=37;DP4=6,13,5,13;AD=19,18;TYPE=SNP;DBXREF=dbSNP:rs3822062,g1000:0.469848; 4 166915853 chr4:SNP:913 G A 212 low_coverage;off_target DP=8;DP4=0,0,1,7;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs4691229,g1000:0.706669; 4 166929102 chr4:SNP:914 G A 172 . DP=27;DP4=8,10,4,5;AD=18,9;TYPE=SNP;DBXREF=dbSNP:rs17590218,g1000:0.0521166,esp5400:0.034021,ExAC:0.036; 4 166960363 chr4:SNP:915 G A 129 low_coverage;off_target DP=14;DP4=8,0,6,0;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs17590344,g1000:0.518371; 4 166978539 chr4:INDEL:52 CT C 154 off_target DP=22;DP4=0,13,0,9;AD=13,9;TYPE=INDEL;DBXREF=dbSNP:rs59089153; 4 166981044 chr4:SNP:916 G A 213 off_target DP=20;DP4=8,2,9,1;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs3756017,g1000:0.428115; 4 166981519 chr4:SNP:917 A G 145 low_coverage;off_target DP=16;DP4=0,9,0,7;AD=9,7;TYPE=SNP;DBXREF=dbSNP:rs28380606,g1000:0.429513; 4 166996347 chr4:SNP:918 A G 129 low_coverage;off_target DP=14;DP4=1,7,0,6;AD=8,6;TYPE=SNP;DBXREF=dbSNP:rs2292082,g1000:0.492612; 4 167012241 chr4:INDEL:53 GTTTTTTTTT GTTTTTTTT 140 low_coverage;off_target DP=19;DP4=0,0,15,4;AD=0,19;TYPE=INDEL;DBXREF=dbSNP:rs33952157,g1000:0.90635,ExAC:0.261; 4 167012249 chr4:SNP:919 T A 184 low_coverage;off_target DP=16;DP4=6,1,6,3;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs60017576,g1000:0.527556,ExAC:0.038; 4 167012250 chr4:SNP:920 T A 387 low_coverage;off_target DP=15;DP4=0,0,11,4;AD=0,15;TYPE=SNP;DBXREF=dbSNP:rs33986267,g1000:0.796526,esp5400:0.867021,ExAC:0.303; 4 167012381 chr4:SNP:921 G A 956 . DP=35;DP4=0,0,15,20;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2654492,g1000:0.90615,esp5400:0.897565,ExAC:0.951; 4 167012480 chr4:SNP:922 T C 465 low_coverage DP=17;DP4=0,0,2,15;AD=0,17;TYPE=SNP;DBXREF=dbSNP:rs2646914,g1000:0.969848,esp5400:0.970435,ExAC:0.992; 4 169604093 chr4:SNP:923 C A 135 off_target DP=28;DP4=8,12,8,0;AD=20,8;TYPE=SNP; 4 169799309 chr4:SNP:924 G C 128 . DP=21;DP4=2,11,8,0;AD=13,8;TYPE=SNP;DBXREF=dbSNP:rs863224384,clinvar:rs863224384|2; 4 169799448 chr4:SNP:925 A G 2647 . DP=100;DP4=0,0,34,66;AD=0,100;TYPE=SNP;DBXREF=dbSNP:rs62333013,g1000:0.478634,esp5400:0.601982,ExAC:0.54,clinvar:rs62333013|2,MutationTaster:0; 4 169812313 chr4:SNP:926 T C 284 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6827082,g1000:0.726837; 4 169835048 chr4:SNP:927 C G 1374 off_target DP=55;DP4=1,0,31,22;AD=1,53;TYPE=SNP;DBXREF=dbSNP:rs1532651,g1000:0.707069,esp5400:0.649284,ExAC:0.757; 4 169846255 chr4:SNP:928 T C 1245 off_target DP=50;DP4=0,0,35,14;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs3733656,g1000:0.714457,esp5400:0.663692,ExAC:0.76; 4 169846359 chr4:INDEL:54 GCT G 1256 off_target DP=56;DP4=4,3,21,27;AD=7,48;TYPE=INDEL;DBXREF=dbSNP:rs66895777,g1000:0.717851,ExAC:0.764,clinvar:rs536545858|2; 4 170354836 chr4:SNP:929 C T 1364 off_target DP=141;DP4=43,31,32,35;AD=74,67;TYPE=SNP;DBXREF=dbSNP:rs7680152,g1000:0.795327,esp5400:0.793636,ExAC:0.87,clinvar:rs7680152|2; 4 170354873 chr4:SNP:930 T C 1223 off_target DP=128;DP4=31,35,23,39;AD=66,62;TYPE=SNP;DBXREF=dbSNP:rs13139925,g1000:0.686502; 4 170398454 chr4:SNP:931 T C 709 . DP=67;DP4=8,23,14,22;AD=31,36;TYPE=SNP;DBXREF=dbSNP:rs34099167,g1000:0.105032,esp5400:0.101605,ExAC:0.089,MutationTaster:0.997; 4 170398717 chr4:SNP:932 C T 222 off_target DP=23;DP4=2,10,6,5;AD=12,11;TYPE=SNP;DBXREF=dbSNP:rs67794467,g1000:0.303315,esp5400:0.262781; 4 170428331 chr4:SNP:933 G T 191 low_coverage;off_target DP=16;DP4=7,0,8,1;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs6855803,g1000:0.303115,esp5400:0.294407,ExAC:0.166; 4 170428352 chr4:SNP:934 G T 550 off_target DP=27;DP4=0,0,1,22;AD=0,23;TYPE=SNP;DBXREF=dbSNP:rs11335570,g1000:0.970847; 4 170428843 chr4:SNP:935 C A 182 low_coverage;off_target DP=19;DP4=5,5,5,4;AD=10,9;TYPE=SNP;DBXREF=dbSNP:rs17054977,g1000:0.203275,esp5400:0.204565,ExAC:0.128; 4 170429241 chr4:SNP:936 T A 178 low_coverage;off_target DP=14;DP4=6,0,8,0;AD=6,8;TYPE=SNP;DBXREF=dbSNP:rs66858776,g1000:0.204073; 4 170429359 chr4:SNP:937 C T 615 off_target DP=45;DP4=12,6,17,10;AD=18,27;TYPE=SNP;DBXREF=dbSNP:rs66509122,g1000:0.311701,esp5400:0.30167,ExAC:0.165; 4 170483153 chr4:SNP:938 T A 134 low_coverage;off_target DP=12;DP4=4,1,4,2;AD=5,6;TYPE=SNP;DBXREF=dbSNP:rs10022479,g1000:0.696685; 4 170501954 chr4:SNP:939 T C 326 off_target DP=27;DP4=6,6,9,6;AD=12,15;TYPE=SNP;DBXREF=dbSNP:rs7670271,g1000:0.304513,esp5400:0.269399,ExAC:0.112; 4 170508586 chr4:SNP:940 T C 109 off_target DP=24;DP4=11,6,5,2;AD=17,7;TYPE=SNP;DBXREF=dbSNP:rs9993493,g1000:0.303514; 4 170523570 chr4:SNP:941 C T 278 off_target DP=22;DP4=9,0,13,0;AD=9,13;TYPE=SNP;DBXREF=dbSNP:rs137904860,g1000:0.0081869; 4 175414246 chr4:SNP:942 A G 292 low_coverage;off_target DP=11;DP4=0,0,11,0;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs2612694,g1000:0.756589; 4 175443156 chr4:SNP:943 C T 1389 . DP=116;DP4=17,34,25,40;AD=51,65;TYPE=SNP;DBXREF=dbSNP:rs1050145,g1000:0.339257,esp5400:0.377394,ExAC:0.386; 4 175443424 chr4:INDEL:55 CT CTT 172 off_target DP=20;DP4=4,4,5,6;AD=8,11;TYPE=INDEL;DBXREF=dbSNP:rs11433148,g1000:0.277756; 4 178352679 chr4:SNP:944 T G 331 . DP=34;DP4=11,6,9,8;AD=17,17;TYPE=SNP;DBXREF=dbSNP:rs1061814,g1000:0.456869,ExAC:0.475; 4 178353046 chr4:SNP:945 G C 492 low_coverage;off_target DP=18;DP4=0,0,0,18;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs3805167,g1000:0.604034; 4 178355668 chr4:SNP:946 C G 300 low_coverage;off_target DP=12;DP4=0,0,4,8;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs4690521,g1000:0.989018,esp5400:0.986615,ExAC:0.997; 4 178359960 chr4:SNP:947 G C 1313 . DP=51;DP4=0,0,24,27;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs2228119,g1000:0.920927,esp5400:0.923499,ExAC:0.978,clinvar:rs2228119|2,MutationTaster:0; 4 178360476 chr4:SNP:948 C A 219 low_coverage;off_target DP=8;DP4=0,0,8,0;AD=0,8;TYPE=SNP;DBXREF=dbSNP:rs6830102,g1000:0.996206; 4 178360811 chr4:SNP:949 G T 1290 . DP=119;DP4=25,34,25,35;AD=59,60;TYPE=SNP;DBXREF=dbSNP:rs76491548,g1000:0.00179712,esp5400:0.008459,ExAC:0.009579,MutationTaster:1; 4 178361017 chr4:INDEL:56 GAAAAAAAA GAAAAAAA 219 off_target DP=28;DP4=0,1,0,27;AD=1,27;TYPE=INDEL;DBXREF=dbSNP:rs11312963,g1000:0.921126; 4 178363378 chr4:SNP:950 G A 239 low_coverage;off_target DP=9;DP4=0,0,8,1;AD=0,9;TYPE=SNP;DBXREF=dbSNP:rs11131799,g1000:0.610423,esp5400:0.60683,ExAC:0.643; 4 183814169 chr4:SNP:951 A G 190 off_target DP=20;DP4=4,6,3,7;AD=10,10;TYPE=SNP;DBXREF=dbSNP:rs2070805,g1000:0.194489,esp5400:0.239171,ExAC:0.239; 4 183815688 chr4:SNP:952 A G 309 . DP=50;DP4=19,14,9,8;AD=33,17;TYPE=SNP;DBXREF=dbSNP:rs4742,g1000:0.310703,esp5400:0.379903,ExAC:0.294; 4 183836490 chr4:SNP:953 C T 134 low_coverage;off_target DP=12;DP4=5,1,5,1;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs11730323,g1000:0.147364; 4 185310218 chr4:SNP:954 C T 712 . DP=51;DP4=10,9,20,12;AD=19,32;TYPE=SNP;DBXREF=dbSNP:rs1131553,g1000:0.423123,esp5400:0.375999,ExAC:0.422,MutationTaster:1; 4 185312027 chr4:SNP:955 C T 275 off_target DP=23;DP4=2,8,1,12;AD=10,13;TYPE=SNP;DBXREF=dbSNP:rs66641943,g1000:0.267173; 4 185339517 chr4:SNP:956 C T 340 off_target DP=30;DP4=4,11,4,11;AD=15,15;TYPE=SNP;DBXREF=dbSNP:rs2288246,g1000:0.497005; 4 185339641 chr4:SNP:957 T C 619 off_target DP=46;DP4=17,1,22,6;AD=18,28;TYPE=SNP;DBXREF=dbSNP:rs17488241,g1000:0.0341454,esp5400:0.061629,ExAC:0.064; 4 185550764 chr4:SNP:958 T C 109 low_coverage;off_target DP=10;DP4=0,5,0,5;AD=5,5;TYPE=SNP;DBXREF=dbSNP:rs4647693,g1000:0.417732; 4 185552183 chr4:SNP:959 G A 927 . DP=61;DP4=8,11,19,23;AD=19,42;TYPE=SNP;DBXREF=dbSNP:rs772801657,ExAC:4.942e-05; 4 185553098 chr4:SNP:960 T G 1362 . DP=103;DP4=14,25,24,40;AD=39,64;TYPE=SNP;DBXREF=dbSNP:rs2705897,g1000:0.592652,esp5400:0.762967,ExAC:0.652; 4 185553353 chr4:SNP:961 A T 258 off_target DP=26;DP4=11,3,12,0;AD=14,12;TYPE=SNP;DBXREF=dbSNP:rs1405944,g1000:0.429113; 4 185559487 chr4:SNP:962 G C 940 off_target DP=88;DP4=28,15,36,9;AD=43,45;TYPE=SNP;DBXREF=dbSNP:rs2705901,g1000:0.871805,esp5400:0.86904; 4 186423637 chr4:SNP:963 G A 1313 . DP=51;DP4=0,0,20,31;AD=0,51;TYPE=SNP;DBXREF=dbSNP:rs4635850,g1000:0.659545,esp5400:0.692787,ExAC:0.782,clinvar:rs4635850|2; 4 186423677 chr4:SNP:964 G A 721 off_target DP=28;DP4=0,0,3,25;AD=0,28;TYPE=SNP;DBXREF=dbSNP:rs10866276,g1000:0.659545,esp5400:0.693716,ExAC:0.782; 4 186427735 chr4:SNP:965 G A 902 . DP=92;DP4=26,22,25,19;AD=48,44;TYPE=SNP;DBXREF=dbSNP:rs62347360,g1000:0.00559105,esp5400:0.013199,ExAC:0.017,clinvar:rs62347360|1|2|2|2,MutationTaster:0.078; 4 186427841 chr4:SNP:966 T C 956 off_target DP=35;DP4=0,0,9,26;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2306705,g1000:0.764177,esp5400:0.802101,ExAC:0.812; 4 186444698 chr4:SNP:967 A C 309 low_coverage;off_target DP=12;DP4=0,0,1,11;AD=0,12;TYPE=SNP;DBXREF=dbSNP:rs4862543,g1000:0.719249; 4 186444704 chr4:SNP:968 C T 180 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs4861669; 4 186456617 chr4:SNP:969 A G 567 off_target DP=22;DP4=0,0,4,18;AD=0,22;TYPE=SNP;DBXREF=dbSNP:rs4862545,g1000:0.948283,esp5400:0.948896,ExAC:0.983,clinvar:rs4862545|; 4 187113041 chr4:SNP:970 C G 244 . DP=47;DP4=17,17,7,6;AD=34,13;TYPE=SNP;DBXREF=dbSNP:rs1055138,g1000:0.409744,esp5400:0.459789,ExAC:0.421,clinvar:rs1055138|5|2|3,MutationTaster:0; 4 187115632 chr4:SNP:971 C A 1154 off_target DP=105;DP4=32,18,29,26;AD=50,55;TYPE=SNP;DBXREF=dbSNP:rs10013653,g1000:0.403954,esp5400:0.484291,ExAC:0.361; 4 187115777 chr4:SNP:972 G C 356 off_target DP=34;DP4=0,18,1,15;AD=18,16;TYPE=SNP;DBXREF=dbSNP:rs62350517,g1000:0.0225639,esp5400:0.056051,ExAC:0.052; 4 187118040 chr4:INDEL:57 TTC T 110 low_coverage;off_target DP=13;DP4=8,0,4,1;AD=8,5;TYPE=INDEL;DBXREF=dbSNP:rs112367913; 4 187120211 chr4:SNP:973 C A 780 . DP=70;DP4=8,24,11,27;AD=32,38;TYPE=SNP;DBXREF=dbSNP:rs13146272,g1000:0.559305,esp5400:0.622815,ExAC:0.585,clinvar:rs13146272|2,MutationTaster:0; 4 187120377 chr4:SNP:974 C T 145 low_coverage;off_target DP=9;DP4=0,3,0,6;AD=3,6;TYPE=SNP;DBXREF=dbSNP:rs13146549,g1000:0.223043; 4 187122319 chr4:SNP:975 T G 171 low_coverage DP=16;DP4=7,1,7,1;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs3736455,g1000:0.577476,esp5400:0.637107,ExAC:0.598,clinvar:rs3736455|2; 4 187126550 chr4:INDEL:58 TCCCCC TCCCC 209 off_target DP=33;DP4=3,2,1,25;AD=5,26;TYPE=INDEL;DBXREF=dbSNP:rs3216724,g1000:0.344249; 4 187129995 chr4:SNP:976 A G 901 off_target DP=35;DP4=0,0,31,4;AD=0,35;TYPE=SNP;DBXREF=dbSNP:rs2276917,g1000:0.369409,esp5400:0.362986,ExAC:0.401; 4 187131504 chr4:SNP:977 G A 451 low_coverage;off_target DP=19;DP4=1,0,18,0;AD=1,18;TYPE=SNP;DBXREF=dbSNP:rs2102575,g1000:0.910343; 4 187159282 chr4:SNP:978 G C 207 low_coverage;off_target DP=17;DP4=7,0,10,0;AD=7,10;TYPE=SNP;DBXREF=dbSNP:rs4253256,g1000:0.716853; 4 187173012 chr4:SNP:979 T G 490 . DP=60;DP4=25,11,13,11;AD=36,24;TYPE=SNP;DBXREF=dbSNP:rs4253301,g1000:0.112819,esp5400:0.098717,ExAC:0.121,MutationTaster:0; 4 187178599 chr4:SNP:980 C T 145 low_coverage;off_target DP=6;DP4=0,0,0,6;AD=0,6;TYPE=SNP;DBXREF=dbSNP:rs4253326,g1000:0.800319; 4 187178613 chr4:SNP:981 A T 180 low_coverage;off_target DP=7;DP4=0,0,0,7;AD=0,7;TYPE=SNP;DBXREF=dbSNP:rs4253327,g1000:0.555511; 4 187179210 chr4:SNP:982 T C 170 . DP=21;DP4=11,1,7,2;AD=12,9;TYPE=SNP;DBXREF=dbSNP:rs925453,g1000:0.658147,esp5400:0.677728,ExAC:0.668,MutationTaster:0; 4 187179486 chr4:SNP:983 A G 690 off_target DP=26;DP4=0,0,0,26;AD=0,26;TYPE=SNP;DBXREF=dbSNP:rs3087505,g1000:0.91853; 4 187188141 chr4:INDEL:59 G GAT 400 low_coverage;off_target DP=17;DP4=2,0,15,0;AD=2,15;TYPE=INDEL;DBXREF=dbSNP:rs35709976,g1000:0.884385; 4 187188152 chr4:SNP:984 A C 209 low_coverage;off_target DP=15;DP4=6,0,9,0;AD=6,9;TYPE=SNP;DBXREF=dbSNP:rs3822057,g1000:0.537141; 4 187195551 chr4:SNP:985 T A 823 off_target DP=31;DP4=0,0,11,20;AD=0,31;TYPE=SNP;DBXREF=dbSNP:rs1593,g1000:0.867612; 4 187196853 chr4:SNP:986 T C 114 low_coverage;off_target DP=11;DP4=6,0,5,0;AD=6,5;TYPE=SNP;DBXREF=dbSNP:rs4253414,g1000:0.0101837; 4 187201001 chr4:SNP:987 A G 120 low_coverage;off_target DP=16;DP4=10,0,6,0;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs2241817,g1000:0.384385; 4 187201211 chr4:SNP:988 A G 396 . DP=68;DP4=24,21,13,10;AD=45,23;TYPE=SNP;DBXREF=dbSNP:rs5974,g1000:0.167133,esp5400:0.163878,ExAC:0.151,clinvar:rs5974|2,MutationTaster:0; 4 187205301 chr4:SNP:989 T C 1332 . DP=134;DP4=38,31,32,33;AD=69,65;TYPE=SNP;DBXREF=dbSNP:rs5970,g1000:0.169329,esp5400:0.164529,ExAC:0.154,clinvar:rs5970|2; 4 190873184 chr4:SNP:990 A G 492 low_coverage;off_target DP=18;DP4=0,0,17,1;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs12649534,g1000:0.959665; 4 190878597 chr4:SNP:991 C T 285 . DP=26;DP4=7,6,6,7;AD=13,13;TYPE=SNP;DBXREF=dbSNP:rs62345290,esp5400:0.402274; 4 190878661 chr4:SNP:992 A T 173 . DP=23;DP4=6,8,3,6;AD=14,9;TYPE=SNP;DBXREF=dbSNP:rs62345291; 4 191005384 chr4:SNP:993 A C 287 low_variant_fraction DP=176;DP4=116,40,13,7;AD=156,20;TYPE=SNP;DBXREF=MutationTaster:0.978; 4 191005408 chr4:SNP:994 T C 130 low_variant_fraction DP=210;DP4=140,56,12,0;AD=196,12;TYPE=SNP;DBXREF=MutationTaster:1; 4 191005460 chr4:SNP:995 T C 943 . DP=231;DP4=113,61,38,18;AD=174,56;TYPE=SNP;DBXREF=MutationTaster:1; 4 191006340 chr4:SNP:996 G C 241 . DP=34;DP4=12,10,7,5;AD=22,12;TYPE=SNP; 4 191006519 chr4:SNP:997 T A 130 . DP=29;DP4=18,3,5,2;AD=21,7;TYPE=SNP;DBXREF=MutationTaster:0; 4 191006771 chr4:SNP:998 C T 130 low_variant_fraction DP=219;DP4=85,122,5,6;AD=207,11;TYPE=SNP;DBXREF=MutationTaster:0; 4 191006773 chr4:SNP:999 G A 167 low_variant_fraction DP=220;DP4=87,119,5,9;AD=206,14;TYPE=SNP;DBXREF=MutationTaster:0; 4 191011977 chr4:SNP:1000 A C 376 low_variant_fraction DP=185;DP4=116,43,17,9;AD=159,26;TYPE=SNP;DBXREF=MutationTaster:1; 4 191012001 chr4:SNP:1001 T C 173 low_variant_fraction DP=218;DP4=137,65,15,0;AD=202,15;TYPE=SNP;DBXREF=MutationTaster:1; 4 191012053 chr4:SNP:1002 T C 623 low_variant_fraction DP=218;DP4=108,67,22,18;AD=175,40;TYPE=SNP;DBXREF=MutationTaster:0.763; 4 191012933 chr4:SNP:1003 G C 104 low_variant_fraction DP=39;DP4=17,16,3,3;AD=33,6;TYPE=SNP; 4 191013112 chr4:SNP:1004 T A 153 . DP=26;DP4=15,2,5,4;AD=17,9;TYPE=SNP;DBXREF=MutationTaster:1; 4 191013366 chr4:SNP:1005 G A 145 low_variant_fraction DP=225;DP4=84,127,4,8;AD=211,12;TYPE=SNP;DBXREF=MutationTaster:0.079; 5 223807 chr5:SNP:1 C T 164 low_coverage;off_target DP=16;DP4=0,8,0,8;AD=8,8;TYPE=SNP;DBXREF=dbSNP:rs3213839,g1000:0.247404; 5 224397 chr5:SNP:2 A G 404 off_target DP=40;DP4=17,4,17,2;AD=21,19;TYPE=SNP;DBXREF=dbSNP:rs35947614,g1000:0.0589058; 5 224418 chr5:SNP:3 T G 732 off_target DP=58;DP4=20,5,27,6;AD=25,33;TYPE=SNP;DBXREF=dbSNP:rs7732389,g1000:0.247404; 5 224633 chr5:SNP:4 A G 338 . DP=23;DP4=1,7,1,14;AD=8,15;TYPE=SNP;DBXREF=dbSNP:rs1139424,g1000:0.240016,esp5400:0.259301,ExAC:0.154,clinvar:rs1139424|255|2; 5 225774 chr5:SNP:5 A G 576 off_target DP=43;DP4=4,12,5,22;AD=16,27;TYPE=SNP;DBXREF=dbSNP:rs61492827,g1000:0.247404; 5 225796 chr5:SNP:6 T C 476 off_target DP=35;DP4=2,12,3,18;AD=14,21;TYPE=SNP;DBXREF=dbSNP:rs56342538,g1000:0.247404; 5 225941 chr5:SNP:7 C T 1251 off_target DP=49;DP4=0,0,39,10;AD=0,49;TYPE=SNP;DBXREF=dbSNP:rs59452511,g1000:0.307907; 5 226160 chr5:SNP:8 A C 293 . DP=28;DP4=4,10,3,11;AD=14,14;TYPE=SNP;DBXREF=dbSNP:rs6555055,g1000:0.247404,esp5400:0.272541,ExAC:0.157,clinvar:rs6555055|255|2; 5 228221 chr5:SNP:9 A G 417 off_target DP=28;DP4=10,0,17,1;AD=10,18;TYPE=SNP;DBXREF=dbSNP:rs3764982,g1000:0.247404; 5 228362 chr5:SNP:10 T C 797 . DP=81;DP4=14,29,11,27;AD=43,38;TYPE=SNP;DBXREF=dbSNP:rs2115272,g1000:0.247404,esp5400:0.273192,ExAC:0.157,clinvar:rs2115272|255|2; 5 230980 chr5:SNP:11 A G 10000 . DP=135;DP4=0,0,85,50;AD=0,135;TYPE=SNP;DBXREF=dbSNP:rs2288461,g1000:0.858427,esp5400:0.910671,ExAC:0.881,clinvar:rs2288461|2; 5 231111 chr5:SNP:12 T C 2145 . DP=85;DP4=0,0,28,55;AD=0,83;TYPE=SNP;DBXREF=dbSNP:rs1126417,g1000:0.653355,esp5400:0.764132,ExAC:0.707,clinvar:rs1126417|255|2; 5 231128 chr5:SNP:13 G A 460 off_target DP=63;DP4=13,26,6,18;AD=39,24;TYPE=SNP;DBXREF=dbSNP:rs201461936,esp5400:0.000279,ExAC:0.0002883; 5 231143 chr5:SNP:14 T C 686 off_target DP=49;DP4=4,14,10,21;AD=18,31;TYPE=SNP;DBXREF=dbSNP:rs2288459,g1000:0.247404,esp5400:0.272355,ExAC:0.156; 5 231260 chr5:SNP:15 C T 197 low_coverage;off_target DP=16;DP4=0,7,0,9;AD=7,9;TYPE=SNP;DBXREF=dbSNP:rs2288458,g1000:0.248003; 5 231270 chr5:SNP:16 C T 185 low_coverage;off_target DP=15;DP4=0,7,0,8;AD=7,8;TYPE=SNP;DBXREF=dbSNP:rs2288457,g1000:0.247404; 5 231286 chr5:SNP:17 C G 155 low_coverage;off_target DP=12;DP4=0,5,0,7;AD=5,7;TYPE=SNP;DBXREF=dbSNP:rs2288456,g1000:0.11861; 5 231301 chr5:SNP:18 C T 158 low_coverage;off_target DP=13;DP4=0,6,0,7;AD=6,7;TYPE=SNP;DBXREF=dbSNP:rs2288455,g1000:0.247804; 5 231337 chr5:SNP:19 A C 111 low_coverage;off_target DP=9;DP4=0,4,0,5;AD=4,5;TYPE=SNP;DBXREF=dbSNP:rs7736600,g1000:0.247404; 5 233572 chr5:SNP:20 A G 207 off_target DP=36;DP4=13,11,6,6;AD=24,12;TYPE=SNP;DBXREF=dbSNP:rs7710005,g1000:0.247204,esp5400:0.272263,ExAC:0.157,clinvar:rs7710005|2; 5 233734 chr5:SNP:21 C G 349 . DP=36;DP4=5,14,4,13;AD=19,17;TYPE=SNP;DBXREF=dbSNP:rs1041949,g1000:0.257788,esp5400:0.284532,ExAC:0.16,clinvar:rs1041949|255|2; 5 236405 chr5:SNP:22 C G 110 low_coverage;off_target DP=16;DP4=10,0,5,1;AD=10,6;TYPE=SNP;DBXREF=dbSNP:rs6878237,g1000:0.247404; 5 236753 chr5:SNP:23 C T 838 off_target DP=110;DP4=25,39,21,24;AD=64,45;TYPE=SNP;DBXREF=dbSNP:rs10057677,g1000:0.246805,esp5400:0.264689,ExAC:0.154; 5 236760 chr5:SNP:24 C A 1046 off_target DP=111;DP4=23,36,18,34;AD=59,52;TYPE=SNP;DBXREF=dbSNP:rs10057678,g1000:0.2498,esp5400:0.273336,ExAC:0.161; 5 251419 chr5:SNP:25 C T 299 off_target DP=62;DP4=26,19,12,5;AD=45,17;TYPE=SNP;DBXREF=dbSNP:rs10041187,g1000:0.248203,esp5400:0.218762,ExAC:0.129; 5 251469 chr5:SNP:26 G A 519 . DP=70;DP4=18,25,12,15;AD=43,27;TYPE=SNP;DBXREF=dbSNP:rs10039029,g1000:0.248403,esp5400:0.260712,ExAC:0.151,clinvar:rs1139449|255|2; 5 251541 chr5:SNP:27 A G 311 . DP=41;DP4=7,18,8,8;AD=25,16;TYPE=SNP;DBXREF=dbSNP:rs13070,g1000:0.248403,esp5400:0.271612,ExAC:0.156,clinvar:rs13070|255|2; 5 254340 chr5:SNP:28 C T 371 off_target DP=21;DP4=6,0,15,0;AD=6,15;TYPE=SNP;DBXREF=dbSNP:rs573662252,g1000:0.00199681; 5 254442 chr5:SNP:29 C T 1949 off_target DP=82;DP4=4,0,62,15;AD=4,77;TYPE=SNP;DBXREF=dbSNP:rs387134,g1000:0.973442,ExAC:0.983; 5 254574 chr5:SNP:30 C T 104 low_variant_fraction DP=188;DP4=74,105,4,5;AD=179,9;TYPE=SNP;DBXREF=MutationTaster:1; 5 254599 chr5:SNP:31 A T 919 . DP=186;DP4=56,79,16,35;AD=135,51;TYPE=SNP;DBXREF=dbSNP:rs6960,esp5400:0.076782,ExAC:0.09,clinvar:rs6960|2|2|2,MutationTaster:1; 5 256392 chr5:SNP:32 A T 154 low_variant_fraction;off_target DP=46;DP4=27,10,6,3;AD=37,9;TYPE=SNP;DBXREF=esp5400:0.005875; 5 256434 chr5:INDEL:1 ACT A 237 off_target DP=59;DP4=26,18,8,5;AD=44,13;TYPE=INDEL;DBXREF=dbSNP:rs372662724; 5 256472 chr5:SNP:33 G A 626 . DP=66;DP4=17,19,15,15;AD=36,30;TYPE=SNP;DBXREF=dbSNP:rs6961,g1000:0.335264,esp5400:0.280071,ExAC:0.171,clinvar:rs6961|255|2; 5 256509 chr5:SNP:34 G A 328 . DP=50;DP4=11,21,7,11;AD=32,18;TYPE=SNP;DBXREF=dbSNP:rs6962,g1000:0.175319,esp5400:0.195297,ExAC:0.131,clinvar:rs6962|255|2,MutationTaster:1; 5 304349 chr5:INDEL:2 AGACG A 110 low_variant_fraction;off_target DP=103;DP4=41,52,4,4;AD=93,8;TYPE=INDEL;DBXREF=dbSNP:rs542638819; 5 304462 chr5:SNP:35 C T 193 off_target DP=24;DP4=4,10,3,7;AD=14,10;TYPE=SNP;DBXREF=dbSNP:rs7448453,g1000:0.0664936; 5 413594 chr5:SNP:36 G C 1328 off_target DP=52;DP4=0,0,23,29;AD=0,52;TYPE=SNP;DBXREF=dbSNP:rs2261659,g1000:0.364816,esp5400:0.461176,ExAC:0.388; 5 413621 chr5:SNP:37 G A 1210 off_target DP=46;DP4=0,0,16,30;AD=0,46;TYPE=SNP;DBXREF=dbSNP:rs2261623,g1000:0.216653; 5 422752 chr5:SNP:38 T C 984 off_target DP=39;DP4=0,0,34,4;AD=0,38;TYPE=SNP;DBXREF=dbSNP:rs10072668,g1000:0.277356; 5 427842 chr5:SNP:39 G A 1243 off_target DP=56;DP4=4,1,26,23;AD=5,49;TYPE=SNP;DBXREF=dbSNP:rs41282623,g1000:0.0764776,esp5400:0.066013,ExAC:0.084; 5 432897 chr5:INDEL:3 TCCCCCCCC TCCCCCCC 261 off_target DP=39;DP4=2,1,19,17;AD=3,36;TYPE=INDEL;DBXREF=dbSNP:rs3214560,g1000:0.116214,ExAC:0.109; 5 434981 chr5:SNP:40 G C 2136 off_target DP=79;DP4=0,0,16,63;AD=0,79;TYPE=SNP;DBXREF=dbSNP:rs2672725,g1000:0.768171,esp5400:0.875965,ExAC:0.775; 5 1214005 chr5:INDEL:4 CCCT C 1628 off_target DP=66;DP4=2,0,45,16;AD=2,61;TYPE=INDEL;DBXREF=dbSNP:rs138649942,g1000:0.332867; 5 1214264 chr5:SNP:41 A G 677 off_target DP=25;DP4=0,0,0,25;AD=0,25;TYPE=SNP;DBXREF=dbSNP:rs6554663,g1000:0.74381; 5 1216775 chr5:SNP:42 A G 10000 . DP=127;DP4=0,0,57,70;AD=0,127;TYPE=SNP;DBXREF=dbSNP:rs4975629,g1000:0.840056,esp5400:0.927217,ExAC:0.903,clinvar:rs4975629|3; 5 1216900 chr5:SNP:43 G A 1038 . DP=114;DP4=26,36,24,28;AD=62,52;TYPE=SNP;DBXREF=dbSNP:rs35329108,g1000:0.21905,esp5400:0.26622,ExAC:0.217; 5 1218928 chr5:SNP:44 C T 133 low_coverage;off_target DP=12;DP4=6,0,6,0;AD=6,6;TYPE=SNP;DBXREF=dbSNP:rs6865308,g1000:0.302316; 5 1219316 chr5:SNP:45 C T 281 low_coverage;off_target DP=11;DP4=0,0,0,11;AD=0,11;TYPE=SNP;DBXREF=dbSNP:rs6554668,g1000:0.840056; 5 1221199 chr5:SNP:46 T C 488 low_coverage;off_target DP=18;DP4=0,0,18,0;AD=0,18;TYPE=SNP;DBXREF=dbSNP:rs12513763,g1000:0.842851; 5 1225564 chr5:SNP:47 T C 778 off_target DP=69;DP4=27,6,28,8;AD=33,36;TYPE=SNP;DBXREF=dbSNP:rs7728646,g1000:0.732428,esp5400:0.782706,ExAC:0.743; 5 1225613 chr5:SNP:48 G A 1388 . DP=137;DP4=41,28,47,21;AD=69,68;TYPE=SNP;DBXREF=dbSNP:rs7704058,g1000:0.740815,esp5400:0.792434,ExAC:0.764; 5 1225626 chr5:SNP:49 T A 1291 . DP=133;DP4=41,29,35,27;AD=70,62;TYPE=SNP;DBXREF=dbSNP:rs7728667,g1000:0.740415,esp5400:0.792526,ExAC:0.764,MutationTaster:0; 5 1225676 chr5:SNP:50 C T 1417 . DP=144;DP4=36,36,32,40;AD=72,72;TYPE=SNP;DBX