##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location">
##FILTER=<ID=LowQual,Description="Low quality">
##FILTER=<ID=filter,Description="QD < 2.0 || FS > 200.0 || ReadPosRankSum < -20.0">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block">
##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=RGQ,Number=1,Type=Integer,Description="Unconditional reference genotype confidence, encoded as a phred quality -10*log10 p(genotype call is wrong)">
##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias.">
##GATKCommandLine.GenotypeGVCFs=<ID=GenotypeGVCFs,Version=3.7-0-gcfedb67,Date="Tue Oct 10 14:29:15 HKT 2017",Epoch=1507616955623,CommandLineOptions="analysis_type=GenotypeGVCFs input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/ifshk4/BC_PUB/biosoft/PIPE_RD/DNA/DNA_Human_WES/DNA_Human_WES_2017a/Database/hg19/fa/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=/ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/callGVCF_GATK/15001702302303B.g.vcf.gz)])] out=/ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/callGVCF_GATK/15001702302303B.vcf.gz includeNonVariantSites=true uniquifySamples=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 annotation=[] group=[StandardAnnotation] dbsnp=(RodBinding name= source=UNBOUND) filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.7-0-gcfedb67,Date="Tue Oct 10 09:45:19 HKT 2017",Epoch=1507599919412,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/15001702302303B.realign.recal.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=[/ifshk4/BC_PUB/biosoft/PIPE_RD/DNA/DNA_Human_WES/DNA_Human_WES_2017a/Database/hg19/bed/ExonCaptureRegion_hg19_BGI_V4/CallVariantRegion/ex_region.sort.bed] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/ifshk4/BC_PUB/biosoft/PIPE_RD/DNA/DNA_Human_WES/DNA_Human_WES_2017a/Database/hg19/fa/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=LINEAR variant_index_parameter=128000 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[StrandBiasBySample] excludeAnnotation=[ChromosomeCounts, FisherStrand, StrandOddsRatio, QualByDepth] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=GVCF bamOutput=null bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=-0.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=true gcpHMM=10 pair_hmm_implementation=VECTOR_LOGLESS_CACHING pair_hmm_sub_implementation=ENABLE_ALL always_load_vector_logless_PairHMM_lib=false phredScaledGlobalReadMismappingRate=45 noFpga=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=false keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.SelectVariants=<ID=SelectVariants,Version=3.7-0-gcfedb67,Date="Tue Oct 10 17:21:33 HKT 2017",Epoch=1507627293106,CommandLineOptions="analysis_type=SelectVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/ifshk4/BC_PUB/biosoft/PIPE_RD/DNA/DNA_Human_WES/DNA_Human_WES_2017a/Database/hg19/fa/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/callGVCF_GATK/15001702302303B.vcf.gz) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=/ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/indel_GATK/15001702302303B.raw.indel.vcf.gz sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] exclude_sample_expressions=[] selectexpressions=[] invertselect=false excludeNonVariants=true excludeFiltered=false preserveAlleles=false removeUnusedAlternates=false restrictAllelesTo=ALL keepOriginalAC=false keepOriginalDP=false mendelianViolation=false invertMendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[INDEL] selectTypeToExclude=[] keepIDs=null excludeIDs=null fullyDecode=false justRead=false maxIndelSize=2147483647 minIndelSize=0 maxFilteredGenotypes=2147483647 minFilteredGenotypes=0 maxFractionFilteredGenotypes=1.0 minFractionFilteredGenotypes=0.0 maxNOCALLnumber=2147483647 maxNOCALLfraction=1.0 setFilteredGtToNocall=false ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false forceValidOutput=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine.VariantFiltration=<ID=VariantFiltration,Version=3.7-0-gcfedb67,Date="Tue Oct 10 17:35:43 HKT 2017",Epoch=1507628143699,CommandLineOptions="analysis_type=VariantFiltration input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/ifshk4/BC_PUB/biosoft/PIPE_RD/DNA/DNA_Human_WES/DNA_Human_WES_2017a/Database/hg19/fa/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/indel_GATK/15001702302303B.raw.indel.vcf.gz) mask=(RodBinding name= source=UNBOUND) out=/ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/indel_GATK/15001702302303B.filtered_indel.vcf.gz filterExpression=[QD < 2.0 || FS > 200.0 || ReadPosRankSum < -20.0] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=0 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false invertFilterExpression=false invertGenotypeFilterExpression=false setFilteredGtToNocall=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=RAW_MQ,Number=1,Type=Float,Description="Raw data for RMS Mapping Quality">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
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##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
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##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
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##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
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##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
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##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
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##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
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##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##reference=file:///ifshk4/BC_PUB/biosoft/PIPE_RD/DNA/DNA_Human_WES/DNA_Human_WES_2017a/Database/hg19/fa/hg19.fasta
##source=SelectVariants
##bcftools_viewVersion=1.2+htslib-1.2.1
##bcftools_viewCommand=view -f PASS -o /ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/indel_GATK/anno/15001702302303B.filtered_indel.vcf.gz -O z /ifshk5/BC_AS/BC_COM_P0/F17FTSEUET0052/HUMdklE/outdir/process/15001702302303B/indel_GATK/15001702302303B.filtered_indel.vcf.gz
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	15001702302303B
chr1	722074	.	A	ATT	53.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.56;QD=26.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	866511	.	C	CCCCT	2712.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.3;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61;MQRankSum=0.751;QD=29;ReadPosRankSum=0.924;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,67:71:16:2741,0,16
chr1	874950	.	T	TCCCTGGAGGACC	1140.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.28;SOR=4.255	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1169,78,0
chr1	878906	.	CTTTT	C	120.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:148,12,0
chr1	884091	.	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	2779.77	PASS	AC=2;AF=1;AN=2;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=3.16	GT:AD:DP:GQ:PL	1/1:0,43:44:99:2808,206,0
chr1	894890	.	A	AAGAC	20	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr1	900717	.	CTTAT	C	376.78	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=3.056	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,9:9:27:1|1:900717_CTTAT_C:405,27,0
chr1	948846	.	T	TA	1098.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.91;SOR=2.584	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,25:25:78:1|1:948846_T_TA:1127,78,0
chr1	957967	.	T	TTGTAGTCTGACCTGTGGTCTGAC	152.03	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:12:180,12,0
chr1	970549	.	TGG	T	274.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.91;ReadPosRankSum=1.37;SOR=5.136	GT:AD:DP:GQ:PL	0/1:2,10:14:9:288,0,9
chr1	978603	.	CCT	C	838.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=1.43;QD=18.64;ReadPosRankSum=0.875;SOR=0.323	GT:AD:DP:GQ:PL	0/1:22,23:45:99:867,0,971
chr1	984147	.	CAAAAAAAAAAA	C	118.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.85;ReadPosRankSum=0.48;SOR=0.527	GT:AD:DP:GQ:PL	0/1:4,4:10:99:147,0,311
chr1	984171	.	CAG	C	118.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.456;SOR=0.078	GT:AD:DP:GQ:PL	0/1:7,4:11:99:147,0,350
chr1	985443	.	AG	A	251.8	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.5;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,7:7:21:1|1:985443_AG_A:280,21,0
chr1	1158441	.	GCA	G	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-0.524;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,113
chr1	1229111	.	A	ACGCCCCTGCCCTGGAGGCCC	290.8	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.7;QD=34.02;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:21:319,21,0
chr1	1229340	.	T	TCGGGG	106.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62;MQRankSum=1.8;QD=13.35;ReadPosRankSum=0;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,234
chr1	1247578	.	T	TGGG	77.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.55;ReadPosRankSum=-1.036;SOR=2.833	GT:AD:DP:GQ:PL	0/1:2,3:5:40:106,0,40
chr1	1256507	.	G	GC	477.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.25;SOR=1.012	GT:AD:DP:GQ:PL	0/1:27,21:48:99:506,0,689
chr1	1267325	.	G	GC	376.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.892;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=2.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=1.68;SOR=0.572	GT:AD:DP:GQ:PL	0/1:24,17:41:99:405,0,617
chr1	1270088	.	AC	A	33.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:26:62,0,26
chr1	1275264	.	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	311.78	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.64;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:24:340,24,0
chr1	1276973	.	G	GACAC	802.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.1;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,16:16:60:831,60,0
chr1	1289367	.	CTG	C	1559.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.791;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=8.544;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.08;QD=17.53;ReadPosRankSum=0.744;SOR=0.61	GT:AD:DP:GQ:PL	0/1:47,42:89:99:1588,0,2088
chr1	1291159	.	GA	G	47.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr1	1323143	.	CCT	C	1558.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.02;QD=19.01;ReadPosRankSum=0.328;SOR=0.837	GT:AD:DP:GQ:PL	0/1:41,41:82:99:1587,0,1571
chr1	1323945	.	GTC	G	262.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.45;MQRankSum=0.621;QD=26.28;ReadPosRankSum=1.6;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,9:13:99:250,0,107
chr1	1334052	.	CTAGAG	C	1962.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.09;QD=17.22;ReadPosRankSum=-0.307;SOR=1.067	GT:AD:DP:GQ:PL	0/1:61,53:114:99:1991,0,2807
chr1	1390596	.	CAAA	C	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.86;MQRankSum=-1.534;QD=4.35;ReadPosRankSum=0.414;SOR=0.368	GT:AD:DP:GQ:PL	0/1:5,3:8:63:63,0,162
chr1	1500485	.	CAAGGCAGGCGGATCATG	C	53.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.92;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:82:82,0,111
chr1	1510035	.	GGC	G	88.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=-1.44;SOR=0.132	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,124
chr1	1564952	.	TG	T	531.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.19;ReadPosRankSum=0.893;SOR=1.426	GT:AD:DP:GQ:PL	0/1:14,21:35:99:560,0,337
chr1	1647649	.	C	CT	1130.77	PASS	AC=2;AF=1;AN=2;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.12;QD=28.92;SOR=6.666	GT:AD:DP:GQ:PL	1/1:0,27:27:87:1159,87,0
chr1	1647893	.	C	CTTTCTT	15327.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DP=982;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=2.83;QD=18.12;ReadPosRankSum=-5.175;SOR=0.656	GT:AD:DP:GQ:PL	0/1:450,396:846:99:15356,0,17506
chr1	1647968	.	C	CAT	4962.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=11.56;ClippingRankSum=0;DP=290;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.5;MQ=59.35;MQRankSum=-1.077;QD=18.31;ReadPosRankSum=-0.067;SOR=0.781	GT:AD:DP:GQ:PGT:PID:PL	0/1:139,132:271:99:0|1:1647968_C_CAT:4991,0,5372
chr1	1650938	.	CGG	C	1652.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=4.84;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.36;ReadPosRankSum=-1.288;SOR=0.41	GT:AD:DP:GQ:PGT:PID:PL	0/1:58,43:101:99:0|1:1650920_G_A:1681,0,2360
chr1	1650942	.	A	AAG	1620.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=4.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.81;SOR=0.258	GT:AD:DP:GQ:PGT:PID:PL	0/1:51,40:91:99:0|1:1650920_G_A:1649,0,2054
chr1	1651054	.	CTT	C	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.89;MQRankSum=-0.524;QD=7.35;ReadPosRankSum=-0.674;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:48:65,0,48
chr1	1651077	.	C	CTCGCTCTGTCACCCAGGCT	322.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.81;QD=26.88;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:24:351,24,0
chr1	1653332	.	GT	G	145.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.54;QD=29.18;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:174,15,0
chr1	1654065	.	AGCG	A	1345.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.45;QD=28.92;SOR=5.486	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,31:31:93:1|1:1654058_C_T:1374,93,0
chr1	1666447	.	G	GGTTT	125.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.03;QD=31.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr1	1669646	.	ACT	A	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.08;MQRankSum=0.414;QD=6.71;ReadPosRankSum=-0.099;SOR=0.18	GT:AD:DP:GQ:PL	0/1:8,3:11:99:102,0,327
chr1	1684347	.	C	CCCT	1423.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=9.799;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=0.939;QD=19.24;ReadPosRankSum=-0.175;SOR=0.195	GT:AD:DP:GQ:PL	0/1:35,39:77:99:1452,0,1342
chr1	1685921	.	TCCCTGGGACCGAAGTCGCCCCA	T	1587.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.62;QD=15.88;ReadPosRankSum=1.24;SOR=1.058	GT:AD:DP:GQ:PL	0/1:56,44:100:99:1616,0,11296
chr1	1690126	.	A	AAC	412.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=33.28;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,10:10:30:441,30,0
chr1	1724503	.	C	CAA	33.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=-0.319;SOR=0.916	GT:AD:DP:GQ:PL	0/1:1,3:4:24:62,0,24
chr1	1853615	.	T	TCTGA	736.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:51:765,51,0
chr1	1887091	.	CG	C	6006.77	PASS	AC=2;AF=1;AN=2;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.88;SOR=0.87	GT:AD:DP:GQ:PL	1/1:0,157:157:99:6035,472,0
chr1	1887111	.	GC	G	5960.77	PASS	AC=2;AF=1;AN=2;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=28.9;SOR=1.017	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5989,485,0
chr1	1988168	.	C	CT	17.63	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=8.82;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:44,6,0
chr1	2304198	.	GACC	G	323.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=65.64;MQRankSum=1.34;QD=29.43;ReadPosRankSum=0.778;SOR=0.582	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,9:11:99:0|1:2304198_GACC_G:352,0,176
chr1	2304201	.	C	CTG	323.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=65.64;MQRankSum=1.34;QD=29.43;ReadPosRankSum=0.551;SOR=0.582	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,9:11:99:0|1:2304198_GACC_G:352,0,177
chr1	2333944	.	T	TC	402.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,13:13:39:431,39,0
chr1	2398881	.	GCCTTCCTCA	G	111.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.674;QD=13.97;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:99:140,0,329
chr1	2530341	.	A	AG	265.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.19;QD=33.22;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
chr1	2938407	.	CAGA	C	2458.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.205;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.84;QD=17.69;ReadPosRankSum=-0.29;SOR=0.894	GT:AD:DP:GQ:PL	0/1:73,66:139:99:2487,0,3312
chr1	3310928	.	C	CCG	106.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr1	3394224	.	C	CG	217.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=31.11;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:246,21,0
chr1	3395973	.	ACC	A	842.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.02;QD=29.05;SOR=2.531	GT:AD:DP:GQ:PL	1/1:0,20:20:60:871,60,0
chr1	3407692	.	TG	T	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.95;ReadPosRankSum=-0.524;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,3:5:40:0|1:3407680_G_A:108,0,40
chr1	3418613	.	CCG	C	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.75;MQRankSum=1.15;QD=23.69;ReadPosRankSum=0;SOR=0.916	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,3:4:33:0|1:3418613_CCG_C:123,0,33
chr1	3477414	.	GGGCT	G	214.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.86;ReadPosRankSum=0.414;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,6:9:99:243,0,114
chr1	3544235	.	TA	T	2374.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0;DP=182;ExcessHet=3.0103;FS=3.697;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=2.15;QD=13.42;ReadPosRankSum=0.062;SOR=0.449	GT:AD:DP:GQ:PL	0/1:94,83:177:99:2403,0,2653
chr1	3545175	.	GTTCTGGGAGCTCCTCCCCC	G	7249.77	PASS	AC=2;AF=1;AN=2;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=27.88;SOR=1.902	GT:AD:DP:GQ:PL	1/1:0,164:164:99:7278,510,0
chr1	3566625	.	AGCAGGCTG	A	208.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.98;ReadPosRankSum=0.618;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,6:11:99:237,0,187
chr1	3599750	.	TG	T	591.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.459;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=5.56;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.16;QD=10.03;ReadPosRankSum=-1.085;SOR=1.508	GT:AD:DP:GQ:PL	0/1:33,26:59:99:620,0,847
chr1	3640134	.	TCTGC	T	196.9	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.16;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	3643465	.	C	CGATGGATGGGTG	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:6:90,6,0
chr1	3701557	.	C	CA	39.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.97;ReadPosRankSum=0;SOR=0.148	GT:AD:DP:GQ:PL	0/1:4,4:8:53:68,0,53
chr1	3732253	.	AT	A	53.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-0.21;QD=8.9;ReadPosRankSum=0.674;SOR=0.707	GT:AD:DP:GQ:PL	0/1:1,5:6:8:81,0,8
chr1	3743433	.	T	TG	2071.77	PASS	AC=2;AF=1;AN=2;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=5.926	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2100,177,0
chr1	3743553	.	C	CA	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.431;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,4:6:38:100,0,38
chr1	3750215	.	AC	A	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.47;ReadPosRankSum=0.854;SOR=0.368	GT:AD:DP:GQ:PL	0/1:5,3:8:72:72,0,178
chr1	3752868	.	CAA	C	78.81	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.45;QD=19.7;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,4:5:11:98,11,0
chr1	3753032	.	GT	G,GTT	557.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=1.369;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;MQRankSum=0.558;QD=7.06;ReadPosRankSum=-0.533;SOR=0.495	GT:AD:DP:GQ:PL	1/2:26,28,25:116:99:586,201,812,231,0,816
chr1	3759889	.	T	TA	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=6.593;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=1.27;QD=7.95;ReadPosRankSum=-1.402;SOR=2.2	GT:AD:DP:GQ:PL	0/1:13,11:32:99:219,0,222
chr1	3759940	.	A	AT	303.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.46;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=9.187;MLEAC=1;MLEAF=0.5;MQ=59.52;MQRankSum=1.94;QD=20.25;ReadPosRankSum=-1.025;SOR=3.767	GT:AD:DP:GQ:PL	0/1:4,11:17:22:332,0,22
chr1	3765095	.	C	CAAAAA	414.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.02;MQRankSum=-0.772;QD=31.91;ReadPosRankSum=0.823;SOR=1.002	GT:AD:DP:GQ:PL	0/1:7,6:28:99:443,0,469
chr1	3788978	.	G	GA	155.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.14;QD=4.1;ReadPosRankSum=1.44;SOR=0.944	GT:AD:DP:GQ:PL	0/1:24,14:44:99:184,0,460
chr1	3789194	.	G	GCGGCCC	502.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.09;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.34;ReadPosRankSum=-2.84;SOR=2.247	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,15:26:99:0|1:3789194_G_GCGGCCC:531,0,1353
chr1	3789195	.	T	TGTCCCTGCCGC	502.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.058;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.11;ReadPosRankSum=-2.804;SOR=2.133	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,14:25:99:0|1:3789194_G_GCGGCCC:531,0,1353
chr1	3816587	.	GC	G	286.8	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:21:1|1:3816587_GC_G:315,21,0
chr1	4832143	.	ATTTTT	A	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:4832143_ATTTTT_A:90,6,0
chr1	4832155	.	T	TAA	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:4832143_ATTTTT_A:90,6,0
chr1	5935394	.	G	GT	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:67:81,0,67
chr1	6012614	.	CCCCTGCCCCACCCACCCCTA	C	65.41	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:7:92,7,0
chr1	6029086	.	CA	C	263.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.751;QD=9.1;ReadPosRankSum=0.049;SOR=0.655	GT:AD:DP:GQ:PL	0/1:12,17:37:99:292,0,229
chr1	6170424	.	CG	C	1008.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.1;ReadPosRankSum=-0.942;SOR=1.027	GT:AD:DP:GQ:PL	0/1:28,31:59:99:1037,0,940
chr1	6180963	.	C	CA	25.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr1	6188044	.	TG	T	339.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.079;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=0.258;SOR=0.223	GT:AD:DP:GQ:PL	0/1:12,14:26:99:368,0,303
chr1	6219287	.	TCA	T,TCACA	997.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=6.006;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.31;MQRankSum=0.594;QD=19.19;ReadPosRankSum=-0.971;SOR=3.767	GT:AD:DP:GQ:PL	1/2:8,27,17:60:99:1026,261,610,680,0,1100
chr1	6239808	.	G	GC	116.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=29.01;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:144,12,0
chr1	6239937	.	C	CG	341.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:30:370,30,0
chr1	6252965	.	CCA	C	2094.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.32;ClippingRankSum=0;DP=148;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.15;QD=15.18;ReadPosRankSum=0.985;SOR=0.931	GT:AD:DP:GQ:PL	0/1:73,65:138:99:2123,0,2463
chr1	6291918	.	T	TA	107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.084;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.25;ReadPosRankSum=0.483;SOR=0.62	GT:AD:DP:GQ:PL	0/1:35,13:56:99:136,0,673
chr1	6453520	.	C	CG	173.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	6530965	.	C	CG	1806.77	PASS	AC=2;AF=1;AN=2;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=34.09;SOR=0.808	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,53:53:99:1|1:6530965_C_CG:1835,162,0
chr1	6609563	.	CAT	C	697.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.92;ReadPosRankSum=0.168;SOR=0.307	GT:AD:DP:GQ:PGT:PID:PL	0/1:10,18:28:99:1|0:6609559_C_A:726,0,366
chr1	6609792	.	G	GT	603.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.12;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=5.482;MLEAC=1;MLEAF=0.5;MQ=60.87;MQRankSum=1.53;QD=17.76;ReadPosRankSum=-0.63;SOR=2.494	GT:AD:DP:GQ:PL	0/1:14,20:34:99:632,0,417
chr1	6631352	.	TC	T	1340.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=30.47;SOR=3.816	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1369,132,0
chr1	6646959	.	GCCTGCCTTC	G	7714.77	PASS	AC=2;AF=1;AN=2;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=28.99;SOR=0.969	GT:AD:DP:GQ:PL	1/1:0,178:178:99:7743,541,0
chr1	6700131	.	C	CA	124.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.117;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.57;ReadPosRankSum=-0.884;SOR=1.981	GT:AD:DP:GQ:PL	0/1:9,10:30:99:153,0,174
chr1	6845577	.	CGAG	C	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.86;ReadPosRankSum=-0.992;SOR=0.495	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,287
chr1	7807966	.	GT	G	281.96	PASS	AC=2;AF=1;AN=2;BaseQRankSum=2.31;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=16.59;ReadPosRankSum=1.07;SOR=2.2	GT:AD:DP:GQ:PL	1/1:2,15:19:5:309,5,0
chr1	7809728	.	C	CT	1457.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.5;MQ=60.6;MQRankSum=0.757;QD=20.83;ReadPosRankSum=-0.783;SOR=0.462	GT:AD:DP:GQ:PL	1/1:8,62:85:39:1476,39,0
chr1	7861153	.	C	CT	952.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.03;QD=12.54;ReadPosRankSum=-0.239;SOR=0.693	GT:AD:DP:GQ:PL	0/1:38,38:76:99:981,0,961
chr1	7863735	.	CTTA	C	2871.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=0.89;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=1.72;QD=24.76;ReadPosRankSum=-0.882;SOR=0.523	GT:AD:DP:GQ:PL	0/1:42,74:116:99:2900,0,1810
chr1	7902559	.	C	CA	47.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.52;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.12;MQRankSum=0.366;QD=5.97;ReadPosRankSum=0.949;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:70:76,0,70
chr1	7906859	.	T	TAAGA	5705.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.899;ClippingRankSum=0;DP=298;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.81;QD=21.69;ReadPosRankSum=-1.607;SOR=0.762	GT:AD:DP:GQ:PL	0/1:117,146:263:99:5734,0,5902
chr1	7906958	.	G	GAGAA	684.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=-1.226;SOR=0.389	GT:AD:DP:GQ:PL	0/1:28,19:47:99:713,0,1479
chr1	7907620	.	A	ATAAT	331.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	7913184	.	C	CA	70.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.366;QD=10.11;ReadPosRankSum=-0.712;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:0:96,0,0
chr1	7980708	.	C	CA	59.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.98;ReadPosRankSum=-0.849;SOR=0.593	GT:AD:DP:GQ:PL	0/1:9,6:17:88:88,0,148
chr1	8022800	.	CT	C	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=0;QD=2.92;ReadPosRankSum=-0.618;SOR=1.259	GT:AD:DP:GQ:PL	0/1:18,9:36:99:107,0,330
chr1	8424984	.	GA	G	374.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.07;SOR=2.494	GT:AD:DP:GQ:PL	1/1:0,11:11:33:403,33,0
chr1	8555372	.	A	AT	33.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.65;ReadPosRankSum=-1.465;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,4:7:30:62,0,30
chr1	8926285	.	A	AG	974.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=3.863;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.09;QD=12.34;ReadPosRankSum=1.34;SOR=0.221	GT:AD:DP:GQ:PL	0/1:42,37:79:99:1003,0,1205
chr1	9006104	.	T	TC	594.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.53;ClippingRankSum=0;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.13;ReadPosRankSum=2.32;SOR=0.653	GT:AD:DP:GQ:PL	0/1:74,42:116:99:623,0,2129
chr1	9011885	.	A	AT	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.674;QD=7.99;ReadPosRankSum=0.409;SOR=0.693	GT:AD:DP:GQ:PL	0/1:8,8:16:99:156,0,140
chr1	9034815	.	C	CAGA	1533.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.54;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=4.753;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.01;QD=19.41;ReadPosRankSum=0.824;SOR=0.304	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1562,0,1749
chr1	9082739	.	CCACCT	C	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48;QD=26.13;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	9307308	.	T	TG	157.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:186,15,0
chr1	9671257	.	CT	C	303.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.03;QD=7.79;ReadPosRankSum=0.577;SOR=1.573	GT:AD:DP:GQ:PL	0/1:21,18:63:99:332,0,435
chr1	9714538	.	G	GGA	1008.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-0.924;QD=19.4;ReadPosRankSum=-1.66;SOR=0.307	GT:AD:DP:GQ:PGT:PID:PL	0/1:25,27:52:99:0|1:9714538_G_GGA:1037,0,4416
chr1	9714541	.	C	CCA	987.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.52;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-0.979;QD=21.02;ReadPosRankSum=-1.257;SOR=0.385	GT:AD:DP:GQ:PGT:PID:PL	0/1:24,23:47:99:0|1:9714538_G_GGA:1016,0,4418
chr1	9714543	.	A	ACCCC	865.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.422;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-0.978;QD=19.24;ReadPosRankSum=-1.171;SOR=0.382	GT:AD:DP:GQ:PGT:PID:PL	0/1:23,22:45:99:0|1:9714538_G_GGA:894,0,4391
chr1	9714544	.	A	AG	826.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.4;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=-1.113;QD=20.67;ReadPosRankSum=0.288;SOR=0.425	GT:AD:DP:GQ:PGT:PID:PL	0/1:23,17:40:99:0|1:9714538_G_GGA:855,0,4337
chr1	9777451	.	G	GGA	601.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr1	9792105	.	G	GA	53.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chr1	9797316	.	TG	T	34.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr1	9992159	.	TGGGGG	T	265.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.25;QD=27.46;SOR=2.584	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,7:7:21:1|1:9992159_TGGGGG_T:294,21,0
chr1	9992743	.	G	GA	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=0.919;QD=2.52;ReadPosRankSum=2.32;SOR=1.127	GT:AD:DP:GQ:PL	0/1:8,7:20:66:66,0,150
chr1	10066809	.	GTA	G	28.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.65;MQRankSum=0.431;QD=9.59;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:1:54,0,1
chr1	10189716	.	CT	C	11.12	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.78;ReadPosRankSum=1.38;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:39:39,0,41
chr1	10196978	.	C	CAAAT	208.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.98;ReadPosRankSum=0.618;SOR=0.859	GT:AD:DP:GQ:PL	0/1:5,6:11:99:237,0,232
chr1	10204804	.	AAAAG	A	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.44;ReadPosRankSum=0.319;SOR=2.788	GT:AD:DP:GQ:PL	0/1:1,3:4:44:122,0,44
chr1	10318543	.	CTT	C	3839.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.354;ClippingRankSum=0;DP=203;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=2.01;QD=19.1;ReadPosRankSum=1;SOR=0.799	GT:AD:DP:GQ:PL	0/1:100,101:201:99:3868,0,3964
chr1	10327623	.	T	TA	3063.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0;DP=209;ExcessHet=3.0103;FS=3.232;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.75;QD=15.47;ReadPosRankSum=-0.122;SOR=1.047	GT:AD:DP:GQ:PL	0/1:99,99:198:99:3092,0,3100
chr1	10332773	.	GTT	G	44.56	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:8:72,0,8
chr1	10332847	.	AT	A	47.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.9;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.97;ReadPosRankSum=1.42;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:76:76,0,88
chr1	10357206	.	A	AT	398.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=1.92;SOR=0.34	GT:AD:DP:GQ:PL	0/1:16,23:58:99:427,0,259
chr1	10380434	.	C	CAT	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:41:81,0,41
chr1	10384711	.	C	CTT	175.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.636;SOR=0.223	GT:AD:DP:GQ:PL	0/1:10,9:21:99:204,0,303
chr1	10408016	.	AT	A	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=0.431;QD=7.13;ReadPosRankSum=0.431;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,4:6:31:71,0,31
chr1	10408850	.	T	TC	830.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=4.25;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=4.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.322;SOR=0.25	GT:AD:DP:GQ:PL	0/1:49,26:82:99:859,0,1564
chr1	10423195	.	TAAGAA	T	520.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0.891;QD=22.64;ReadPosRankSum=-0.788;SOR=0.399	GT:AD:DP:GQ:PL	0/1:9,14:23:99:549,0,557
chr1	10425117	.	AT	A	777.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=0.255;SOR=0.693	GT:AD:DP:GQ:PL	0/1:18,38:56:99:806,0,336
chr1	10468005	.	C	CA	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.28;ReadPosRankSum=-1.255;SOR=1.67	GT:AD:DP:GQ:PL	0/1:26,12:52:99:153,0,523
chr1	10472869	.	GTGAGGAGCCCTTGCCTC	G	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
chr1	10490759	.	TTGGCTTAAC	T	76.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.68;ReadPosRankSum=1.69;SOR=0.223	GT:AD:DP:GQ:PL	0/1:7,3:10:99:105,0,759
chr1	10502307	.	AT	A	267.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.811;SOR=1.292	GT:AD:DP:GQ:PL	0/1:7,15:22:99:296,0,119
chr1	10511330	.	AT	A	278.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.176;SOR=0.356	GT:AD:DP:GQ:PL	0/1:12,17:29:99:307,0,230
chr1	10523728	.	C	CT	149.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0;QD=3.19;ReadPosRankSum=0.248;SOR=0.749	GT:AD:DP:GQ:PL	0/1:33,14:53:99:178,0,662
chr1	11026381	.	TA	T	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=1.62;QD=2.17;ReadPosRankSum=-0.227;SOR=0.012	GT:AD:DP:GQ:PL	0/1:11,5:16:63:63,0,209
chr1	11042201	.	C	CAG	2489.77	PASS	AC=2;AF=1;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.76;QD=33.55;SOR=3.219	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2518,172,0
chr1	11118618	.	C	CA	23.2	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.18;QD=7.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:50,9,0
chr1	11133934	.	C	CA	95.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.483;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.99;ReadPosRankSum=-0.616;SOR=0.976	GT:AD:DP:GQ:PL	0/1:8,8:22:99:124,0,120
chr1	11140620	.	AAC	A	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.372;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.07;ReadPosRankSum=0;SOR=0.76	GT:AD:DP:GQ:PL	0/1:6,5:11:73:73,0,133
chr1	11227302	.	T	TA	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.08;ReadPosRankSum=-1.981;SOR=1.329	GT:AD:DP:GQ:PL	0/1:6,4:10:69:69,0,92
chr1	11593793	.	T	TGCACACACGCAC	1980.77	PASS	AC=2;AF=1;AN=2;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.56;QD=30.4;SOR=2.964	GT:AD:DP:GQ:PL	1/1:0,35:35:99:2009,139,0
chr1	11709051	.	A	AG	528.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=2.67	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:42:1|1:11709051_A_AG:557,42,0
chr1	11709052	.	C	CCCAG	528.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.55;SOR=2.67	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:42:1|1:11709051_A_AG:557,42,0
chr1	11740329	.	AGGCGTGAGCCAC	A	1290.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.37;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=7.508;MLEAC=1;MLEAF=0.5;MQ=59.18;MQRankSum=-3.345;QD=16.13;ReadPosRankSum=0.532;SOR=1.759	GT:AD:DP:GQ:PGT:PID:PL	0/1:45,35:80:99:0|1:11740329_AGGCGTGAGCCAC_A:1319,0,1784
chr1	11796168	.	CGGGCG	C	646.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.27;SOR=1.112	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr1	11822434	.	GC	G	158.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.274;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=0.557;SOR=1.402	GT:AD:DP:GQ:PL	0/1:7,7:14:99:187,0,177
chr1	11839850	.	CT	C	243.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=1.51;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.38;QD=9.03;ReadPosRankSum=-1.231;SOR=0.425	GT:AD:DP:GQ:PL	0/1:17,10:27:99:272,0,493
chr1	11847334	.	G	GGAA	621.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=2.21;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.09;QD=18.84;ReadPosRankSum=-0.704;SOR=0.297	GT:AD:DP:GQ:PL	0/1:17,16:33:99:650,0,788
chr1	11887373	.	T	TG	934.77	PASS	AC=2;AF=1;AN=2;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,31:31:93:963,93,0
chr1	11887487	.	CT	C	22.56	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=5.64;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	1/1:1,3:4:2:48,2,0
chr1	11917620	.	T	TA	415.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=11.579;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=0.924;QD=11.88;ReadPosRankSum=-1.652;SOR=3.755	GT:AD:DP:GQ:PL	0/1:15,20:35:99:444,0,278
chr1	11983684	.	TA	T	134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.12;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-1.225;SOR=2.03	GT:AD:DP:GQ:PL	0/1:8,5:13:99:163,0,284
chr1	12004479	.	T	TACACACAC	511.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.28;QD=33.26;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,11:13:39:524,39,0
chr1	12058606	.	AAAAAC	A	196.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.61;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	12066218	.	T	TA	69.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:96,9,0
chr1	12083116	.	C	CT	17.07	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.09;MQRankSum=-0.524;QD=3.41;ReadPosRankSum=0.524;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:14:45,0,14
chr1	12144801	.	CTG	C	80.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.385;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-1.44;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,115
chr1	12195372	.	C	CAAA	15.1	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=15.1;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
chr1	12252333	.	CTG	C	509.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DP=133;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.79;ReadPosRankSum=0.358;SOR=1.034	GT:AD:DP:GQ:PL	0/1:64,24:96:99:538,0,1819
chr1	12316747	.	G	GT	18.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.79;ReadPosRankSum=0.524;SOR=2.833	GT:AD:DP:GQ:PL	0/1:2,3:5:16:47,0,16
chr1	12330939	.	AT	A	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.691;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=0.869;QD=3.6;ReadPosRankSum=0.563;SOR=0.368	GT:AD:DP:GQ:PL	0/1:8,5:13:75:75,0,148
chr1	12350844	.	CT	C	15.01	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:17:43,0,17
chr1	12398045	.	GAA	G	83.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.77;ReadPosRankSum=0.524;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:18:112,0,18
chr1	12639197	.	GCCA	G	319.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.83;ReadPosRankSum=0.129;SOR=1.179	GT:AD:DP:GQ:PL	0/1:10,9:19:99:348,0,393
chr1	12853974	.	A	AT	705.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.5;MQ=44.12;MQRankSum=-5.251;QD=6.19;ReadPosRankSum=-2.823;SOR=1.12	GT:AD:DP:GQ:PL	0/1:90,24:114:99:734,0,3705
chr1	12853975	.	G	GCAT	870.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-4.211;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=8.278;MLEAC=1;MLEAF=0.5;MQ=44.16;MQRankSum=-6.955;QD=9.36;ReadPosRankSum=-1.282;SOR=2.616	GT:AD:DP:GQ:PL	0/1:69,24:115:99:899,0,2942
chr1	12888601	.	G	GC	16157.8	PASS	AC=2;AF=1;AN=2;DP=489;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.33;QD=29.23;SOR=0.793	GT:AD:DP:GQ:PL	1/1:0,458:460:99:16186,1407,0
chr1	12908349	.	A	AT	326.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.444;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.26;MQRankSum=-0.257;QD=23.34;ReadPosRankSum=-0.257;SOR=0.399	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,9:14:99:0|1:12908333_T_C:355,0,262
chr1	12908384	.	G	GA	137.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.13;MQRankSum=-1.776;QD=12.52;ReadPosRankSum=0.349;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,5:11:99:0|1:12908375_T_C:166,0,241
chr1	14109408	.	CT	C	351.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.25;QD=5.86;ReadPosRankSum=-0.915;SOR=1.03	GT:AD:DP:GQ:PL	0/1:35,25:82:99:380,0,782
chr1	15438825	.	ATGTGTGTGTGTGTG	A	197.9	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.18;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:226,15,0
chr1	15439083	.	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	1425.77	PASS	AC=2;AF=1;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=33.9;SOR=3.407	GT:AD:DP:GQ:PL	1/1:0,30:30:97:1454,97,0
chr1	15578031	.	TTTGA	T	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	15701359	.	TG	T	196.9	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.81;QD=34.15;SOR=3.258	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,4:4:15:1|1:15701350_T_G:225,15,0
chr1	15714831	.	C	CCATT	559.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=5.74;MLEAC=1;MLEAF=0.5;MQ=62.82;MQRankSum=0.754;QD=32.66;ReadPosRankSum=1.05;SOR=2.225	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,14:15:0:0|1:15714831_C_CCATT:585,0,0
chr1	15769876	.	G	GC	2084.77	PASS	AC=2;AF=1;AN=2;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.5;QD=34.75;SOR=1.46	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2113,180,0
chr1	15772498	.	T	TATTC	56.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	15783096	.	GA	G	555.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.48;QD=23.16;SOR=4.091	GT:AD:DP:GQ:PL	1/1:0,24:24:72:584,72,0
chr1	15783117	.	C	CA	1378.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=33.2;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1407,114,0
chr1	15873410	.	CT	C	173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.86;ReadPosRankSum=0.198;SOR=0.96	GT:AD:DP:GQ:PL	0/1:29,16:65:99:202,0,569
chr1	15890342	.	CA	C	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.05;MQRankSum=0.292;QD=6.58;ReadPosRankSum=-0.401;SOR=0.651	GT:AD:DP:GQ:PL	0/1:16,13:40:99:219,0,313
chr1	16056541	.	TGGGCGGGGCGGGGCG	T	242.82	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.05;SOR=1.329	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:19:1|1:16056541_TGGGCGGGGCGGGGCG_T:271,19,0
chr1	16056588	.	GA	G	101.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.73;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:16056541_TGGGCGGGGCGGGGCG_T:128,9,0
chr1	16056942	.	G	GA	808.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.36;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;MQRankSum=0;QD=25.27;ReadPosRankSum=0;SOR=1.981	GT:AD:DP:GQ:PL	1/1:1,31:35:83:837,83,0
chr1	16058698	.	CA	C	800.77	PASS	AC=2;AF=1;AN=2;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.47;QD=25.98;SOR=1.23	GT:AD:DP:GQ:PL	1/1:0,21:21:63:829,63,0
chr1	16062916	.	GCCA	G	431.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.94;QD=32.58;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,11:11:33:460,33,0
chr1	16065276	.	AACAC	A,AAC	384.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=61.78;QD=32.06;SOR=1.445	GT:AD:DP:GQ:PL	1/2:0,3,9:12:74:413,288,281,108,0,74
chr1	16101716	.	CAAAAAAAA	C	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.33;MQRankSum=0.967;QD=17.59;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,2:3:81:0|1:16101716_CAAAAAAAA_C:81,0,96
chr1	16265060	.	CT	C	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.524;QD=4.38;ReadPosRankSum=-0.608;SOR=1.085	GT:AD:DP:GQ:PL	0/1:4,6:10:44:72,0,44
chr1	16348984	.	AAC	A	39.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.542;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.49;ReadPosRankSum=-0.135;SOR=0.693	GT:AD:DP:GQ:PL	0/1:13,3:16:68:68,0,452
chr1	16370733	.	CAG	C	209.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=34.97;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr1	16370873	.	C	CACACACACACACAT	755.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.29;QD=31.59;SOR=4.047	GT:AD:DP:GQ:PL	1/1:0,15:15:54:784,54,0
chr1	16373199	.	CCTT	C	4213.77	PASS	AC=2;AF=1;AN=2;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=31.57;SOR=2.761	GT:AD:DP:GQ:PL	1/1:0,95:95:99:4242,286,0
chr1	16376230	.	A	AT	3872.77	PASS	AC=2;AF=1;AN=2;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.19;QD=23.3;SOR=2.331	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,83:83:99:1|1:16376230_A_AT:3901,270,0
chr1	16376238	.	TC	T	2720.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=5.18;MLEAC=2;MLEAF=1;MQ=52.47;MQRankSum=-0.758;QD=30.57;ReadPosRankSum=1.71;SOR=1.739	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2749,244,0
chr1	16383329	.	T	TC	548.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.78;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=5.441;MLEAC=2;MLEAF=1;MQ=34.63;MQRankSum=-0.829;QD=27.91;ReadPosRankSum=-0.248;SOR=2.056	GT:AD:DP:GQ:PGT:PID:PL	1/1:1,13:14:36:1|1:16383329_T_TC:577,36,0
chr1	16386305	.	G	GC	140.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.62;MQRankSum=1.47;QD=20.01;ReadPosRankSum=-0.366;SOR=2.584	GT:AD:DP:GQ:PL	0/1:1,6:7:11:168,0,11
chr1	16388852	.	AC	A	360.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.04;QD=30.87;SOR=0.892	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,9:9:30:1|1:16388852_AC_A:389,30,0
chr1	16388875	.	GCC	G	592.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.72;QD=26.87;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,11:13:45:606,45,0
chr1	16457126	.	C	CT	23.58	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=11.79;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr1	16460743	.	TAAC	T	230.84	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=26.78;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:259,18,0
chr1	16474839	.	AC	A	2351.77	PASS	AC=2;AF=1;AN=2;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=32.22;SOR=3.352	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2380,220,0
chr1	16528469	.	GCC	G	328.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.275;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.55;ReadPosRankSum=0.883;SOR=0.105	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,9:16:99:0|1:16528469_GCC_G:357,0,974
chr1	16528472	.	TACCCTAGGGACC	T	328.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.55;ReadPosRankSum=0.935;SOR=0.105	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,9:16:99:0|1:16528469_GCC_G:357,0,974
chr1	16528823	.	GCCATGGGGACGGGGTGCCCA	G	216.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.33;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=65.69;MQRankSum=3.2;QD=14.45;ReadPosRankSum=0.224;SOR=0.551	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,7:15:99:0|1:16528823_GCCATGGGGACGGGGTGCCCA_G:245,0,286
chr1	16533085	.	A	AC	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=1.1;QD=6.71;ReadPosRankSum=1.18;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,3:11:99:0|1:16533085_A_AC:102,0,385
chr1	16533830	.	AATTC	A	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.447;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.71;ReadPosRankSum=0.577;SOR=0.889	GT:AD:DP:GQ:PL	0/1:8,3:11:99:102,0,395
chr1	16583030	.	C	CA	412.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=8.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.37;ReadPosRankSum=0.051;SOR=0.12	GT:AD:DP:GQ:PL	0/1:35,21:56:99:441,0,723
chr1	16727305	.	G	GCTT	4645.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0;DP=297;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.12;QD=17.02;ReadPosRankSum=-1.561;SOR=0.636	GT:AD:DP:GQ:PL	0/1:151,122:273:99:4674,0,6234
chr1	16862813	.	CA	C	70.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=45.48;MQRankSum=-2.838;QD=5.9;ReadPosRankSum=0.577;SOR=0.022	GT:AD:DP:GQ:PGT:PID:PL	0/1:9,3:12:99:0|1:16862813_CA_C:99,0,336
chr1	16890787	.	ATAGATCCAT	A	2648.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0;DP=258;ExcessHet=3.0103;FS=2.415;MLEAC=1;MLEAF=0.5;MQ=57.67;MQRankSum=-7.269;QD=15.49;ReadPosRankSum=-0.57;SOR=0.206	GT:AD:DP:GQ:PL	0/1:99,72:171:99:2677,0,3854
chr1	16890814	.	T	TA	196.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.705;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=3.044;MLEAC=1;MLEAF=0.5;MQ=55.08;MQRankSum=-0.214;QD=2.21;ReadPosRankSum=1.87;SOR=0.152	GT:AD:DP:GQ:PL	0/1:69,20:97:99:225,0,1363
chr1	16895392	.	AC	A	4634.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.42;ClippingRankSum=0;DP=366;ExcessHet=3.0103;FS=18.529;MLEAC=1;MLEAF=0.5;MQ=39.44;MQRankSum=-4.432;QD=13.2;ReadPosRankSum=-0.421;SOR=1.119	GT:AD:DP:GQ:PL	0/1:185,166:351:99:4663,0,5108
chr1	17084536	.	TGGAACA	T	3956.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DP=429;ExcessHet=3.0103;FS=21.473;MLEAC=1;MLEAF=0.5;MQ=33.35;MQRankSum=2.15;QD=9.92;ReadPosRankSum=-0.171;SOR=1.609	GT:AD:DP:GQ:PL	0/1:282,117:399:99:3985,0,11457
chr1	17086085	.	G	GC	767.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.18;QD=29.84;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,16:16:72:796,72,0
chr1	17087244	.	AC	A	1325.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DP=212;ExcessHet=3.0103;FS=12.236;MLEAC=1;MLEAF=0.5;MQ=50.02;MQRankSum=1.26;QD=7.01;ReadPosRankSum=-0.134;SOR=1.407	GT:AD:DP:GQ:PL	0/1:130,59:189:99:1354,0,3771
chr1	17087541	.	GGTGCT	G	2798.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.95;ClippingRankSum=0;DP=242;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.5;MQ=49.52;MQRankSum=-9.079;QD=11.91;ReadPosRankSum=1.16;SOR=0.782	GT:AD:DP:GQ:PL	0/1:155,80:235:99:2827,0,6230
chr1	17090902	.	A	AT	161.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.5;MQ=38.11;MQRankSum=-2.286;QD=2.16;ReadPosRankSum=-1.54;SOR=0.969	GT:AD:DP:GQ:PL	0/1:63,12:75:99:190,0,2010
chr1	17198108	.	CT	C	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.61;MQRankSum=-1.501;QD=3.18;ReadPosRankSum=0.842;SOR=0.446	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,2:10:60:0|1:17198102_G_T:60,0,399
chr1	17257187	.	G	GTCCGAGGGAGCACTC	238.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.28;MQRankSum=1.66;QD=23.88;ReadPosRankSum=-2.155;SOR=2.303	GT:AD:DP:GQ:PL	0/1:3,7:14:99:248,0,237
chr1	17270845	.	C	CG	357.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=1.82;MLEAC=1;MLEAF=0.5;MQ=58.19;MQRankSum=1.28;QD=18.83;ReadPosRankSum=0.579;SOR=1.27	GT:AD:DP:GQ:PL	0/1:8,11:19:99:386,0,260
chr1	17301900	.	AGACAGAACCTGGCACGGGAGCCCG	A	675.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.874;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=7.429;MLEAC=1;MLEAF=0.5;MQ=61.7;MQRankSum=5.98;QD=15.36;ReadPosRankSum=1.34;SOR=0.052	GT:AD:DP:GQ:PL	0/1:25,19:44:99:704,0,4996
chr1	17313244	.	CCCCAGGGCTCCT	C	400.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.22;ReadPosRankSum=-1.36;SOR=1.162	GT:AD:DP:GQ:PL	0/1:11,11:22:99:429,0,414
chr1	17323366	.	T	TG	132.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.97;ReadPosRankSum=1.07;SOR=0.18	GT:AD:DP:GQ:PL	0/1:2,5:7:38:161,0,38
chr1	17596980	.	C	CA	158.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.698;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.91;QD=3.97;ReadPosRankSum=0.844;SOR=0.416	GT:AD:DP:GQ:PL	0/1:26,14:55:99:187,0,559
chr1	17660802	.	A	ATT	730.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=3.803;MLEAC=1;MLEAF=0.5;MQ=59.59;MQRankSum=-1.499;QD=16.99;ReadPosRankSum=1.26;SOR=1.261	GT:AD:DP:GQ:PL	0/1:23,20:65:99:759,0,659
chr1	17666545	.	GCGCA	G	100.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=33.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	17699379	.	A	AAC	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.992;SOR=0.307	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,3:8:99:0|1:17699379_A_AAC:122,0,198
chr1	17699509	.	G	GGTGA	3161.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.382;ClippingRankSum=0;DP=164;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.52;ReadPosRankSum=-0.533;SOR=1.034	GT:AD:DP:GQ:PL	0/1:81,81:162:99:3190,0,3120
chr1	17718671	.	AG	A	4411.77	PASS	AC=2;AF=1;AN=2;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=36.02;SOR=1.572	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4440,376,0
chr1	17720686	.	AG	A	1302.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.127	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1331,126,0
chr1	17721695	.	GT	G	1365.77	PASS	AC=2;AF=1;AN=2;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,29:32:99:1394,99,0
chr1	17738570	.	AC	A	2943.77	PASS	AC=2;AF=1;AN=2;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=32.61;SOR=1.206	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2972,253,0
chr1	17749459	.	C	CCAA	376.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.59;SOR=0.892	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr1	17948305	.	G	GGGCCACAGCAGGTACT	1244.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.403;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.23;QD=19.76;ReadPosRankSum=-0.922;SOR=1.727	GT:AD:DP:GQ:PL	0/1:37,26:63:99:1273,0,5605
chr1	18023997	.	G	GC	298.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=1.8;QD=14.23;ReadPosRankSum=-0.211;SOR=0.495	GT:AD:DP:GQ:PL	0/1:10,11:21:99:327,0,311
chr1	18434904	.	A	ATAC	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=-0.126;SOR=0.859	GT:AD:DP:GQ:PL	0/1:2,3:5:72:120,0,72
chr1	18958346	.	AC	A	63.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=10;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.524;SOR=2.78	GT:AD:DP:GQ:PL	0/1:2,3:5:56:92,0,56
chr1	19071179	.	GATAA	G	37.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr1	19168181	.	AG	A	634.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=1.75;SOR=0.638	GT:AD:DP:GQ:PL	0/1:24,23:47:99:663,0,712
chr1	19168478	.	G	GA	240.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.635;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.06;ReadPosRankSum=1.39;SOR=3.126	GT:AD:DP:GQ:PL	0/1:3,9:17:6:221,0,6
chr1	19201211	.	T	TG	363.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.21;QD=12.13;ReadPosRankSum=-0.084;SOR=0.675	GT:AD:DP:GQ:PL	0/1:17,13:30:99:392,0,542
chr1	19208145	.	G	GGGTTGCCT	3154.77	PASS	AC=2;AF=1;AN=2;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.08;SOR=3.422	GT:AD:DP:GQ:PL	1/1:0,56:56:99:3183,213,0
chr1	19238803	.	AT	A	104.84	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.47;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:133,18,0
chr1	19408294	.	G	GC	5287.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0;DP=471;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=2.15;QD=12.07;ReadPosRankSum=-0.74;SOR=0.865	GT:AD:DP:GQ:PL	0/1:234,204:438:99:5316,0,6300
chr1	19423486	.	CTT	C,CT	264.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=22.06;SOR=1.981	GT:AD:DP:GQ:PL	1/2:0,6,6:12:99:293,122,116,135,0,101
chr1	19441688	.	CACAT	C	213.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=28.62;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:1|1:19441688_CACAT_C:242,18,0
chr1	19441693	.	GCA	G	213.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=31.82;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:1|1:19441688_CACAT_C:242,18,0
chr1	19474751	.	G	GA	47.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.97;ReadPosRankSum=1.42;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:65:76,0,65
chr1	19476307	.	GAA	G	60.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=2.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.53;ReadPosRankSum=0;SOR=0.141	GT:AD:DP:GQ:PL	0/1:19,5:27:89:89,0,664
chr1	19493394	.	T	TA	454.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.94;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,19:19:57:483,57,0
chr1	19513570	.	TTA	T	844.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=0.611;QD=26.4;ReadPosRankSum=0.827;SOR=2.179	GT:AD:DP:GQ:PL	0/1:4,28:32:47:873,0,47
chr1	19571256	.	GA	G	201.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.46;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=1.08;QD=7.76;ReadPosRankSum=1.16;SOR=1.73	GT:AD:DP:GQ:PL	0/1:13,13:26:99:230,0,223
chr1	19581442	.	G	GAA	480.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=3.05;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.927;QD=17.81;ReadPosRankSum=0.184;SOR=0.143	GT:AD:DP:GQ:PL	0/1:16,11:37:99:509,0,536
chr1	19638643	.	G	GCCGGGGGCC	152.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.56;ReadPosRankSum=-0.524;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:27:181,0,27
chr1	19652133	.	G	GGT	178.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.81;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.5;MQ=61.38;MQRankSum=0;QD=8.51;ReadPosRankSum=2.1;SOR=2.093	GT:AD:DP:GQ:PL	0/1:12,9:21:99:207,0,354
chr1	19654023	.	A	ATCCCTCCCTCCC	316.79	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=30.46;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,8:8:23:345,23,0
chr1	19683757	.	A	AATCTT	331.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	20221013	.	TCTAAGTCAG	T	2250.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.92;ReadPosRankSum=-0.641;SOR=0.444	GT:AD:DP:GQ:PGT:PID:PL	0/1:55,58:113:99:0|1:20221013_TCTAAGTCAG_T:2279,0,7011
chr1	20221029	.	G	GA	2154.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.235;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.33;ReadPosRankSum=-1.572;SOR=0.494	GT:AD:DP:GQ:PGT:PID:PL	0/1:50,51:101:99:0|1:20221013_TCTAAGTCAG_T:2183,0,6591
chr1	20446170	.	GT	G	62.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr1	20654157	.	ATGG	A	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.08;ReadPosRankSum=-1.732;SOR=0.892	GT:AD:DP:GQ:PL	0/1:7,3:10:69:69,0,282
chr1	20829808	.	TA	T	372.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.31;ReadPosRankSum=-0.777;SOR=0.793	GT:AD:DP:GQ:PL	0/1:26,25:51:99:401,0,500
chr1	20834605	.	A	AC	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.85;ReadPosRankSum=0;SOR=0.061	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,3:8:67:0|1:20834605_A_AC:67,0,201
chr1	20915589	.	TC	T	1474.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.7;ClippingRankSum=0;DP=128;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.1;QD=11.7;ReadPosRankSum=0.208;SOR=1.035	GT:AD:DP:GQ:PL	0/1:68,58:126:99:1503,0,2036
chr1	20931601	.	T	TATTC	672.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.69;ReadPosRankSum=-1.964;SOR=0.202	GT:AD:DP:GQ:PL	0/1:18,18:36:99:701,0,884
chr1	20971980	.	C	CAA,CAAA	974.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=2.436;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.9;MQRankSum=-0.353;QD=24.37;ReadPosRankSum=1.69;SOR=0.368	GT:AD:DP:GQ:PL	1/2:4,20,16:54:99:1003,145,216,192,0,356
chr1	21039909	.	CT	C	1032.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.22;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=2.74;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.95;QD=10.65;ReadPosRankSum=2.24;SOR=1.136	GT:AD:DP:GQ:PL	0/1:63,34:97:99:1061,0,2136
chr1	21083851	.	C	CTATTAT	20	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr1	21102502	.	C	CA,CAA	430.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=3.9;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.29;MQRankSum=0.392;QD=20.51;ReadPosRankSum=0.9;SOR=0.97	GT:AD:DP:GQ:PL	1/2:1,11,9:27:99:459,184,150,147,0,162
chr1	21106204	.	G	GA,GAA	1080.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.735;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=24.56;ReadPosRankSum=0.076;SOR=3.193	GT:AD:DP:GQ:PL	1/2:5,16,23:63:99:1109,528,505,175,0,235
chr1	21139891	.	TAA	T	61.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
chr1	21151744	.	G	GA	218.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.511;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.841;SOR=2.376	GT:AD:DP:GQ:PL	0/1:8,13:33:99:247,0,119
chr1	21151905	.	AG	A	117.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=29.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
chr1	21154380	.	G	GT	13.95	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.79;ReadPosRankSum=-1.645;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:42:42,0,66
chr1	21328034	.	TA	T	97.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=2.45;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:99:126,0,121
chr1	21377295	.	AG	A	1138.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.11;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1;QD=16.75;ReadPosRankSum=-0.622;SOR=1.306	GT:AD:DP:GQ:PL	0/1:33,35:68:99:1167,0,1077
chr1	21377577	.	TCCTA	T	277.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=-0.094;SOR=0.197	GT:AD:DP:GQ:PL	0/1:10,8:18:99:306,0,588
chr1	21502724	.	TGCCGCCGCC	T,TGCCGCC	797.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=4.393;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.98;MQRankSum=0.53;QD=28.97;SOR=1.326	GT:AD:DP:GQ:PL	1/2:1,12,9:22:99:826,342,545,463,0,440
chr1	21584278	.	G	GC	23.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.93;ReadPosRankSum=-0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:1:49,0,1
chr1	21795432	.	G	GA	1115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.39;ClippingRankSum=0;DP=111;ExcessHet=3.0103;FS=7.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.024;SOR=1.883	GT:AD:DP:GQ:PL	0/1:67,36:103:99:1144,0,2390
chr1	21807367	.	TA	T	115.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.29;QD=28.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr1	21807880	.	CCTCTGTCT	C	20	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=47;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr1	21929456	.	GC	G	193.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=1.86;SOR=0.693	GT:AD:DP:GQ:PL	0/1:9,9:18:99:222,0,221
chr1	22016678	.	T	TA	141.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.7;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.25;ReadPosRankSum=0.401;SOR=3.767	GT:AD:DP:GQ:PL	0/1:1,6:13:15:139,0,15
chr1	22032472	.	A	AT	805.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=32.23;SOR=1.893	GT:AD:DP:GQ:PL	1/1:0,25:25:75:834,75,0
chr1	22082967	.	C	CA	406.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.63;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.78;ReadPosRankSum=1.41;SOR=1.082	GT:AD:DP:GQ:PL	0/1:33,27:93:99:435,0,567
chr1	22190826	.	G	GC	80.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.328;SOR=0.223	GT:AD:DP:GQ:PL	0/1:3,4:7:77:109,0,77
chr1	22207804	.	ACCCAGGGTGGCAG	A	1435.77	PASS	AC=2;AF=1;AN=2;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.63;QD=34.38;SOR=1.244	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1464,102,0
chr1	22213624	.	G	GGGCGGGGCAGGAGTGGAA	584.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.05;ReadPosRankSum=-1.416;SOR=3.014	GT:AD:DP:GQ:PL	0/1:5,10:15:99:613,0,681
chr1	22307763	.	G	GTAGGGACATAGGGACA	690.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.64;QD=29.62;SOR=5.67	GT:AD:DP:GQ:PL	1/1:0,16:16:47:719,47,0
chr1	22310041	.	A	AATG	259.8	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.3;QD=35.11;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:21:288,21,0
chr1	22328101	.	C	CT	1576.77	PASS	AC=2;AF=1;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.94;QD=28.22;SOR=3.126	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,32:32:99:1|1:22328092_A_G:1605,108,0
chr1	22333209	.	CAAT	C	241.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=29.52;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	22405379	.	CTT	C,CT	2112.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DP=228;ExcessHet=3.0103;FS=2.702;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;MQRankSum=0.618;QD=12.8;ReadPosRankSum=2.26;SOR=0.994	GT:AD:DP:GQ:PL	1/2:29,37,99:187:99:2141,1154,2170,137,0,343
chr1	22447645	.	C	CTG	1540.77	PASS	AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=28.52;SOR=7.168	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1569,105,0
chr1	22837586	.	CT	C	352.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=0.152;SOR=0.307	GT:AD:DP:GQ:PL	0/1:22,20:58:99:381,0,392
chr1	22913273	.	T	TGGG	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0;QD=10.46;ReadPosRankSum=0.598;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:91:91,0,163
chr1	22913274	.	G	GGGGT	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0;QD=5.97;ReadPosRankSum=0;SOR=0.495	GT:AD:DP:GQ:PL	0/1:4,3:7:70:70,0,118
chr1	22974379	.	CCCACCAGATGGACTTCT	C	434.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.12;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.72;ReadPosRankSum=0.412;SOR=1.493	GT:AD:DP:GQ:PL	0/1:14,12:26:99:463,0,613
chr1	22985785	.	A	AGATGGATG	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=0;QD=24.68;ReadPosRankSum=-2.189;SOR=0.223	GT:AD:DP:GQ:PL	0/1:3,4:7:99:201,0,101
chr1	22985839	.	AGATG	A	307.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=0.608;SOR=0.086	GT:AD:DP:GQ:PL	0/1:14,9:23:99:336,0,550
chr1	23107811	.	TAA	T,TA	349.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.942;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.05;MQRankSum=0.081;QD=14.57;ReadPosRankSum=0.896;SOR=2.448	GT:AD:DP:GQ:PL	1/2:3,8,13:29:88:378,155,298,88,0,102
chr1	23381795	.	A	AT	605.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,15:15:48:634,48,0
chr1	23664147	.	C	CA	76.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.372;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.04;ReadPosRankSum=1.13;SOR=0.54	GT:AD:DP:GQ:PL	0/1:12,7:22:99:105,0,236
chr1	23758498	.	T	TA	76.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.5;MQ=57.53;MQRankSum=-0.308;QD=7.68;ReadPosRankSum=-0.755;SOR=3.383	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,7:10:31:0|1:23758498_T_TA:105,0,31
chr1	23956161	.	AAATAATAAT	A,AAAT	1086.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.41;QD=34.42;SOR=6.666	GT:AD:DP:GQ:PL	1/2:0,4,23:27:85:1115,906,892,161,0,85
chr1	24106510	.	A	AT	2399.77	PASS	AC=2;AF=1;AN=2;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=30;SOR=3.373	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2428,243,0
chr1	24172765	.	C	CT	68.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.25;ReadPosRankSum=0.175;SOR=0.892	GT:AD:DP:GQ:PL	0/1:5,6:11:77:97,0,77
chr1	24288529	.	TAAAC	T	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.12;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	24294450	.	C	CA	1397.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=4.617;MLEAC=1;MLEAF=0.5;MQ=40.76;MQRankSum=-7.444;QD=13.98;ReadPosRankSum=-1.058;SOR=1.463	GT:AD:DP:GQ:PL	0/1:34,66:123:99:1426,0,336
chr1	24389509	.	GAA	G	1547.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.19;QD=23.1;ReadPosRankSum=0.026;SOR=0.195	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1576,0,1063
chr1	24397473	.	G	GC	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.35;ReadPosRankSum=-0.524;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,97
chr1	24401566	.	AAAAAG	A	92.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=30.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	24464006	.	CTT	C	16.86	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.81;ReadPosRankSum=1.83;SOR=0.039	GT:AD:DP:GQ:PL	0/1:4,2:6:45:45,0,117
chr1	24486216	.	GT	G	191.78	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.31;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:27:220,27,0
chr1	24671464	.	ACCCTCCACACCTGTGCC	A	558.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=-2.106;SOR=0.836	GT:AD:DP:GQ:PL	0/1:22,16:38:99:587,0,809
chr1	24718318	.	T	TA	98.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.98;MQRankSum=0.524;QD=9.88;ReadPosRankSum=0;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,6:10:65:127,0,65
chr1	24780521	.	C	CT	56.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=2.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.03;ReadPosRankSum=-0.931;SOR=1.492	GT:AD:DP:GQ:PL	0/1:3,4:13:67:79,0,67
chr1	24978892	.	CAA	C	138.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=3.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.3;ReadPosRankSum=0.589;SOR=0.235	GT:AD:DP:GQ:PL	0/1:11,8:28:99:167,0,406
chr1	25124053	.	G	GAA	30.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.7;ReadPosRankSum=-0.319;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:21:59,0,21
chr1	25678002	.	TA	T	543.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.65;MQRankSum=0.394;QD=20.14;SOR=2.584	GT:AD:DP:GQ:PL	1/1:1,26:31:55:572,55,0
chr1	25697212	.	C	CTATTT	62.56	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.95;QD=27.66;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:6:89,6,0
chr1	25780929	.	ATG	A	171.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.09;MQRankSum=-1.162;QD=10.74;ReadPosRankSum=0.373;SOR=0.317	GT:AD:DP:GQ:PL	0/1:8,8:19:99:200,0,159
chr1	25780976	.	TATA	T	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.96;MQRankSum=0.941;QD=2.67;ReadPosRankSum=-0.085;SOR=0.124	GT:AD:DP:GQ:PL	0/1:10,3:13:63:63,0,259
chr1	25780978	.	TA	T	85.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.79;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.96;MQRankSum=-0.243;QD=6.6;ReadPosRankSum=1.05;SOR=0.836	GT:AD:DP:GQ:PL	0/1:6,7:13:99:114,0,138
chr1	25889342	.	CAG	C	781.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,18:18:54:810,54,0
chr1	26085048	.	AG	A	1784.77	PASS	AC=2;AF=1;AN=2;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=29.75;SOR=3.841	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1813,181,0
chr1	26149356	.	GCT	G	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,89
chr1	26227608	.	C	CA	65.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=0.793;QD=4.7;ReadPosRankSum=0.282;SOR=0.144	GT:AD:DP:GQ:PL	0/1:6,8:19:94:94,0,112
chr1	26231350	.	C	CT	65.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.598;SOR=0.132	GT:AD:DP:GQ:PL	0/1:3,3:6:94:94,0,94
chr1	26349109	.	C	CT	1033.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=1.11;SOR=1.034	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1062,0,832
chr1	26358752	.	T	TA	339.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=2.494	GT:AD:DP:GQ:PL	1/1:0,11:11:33:368,33,0
chr1	26515529	.	ACCAGACT	A	483.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.83;QD=31.48;SOR=2.67	GT:AD:DP:GQ:PL	1/1:0,12:12:36:512,36,0
chr1	26528181	.	C	CTT	446.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.718;QD=15.41;ReadPosRankSum=0.437;SOR=1.101	GT:AD:DP:GQ:PL	0/1:16,13:51:99:475,0,399
chr1	26570482	.	CAAAAAAAAA	C	164.9	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.72;QD=32.98;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:193,15,0
chr1	26596273	.	C	CTT	71.98	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.26;QD=17.99;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:13:100,13,0
chr1	26620846	.	C	CA	2847.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.7;MQRankSum=0.318;QD=34.62;ReadPosRankSum=-1.574;SOR=1.022	GT:AD:DP:GQ:PL	1/1:1,75:76:99:2876,222,0
chr1	26646611	.	TA	T	118.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.22;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=6.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.53;ReadPosRankSum=0.815;SOR=2.005	GT:AD:DP:GQ:PL	0/1:34,13:55:99:147,0,714
chr1	26671522	.	GAAATGAGGCATCA	G	5744.77	PASS	AC=2;AF=1;AN=2;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.15;QD=28.01;SOR=0.985	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,138:138:99:1|1:26671522_GAAATGAGGCATCA_G:5773,420,0
chr1	26671538	.	AGCAC	A	5775.77	PASS	AC=2;AF=1;AN=2;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.23;QD=26.06;SOR=0.962	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,132:132:99:1|1:26671522_GAAATGAGGCATCA_G:5804,421,0
chr1	26671544	.	GGGGCCCTTCACGACCTCTTTCCAGGTGGGGAACA	G	3820.77	PASS	AC=2;AF=1;AN=2;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.3;QD=30.4;SOR=1.124	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,81:81:99:1|1:26671522_GAAATGAGGCATCA_G:3849,261,0
chr1	26769543	.	C	CTTTTTT	690.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.04;SOR=3.383	GT:AD:DP:GQ:PL	1/1:0,15:17:51:717,51,0
chr1	26784056	.	TA	T	77.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.22;MQRankSum=-0.365;QD=7.09;ReadPosRankSum=-0.34;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,8:13:48:106,0,48
chr1	26881565	.	AG	A	433.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.305;SOR=1.329	GT:AD:DP:GQ:PL	0/1:24,17:41:99:462,0,683
chr1	27210530	.	CA	C	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.65;MQRankSum=1.24;QD=3.85;ReadPosRankSum=-1.1;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:37:59,0,37
chr1	27237460	.	G	GT	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.47;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.82;ReadPosRankSum=-1.465;SOR=0.892	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,2:7:69:0|1:27237460_G_GT:69,0,558
chr1	27237463	.	AGG	A	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.82;ReadPosRankSum=-1.465;SOR=0.892	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,2:7:69:0|1:27237460_G_GT:69,0,558
chr1	27661755	.	T	TGTA	570.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.1;QD=19.68;ReadPosRankSum=0.983;SOR=0.631	GT:AD:DP:GQ:PL	0/1:15,14:29:99:599,0,583
chr1	27755044	.	AG	A	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.3;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,2:6:48:48,0,104
chr1	27755511	.	CT	C	71.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.861;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=1.13;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,5:14:70:81,0,70
chr1	27875352	.	AAGG	A	97.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.48;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.04;ReadPosRankSum=-0.511;SOR=0.556	GT:AD:DP:GQ:PL	0/1:42,6:48:99:126,0,1809
chr1	27993138	.	A	ATTTTTACC	331.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	27995516	.	CCGCA	C	3299.77	PASS	AC=2;AF=1;AN=2;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.54;QD=29.09;SOR=0.892	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,75:75:99:1|1:27995516_CCGCA_C:3328,230,0
chr1	27995521	.	TCCTTACCC	T	3331.77	PASS	AC=2;AF=1;AN=2;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.22;QD=24.17;SOR=0.859	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,76:76:99:1|1:27995516_CCGCA_C:3360,232,0
chr1	27995541	.	TGCATCCTTACCTGCATCCTTACCC	T	2986.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.01;QD=29.18;SOR=1.214	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,64:64:99:1|1:27995516_CCGCA_C:3015,206,0
chr1	28223824	.	A	AT	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.96;ReadPosRankSum=-1.645;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:53:53,0,92
chr1	28223981	.	TA	T	71.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.18;QD=10.22;ReadPosRankSum=0.366;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,6:7:3:98,0,3
chr1	28261658	.	T	TG	977.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.555;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.52;ReadPosRankSum=1.85;SOR=0.275	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1006,0,961
chr1	28268833	.	C	CG	2052.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=8.01;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.35;QD=20.95;ReadPosRankSum=1.88;SOR=0.419	GT:AD:DP:GQ:PGT:PID:PL	0/1:46,52:98:99:0|1:28268833_C_CG:2081,0,2424
chr1	28323718	.	TG	T	1748.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DP=111;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.19;ReadPosRankSum=-0.114;SOR=0.423	GT:AD:DP:GQ:PL	0/1:56,52:108:99:1777,0,1938
chr1	28817355	.	C	CA	20.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.6;ReadPosRankSum=0.135;SOR=0.307	GT:AD:DP:GQ:PL	0/1:5,3:8:49:49,0,89
chr1	29016715	.	GTT	G	87.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.604;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.02;QD=3.25;ReadPosRankSum=-1.546;SOR=0.096	GT:AD:DP:GQ:PL	0/1:21,6:43:99:116,0,771
chr1	29018316	.	TTTTA	T,TTTTATTTA	551.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=34.49;ReadPosRankSum=-0.109;SOR=2.712	GT:AD:DP:GQ:PL	1/2:1,9,6:16:99:580,208,220,335,0,364
chr1	29023674	.	CATATATATATATAT	C	353.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=29.31;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,5:11:28:275,28,0
chr1	29070609	.	A	AG	39.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.383;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,68
chr1	29320169	.	C	CT	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.682;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.5;MQ=59.53;MQRankSum=0.431;QD=2.07;ReadPosRankSum=0.163;SOR=0.169	GT:AD:DP:GQ:PL	0/1:8,4:12:53:53,0,99
chr1	29338634	.	AT	A	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=-1.282;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,4:6:31:75,0,31
chr1	29345009	.	C	CTT	4312.77	PASS	AC=2;AF=1;AN=2;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=31.48;SOR=4.129	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,95:95:99:1|1:29345009_C_CTT:4341,292,0
chr1	29631236	.	C	CTA	1173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.63;ReadPosRankSum=-1.894;SOR=0.457	GT:AD:DP:GQ:PL	0/1:33,30:63:99:1202,0,1374
chr1	29633491	.	T	TCAGCC	456.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.23;ReadPosRankSum=-0.705;SOR=0.223	GT:AD:DP:GQ:PL	0/1:20,10:30:99:485,0,787
chr1	31194826	.	CCTTGGGCCATTTG	C	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.29;ReadPosRankSum=0;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,4:6:99:162,0,142
chr1	31406286	.	TAC	T	154.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;QD=27.11;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,4:6:18:145,18,0
chr1	31409726	.	CCT	C	1235.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=5.394;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.38;QD=19.62;ReadPosRankSum=0.268;SOR=1.742	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1264,0,1287
chr1	31415039	.	TA	T	499.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.3;ReadPosRankSum=1.81;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,14:19:99:528,0,239
chr1	31415041	.	TATATATATATATATA	T	346.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.31;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=34.68;ReadPosRankSum=3.14;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,5:15:99:375,0,261
chr1	31446069	.	TG	T	126.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.224;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.22;SOR=1.371	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,5:12:99:0|1:31446069_TG_T:155,0,312
chr1	31478638	.	AAGAGAG	A	758.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.39;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.32;QD=17.24;ReadPosRankSum=1.07;SOR=0.704	GT:AD:DP:GQ:PL	0/1:24,20:57:99:787,0,1721
chr1	31733721	.	A	AAAG	353.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.33;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.08;MQRankSum=1.35;QD=20.81;ReadPosRankSum=-1.858;SOR=0.33	GT:AD:DP:GQ:PL	0/1:7,10:17:99:382,0,248
chr1	31744505	.	A	AT	85.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=0.21;SOR=0.368	GT:AD:DP:GQ:PL	0/1:1,5:6:5:113,0,5
chr1	31764713	.	C	CAAG	1918.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.48;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.19;ReadPosRankSum=0.406;SOR=0.819	GT:AD:DP:GQ:PL	0/1:55,45:100:99:1947,0,2311
chr1	31838909	.	ATGTGTGTGTG	A	233.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.55;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.717;QD=19.49;ReadPosRankSum=-1.3;SOR=1.981	GT:AD:DP:GQ:PL	0/1:5,7:19:99:262,0,287
chr1	31882582	.	G	GGCCTCA	657.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.41;ReadPosRankSum=-0.597;SOR=0.42	GT:AD:DP:GQ:PL	0/1:9,15:24:99:686,0,669
chr1	31905889	.	A	ACAG	6144.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.08;ClippingRankSum=0;DP=183;ExcessHet=3.0103;FS=6.874;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.761;QD=32.38;ReadPosRankSum=0.636;SOR=0.903	GT:AD:DP:GQ:PL	0/1:11,142:153:0:6170,0,0
chr1	32045664	.	CTGTGTG	C	108.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	32045790	.	CTCTCTCTCTCTCTCTCTCTCTCTG	C	53.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=-0.212;QD=3.16;ReadPosRankSum=-1.981;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:13,4:17:82:0|1:32045790_CTCTCTCTCTCTCTCTCTCTCTCTG_C:82,0,458
chr1	32045814	.	GTCTCTCTCTCTCTGTCTCTCTCTGTCTC	G	258.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.724;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.51;QD=10.78;ReadPosRankSum=0.881;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:15,9:24:99:1|0:32045790_CTCTCTCTCTCTCTCTCTCTCTCTG_C:287,0,597
chr1	32088897	.	CAA	C	59.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:32088897_CAA_C:86,6,0
chr1	32100551	.	GA	G	1333.77	PASS	AC=2;AF=1;AN=2;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=28.38;SOR=3.306	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1362,141,0
chr1	32119347	.	AACAC	A	651.89	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.873;QD=29.63;ReadPosRankSum=-0.678;SOR=0.61	GT:AD:DP:GQ:PL	0/1:6,16:34:99:676,0,194
chr1	32120572	.	CTT	C	201.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=0.14;QD=33.63;ReadPosRankSum=0;SOR=3.056	GT:AD:DP:GQ:PL	1/1:1,5:9:1:184,1,0
chr1	32194000	.	C	CAAGA	423.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.11;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=1.95;QD=11.77;ReadPosRankSum=-1.22;SOR=1.222	GT:AD:DP:GQ:PL	0/1:23,13:36:99:452,0,1310
chr1	32258805	.	AAG	A	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=2;QD=2.43;ReadPosRankSum=-0.425;SOR=0.368	GT:AD:DP:GQ:PL	0/1:14,4:18:72:72,0,447
chr1	32541440	.	GGT	G	171.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.37;ReadPosRankSum=2.8;SOR=0.255	GT:AD:DP:GQ:PL	0/1:40,11:54:99:200,0,1311
chr1	32658062	.	G	GGT	493.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.43;ReadPosRankSum=-0.049;SOR=2.049	GT:AD:DP:GQ:PL	0/1:5,13:18:99:522,0,154
chr1	32659127	.	TTTG	T	27.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.674;QD=6.94;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:56:56,0,76
chr1	32680654	.	GA	G	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.63;ReadPosRankSum=0.462;SOR=0.765	GT:AD:DP:GQ:PL	0/1:13,9:27:99:108,0,298
chr1	32680711	.	TA	T	58.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.366;SOR=0.527	GT:AD:DP:GQ:PL	0/1:1,4:7:26:59,0,26
chr1	33060834	.	AT	A	697.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.86;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.958;QD=10.41;ReadPosRankSum=-0.736;SOR=0.317	GT:AD:DP:GQ:PL	0/1:31,36:67:99:726,0,651
chr1	33293384	.	GT	G	18.83	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=58.83;MQRankSum=0;QD=2.69;ReadPosRankSum=-1.368;SOR=1.492	GT:AD:DP:GQ:PL	0/1:3,4:7:39:47,0,39
chr1	33318868	.	C	CATTTGAGGTCAGGA	788.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.86;QD=29.78;SOR=3.383	GT:AD:DP:GQ:PL	1/1:0,17:17:56:817,56,0
chr1	33402334	.	GAA	G	72.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.099;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=4.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.51;ReadPosRankSum=-0.458;SOR=0.139	GT:AD:DP:GQ:PL	0/1:22,7:41:99:101,0,814
chr1	33403741	.	C	CA	22.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.85;ReadPosRankSum=0;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:30:51,0,30
chr1	33415572	.	C	CT	15.12	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.04;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:14:43,0,14
chr1	33476223	.	TAC	T	108.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.5;MQ=52.82;MQRankSum=-1.354;QD=9.89;ReadPosRankSum=-0.886;SOR=0.027	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,3:11:99:0|1:33476223_TAC_T:137,0,324
chr1	33485789	.	A	AACAC	435.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.818;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0.516;QD=31.69;ReadPosRankSum=-1.087;SOR=0.61	GT:AD:DP:GQ:PL	0/1:1,7:16:7:388,0,7
chr1	33796834	.	GA	G	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=-1.158;SOR=2.179	GT:AD:DP:GQ:PL	0/1:5,6:11:99:192,0,154
chr1	33954469	.	AG	A	458.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.8;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,13:13:39:487,39,0
chr1	34023217	.	GACAC	G,GAC	517.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=30.46;SOR=5.784	GT:AD:DP:GQ:PL	1/2:0,10,7:17:99:546,173,143,240,0,192
chr1	34033022	.	AG	A	281.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.03;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:310,24,0
chr1	34033060	.	GA	G	387.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.54;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,18:18:53:416,53,0
chr1	34033078	.	CAT	C	61.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.999;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.43;ReadPosRankSum=1.74;SOR=0.693	GT:AD:DP:GQ:PL	0/1:14,4:20:90:90,0,474
chr1	34043169	.	TC	T	407.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=2.985	GT:AD:DP:GQ:PL	1/1:0,14:14:42:436,42,0
chr1	34046718	.	A	AG	113.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.25;ReadPosRankSum=0;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:44:142,0,44
chr1	34189957	.	AG	A	828.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=33.15;SOR=1.358	GT:AD:DP:GQ:PL	1/1:0,25:25:75:857,75,0
chr1	34254108	.	C	CA	201.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.59;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-0.213;SOR=2.737	GT:AD:DP:GQ:PL	0/1:4,13:22:35:230,0,35
chr1	34276210	.	T	TA	188.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.98;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:217,27,0
chr1	34286166	.	CA	C	410.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.505;QD=22.82;ReadPosRankSum=-1.884;SOR=1.556	GT:AD:DP:GQ:PL	0/1:6,12:38:18:283,0,18
chr1	34631200	.	AAC	A	154.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.194;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=1.94;SOR=0.169	GT:AD:DP:GQ:PL	0/1:6,6:12:99:183,0,175
chr1	35184170	.	G	GT	193.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.54;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.76;SOR=1.085	GT:AD:DP:GQ:PGT:PID:PL	0/1:10,6:16:99:0|1:35184170_G_GT:222,0,389
chr1	35321684	.	A	AT,ATT	634.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.01;MQRankSum=-0.912;QD=16.28;ReadPosRankSum=0.417;SOR=0.859	GT:AD:DP:GQ:PL	1/2:5,26,8:43:73:663,73,79,375,0,495
chr1	35485261	.	GTC	G	39.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.84;ReadPosRankSum=-0.391;SOR=0.072	GT:AD:DP:GQ:PL	0/1:11,3:14:68:68,0,350
chr1	35836328	.	CT	C	111.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.63;ReadPosRankSum=0.993;SOR=2.448	GT:AD:DP:GQ:PL	0/1:1,5:14:32:32,0,61
chr1	36019913	.	T	TA	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.07;ReadPosRankSum=0.534;SOR=0.446	GT:AD:DP:GQ:PL	0/1:18,6:24:78:78,0,336
chr1	36032230	.	C	CCACACACA	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.89;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,1:2:60:60,0,77
chr1	36102192	.	G	GA	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.07;ReadPosRankSum=0.767;SOR=0.204	GT:AD:DP:GQ:PL	0/1:7,4:13:62:62,0,142
chr1	36203715	.	ATAT	AAT,A	1638.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=29.9;ReadPosRankSum=1.6;SOR=3.003	GT:AD:DP:GQ:PL	1/2:1,25,12:38:99:1667,234,129,643,0,593
chr1	36203717	.	ATATAT	A	284.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=2.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.035;SOR=2.066	GT:AD:DP:GQ:PL	0/1:13,9:34:99:313,0,527
chr1	36204401	.	CT	C	16.98	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.24;ReadPosRankSum=0.319;SOR=0.916	GT:AD:DP:GQ:PL	1/1:1,3:4:1:42,1,0
chr1	36215601	.	A	AT	119.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.97;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:148,18,0
chr1	36307412	.	CAT	C	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.674;QD=6.44;ReadPosRankSum=0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:50:54,0,50
chr1	36316418	.	C	CA	861.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.55;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=3.667;MLEAC=2;MLEAF=1;MQ=60.49;MQRankSum=0.463;QD=22.1;ReadPosRankSum=-1.613;SOR=2.441	GT:AD:DP:GQ:PL	1/1:3,36:42:53:890,53,0
chr1	36372409	.	G	GA	129.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=3.1;MLEAC=1;MLEAF=0.5;MQ=60.62;MQRankSum=1.49;QD=3.6;ReadPosRankSum=-1.522;SOR=0.193	GT:AD:DP:GQ:PL	0/1:25,11:49:99:158,0,459
chr1	36501633	.	CA	C	134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.99;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=6.69;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-0.348;QD=12.25;ReadPosRankSum=0.935;SOR=4.174	GT:AD:DP:GQ:PL	0/1:3,8:14:24:124,0,24
chr1	36747997	.	AT	A	40.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:67,9,0
chr1	36784499	.	AAATAATAAT	A	93.18	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	36884363	.	CA	C	247.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=34.07;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,5:8:27:236,27,0
chr1	36884527	.	C	CA	493.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0;DP=187;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.5;MQ=61.66;MQRankSum=8.23;QD=3.21;ReadPosRankSum=-0.967;SOR=0.991	GT:AD:DP:GQ:PL	0/1:113,41:171:99:522,0,4307
chr1	36888302	.	C	CT	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.52;ReadPosRankSum=-0.071;SOR=1.179	GT:AD:DP:GQ:PL	0/1:27,11:53:99:162,0,551
chr1	36945307	.	AG	A	33.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:27:62,0,27
chr1	38155141	.	G	GGT	364.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:27:393,27,0
chr1	38167709	.	CTTTT	C	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,78
chr1	38185369	.	GAC	G	61.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.72;ReadPosRankSum=-0.414;SOR=2.303	GT:AD:DP:GQ:PL	0/1:5,3:8:90:90,0,166
chr1	38187802	.	CA	C	805.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.237;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.623;QD=7.19;ReadPosRankSum=1.38;SOR=0.365	GT:AD:DP:GQ:PL	0/1:62,50:118:99:834,0,1348
chr1	38292296	.	C	CT	208.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.26;ReadPosRankSum=-0.61;SOR=0.711	GT:AD:DP:GQ:PL	0/1:34,15:57:99:237,0,643
chr1	38304469	.	CT	C	233.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.08;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.97;ReadPosRankSum=-0.535;SOR=1.493	GT:AD:DP:GQ:PL	0/1:30,17:70:99:262,0,505
chr1	38332074	.	TCTCTCACA	T	327.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.95;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=14.819;MLEAC=1;MLEAF=0.5;MQ=61.94;MQRankSum=0;QD=23.41;ReadPosRankSum=1.17;SOR=4.973	GT:AD:DP:GQ:PL	0/1:3,11:14:29:356,0,29
chr1	38356899	.	C	CA	108.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=3.912;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=0.32;QD=5.18;ReadPosRankSum=0.942;SOR=2.348	GT:AD:DP:GQ:PL	0/1:13,8:32:99:137,0,255
chr1	38425629	.	CAA	C	139.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=0;QD=15.55;ReadPosRankSum=-0.66;SOR=2.494	GT:AD:DP:GQ:PL	0/1:2,7:11:51:155,0,51
chr1	38446513	.	CTT	C	120.77	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=29.44;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,3:5:15:126,15,0
chr1	38484665	.	G	GT	346.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.234;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=-0.562;SOR=1.022	GT:AD:DP:GQ:PL	0/1:18,21:56:99:375,0,365
chr1	38511083	.	TGTG	T	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.652;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.08;ReadPosRankSum=0.81;SOR=1.179	GT:AD:DP:GQ:PL	0/1:18,3:21:72:72,0,737
chr1	39305002	.	ATT	A	17.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.97;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,2:6:46:46,0,84
chr1	39333118	.	CA	C	86.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.138;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=0.754;QD=6.68;ReadPosRankSum=0.915;SOR=0.368	GT:AD:DP:GQ:PL	0/1:4,9:15:72:115,0,72
chr1	39340001	.	T	TA	31.29	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=10.43;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:8:58,8,0
chr1	39377274	.	CTGTGTGTGTGTGTGTGTG	C	64.56	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.92;QD=32.28;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:39377274_CTGTGTGTGTGTGTGTGTG_C:91,6,0
chr1	39494666	.	C	CT	175.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.1;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=1.13;SOR=0.507	GT:AD:DP:GQ:PL	0/1:3,9:18:33:203,0,33
chr1	39766179	.	T	TA	60.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.01;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:88,12,0
chr1	39823032	.	A	AT	1895.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.963;QD=10.59;ReadPosRankSum=0.859;SOR=0.711	GT:AD:DP:GQ:PL	0/1:88,91:185:99:1924,0,1593
chr1	39826343	.	T	TATA	228.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.33;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.25;ReadPosRankSum=-0.114;SOR=2.066	GT:AD:DP:GQ:PL	0/1:9,6:15:99:257,0,347
chr1	39826391	.	A	ATTAT	603.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=1.7;QD=17.25;ReadPosRankSum=-0.901;SOR=0.876	GT:AD:DP:GQ:PL	0/1:20,15:35:99:632,0,896
chr1	39900058	.	CT	C	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.1;QD=6.42;ReadPosRankSum=-0.388;SOR=0.287	GT:AD:DP:GQ:PL	0/1:27,20:74:99:330,0,540
chr1	39927463	.	CA	C	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.581;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.57;MQRankSum=-0.942;QD=7.43;ReadPosRankSum=1.82;SOR=0.61	GT:AD:DP:GQ:PL	0/1:7,11:30:99:162,0,110
chr1	39930581	.	CA	C	83.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.41;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0.061;QD=4.93;ReadPosRankSum=0.674;SOR=2.303	GT:AD:DP:GQ:PL	0/1:10,7:24:99:112,0,208
chr1	39945749	.	T	TAGCCTCTGAAAGACTCCAGTGAGGAGAAGAAATAAAAATG	2840.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.58;ReadPosRankSum=-6.109;SOR=1.081	GT:AD:DP:GQ:PL	0/1:43,60:103:99:2869,0,2809
chr1	40041371	.	G	GA	271.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.66;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=0;QD=7.76;ReadPosRankSum=-0.435;SOR=0.85	GT:AD:DP:GQ:PL	0/1:23,12:35:99:300,0,712
chr1	40041699	.	T	TCGGAGC	160.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=1.43;QD=13.4;ReadPosRankSum=-1.616;SOR=0.446	GT:AD:DP:GQ:PL	0/1:7,5:12:99:189,0,279
chr1	40137790	.	G	GGCGAGTCCCGGCGAGGGAA	587.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;QD=34.55;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,13:13:41:616,41,0
chr1	40204802	.	ACTT	A	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=-0.431;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:45:81,0,45
chr1	40229297	.	A	AC	1776.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.99;QD=31.81;SOR=3.657	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1805,153,0
chr1	40253768	.	C	CA	1444.77	PASS	AC=2;AF=1;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.3;QD=34.15;SOR=1.284	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,32:32:99:1|1:40253768_C_CA:1473,99,0
chr1	40536074	.	C	CT	6865.77	PASS	AC=2;AF=1;AN=2;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=24.93;SOR=1.555	GT:AD:DP:GQ:PL	1/1:0,171:171:99:6894,520,0
chr1	40559441	.	C	CA	173.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	40559555	.	CA	C	138.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.82;ReadPosRankSum=-1.265;SOR=0.223	GT:AD:DP:GQ:PL	1/1:1,6:11:11:139,11,0
chr1	40661121	.	TA	T	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.3;ReadPosRankSum=-1.96;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:41:48,0,41
chr1	40768483	.	T	TGGAG	156.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.001;SOR=0.765	GT:AD:DP:GQ:PL	0/1:8,5:13:99:185,0,398
chr1	40769434	.	T	TGGGGCCGGGAGAAGGGAGG	195.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=63.17;MQRankSum=2.13;QD=19.58;ReadPosRankSum=-1.465;SOR=0.078	GT:AD:DP:GQ:PL	0/1:6,4:10:99:224,0,984
chr1	40777132	.	GC	G	1127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.211;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.31;QD=14.1;ReadPosRankSum=-0.286;SOR=0.705	GT:AD:DP:GQ:PL	0/1:36,44:80:99:1156,0,894
chr1	40777884	.	C	CT	105.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.041;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.05;ReadPosRankSum=2;SOR=0.215	GT:AD:DP:GQ:PL	0/1:8,7:21:99:134,0,143
chr1	40781175	.	CG	C	181.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-0.083;SOR=0.197	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,6:20:99:0|1:40781175_CG_C:210,0,866
chr1	40947303	.	CTT	C	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=-1.831;SOR=0.551	GT:AD:DP:GQ:PL	0/1:6,5:11:99:192,0,240
chr1	41091997	.	TAC	T	26.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.83;ReadPosRankSum=0;SOR=0.148	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,2:7:55:0|1:41091997_TAC_T:55,0,190
chr1	41107769	.	CA	C	241.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.18;ReadPosRankSum=-1.221;SOR=0.473	GT:AD:DP:GQ:PL	0/1:2,8:10:45:270,0,45
chr1	41298546	.	G	GC	524.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=2.712	GT:AD:DP:GQ:PL	1/1:0,17:17:51:553,51,0
chr1	41449291	.	CT	C	114.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.95;ReadPosRankSum=1.59;SOR=3.056	GT:AD:DP:GQ:PL	0/1:1,4:9:1:87,0,1
chr1	41453286	.	GT	G	1159.77	PASS	AC=2;AF=1;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.67;QD=35.34;SOR=6.994	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1188,96,0
chr1	41582429	.	T	TA	102.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.608;SOR=1.329	GT:AD:DP:GQ:PL	0/1:6,4:10:99:131,0,181
chr1	42880841	.	T	TCA	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.73;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	43301021	.	GCC	G	135.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr1	43393245	.	G	GGGTGAGAAAT	852.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.2;QD=17.4;ReadPosRankSum=-0.89;SOR=1.218	GT:AD:DP:GQ:PL	0/1:28,21:49:99:881,0,2982
chr1	43613850	.	C	CA	131.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.232;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=0.808;SOR=0.693	GT:AD:DP:GQ:PL	0/1:7,7:14:99:160,0,151
chr1	43664319	.	TA	T	2277.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;MQRankSum=0.218;QD=23.48;ReadPosRankSum=-1.572;SOR=1.569	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2306,264,0
chr1	43665255	.	AAG	A	1165.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=32.79;SOR=3.841	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1194,87,0
chr1	43680839	.	T	TG	2312.77	PASS	AC=2;AF=1;AN=2;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=28.26;SOR=5.67	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,52:52:99:1|1:43680839_T_TG:2341,159,0
chr1	43771016	.	TA	T	1614.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.428;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.23;ReadPosRankSum=1.45;SOR=0.902	GT:AD:DP:GQ:PL	0/1:51,55:106:99:1643,0,1398
chr1	43919532	.	C	CGGGCGG	211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.98;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.25;ReadPosRankSum=-0.366;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,5:7:99:240,0,133
chr1	44451114	.	GA	G	197.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=3.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=-1.304;SOR=0.124	GT:AD:DP:GQ:PL	0/1:10,13:23:99:226,0,202
chr1	44457739	.	T	TC	233.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.4;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr1	44483040	.	AAC	A	89.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:117,12,0
chr1	44595995	.	G	GC	148.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.615;QD=11.44;ReadPosRankSum=-1.559;SOR=0.941	GT:AD:DP:GQ:PL	0/1:6,7:13:99:177,0,148
chr1	44805040	.	G	GA	17.85	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.57;ReadPosRankSum=1.04;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:29:46,0,29
chr1	45169711	.	TA	T	187.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.05;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=6.254;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.3;QD=2.11;ReadPosRankSum=-1.013;SOR=0.267	GT:AD:DP:GQ:PL	0/1:67,22:109:99:216,0,1510
chr1	45219630	.	C	CTTTTTTTT	87.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=-0.674;QD=14.63;ReadPosRankSum=-1.036;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:99:116,0,167
chr1	45223901	.	TATTAGCTG	T	472.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.212;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.227;SOR=0.765	GT:AD:DP:GQ:PL	0/1:28,14:42:99:501,0,2599
chr1	45266875	.	CT	C	180.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0.044;QD=10.63;ReadPosRankSum=-0.649;SOR=1.473	GT:AD:DP:GQ:PL	0/1:6,11:30:99:163,0,138
chr1	45278458	.	CGTGTGTGTGTGTGTGTGTGT	C	262.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-0.157;QD=32.85;ReadPosRankSum=-0.489;SOR=2.833	GT:AD:DP:GQ:PL	0/1:1,7:8:99:291,0,181
chr1	45295911	.	G	GTA	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	45472798	.	TTGTGTGTG	T,TTGTG	2415.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.67;QD=27.35;SOR=0.811	GT:AD:DP:GQ:PL	1/2:0,29,30:70:99:2444,1233,1188,1209,0,1120
chr1	45502026	.	CTT	C,CT	616.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.719;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.97;MQRankSum=0.09;QD=19.27;ReadPosRankSum=-0.916;SOR=1.556	GT:AD:DP:GQ:PL	1/2:2,14,16:34:99:645,255,304,262,0,211
chr1	45504483	.	GT	G	149.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.61;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.72;ReadPosRankSum=-0.854;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:97:178,0,97
chr1	45879276	.	TTC	T	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.68;ReadPosRankSum=0.366;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,2:7:54:54,0,166
chr1	45961327	.	CTTTTTTTTTTTTT	C	433.77	PASS	AC=1;AF=0.5;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.41;QD=27.37;SOR=6.273	GT:AD:DP:GQ:PL	0/1:0,8:22:99:425,0,224
chr1	45973435	.	A	AT	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.68;ReadPosRankSum=-1.465;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,2:7:54:54,0,166
chr1	45975088	.	G	GTTTTTT	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=0.674;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:82:120,0,82
chr1	45981270	.	CAAA	C	248.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.26;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.21;MQRankSum=-0.781;QD=22.62;ReadPosRankSum=0.511;SOR=1.387	GT:AD:DP:GQ:PL	0/1:5,6:19:99:277,0,164
chr1	46050004	.	TTCGG	T	286.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	46054629	.	GTGTT	G	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	46079580	.	AT	A	115.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr1	46080220	.	GT	G	384.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.05;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:48:413,48,0
chr1	46095130	.	C	CG	254.85	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.172;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=-0.674;QD=21.24;ReadPosRankSum=0.703;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,9:12:17:1|0:46095126_T_TCCCCCC:283,0,17
chr1	46096442	.	CA	C	353.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,12:12:36:382,36,0
chr1	46182893	.	GAAAAA	G	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:48:123,0,48
chr1	46347878	.	AT	A	454.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-0.535;QD=18.19;ReadPosRankSum=-2.09;SOR=1.287	GT:AD:DP:GQ:PL	0/1:7,18:25:99:483,0,101
chr1	46509752	.	CT	C	17.63	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=8.82;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:44,6,0
chr1	46521724	.	CT	C	237.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.64;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.49;QD=9.91;ReadPosRankSum=-0.627;SOR=2.613	GT:AD:DP:GQ:PL	0/1:9,15:24:99:266,0,144
chr1	46532925	.	C	CATATAT	125.1	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:11:153,11,0
chr1	46726876	.	G	GT	1011.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=1.993;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.965;QD=8.95;ReadPosRankSum=-0.414;SOR=0.496	GT:AD:DP:GQ:PL	0/1:66,47:139:99:1040,0,1026
chr1	47014821	.	A	AAAAAG	2920.77	PASS	AC=2;AF=1;AN=2;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.56;QD=32.26;SOR=3.15	GT:AD:DP:GQ:PL	1/1:0,45:61:99:2929,230,0
chr1	47046465	.	AC	A	161.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.22;ReadPosRankSum=0.921;SOR=0.269	GT:AD:DP:GQ:PL	0/1:2,6:8:47:190,0,47
chr1	47110766	.	G	GC	1487.77	PASS	AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.14;SOR=4.514	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1516,123,0
chr1	47124204	.	C	CA	386.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.359;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.29;QD=8.41;ReadPosRankSum=-1.802;SOR=0.357	GT:AD:DP:GQ:PL	0/1:28,18:46:99:415,0,735
chr1	47129299	.	GT	G	77.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.75;MQRankSum=0.431;QD=12.86;ReadPosRankSum=-0.674;SOR=0.941	GT:AD:DP:GQ:PL	0/1:1,5:6:10:105,0,10
chr1	47181920	.	CAAA	C	92.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.55;ReadPosRankSum=-1.383;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,3:9:75:90,0,75
chr1	47280085	.	C	CCT	962.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.091;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.92;ReadPosRankSum=0.013;SOR=1.151	GT:AD:DP:GQ:PL	0/1:17,25:42:99:991,0,582
chr1	47280497	.	G	GAACT	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=-0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:56:81,0,56
chr1	47402487	.	TTGTG	T,TTG	3102.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DP=154;ExcessHet=3.0103;FS=3.724;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.14;MQRankSum=0.254;QD=25.43;ReadPosRankSum=-0.357;SOR=2.4	GT:AD:DP:GQ:PL	1/2:2,51,34:100:99:3131,937,867,1713,0,1547
chr1	47515563	.	G	GA	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.122;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.34;ReadPosRankSum=1.62;SOR=0.368	GT:AD:DP:GQ:PL	0/1:12,8:20:99:175,0,269
chr1	47571590	.	CGG	C	88.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=0.598;SOR=2.093	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,3:6:99:0|1:47571590_CGG_C:117,0,214
chr1	47571943	.	CTTT	C,CTTTT	1334.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.267;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=1.857;MLEAC=1,1;MLEAF=0.5,0.5;MQ=53.84;MQRankSum=-2.064;QD=24.72;ReadPosRankSum=-0.464;SOR=1.371	GT:AD:DP:GQ:PL	1/2:8,26,20:71:99:1363,236,877,1056,0,1239
chr1	47582242	.	ATTTCGT	A	831.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.59;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=7.194;MLEAC=1;MLEAF=0.5;MQ=57.95;MQRankSum=-2.901;QD=17.33;ReadPosRankSum=0.11;SOR=2.468	GT:AD:DP:GQ:PL	0/1:25,23:48:99:860,0,944
chr1	47583321	.	G	GA	75.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.42;ReadPosRankSum=0.7;SOR=0.892	GT:AD:DP:GQ:PL	0/1:4,5:9:71:104,0,71
chr1	47603033	.	GT	G	392.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.273;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.54;MQRankSum=1.29;QD=17.85;ReadPosRankSum=-1.703;SOR=1.085	GT:AD:DP:GQ:PL	0/1:9,13:22:99:421,0,267
chr1	47652870	.	CCTTG	C	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.195;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=-0.366;SOR=0.593	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,3:9:99:0|1:47652870_CCTTG_C:108,0,821
chr1	47652875	.	AGC	A	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0;SOR=0.593	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,3:9:99:0|1:47652870_CCTTG_C:108,0,821
chr1	47691568	.	GCAGA	G	270.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.832;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=1.46;QD=10.41;ReadPosRankSum=-0.397;SOR=0.963	GT:AD:DP:GQ:PL	0/1:17,9:26:99:299,0,850
chr1	47738120	.	ATTT	A	62.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.94;ReadPosRankSum=-1.282;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,2:5:54:71,0,54
chr1	47838485	.	CT	C	111.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=0.157;SOR=1.402	GT:AD:DP:GQ:PL	0/1:1,7:8:3:138,0,3
chr1	47841038	.	G	GA	178.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=6.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.168;SOR=0.061	GT:AD:DP:GQ:PL	0/1:6,9:15:99:207,0,108
chr1	47841169	.	T	TA	12.99	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.25;ReadPosRankSum=0.431;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:34:41,0,34
chr1	47904668	.	T	TCCGCAC	837.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=31.32;SOR=1.739	GT:AD:DP:GQ:PL	1/1:0,17:17:60:866,60,0
chr1	48260462	.	G	GT	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=7.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.92;ReadPosRankSum=-0.076;SOR=3.056	GT:AD:DP:GQ:PL	0/1:9,6:20:72:72,0,159
chr1	48707374	.	TTC	T,TTCTC	122.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=8.451;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=17.54;ReadPosRankSum=-0.792;SOR=3.897	GT:AD:DP:GQ:PL	1/2:1,3,3:7:69:151,69,147,70,0,114
chr1	48821318	.	C	CA	246.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.49;ReadPosRankSum=-1.775;SOR=0.96	GT:AD:DP:GQ:PL	0/1:24,14:41:99:275,0,458
chr1	49056762	.	A	AC	19.87	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.62;ReadPosRankSum=-0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:20:48,0,20
chr1	49208095	.	A	AG	303.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.56;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=0.849;QD=20.25;ReadPosRankSum=0.648;SOR=0.892	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,10:15:99:1|0:49208092_GA_G:332,0,123
chr1	49333138	.	CA	C	54.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	50956212	.	C	CAAATACAGTGG	9187.77	PASS	AC=2;AF=1;AN=2;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=29.3;SOR=3.449	GT:AD:DP:GQ:PL	1/1:0,174:174:99:9216,636,0
chr1	51871371	.	C	CA	23.91	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.98;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,3:4:1:49,1,0
chr1	51905949	.	C	CTG	451.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.538;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=8.71;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=8.86;ReadPosRankSum=0.222;SOR=2.02	GT:AD:DP:GQ:PL	0/1:27,24:66:99:480,0,762
chr1	52272722	.	TTAG	T	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	52289220	.	TGTATTAAGGTCAA	T	996.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=32.01;SOR=4.892	GT:AD:DP:GQ:PL	1/1:0,23:23:70:1025,70,0
chr1	52306063	.	ATCT	A	16329.8	PASS	AC=2;AF=1;AN=2;DP=454;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.55;QD=31.2;SOR=1.053	GT:AD:DP:GQ:PL	1/1:0,386:386:99:16358,1165,0
chr1	52520879	.	A	ATTT	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=0;SOR=0.061	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,78
chr1	52759048	.	C	CA	169.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=0;QD=9.99;ReadPosRankSum=0;SOR=1.347	GT:AD:DP:GQ:PL	0/1:7,10:34:99:164,0,146
chr1	52912122	.	T	TA	623.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.64;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.504;QD=17.82;ReadPosRankSum=-0.461;SOR=0.387	GT:AD:DP:GQ:PL	0/1:7,28:43:59:652,0,59
chr1	52947350	.	T	TA	85.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.26;ReadPosRankSum=0.942;SOR=1.095	GT:AD:DP:GQ:PL	0/1:29,9:52:99:114,0,608
chr1	53153916	.	A	AT	111.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.88;ReadPosRankSum=0.945;SOR=1.781	GT:AD:DP:GQ:PL	0/1:9,10:29:99:137,0,203
chr1	53267474	.	G	GT	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.892;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.26;ReadPosRankSum=-1.522;SOR=0.993	GT:AD:DP:GQ:PL	0/1:39,11:59:99:141,0,722
chr1	53351349	.	ATT	A	76.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.168;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.68;ReadPosRankSum=0.536;SOR=0.223	GT:AD:DP:GQ:PL	0/1:7,3:10:99:105,0,322
chr1	53407406	.	C	CA	111.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=0;QD=2.43;ReadPosRankSum=-0.595;SOR=0.284	GT:AD:DP:GQ:PL	0/1:35,11:63:99:140,0,666
chr1	53553638	.	CCCTGCCCCTGGAGGCCTCG	C	614.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.32;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.06;QD=18.08;ReadPosRankSum=-1.055;SOR=0.443	GT:AD:DP:GQ:PL	0/1:17,17:34:99:643,0,662
chr1	53554533	.	A	AT	1364.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.42;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=4.411;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.954;QD=16.64;ReadPosRankSum=-0.647;SOR=0.331	GT:AD:DP:GQ:PL	0/1:38,44:82:99:1393,0,1174
chr1	53558583	.	C	CTG	240.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.22;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:269,18,0
chr1	54370235	.	A	AG	581.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.179;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.08;QD=11.64;ReadPosRankSum=-2.439;SOR=0.18	GT:AD:DP:GQ:PL	0/1:26,24:50:99:610,0,676
chr1	54389517	.	G	GT	1442.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.538;SOR=0.282	GT:AD:DP:GQ:PL	0/1:59,52:111:99:1471,0,1753
chr1	54395673	.	CA	C	85.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=6.673;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.02;QD=2.77;ReadPosRankSum=0.182;SOR=1.784	GT:AD:DP:GQ:PL	0/1:21,10:43:99:114,0,479
chr1	54605318	.	T	TG	319.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.75;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60.7;MQRankSum=-1.466;QD=7.8;ReadPosRankSum=0.583;SOR=0.394	GT:AD:DP:GQ:PGT:PID:PL	0/1:24,17:41:99:0|1:54605318_T_TG:348,0,498
chr1	54605319	.	G	GC	459.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.619;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=4.24;MLEAC=1;MLEAF=0.5;MQ=60.7;MQRankSum=1.69;QD=10.22;ReadPosRankSum=0.421;SOR=1.224	GT:AD:DP:GQ:PGT:PID:PL	0/1:21,24:45:99:1|0:54605318_T_TG:488,0,527
chr1	54670658	.	CCTT	C	4032.77	PASS	AC=2;AF=1;AN=2;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.46;QD=32.28;SOR=2.154	GT:AD:DP:GQ:PL	1/1:0,92:92:99:4061,277,0
chr1	54870481	.	TG	T	248.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.418;SOR=0.997	GT:AD:DP:GQ:PL	0/1:12,13:28:99:277,0,271
chr1	55064854	.	AATATATATATAT	A	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.66;MQRankSum=-0.674;QD=12.44;ReadPosRankSum=1.38;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,2:4:72:0|1:55064854_AATATATATATAT_A:78,0,72
chr1	55080612	.	G	GGTGTGT	800.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.38;MQRankSum=2.74;QD=26.69;ReadPosRankSum=-1.599;SOR=1.445	GT:AD:DP:GQ:PL	0/1:4,26:32:63:829,0,63
chr1	55138563	.	A	AT	207.8	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:236,21,0
chr1	55167545	.	G	GT	14.2	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.73;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:13:42,0,13
chr1	55199105	.	A	AT	179.88	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.7;ReadPosRankSum=-0.792;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	1/1:1,6:7:16:1|1:55199104_T_A:208,16,0
chr1	55199420	.	ATTTTTTTTT	A,AT	905.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.63;QD=37.82;SOR=3.352	GT:AD:DP:GQ:PL	1/2:0,11,12:23:99:934,268,215,208,0,138
chr1	55279345	.	CCCGGCCT	C	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	55518190	.	AC	A	278.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=-1.314;SOR=0.693	GT:AD:DP:GQ:PL	0/1:8,12:20:99:307,0,183
chr1	55521899	.	GGGGCGGA	G	545.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.45;SOR=2.985	GT:AD:DP:GQ:PL	1/1:0,14:14:41:574,41,0
chr1	55541338	.	AC	A	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:55541338_AC_A:135,9,0
chr1	55541340	.	ACCACCACC	A	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:55541338_AC_A:135,9,0
chr1	55557859	.	A	ATT	1636.77	PASS	AC=2;AF=1;AN=2;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.6;SOR=4.351	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,37:37:99:1|1:55557859_A_ATT:1665,111,0
chr1	55566411	.	TTAGTC	T	736.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=5.784	GT:AD:DP:GQ:PL	1/1:0,17:17:51:765,51,0
chr1	55571592	.	C	CT	121.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr1	55590787	.	CTT	C	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	55614036	.	CAT	C	488.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.64;QD=36.03;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,12:12:36:517,36,0
chr1	55643837	.	TA	T	2297.77	PASS	AC=2;AF=1;AN=2;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.5;QD=30.64;SOR=3.412	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2326,226,0
chr1	55691599	.	TAA	T	31.56	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
chr1	57219631	.	G	GA	1071.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=26.79;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1100,119,0
chr1	57417633	.	G	GGGATGTGTCCAAGGTCACACA	2389.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.65;QD=32.22;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,32:32:99:2418,162,0
chr1	59134607	.	C	CAG	7448.77	PASS	AC=2;AF=1;AN=2;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=28.81;SOR=1.485	GT:AD:DP:GQ:PL	1/1:0,166:166:99:7477,511,0
chr1	59160982	.	ATACT	A	715.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.13;QD=29.25;SOR=4.294	GT:AD:DP:GQ:PL	1/1:0,17:17:51:744,51,0
chr1	60228310	.	T	TTC	5195.77	PASS	AC=2;AF=1;AN=2;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=28.08;SOR=2.814	GT:AD:DP:GQ:PL	1/1:0,117:117:99:5224,352,0
chr1	60280749	.	GT	G	578.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=1.473	GT:AD:DP:GQ:PL	1/1:0,15:15:45:607,45,0
chr1	60466911	.	ACAG	A	1288.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.62;QD=24.69;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1317,90,0
chr1	60503883	.	TA	T	126.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.14;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:155,18,0
chr1	61331160	.	C	CT,CTTT	1583.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.96;MQRankSum=0;QD=32.32;ReadPosRankSum=1.18;SOR=0.859	GT:AD:DP:GQ:PL	1/2:6,17,26:85:99:1612,978,926,212,0,423
chr1	61548344	.	TTC	T	214.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.68;QD=5.37;ReadPosRankSum=0.864;SOR=0.509	GT:AD:DP:GQ:PL	0/1:29,11:40:99:243,0,819
chr1	61818428	.	T	TACAC	125.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.253;QD=25.15;ReadPosRankSum=-0.524;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,4:5:99:0|1:61818422_A_G:154,0,103
chr1	61892301	.	T	TG	4262.77	PASS	AC=2;AF=1;AN=2;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=32.31;SOR=3.729	GT:AD:DP:GQ:PL	1/1:0,116:116:99:4291,349,0
chr1	61921185	.	A	AT	85.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.773;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.9;ReadPosRankSum=0.131;SOR=1.609	GT:AD:DP:GQ:PL	0/1:15,7:29:99:114,0,288
chr1	62160525	.	T	TTA	95.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.319;QD=23.95;ReadPosRankSum=1.15;SOR=0.446	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,3:4:20:0|1:62160525_T_TTA:124,0,20
chr1	62253768	.	G	GA	289.56	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.3;ReadPosRankSum=-0.598;SOR=3.383	GT:AD:DP:GQ:PL	1/1:2,13:17:3:313,3,0
chr1	62329885	.	AT	A	2386.77	PASS	AC=2;AF=1;AN=2;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=26.23;SOR=2.226	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2415,273,0
chr1	62350123	.	GTTTTT	G	978.77	PASS	AC=1;AF=0.5;AN=2;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=36.02;SOR=4.68	GT:AD:DP:GQ:PL	0/1:0,13:32:4:750,0,4
chr1	62365428	.	G	GA	945.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.78;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,28:28:87:974,87,0
chr1	62417951	.	A	AG	628.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.3;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.49;ReadPosRankSum=-1.136;SOR=1.085	GT:AD:DP:GQ:PL	0/1:10,24:34:99:657,0,219
chr1	62417952	.	A	AG,AGAG	657.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.08;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=25.3;ReadPosRankSum=0.257;SOR=0.976	GT:AD:DP:GQ:PL	1/2:2,13,11:34:99:686,205,292,324,0,410
chr1	62483401	.	C	CAA	61.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.82;ReadPosRankSum=-2.189;SOR=2.494	GT:AD:DP:GQ:PL	0/1:3,4:7:59:90,0,59
chr1	62587014	.	T	TA	758.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=2.234;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=0.789;QD=11.16;ReadPosRankSum=-0.928;SOR=0.416	GT:AD:DP:GQ:PL	0/1:31,37:84:99:787,0,538
chr1	62673388	.	AT	A	114.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.862;SOR=0.859	GT:AD:DP:GQ:PL	0/1:2,7:9:24:143,0,24
chr1	62675426	.	C	CT	259.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1;QD=10.82;ReadPosRankSum=0.261;SOR=0.914	GT:AD:DP:GQ:PL	0/1:11,13:24:99:288,0,211
chr1	62675644	.	ACCTCAGGGCTGGAGGAGGAGGAGGAAGAGC	A	463.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.797;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.92;MQRankSum=1.98;QD=16.56;ReadPosRankSum=1.1;SOR=0.784	GT:AD:DP:GQ:PL	0/1:15,13:28:99:492,0,543
chr1	62712999	.	TG	T	298.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,10:10:30:327,30,0
chr1	62911305	.	G	GTA	101.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=66.83;QD=33.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr1	62954372	.	G	GA	2728.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.454;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=7.504;MLEAC=2;MLEAF=1;MQ=60.15;MQRankSum=0.359;QD=21.32;ReadPosRankSum=0.368;SOR=2.256	GT:AD:DP:GQ:PL	1/1:14,114:139:86:2757,86,0
chr1	62978924	.	CG	C	108.77	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=28.22;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,3:5:14:99,14,0
chr1	63009463	.	AGTGGATGACTTT	A	1341.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.73;QD=14.74;ReadPosRankSum=-1.091;SOR=0.955	GT:AD:DP:GQ:PL	0/1:54,37:91:99:1370,0,7141
chr1	63027411	.	AG	A	780.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,20:20:60:809,60,0
chr1	63044388	.	C	CA	196.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.921;SOR=4.294	GT:AD:DP:GQ:PL	0/1:1,13:17:10:162,0,10
chr1	63070537	.	AGTTAATGTG	A	1974.77	PASS	AC=2;AF=1;AN=2;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=27.17;SOR=2.059	GT:AD:DP:GQ:PL	1/1:0,45:45:99:2003,136,0
chr1	63085483	.	T	TA	489.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=27.21;SOR=6.273	GT:AD:DP:GQ:PL	1/1:0,18:22:64:498,64,0
chr1	63128836	.	G	GA	75.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.83;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=2.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.23;ReadPosRankSum=-0.852;SOR=1.981	GT:AD:DP:GQ:PL	0/1:26,8:40:99:104,0,497
chr1	63270823	.	C	CT	227.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.25;ClippingRankSum=0;DP=101;ExcessHet=3.0103;FS=4.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.73;ReadPosRankSum=-1.572;SOR=0.345	GT:AD:DP:GQ:PL	0/1:43,18:87:99:256,0,912
chr1	63300855	.	T	TA	159.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=7.533;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=0.617;QD=11.37;ReadPosRankSum=-0.694;SOR=4.615	GT:AD:DP:GQ:PL	0/1:3,11:17:45:182,0,45
chr1	63339735	.	CGG	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.99;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	63975859	.	C	CA	26.57	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr1	64022708	.	C	CA	63.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.641;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.59;MQRankSum=-0.349;QD=7.1;ReadPosRankSum=0.992;SOR=1.802	GT:AD:DP:GQ:PL	0/1:3,6:11:51:92,0,51
chr1	64034373	.	AT	A	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.11;ReadPosRankSum=-0.652;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,3:7:64:64,0,98
chr1	64104166	.	GAATCCACATATAAT	G	115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.542;SOR=0.269	GT:AD:DP:GQ:PL	0/1:8,4:12:99:144,0,412
chr1	65045602	.	TA	T	537.9	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=17.35;ReadPosRankSum=0.067;SOR=0.458	GT:AD:DP:GQ:PL	1/1:3,28:31:15:566,15,0
chr1	65068780	.	ATCTTT	A	205.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=0.319;QD=25.72;ReadPosRankSum=0.619;SOR=1.863	GT:AD:DP:GQ:PL	0/1:2,6:8:55:234,0,55
chr1	65141676	.	TTAATAATAA	T,TTAA	407.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.86;QD=29.79;SOR=2.494	GT:AD:DP:GQ:PL	1/2:0,3,8:11:96:436,313,306,118,0,96
chr1	65305102	.	TCA	T	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	65310268	.	GAAGGCAGGAGATC	G	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=0.566;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,592
chr1	65312100	.	TG	T	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=-2.189;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,4:7:91:129,0,91
chr1	65775330	.	AT	A	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.56;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.87;ReadPosRankSum=1.77;SOR=2.215	GT:AD:DP:GQ:PL	0/1:14,11:33:99:175,0,299
chr1	65872021	.	CTT	C	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=-0.319;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,3:4:67:0|1:65872019_A_G:123,0,67
chr1	65874626	.	A	AT	51.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.06;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
chr1	66031526	.	T	TCACA	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=0;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,78
chr1	66037973	.	GTT	G	59.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.11;QD=4.6;ReadPosRankSum=0.847;SOR=0.551	GT:AD:DP:GQ:PL	0/1:8,5:15:88:88,0,193
chr1	66058204	.	GT	G,GTT	174.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=17.48;SOR=3.258	GT:AD:DP:GQ:PL	1/2:0,6,4:10:86:203,86,99,142,0,173
chr1	66084015	.	T	TC	63.56	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=66.18;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:66084015_T_TC:90,6,0
chr1	66084016	.	T	TCTTC	63.56	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=66.18;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:66084015_T_TC:90,6,0
chr1	66091656	.	ACACT	A	328.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.44;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=3.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.55;ReadPosRankSum=3.16;SOR=2.215	GT:AD:DP:GQ:PL	0/1:7,9:16:99:357,0,393
chr1	66102755	.	A	ATTACT	523.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.14;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=-0.439;SOR=0.725	GT:AD:DP:GQ:PL	0/1:24,14:38:99:552,0,1672
chr1	66618316	.	TACAC	T	153.03	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:181,12,0
chr1	67091820	.	CTTTTTTTT	C	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.83;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.29;ReadPosRankSum=1.83;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,4:6:72:162,0,72
chr1	67108780	.	A	ACAACTGTGGAAATGGTGGGTACTGAGCTGTC	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	67109410	.	T	TTGTG	2223.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.32;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.37;QD=20.03;ReadPosRankSum=-0.67;SOR=0.478	GT:AD:DP:GQ:PL	0/1:53,58:111:99:2252,0,2180
chr1	67138877	.	AG	A	959.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.78;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=2.38;QD=12.8;ReadPosRankSum=1.34;SOR=0.701	GT:AD:DP:GQ:PL	0/1:43,32:75:99:988,0,1457
chr1	67154730	.	CAA	C,CA	1190.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.14;MQRankSum=0.297;QD=23.82;ReadPosRankSum=0.201;SOR=5.339	GT:AD:DP:GQ:PL	1/2:4,24,22:75:99:1219,291,398,546,0,490
chr1	67155862	.	TCTC	T	6686.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0;DP=353;ExcessHet=3.0103;FS=5.044;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=3.48;QD=19.21;ReadPosRankSum=0.248;SOR=0.955	GT:AD:DP:GQ:PL	0/1:172,176:348:99:6715,0,8159
chr1	67159899	.	CT	C	128.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.4;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:157,21,0
chr1	67160938	.	T	TAAA,TAAAAAAAAAAA	1926.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=29.63;ReadPosRankSum=-0.689;SOR=2.366	GT:AD:DP:GQ:PL	1/2:6,33,13:95:99:1955,721,829,974,0,1391
chr1	67194911	.	TTC	T	2905.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.094;ClippingRankSum=0;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=2.9;QD=15.54;ReadPosRankSum=0.223;SOR=0.732	GT:AD:DP:GQ:PL	0/1:94,93:187:99:2934,0,3163
chr1	67242225	.	CAT	C	109.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.17;MQRankSum=2.13;QD=10.98;ReadPosRankSum=-0.411;SOR=1.329	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,4:10:99:0|1:67242225_CAT_C:138,0,741
chr1	67242241	.	TGG	T	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.36;MQRankSum=1.73;QD=8.86;ReadPosRankSum=0;SOR=1.022	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,3:9:99:0|1:67242225_CAT_C:108,0,745
chr1	67287866	.	GA	G	52.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.01;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:80,12,0
chr1	67292473	.	A	AT	3672.77	PASS	AC=2;AF=1;AN=2;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=3.471	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,77:77:99:1|1:67292473_A_AT:3701,253,0
chr1	67390122	.	CG	C	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=-0.345;SOR=0.368	GT:AD:DP:GQ:PL	0/1:4,5:9:99:151,0,114
chr1	67423997	.	T	TTTCTC	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	67424157	.	TA	T	56.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:83,9,0
chr1	67425494	.	A	AT	140.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.98;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.61;ReadPosRankSum=0.447;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,7:11:14:164,0,14
chr1	67487401	.	GACACAGAC	G	162.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.15;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=12.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=3.31;SOR=4.362	GT:AD:DP:GQ:PL	0/1:7,6:17:99:191,0,244
chr1	67508080	.	CCACT	C	1851.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.16;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.91;ReadPosRankSum=0.616;SOR=0.77	GT:AD:DP:GQ:PL	0/1:45,48:93:99:1880,0,2646
chr1	67516191	.	GA	G	130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.199;SOR=1.23	GT:AD:DP:GQ:PL	0/1:3,8:11:49:159,0,49
chr1	67517486	.	CA	C	58.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr1	67591611	.	GAA	G,GA	684.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=2.399;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.92;MQRankSum=-0.331;QD=14.57;ReadPosRankSum=-1.521;SOR=0.344	GT:AD:DP:GQ:PL	1/2:7,12,28:54:99:713,350,571,128,0,141
chr1	67666812	.	G	GC	149.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:178,15,0
chr1	67672361	.	G	GT	29.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.96;ReadPosRankSum=-0.189;SOR=0.132	GT:AD:DP:GQ:PL	0/1:3,3:6:36:58,0,36
chr1	67672567	.	CT	C	61.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.69;ReadPosRankSum=-0.242;SOR=1.609	GT:AD:DP:GQ:PL	0/1:16,7:34:90:90,0,289
chr1	67796258	.	G	GT	537.8	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=19.92;ReadPosRankSum=-0.381;SOR=2.517	GT:AD:DP:GQ:PL	1/1:3,24:30:21:566,21,0
chr1	67852553	.	TTTTATATATATATATATATATATATATATATATA	T	212.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.27;QD=27.03;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:1|1:67852553_TTTTATATATATATATATATATATATATATATATA_T:241,18,0
chr1	67890361	.	GA	G	28.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.19;QD=14.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:55,6,0
chr1	68652184	.	T	TA	611.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.87;QD=8.27;ReadPosRankSum=-2.773;SOR=0.137	GT:AD:DP:GQ:PL	0/1:39,35:86:99:640,0,679
chr1	68652478	.	TATAAC	T	134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.589;QD=14.97;ReadPosRankSum=-0.241;SOR=0.892	GT:AD:DP:GQ:PL	0/1:4,5:9:99:163,0,260
chr1	68947318	.	C	CA	1925.77	PASS	AC=2;AF=1;AN=2;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.63;QD=29.18;SOR=1.376	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1954,198,0
chr1	68962541	.	C	CCGAGGTAAAACTGCGAACGGT	2060.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.271;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=3.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.7;ReadPosRankSum=-0.395;SOR=1.371	GT:AD:DP:GQ:PL	0/1:35,30:65:99:2089,0,4765
chr1	70034370	.	C	CCAGCCGCGTG	1422.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=28.42;SOR=3.126	GT:AD:DP:GQ:PL	1/1:0,32:32:99:1451,99,0
chr1	70502413	.	AT	A	584.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.39;ReadPosRankSum=0.233;SOR=0.638	GT:AD:DP:GQ:PL	0/1:8,17:25:99:613,0,247
chr1	70654981	.	GA	G	173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.35;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=10.573;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.982;QD=4.7;ReadPosRankSum=-0.094;SOR=2.857	GT:AD:DP:GQ:PL	0/1:24,13:51:99:202,0,398
chr1	70904523	.	T	TTGTGTG	1527.77	PASS	AC=2;AF=1;AN=2;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=30.62;SOR=3.086	GT:AD:DP:GQ:PL	1/1:0,32:37:99:1556,114,0
chr1	72241677	.	A	AAAAT	63.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.22;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	72401207	.	AGTGT	A	88.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=0.189;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,112
chr1	72748277	.	ATT	A	87.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.55;ReadPosRankSum=0;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,4:9:80:80,0,100
chr1	74666181	.	CTTTTTTTTTTTTTT	C	331.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	74666344	.	A	AC	54.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	74901739	.	CTT	C	875.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.724;QD=16.22;ReadPosRankSum=-0.259;SOR=0.536	GT:AD:DP:GQ:PL	0/1:25,29:125:99:881,0,778
chr1	75172756	.	TAA	T,TAAA	495.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.8;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=19.83;ReadPosRankSum=1.61;SOR=1.255	GT:AD:DP:GQ:PL	1/2:2,11,12:31:99:524,219,457,326,0,433
chr1	75614380	.	CT	C	266.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.85;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.76;ReadPosRankSum=0.472;SOR=0.462	GT:AD:DP:GQ:PL	0/1:34,22:61:99:295,0,704
chr1	75669619	.	T	TTTG	279.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=34.85;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:308,21,0
chr1	75677499	.	C	CTTTCT	63.56	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	75679569	.	C	CT	341.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-0.4;SOR=0.704	GT:AD:DP:GQ:PL	0/1:15,17:35:99:370,0,235
chr1	75704070	.	CATATATATATAT	C,CATATATATATATAT	862.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.86;QD=27.81;SOR=6.358	GT:AD:DP:GQ:PL	1/2:0,18,5:23:99:891,149,155,756,0,741
chr1	76194229	.	GT	G	2368.77	PASS	AC=2;AF=1;AN=2;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.5;QD=30.76;SOR=3.471	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2397,232,0
chr1	76253045	.	T	TA	382.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.8;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,11:11:33:411,33,0
chr1	76256040	.	TAA	T	173.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:202,18,0
chr1	76260866	.	CTTTT	C,CT	1618.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=32.06;SOR=1.609	GT:AD:DP:GQ:PL	1/2:0,20,20:55:99:1647,408,356,401,0,273
chr1	76287973	.	C	CA	97.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.099;SOR=2.833	GT:AD:DP:GQ:PL	0/1:2,7:13:43:86,0,43
chr1	76344513	.	G	GA	22.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.85;ReadPosRankSum=0.135;SOR=0.88	GT:AD:DP:GQ:PL	0/1:5,3:8:51:51,0,75
chr1	76346920	.	C	CAT	4780.77	PASS	AC=2;AF=1;AN=2;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;QD=30.86;SOR=2.325	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4809,328,0
chr1	76378357	.	ATAT	A	998.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.48;MQRankSum=0.63;QD=33.29;ReadPosRankSum=-0.579;SOR=2.517	GT:AD:DP:GQ:PL	1/1:1,29:30:74:1027,74,0
chr1	76388173	.	C	CT	28.75	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.11;ReadPosRankSum=0.792;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,5:8:15:56,0,15
chr1	77672215	.	A	AT	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.939;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.67;ReadPosRankSum=1.04;SOR=0.223	GT:AD:DP:GQ:PL	0/1:25,9:37:99:153,0,443
chr1	77806434	.	TA	T	104.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.98;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:133,15,0
chr1	77987867	.	ACT	A	37.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:28:66,0,28
chr1	78024162	.	T	TGG	92.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.43;ReadPosRankSum=2.25;SOR=0.33	GT:AD:DP:GQ:PL	0/1:7,4:11:99:121,0,237
chr1	78024345	.	C	CTAT	1556.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DP=101;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.19;QD=16.05;ReadPosRankSum=0.829;SOR=0.489	GT:AD:DP:GQ:PL	0/1:56,41:97:99:1585,0,2330
chr1	78033981	.	AAAATG	A	1222.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.74;MQRankSum=1.65;QD=23.51;ReadPosRankSum=-0.273;SOR=0.91	GT:AD:DP:GQ:PL	0/1:20,32:52:99:1251,0,1107
chr1	78034156	.	CAAA	C	329.31	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.776;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.56;QD=32.93;ReadPosRankSum=-0.106;SOR=1.501	GT:AD:DP:GQ:PL	0/1:3,7:20:99:355,0,137
chr1	78034326	.	CTT	C	33.56	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=16.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:60,6,0
chr1	78177213	.	TACAC	T	149.77	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=25.54;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,3:5:8:129,8,0
chr1	78188870	.	CA	C	241.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=1.99;SOR=0.223	GT:AD:DP:GQ:PL	0/1:8,9:17:99:270,0,221
chr1	78196274	.	AAAG	A	1863.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.99;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=11.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.94;ReadPosRankSum=1.18;SOR=2.09	GT:AD:DP:GQ:PL	0/1:41,48:89:99:1892,0,1779
chr1	78390046	.	C	CA	59.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=14.76;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:87,12,0
chr1	78414310	.	C	CA	464.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.792;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=6.471;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=0.792;QD=11.07;ReadPosRankSum=-1.288;SOR=3.912	GT:AD:DP:GQ:PL	0/1:16,26:71:99:493,0,261
chr1	78430689	.	A	AG	4636.77	PASS	AC=2;AF=1;AN=2;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.41;QD=32.24;SOR=0.791	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4665,379,0
chr1	78471060	.	T	TC	1784.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.85;ReadPosRankSum=-0.162;SOR=1.048	GT:AD:DP:GQ:PL	1/1:2,44:61:69:1798,69,0
chr1	78478500	.	CACAA	C	93.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=31.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	78601465	.	C	CT	900.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.04;QD=9.9;ReadPosRankSum=1.81;SOR=0.892	GT:AD:DP:GQ:PL	0/1:48,43:94:99:929,0,922
chr1	79128570	.	G	GT	6160.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DP=350;ExcessHet=3.0103;FS=4.293;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.34;QD=18.12;ReadPosRankSum=0.189;SOR=0.931	GT:AD:DP:GQ:PL	0/1:160,180:340:99:6189,0,5399
chr1	79358743	.	CA	C	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.521;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=1.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.77;ReadPosRankSum=1.18;SOR=0.368	GT:AD:DP:GQ:PL	0/1:7,7:19:95:95,0,165
chr1	79401808	.	CA	C	31.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.08;QD=10.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:58,9,0
chr1	82373114	.	C	CT	48.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	82437670	.	ATTTGT	A	3698.77	PASS	AC=2;AF=1;AN=2;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.61;QD=28.22;SOR=2.698	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,83:83:99:1|1:82437670_ATTTGT_A:3727,256,0
chr1	84355734	.	AAGAACTTCAAGGAT	A	857.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=26.97;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,20:20:61:886,61,0
chr1	84372991	.	T	TA	269.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.72;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:27:298,27,0
chr1	84670439	.	A	AC	173.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	84765340	.	G	GTA,GTATA	1315.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=62.29;MQRankSum=0.672;QD=29.01;ReadPosRankSum=1.47;SOR=2.252	GT:AD:DP:GQ:PL	1/2:1,8,24:40:99:1344,879,818,247,0,174
chr1	84876711	.	C	CA	1277.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=4.84;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=1.55;QD=19.07;ReadPosRankSum=-0.937;SOR=1.034	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1306,0,952
chr1	85113435	.	G	GA	472.77	PASS	AC=2;AF=1;AN=2;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=27.81;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,17:20:59:483,59,0
chr1	85116393	.	CT	C	27.99	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.1;MQRankSum=-0.319;QD=7;ReadPosRankSum=1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:14:56,0,14
chr1	85331808	.	G	GAGA	960.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.44;ReadPosRankSum=-1.536;SOR=0.368	GT:AD:DP:GQ:PL	0/1:22,25:47:99:989,0,1003
chr1	85538655	.	A	AG	470.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=29.99;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,9:12:51:481,51,0
chr1	85559118	.	CT	C	1341.77	PASS	AC=2;AF=1;AN=2;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.59;QD=25.8;SOR=3.83	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1370,156,0
chr1	85570521	.	GTTC	G	241.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	85573705	.	A	AC	1883.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.12;QD=26.67;SOR=5.376	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1912,153,0
chr1	85589939	.	GT	G	5692.77	PASS	AC=2;AF=1;AN=2;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=28.46;SOR=1.889	GT:AD:DP:GQ:PL	1/1:0,153:153:99:5721,461,0
chr1	85598527	.	TC	T	1766.77	PASS	AC=2;AF=1;AN=2;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=29.95;SOR=2.041	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1795,177,0
chr1	85725353	.	GCCGGAAA	G	802.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=1.8;QD=18.24;ReadPosRankSum=-2.652;SOR=0.927	GT:AD:DP:GQ:PL	0/1:22,22:44:99:831,0,821
chr1	85815855	.	CT	C	57.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:13:86,0,13
chr1	85930272	.	GAC	G	1255.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;QD=28.69;SOR=3.365	GT:AD:DP:GQ:PL	1/1:0,35:42:99:1239,115,0
chr1	86167624	.	GACAC	G	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.54;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	86210241	.	G	GT	698.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=29.12;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,24:24:72:727,72,0
chr1	86248972	.	AG	A	185.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
chr1	86362184	.	A	AT	337.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.969;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.26;QD=8.66;ReadPosRankSum=-0.463;SOR=0.33	GT:AD:DP:GQ:PL	0/1:20,19:47:99:366,0,362
chr1	86436196	.	CAT	C	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:38:81,0,38
chr1	86487992	.	A	AACAG	1864.77	PASS	AC=2;AF=1;AN=2;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.42;QD=32.98;SOR=3.109	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1893,129,0
chr1	86497417	.	TG	T	165.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=0.674;QD=13.81;ReadPosRankSum=1.6;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,6:12:99:194,0,200
chr1	86499342	.	TAA	T	209.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.353;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.98;ReadPosRankSum=0.366;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,6:10:99:238,0,156
chr1	86554813	.	G	GA	390.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.51;SOR=3.258	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,10:10:30:1|1:86554813_G_GA:419,30,0
chr1	86821194	.	A	ACT	1049.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=4.091	GT:AD:DP:GQ:PL	1/1:0,24:24:75:1078,75,0
chr1	86821910	.	CTAAAA	C	286.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=34.83;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	86958845	.	C	CT	35.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
chr1	86964131	.	CT	C	807.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=29.77;SOR=3.16	GT:AD:DP:GQ:PL	1/1:0,21:21:63:836,63,0
chr1	87045896	.	TCCTACA	T	4093.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.679;ClippingRankSum=0;DP=340;ExcessHet=3.0103;FS=2.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=0.296;SOR=0.558	GT:AD:DP:GQ:PL	0/1:176,125:303:99:4122,0,7286
chr1	87045902	.	A	ACCTACT	3894.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.593;ClippingRankSum=0;DP=336;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.21;ReadPosRankSum=1.26;SOR=0.66	GT:AD:DP:GQ:PL	0/1:127,129:256:99:3923,0,4334
chr1	87558066	.	CCACATA	C	331.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.93;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	89252013	.	A	AT	84.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.52;ReadPosRankSum=0.413;SOR=0.569	GT:AD:DP:GQ:PL	0/1:7,6:13:99:113,0,127
chr1	89273669	.	CA	C	12.99	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.25;ReadPosRankSum=-0.967;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:41:41,0,45
chr1	89323374	.	C	CTTTTTTTTTTTTT	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.67;QD=29.69;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	89435338	.	C	CT	26.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.83;ReadPosRankSum=-1.368;SOR=0.495	GT:AD:DP:GQ:PL	0/1:4,3:7:55:55,0,57
chr1	89476440	.	TCTCC	T	766.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.94;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.91;ReadPosRankSum=-1.247;SOR=1.022	GT:AD:DP:GQ:PL	0/1:15,20:35:99:795,0,767
chr1	89478686	.	TA	T	140.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.83;QD=28.18;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr1	89520329	.	GAAAAAC	G	4564.77	PASS	AC=2;AF=1;AN=2;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.43;QD=32.4;SOR=2.54	GT:AD:DP:GQ:PL	1/1:0,104:104:99:4593,314,0
chr1	89523417	.	A	ACTTGT	196.9	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.18;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:15:225,15,0
chr1	89525219	.	CT	C	273.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.325;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.81;ReadPosRankSum=0.307;SOR=2.833	GT:AD:DP:GQ:PL	1/1:1,11:17:27:257,27,0
chr1	89618472	.	GA	G	221.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=3.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.52;ReadPosRankSum=-0.65;SOR=1.402	GT:AD:DP:GQ:PL	0/1:19,15:50:99:250,0,406
chr1	89845926	.	GT	G	3194.83	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;MQRankSum=0.272;QD=24.39;SOR=1.124	GT:AD:DP:GQ:PL	1/1:1,130:131:99:3223,365,0
chr1	89851100	.	G	GT,GTT	735.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=22.99;ReadPosRankSum=0.623;SOR=4.921	GT:AD:DP:GQ:PL	1/2:2,21,9:36:99:764,222,159,366,0,359
chr1	90058242	.	G	GT	144.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=4.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.53;ReadPosRankSum=-1.016;SOR=0.061	GT:AD:DP:GQ:PL	0/1:29,12:44:99:173,0,538
chr1	90470357	.	C	CTT	23.58	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=11.79;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr1	91182860	.	T	TA	123.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.682;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.13;QD=3.87;ReadPosRankSum=-0.226;SOR=0.557	GT:AD:DP:GQ:PL	0/1:21,11:39:99:152,0,429
chr1	91740542	.	A	AT	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.98;MQRankSum=0.566;QD=5.97;ReadPosRankSum=0;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,4:7:33:70,0,33
chr1	91782117	.	TA	T	48.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.3;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.869;QD=3.75;ReadPosRankSum=0.496;SOR=1.179	GT:AD:DP:GQ:PL	0/1:8,5:13:77:77,0,170
chr1	91846595	.	T	TA	427.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.25;QD=32.91;SOR=2.147	GT:AD:DP:GQ:PL	1/1:0,13:13:39:456,39,0
chr1	91870289	.	ACTTCCCCGCGGGCGTCGGGCCCCCGTCCCCAC	A	1414.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.55;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.5;MQ=61.6;MQRankSum=3.7;QD=17.91;ReadPosRankSum=1.31;SOR=0.394	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1443,0,1417
chr1	91978963	.	T	TAA	164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-0.933;SOR=0.169	GT:AD:DP:GQ:PL	0/1:6,6:12:99:193,0,181
chr1	91978970	.	CTT	C	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.75;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.398;SOR=1.911	GT:AD:DP:GQ:PL	0/1:5,5:10:99:150,0,159
chr1	91989451	.	CTGTGTG	C	134.89	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.02;MQRankSum=0.431;QD=22.48;ReadPosRankSum=-1.383;SOR=0.941	GT:AD:DP:GQ:PL	0/1:1,5:6:2:161,0,2
chr1	92430435	.	CGTGT	C	20.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.16;ReadPosRankSum=-0.674;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:49:49,0,94
chr1	92446961	.	T	TTGTA	1488.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=4.698;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.38;QD=23.26;ReadPosRankSum=-1.624;SOR=0.233	GT:AD:DP:GQ:PL	0/1:24,40:64:99:1517,0,850
chr1	92457969	.	CA	C	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.07;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=0.965;QD=9.1;ReadPosRankSum=-0.061;SOR=3.417	GT:AD:DP:GQ:PL	0/1:7,11:25:99:192,0,112
chr1	92508281	.	C	CA	92.85	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.209;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=0.738;QD=7.14;ReadPosRankSum=-0.313;SOR=1.828	GT:AD:DP:GQ:PL	0/1:6,7:21:80:121,0,80
chr1	92605215	.	CTT	C	292.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.52;ReadPosRankSum=-0.281;SOR=0.368	GT:AD:DP:GQ:PL	0/1:5,8:13:99:321,0,213
chr1	92649312	.	G	GT	238.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.2;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=2.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.9;ReadPosRankSum=-0.437;SOR=0.257	GT:AD:DP:GQ:PL	0/1:5,7:20:89:267,0,89
chr1	92708000	.	A	AAC	459.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.33;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,11:11:33:488,33,0
chr1	92709689	.	T	TAC	871.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=5.892	GT:AD:DP:GQ:PL	1/1:0,18:18:60:900,60,0
chr1	92712598	.	GAA	G	1059.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=7.221;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=1.3;QD=19.63;ReadPosRankSum=-0.584;SOR=0.148	GT:AD:DP:GQ:PL	0/1:24,30:54:99:1088,0,836
chr1	92712861	.	CAG	C	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:35:123,0,35
chr1	92763091	.	CA	C	102.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.94;ReadPosRankSum=-0.273;SOR=0.412	GT:AD:DP:GQ:PL	0/1:25,10:44:99:131,0,570
chr1	92944314	.	C	CAGAGAGAGAG	629.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.79;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=-0.201;QD=24.34;ReadPosRankSum=-0.578;SOR=1.27	GT:AD:DP:GQ:PL	0/1:5,9:33:99:406,0,419
chr1	92979092	.	ATATATATATATATATATATATATATATATATG	A	175.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.99;ReadPosRankSum=1.64;SOR=0.412	GT:AD:DP:GQ:PL	0/1:13,9:22:99:204,0,399
chr1	92979094	.	ATATATATATATATATATATATATATATATG	A	231.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=2.57;SOR=0.54	GT:AD:DP:GQ:PL	0/1:12,10:22:99:260,0,298
chr1	92979681	.	TTA	T	140.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr1	93087689	.	T	TA	215.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.67;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.612;QD=15.43;ReadPosRankSum=0.915;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,12:14:5:243,0,5
chr1	93310849	.	GTTTTTTT	G	178.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr1	93312192	.	C	CT	164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.35;ReadPosRankSum=0.979;SOR=1.338	GT:AD:DP:GQ:PL	0/1:53,17:76:99:193,0,1042
chr1	93583818	.	CT	C	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.02;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.13;QD=2.32;ReadPosRankSum=0.87;SOR=1.514	GT:AD:DP:GQ:PL	0/1:17,10:32:91:91,0,309
chr1	93595115	.	AT	A	75.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0.579;QD=5.83;ReadPosRankSum=-0.206;SOR=0.941	GT:AD:DP:GQ:PL	0/1:7,6:16:77:104,0,77
chr1	93602675	.	T	TA	252.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=-1.627;SOR=0.818	GT:AD:DP:GQ:PL	0/1:15,14:32:99:281,0,219
chr1	93667241	.	G	GTTATA	20	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr1	93687528	.	C	CT	196.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=2.654;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.856;QD=5.62;ReadPosRankSum=-0.118;SOR=1.291	GT:AD:DP:GQ:PL	0/1:21,14:47:99:225,0,410
chr1	93692081	.	AAT	A	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.674;QD=9.13;ReadPosRankSum=-0.189;SOR=2.093	GT:AD:DP:GQ:PL	0/1:3,3:6:83:83,0,89
chr1	93704793	.	CT	C	130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=1.61;SOR=1.179	GT:AD:DP:GQ:PL	0/1:5,8:13:96:159,0,96
chr1	93998640	.	AT	A	759.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=4.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.53;ReadPosRankSum=0.557;SOR=0.161	GT:AD:DP:GQ:PL	0/1:13,24:37:99:788,0,375
chr1	94006401	.	CT	C	146.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.731;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.39;SOR=1.981	GT:AD:DP:GQ:PL	0/1:6,8:21:79:175,0,79
chr1	94041787	.	G	GAC	1886.77	PASS	AC=2;AF=1;AN=2;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=30.95;SOR=5.376	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1915,135,0
chr1	94312482	.	T	TC	1212.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.92;QD=31.48;SOR=0.811	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1241,102,0
chr1	94312528	.	G	GC	720.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.02;QD=25.9;SOR=1.863	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,18:18:54:1|1:94312528_G_GC:749,54,0
chr1	94312533	.	G	GC	646.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.43;QD=27.86;SOR=3.126	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,15:15:45:1|1:94312528_G_GC:675,45,0
chr1	94312542	.	G	GC	556.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.64;QD=29.17;SOR=3.767	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,13:13:39:1|1:94312528_G_GC:585,39,0
chr1	94312544	.	G	GC	556.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.64;QD=29.57;SOR=3.767	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,13:13:39:1|1:94312528_G_GC:585,39,0
chr1	94312554	.	A	AG	556.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=27.93;SOR=3.611	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:39:1|1:94312528_G_GC:585,39,0
chr1	94312559	.	CGGCTGGGTCGGGCG	C	556.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=27.23;SOR=3.611	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:39:1|1:94312528_G_GC:585,39,0
chr1	94312576	.	G	GC	556.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.64;QD=26.7;SOR=3.767	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,13:13:39:1|1:94312528_G_GC:585,39,0
chr1	94312579	.	G	GT	601.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=25.79;SOR=5.136	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:42:1|1:94312528_G_GC:630,42,0
chr1	94312584	.	G	GC	511.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.94;QD=27.85;SOR=4.977	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,11:11:36:1|1:94312528_G_GC:540,36,0
chr1	94335643	.	G	GA	258.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.88;SOR=1.085	GT:AD:DP:GQ:PL	1/1:0,10:10:30:287,30,0
chr1	94507069	.	TA	T	255.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.31;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,12:12:36:284,36,0
chr1	94574342	.	AT	A	106.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.243;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.09;QD=4.11;ReadPosRankSum=0.529;SOR=0.638	GT:AD:DP:GQ:PL	0/1:18,8:35:99:135,0,391
chr1	94667062	.	TTCTCTCTCTCTCTC	T	108.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.33;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	94667430	.	G	GA	2017.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.2;ReadPosRankSum=0.104;SOR=1.751	GT:AD:DP:GQ:PL	1/1:2,75:83:99:2046,200,0
chr1	94964139	.	AT	A	294.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.866;ClippingRankSum=0;DP=196;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.2;ReadPosRankSum=-1.644;SOR=0.883	GT:AD:DP:GQ:PL	0/1:99,35:175:99:323,0,2262
chr1	95286675	.	GTCCCAAATGTAAA	G	2172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.79;QD=18.41;ReadPosRankSum=0.5;SOR=0.65	GT:AD:DP:GQ:PL	0/1:60,58:118:99:2201,0,3787
chr1	95365257	.	AT	A	155.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.97;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:184,18,0
chr1	95367108	.	ACC	A	1616.77	PASS	AC=2;AF=1;AN=2;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.14;QD=25.57;SOR=6.138	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1645,129,0
chr1	95615748	.	C	CT	988.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.851;QD=10.63;ReadPosRankSum=-0.179;SOR=0.734	GT:AD:DP:GQ:PL	0/1:45,48:110:99:1017,0,765
chr1	97217214	.	GA	G	200.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.035;SOR=2.2	GT:AD:DP:GQ:PL	0/1:6,14:23:99:229,0,113
chr1	99157462	.	C	CATAT	20	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.16;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr1	99157493	.	A	ACACTCT	20	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.16;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr1	99167215	.	CA	C	91.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=15.31;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:120,18,0
chr1	99358430	.	G	GA	282.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-2.404;SOR=0.793	GT:AD:DP:GQ:PL	0/1:13,14:27:99:311,0,225
chr1	99387628	.	T	TA	1136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=6.306;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.913;QD=11.97;ReadPosRankSum=-1.413;SOR=1.675	GT:AD:DP:GQ:PL	0/1:43,52:97:99:1165,0,778
chr1	99418948	.	T	TGTGA	1359.77	PASS	AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.2;QD=31.45;SOR=4.047	GT:AD:DP:GQ:PL	1/1:0,14:32:99:1208,116,0
chr1	100133438	.	CTT	C	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.638;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.08;ReadPosRankSum=0.755;SOR=0.169	GT:AD:DP:GQ:PL	0/1:7,3:10:69:69,0,166
chr1	100181380	.	G	GA	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.85;ReadPosRankSum=1.1;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:62:75,0,62
chr1	100184963	.	C	CA	64.41	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.61;MQRankSum=-0.431;QD=10.73;ReadPosRankSum=1.38;SOR=0.368	GT:AD:DP:GQ:PL	1/1:1,5:6:8:92,8,0
chr1	100212662	.	AAC	A	51.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.26;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:35:80,0,35
chr1	100318092	.	A	AT	26.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.67;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.98;ReadPosRankSum=1.71;SOR=0.892	GT:AD:DP:GQ:PL	0/1:4,5:9:52:55,0,52
chr1	100358386	.	A	ATTCTT	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	100366446	.	GTT	G,GT	809.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.42;MQRankSum=0.429;QD=24.54;ReadPosRankSum=-0.437;SOR=2.726	GT:AD:DP:GQ:PL	1/2:2,23,8:37:99:838,117,107,498,0,445
chr1	100381109	.	A	AT	503.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=-0.332;SOR=2.165	GT:AD:DP:GQ:PL	0/1:9,25:34:83:532,0,83
chr1	100459463	.	C	CATTTT	286.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	100480713	.	C	CAAA	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.93;MQRankSum=0;QD=7.35;ReadPosRankSum=0.253;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:61:65,0,61
chr1	100481062	.	AG	A	809.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.11;QD=31.14;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,26:26:78:838,78,0
chr1	100588105	.	C	CTT	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=2.19;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:71:96,0,71
chr1	100661987	.	GAAA	G	465.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=33.27;ReadPosRankSum=-0.718;SOR=1.675	GT:AD:DP:GQ:PL	0/1:4,10:33:99:450,0,125
chr1	100662090	.	CTG	C	421.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.4;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr1	100671628	.	TAA	T	15.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.68;MQRankSum=0;QD=2.65;ReadPosRankSum=0.253;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,2:6:44:44,0,110
chr1	100696185	.	G	GA	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.12;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.24;ReadPosRankSum=0.283;SOR=0.784	GT:AD:DP:GQ:PL	0/1:11,5:16:96:96,0,184
chr1	100733207	.	G	GTT,GTTT	2244.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.27;MQRankSum=0.384;QD=31.18;ReadPosRankSum=1.63;SOR=3.889	GT:AD:DP:GQ:PL	1/2:5,48,19:88:99:2273,367,267,892,0,907
chr1	100817165	.	CCT	C	216.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=-0.907;SOR=1.609	GT:AD:DP:GQ:PL	0/1:8,7:15:99:245,0,280
chr1	100817448	.	ACCCC	A	567.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=1.99;QD=11.59;ReadPosRankSum=-0.95;SOR=0.236	GT:AD:DP:GQ:PL	0/1:32,17:49:99:596,0,1268
chr1	100817559	.	T	TGCGCGC	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.75;ReadPosRankSum=1.65;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:56:162,0,56
chr1	100950183	.	TA	T	51.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=0.524;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:11:79,0,11
chr1	100961779	.	ATT	A	268.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=26.26;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,7:10:28:272,28,0
chr1	100963479	.	CAG	C	286.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	101188976	.	T	TA	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.08;ReadPosRankSum=-1.378;SOR=0.43	GT:AD:DP:GQ:PL	0/1:15,6:26:72:72,0,300
chr1	101194965	.	G	GT	701.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-1.892;SOR=0.705	GT:AD:DP:GQ:PL	0/1:35,36:75:99:730,0,582
chr1	101487373	.	AACACAC	A	320.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=0.693;QD=26.73;ReadPosRankSum=0.569;SOR=0.99	GT:AD:DP:GQ:PL	0/1:4,8:17:99:317,0,298
chr1	103354939	.	C	CTGTGTGTGTG	1040.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.925;QD=14.87;ReadPosRankSum=-1.076;SOR=0.661	GT:AD:DP:GQ:PL	0/1:45,25:100:99:1069,0,3300
chr1	103380379	.	T	TA	182.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.9;ReadPosRankSum=-0.215;SOR=0.941	GT:AD:DP:GQ:PL	0/1:18,13:35:99:211,0,333
chr1	103381489	.	A	ATTTTCTCGTCCTGTTGAG	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.8;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.75;MQRankSum=-2.369;QD=21.6;ReadPosRankSum=-2.369;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,5:8:99:0|1:103381489_A_ATTTTCTCGTCCTGTTGAG:201,0,1168
chr1	103381493	.	A	AATACTTGCCGACACCATGTCGACAAGATTGGAATTATATTTTTATTGCAAGGGTTTAG	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.7;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.75;MQRankSum=-2.369;QD=21.6;ReadPosRankSum=-2.369;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,5:8:99:0|1:103381489_A_ATTTTCTCGTCCTGTTGAG:201,0,1168
chr1	103471456	.	CCAT	C	1894.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.21;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=3.062;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.32;QD=23.68;ReadPosRankSum=-0.678;SOR=0.384	GT:AD:DP:GQ:PL	0/1:30,50:84:99:1923,0,1064
chr1	103471734	.	A	AAAATAAATAAATAAAT	710.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-2.365;QD=14.81;ReadPosRankSum=-0.636;SOR=0.433	GT:AD:DP:GQ:PL	0/1:31,17:48:99:739,0,4218
chr1	103487394	.	CT	C	2372.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.229;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;MQRankSum=0.58;QD=19.14;ReadPosRankSum=0.685;SOR=1.022	GT:AD:DP:GQ:PL	1/1:12,112:127:91:2401,91,0
chr1	103496805	.	GA	G	586.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.755;QD=14.67;ReadPosRankSum=-0.71;SOR=1.148	GT:AD:DP:GQ:PL	0/1:9,31:45:97:615,0,97
chr1	104076272	.	CA	C	233.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.93;SOR=0.468	GT:AD:DP:GQ:PL	0/1:10,14:27:99:262,0,137
chr1	104117682	.	GTA	G	96.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.36;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:19:125,0,19
chr1	107950114	.	T	TTG	30.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.431;QD=10.26;ReadPosRankSum=-0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:27:59,0,27
chr1	107979566	.	AT	A	463.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=33.13;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,14:14:42:492,42,0
chr1	108160260	.	GA	G	944.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=4.451;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.801;QD=11.11;ReadPosRankSum=-0.386;SOR=0.323	GT:AD:DP:GQ:PL	0/1:32,53:85:99:973,0,555
chr1	108299775	.	ATG	A	177.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=6.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.152;SOR=0.049	GT:AD:DP:GQ:PL	0/1:9,8:20:99:206,0,331
chr1	108299807	.	G	GTA	98.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=8.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.7;ReadPosRankSum=2.48;SOR=3.056	GT:AD:DP:GQ:PL	0/1:16,5:24:99:127,0,679
chr1	108417352	.	T	TTTG	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	109167054	.	T	TAA	77.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.26;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:105,12,0
chr1	109200268	.	C	CA	60.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.1;ReadPosRankSum=-1.086;SOR=0.299	GT:AD:DP:GQ:PL	0/1:21,8:33:89:89,0,411
chr1	109202743	.	C	CAAA	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.75;ReadPosRankSum=0;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:43:67,0,43
chr1	109295950	.	TA	T	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=1.329	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:1|1:109295950_TA_T:270,18,0
chr1	109295955	.	TTA	T	281.8	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=1.329	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:21:1|1:109295950_TA_T:310,21,0
chr1	109339414	.	G	GT	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.383;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.1;ReadPosRankSum=0.615;SOR=0.237	GT:AD:DP:GQ:PL	0/1:28,10:42:99:108,0,546
chr1	109350198	.	G	GT	125.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.549;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=17.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.7;ReadPosRankSum=-0.351;SOR=4.226	GT:AD:DP:GQ:PL	0/1:23,11:48:99:154,0,430
chr1	109377157	.	TA	T,TAA	419.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.319;SOR=0.883	GT:AD:DP:GQ:PL	1/2:6,16,12:36:99:448,170,341,247,0,460
chr1	109465165	.	ACTT	A	2909.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DP=213;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=2.11;SOR=0.637	GT:AD:DP:GQ:PL	0/1:126,79:205:99:2938,0,6027
chr1	109466562	.	TTTTTTTG	T	712.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=20.157;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=0.596;SOR=3.664	GT:AD:DP:GQ:PL	0/1:46,37:83:99:741,0,3192
chr1	109474250	.	T	TAAA	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-1.645;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:56:81,0,56
chr1	109529322	.	T	TAA	2291.77	PASS	AC=2;AF=1;AN=2;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=26.54;SOR=5.67	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2320,156,0
chr1	109560372	.	AT	A	46.28	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=0.524;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:9:74,0,9
chr1	109608870	.	CACTT	C	1282.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.913;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=5.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.57;ReadPosRankSum=1.62;SOR=1.548	GT:AD:DP:GQ:PL	0/1:39,34:73:99:1311,0,2005
chr1	109656038	.	A	AAGAGAGAGAG	90.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.45;QD=28.47;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:9:117,9,0
chr1	109740310	.	AGT	A	381.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.966;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=9.014;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0.858;QD=7.64;ReadPosRankSum=-0.244;SOR=2.468	GT:AD:DP:GQ:PL	0/1:34,16:57:99:410,0,1015
chr1	109773690	.	AAT	A	115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=2.6;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=-0.635;QD=3.13;ReadPosRankSum=2.44;SOR=1.292	GT:AD:DP:GQ:PL	0/1:25,12:37:99:144,0,690
chr1	109773705	.	ATT	A	254.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.71;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=1.28;QD=7.08;ReadPosRankSum=2.5;SOR=1.101	GT:AD:DP:GQ:PL	0/1:24,12:40:99:283,0,757
chr1	109779621	.	T	TC	1387.77	PASS	AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=28.67;SOR=3.5	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1416,114,0
chr1	109792735	.	A	ACGC	325.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=5.519;MLEAC=1;MLEAF=0.5;MQ=61.16;MQRankSum=0.254;QD=14.16;ReadPosRankSum=-1.711;SOR=0.09	GT:AD:DP:GQ:PL	0/1:13,10:23:99:354,0,510
chr1	109856384	.	CAA	C	94.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	109856842	.	TG	T	620.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=5.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.52;ReadPosRankSum=-0.429;SOR=0.155	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,28:40:99:0|1:109856842_TG_T:649,0,217
chr1	109867853	.	CT	C	15.85	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=0.253;QD=3.17;ReadPosRankSum=0;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:6:43,0,6
chr1	109883576	.	C	CAT	731.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.92;SOR=4.294	GT:AD:DP:GQ:PL	1/1:0,17:17:51:760,51,0
chr1	109898263	.	A	ACC	210.84	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr1	109944420	.	TA	T	17.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.444;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=0.674;QD=2.23;ReadPosRankSum=-1.1;SOR=1.447	GT:AD:DP:GQ:PL	0/1:4,4:8:46:46,0,64
chr1	110009654	.	AC	A	1184.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=31.18;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1213,114,0
chr1	110145758	.	ACCTGGGGGGTCTTCTAACTACTGG	A	205.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.88;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.5;MQ=56.84;MQRankSum=-2.166;QD=17.15;ReadPosRankSum=0.618;SOR=1.445	GT:AD:DP:GQ:PL	0/1:6,6:12:99:234,0,1233
chr1	110172346	.	T	TG	296.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.513;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=1.23;SOR=1.493	GT:AD:DP:GQ:PL	0/1:16,13:29:99:325,0,414
chr1	110199172	.	CTG	C	212.77	PASS	AC=1;AF=0.5;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=27.8;SOR=4.977	GT:AD:DP:GQ:PL	0/1:0,4:11:29:110,0,29
chr1	110199225	.	TG	T	614.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.76;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=14.15;MLEAC=2;MLEAF=1;MQ=60.36;MQRankSum=0.4;QD=23.64;ReadPosRankSum=1.34;SOR=6.517	GT:AD:DP:GQ:PL	1/1:1,25:26:55:643,55,0
chr1	110280252	.	ATCC	A	7372.77	PASS	AC=2;AF=1;AN=2;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.67;QD=23.62;SOR=1	GT:AD:DP:GQ:PL	1/1:0,169:169:99:7401,509,0
chr1	110301766	.	AGTGTGTGT	A,AGT	964.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.33;QD=29.67;SOR=1.136	GT:AD:DP:GQ:PL	1/2:0,7,18:25:99:993,562,492,190,0,118
chr1	110527452	.	G	GC	54.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	110558276	.	A	AC	1861.77	PASS	AC=2;AF=1;AN=2;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=28.59;SOR=6.399	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1890,147,0
chr1	110592048	.	CTT	C	377.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0;DP=117;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.2;QD=6.09;ReadPosRankSum=-2.071;SOR=0.416	GT:AD:DP:GQ:PL	0/1:45,17:110:99:406,0,1416
chr1	110603286	.	A	AGGTGCTTCCTCCGTGGTGTCCAGGCAGG	1324.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=5.187;MLEAC=1;MLEAF=0.5;MQ=62.23;MQRankSum=6.06;QD=21.37;ReadPosRankSum=-2.36;SOR=1.981	GT:AD:DP:GQ:PL	0/1:43,19:62:99:1353,0,8350
chr1	110906247	.	C	CA	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.175;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.769;SOR=1.708	GT:AD:DP:GQ:PL	0/1:7,12:23:63:219,0,63
chr1	111059812	.	C	CGA	1522.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=4.204;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=3.5;QD=12.48;ReadPosRankSum=-0.84;SOR=0.265	GT:AD:DP:GQ:PL	0/1:67,55:126:99:1551,0,2102
chr1	111437176	.	G	GA	455.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,16:16:48:484,48,0
chr1	111663003	.	CAA	C	31.91	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:16:60,0,16
chr1	111833488	.	C	CCT	604.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.64;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=5.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.52;SOR=1.572	GT:AD:DP:GQ:PL	0/1:37,18:55:99:633,0,1448
chr1	111890240	.	C	CT	102.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.21;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=8.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.67;ReadPosRankSum=1.09;SOR=2.925	GT:AD:DP:GQ:PL	0/1:20,8:28:99:131,0,526
chr1	111893788	.	GT	G	207.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.989;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.662;QD=7.16;ReadPosRankSum=1.05;SOR=1.349	GT:AD:DP:GQ:PL	0/1:15,14:54:99:236,0,290
chr1	111957501	.	CTCACAGACTGATGACTCACAGGGG	C	1956.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.93;ClippingRankSum=0;DP=197;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.5;MQ=59.49;MQRankSum=-2.885;QD=12.15;ReadPosRankSum=-0.102;SOR=0.58	GT:AD:DP:GQ:PL	0/1:103,58:161:99:1985,0,3921
chr1	111957547	.	GGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA	G	1928.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.71;ClippingRankSum=0;DP=199;ExcessHet=3.0103;FS=3.825;MLEAC=1;MLEAF=0.5;MQ=59.5;MQRankSum=-3.019;QD=11.48;ReadPosRankSum=-2.643;SOR=1.023	GT:AD:DP:GQ:PL	0/1:111,57:168:99:1957,0,4297
chr1	111970431	.	TACACACACAC	T,TACACACACACACAC	660.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;QD=31.61;SOR=4.294	GT:AD:DP:GQ:PL	1/2:0,10,7:17:99:689,274,258,425,0,405
chr1	112020222	.	GC	G	628.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.65;ReadPosRankSum=1.23;SOR=0.705	GT:AD:DP:GQ:PGT:PID:PL	0/1:15,17:32:99:0|1:112020222_GC_G:657,0,541
chr1	112029024	.	AT	A	13.24	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.31;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:13:41,0,13
chr1	112033456	.	G	GA	1026.77	PASS	AC=2;AF=1;AN=2;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;QD=31.11;SOR=4.112	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1055,99,0
chr1	112237831	.	A	ATAATAT	441.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=30.35;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:33:470,33,0
chr1	112240038	.	CT	C	520.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DP=218;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.985;QD=3.92;ReadPosRankSum=0.404;SOR=0.929	GT:AD:DP:GQ:PL	0/1:94,39:193:99:549,0,2149
chr1	112246770	.	AT	A	91.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.31;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:120,18,0
chr1	112305406	.	TA	T	440.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.864;QD=6.39;ReadPosRankSum=-0.789;SOR=0.753	GT:AD:DP:GQ:PL	0/1:42,27:101:99:469,0,837
chr1	113113167	.	GTATATATATATATA	G	136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=-0.524;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:99:165,0,140
chr1	113255686	.	T	TTG	261.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.791;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0;SOR=0.509	GT:AD:DP:GQ:PL	0/1:11,14:35:99:290,0,369
chr1	113460676	.	CAATAAATA	C,CAATA	540.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.57;QD=33.8;SOR=2.049	GT:AD:DP:GQ:PL	1/2:0,4,12:16:99:569,419,422,156,0,308
chr1	113471629	.	CT	C	68.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.02;ReadPosRankSum=0.64;SOR=1.646	GT:AD:DP:GQ:PL	0/1:25,9:43:97:97,0,572
chr1	113616382	.	G	GA	117.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=1.29;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:83:146,0,83
chr1	113657018	.	A	AT	415.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8;ReadPosRankSum=0.472;SOR=1.051	GT:AD:DP:GQ:PL	0/1:29,23:66:99:444,0,518
chr1	113659065	.	ACT	A	5801.77	PASS	AC=2;AF=1;AN=2;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=26.31;SOR=1.437	GT:AD:DP:GQ:PL	1/1:0,132:132:99:5830,398,0
chr1	114122954	.	CTG	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	114133022	.	AT	A	318.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=24.52;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,13:13:39:347,39,0
chr1	114137013	.	C	CAT	646.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=4.047	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr1	114215083	.	CTCTGA	C	376.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr1	114224782	.	A	AT,ATT	3486.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.314;ClippingRankSum=0;DP=303;ExcessHet=3.0103;FS=2.384;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.16;MQRankSum=1.82;QD=15.5;ReadPosRankSum=0.197;SOR=0.493	GT:AD:DP:GQ:PL	1/2:43,104,78:263:99:3515,824,1174,920,0,1960
chr1	114240319	.	T	TA	4154.77	PASS	AC=2;AF=1;AN=2;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=29.83;SOR=0.862	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4183,340,0
chr1	114240774	.	AACACACAC	A,AAC	517.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=31.58;SOR=5.283	GT:AD:DP:GQ:PL	1/2:0,6,7:13:99:546,225,188,196,0,158
chr1	114249473	.	CTTT	C	197.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=25.86;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,3:6:18:193,18,0
chr1	114339956	.	C	CTAAA	5120.77	PASS	AC=2;AF=1;AN=2;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.15;SOR=3.176	GT:AD:DP:GQ:PL	1/1:0,108:108:99:5149,349,0
chr1	114372332	.	TA	T	933.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.477;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=9.887;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.2;QD=9.34;ReadPosRankSum=-0.152;SOR=1.567	GT:AD:DP:GQ:PL	0/1:48,52:117:99:962,0,958
chr1	114400195	.	G	GA	213.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.56;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.48;ReadPosRankSum=0.876;SOR=0.446	GT:AD:DP:GQ:PL	0/1:19,14:33:99:242,0,354
chr1	114407236	.	CA	C	26.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.431;QD=4.47;ReadPosRankSum=-1.834;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,4:6:24:55,0,24
chr1	114423544	.	AC	A	214.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.93;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=1.21;QD=10.74;ReadPosRankSum=-1.863;SOR=0.132	GT:AD:DP:GQ:PL	0/1:11,9:20:99:243,0,373
chr1	114442355	.	C	CA	536.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=-2.227;SOR=0.348	GT:AD:DP:GQ:PL	0/1:31,27:62:99:565,0,554
chr1	114449826	.	G	GTTTTTT	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.197;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=-0.958;QD=3.27;ReadPosRankSum=-0.527;SOR=1.079	GT:AD:DP:GQ:PL	0/1:24,5:48:99:123,0,1190
chr1	114940215	.	T	TG	325.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.167;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.52;QD=3.88;ReadPosRankSum=-1.442;SOR=0.624	GT:AD:DP:GQ:PL	0/1:58,26:84:99:354,0,1733
chr1	114940632	.	CA	C	432.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.789;QD=9.41;ReadPosRankSum=0.016;SOR=1.115	GT:AD:DP:GQ:PL	0/1:21,25:58:99:461,0,402
chr1	114949966	.	T	TCA	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=1.38;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,64
chr1	114963973	.	TA	T	111.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.22;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.29;ReadPosRankSum=1.51;SOR=0.737	GT:AD:DP:GQ:PL	0/1:23,11:34:99:140,0,446
chr1	114969925	.	GA	G	347.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.22;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=8.255;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.15;QD=8.28;ReadPosRankSum=0.872;SOR=2.194	GT:AD:DP:GQ:PL	0/1:23,19:42:99:376,0,523
chr1	115006230	.	TA	T	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.046;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-0.895;SOR=0.569	GT:AD:DP:GQ:PL	0/1:11,12:32:99:219,0,219
chr1	115110989	.	C	CT	182.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,10:10:29:211,29,0
chr1	115117984	.	AT	A	137.31	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.57;MQRankSum=-0.14;QD=15.26;ReadPosRankSum=1.59;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,8:9:1:163,1,0
chr1	115119535	.	GCA	G	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.75;ReadPosRankSum=-0.842;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,99
chr1	115165424	.	CA	C	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.6;ReadPosRankSum=0.141;SOR=0.582	GT:AD:DP:GQ:PL	0/1:8,5:13:75:75,0,156
chr1	115166350	.	ATTGT	A	193.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.605;QD=17.62;ReadPosRankSum=-1.072;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,6:11:99:222,0,269
chr1	115220420	.	CTCCTTCCT	C,CTCCTTCCTTCCTTCCTTCCT	915.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=58.49;QD=27.68;SOR=5.058	GT:AD:DP:GQ:PL	1/2:0,17,8:25:99:944,311,597,640,0,619
chr1	115238016	.	CA	C,CAA	454.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=8.726;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.22;MQRankSum=0.516;QD=11.66;ReadPosRankSum=0.232;SOR=3.365	GT:AD:DP:GQ:PL	1/2:8,14,17:46:99:483,256,512,187,0,417
chr1	115276153	.	GA	G	18.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.385;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.14;ReadPosRankSum=1.04;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:47:47,0,49
chr1	115398044	.	GC	G	1327.77	PASS	AC=2;AF=1;AN=2;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.47;QD=30.18;SOR=3.467	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1356,132,0
chr1	115399757	.	C	CA	206.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=0;QD=17.23;ReadPosRankSum=-1.99;SOR=1.27	GT:AD:DP:GQ:PL	0/1:4,8:20:21:193,0,21
chr1	116268178	.	GAA	G	1428.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.584;QD=28.02;ReadPosRankSum=0.981;SOR=1.11	GT:AD:DP:GQ:PL	0/1:9,42:96:48:1322,0,48
chr1	116311366	.	G	GCACACACA	170.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.18;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	116563176	.	C	CA	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.791;QD=2.27;ReadPosRankSum=-0.992;SOR=0.188	GT:AD:DP:GQ:PL	0/1:10,4:14:60:60,0,194
chr1	116609126	.	TC	T	2137.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=191;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=2.01;QD=11.49;ReadPosRankSum=-0.838;SOR=0.799	GT:AD:DP:GQ:PL	0/1:106,80:186:99:2166,0,2963
chr1	116916645	.	CT	C	247.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.15;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:276,21,0
chr1	116933703	.	AC	A	113.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.25;ReadPosRankSum=1.67;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:42:142,0,42
chr1	117122285	.	G	GTCC	891.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.109;ClippingRankSum=0;DP=230;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.5;MQ=61.81;MQRankSum=3.13;QD=5.75;ReadPosRankSum=4.48;SOR=0.897	GT:AD:DP:GQ:PL	0/1:110,45:156:99:920,0,5623
chr1	117527645	.	GTCT	G	1612.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=9.53;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.5;QD=17.92;ReadPosRankSum=0.63;SOR=1.873	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1641,0,2072
chr1	117639033	.	CTT	C	325.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.44;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=1.42;QD=11.63;ReadPosRankSum=-0.648;SOR=0.914	GT:AD:DP:GQ:PL	0/1:18,10:28:99:354,0,809
chr1	117639828	.	TA	T	321.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-0.557;SOR=1.179	GT:AD:DP:GQ:PL	0/1:13,19:32:99:350,0,220
chr1	117659022	.	A	AT	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.51;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.2;ReadPosRankSum=-0.992;SOR=0.283	GT:AD:DP:GQ:PL	0/1:6,3:9:48:48,0,94
chr1	117985030	.	AT	A	251.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1;QD=9.68;ReadPosRankSum=0.979;SOR=0.255	GT:AD:DP:GQ:PL	0/1:12,14:26:99:280,0,231
chr1	118429438	.	G	GACA	349.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1.05;QD=18.41;ReadPosRankSum=-1.308;SOR=0.804	GT:AD:DP:GQ:PL	0/1:9,10:19:99:378,0,411
chr1	118491215	.	G	GT	281.89	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=1.24;SOR=0.793	GT:AD:DP:GQ:PL	0/1:9,13:31:92:306,0,92
chr1	118579170	.	T	TTGTA	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:47:123,0,47
chr1	118623681	.	TACACAC	T,TACACACAC	1496.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.5;MQRankSum=0.309;QD=34.81;ReadPosRankSum=0.814;SOR=3.056	GT:AD:DP:GQ:PL	1/2:1,25,17:49:99:1525,569,973,981,0,948
chr1	120166988	.	TA	T	20	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,1:1:3:1|1:120166988_TA_T:45,3,0
chr1	120166992	.	T	TA	20	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,1:1:3:1|1:120166988_TA_T:45,3,0
chr1	120277194	.	TTAA	T	3320.77	PASS	AC=2;AF=1;AN=2;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=29.86;SOR=3.855	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3349,229,0
chr1	120296033	.	AACAC	A	249.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.417;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=1.02;QD=22.71;ReadPosRankSum=0.297;SOR=0.25	GT:AD:DP:GQ:PL	0/1:4,7:13:99:278,0,117
chr1	120379730	.	C	CAA	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.81;MQRankSum=-1.29;QD=6.15;ReadPosRankSum=1.88;SOR=0.412	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,5:12:99:0|1:120379730_C_CAA:102,0,172
chr1	120381686	.	G	GT	1310.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.31;QD=28.06;SOR=6.439	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,24:24:90:1|1:120381686_G_GT:1339,90,0
chr1	120381687	.	G	GTGAGTCAC	1310.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.55;QD=26.71;SOR=6.518	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,25:25:90:1|1:120381686_G_GT:1339,90,0
chr1	120612037	.	TCCTCCGCCG	T	61.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.79;MQRankSum=-1.515;QD=2.06;ReadPosRankSum=1.19;SOR=0.693	GT:AD:DP:GQ:PL	0/1:26,4:30:90:90,0,1029
chr1	120612040	.	T	TCCTCCGCCG	130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=9.394;MLEAC=1;MLEAF=0.5;MQ=50.64;MQRankSum=-0.259;QD=5.94;ReadPosRankSum=0.727;SOR=3.258	GT:AD:DP:GQ:PL	0/1:18,4:22:99:159,0,801
chr1	143163582	.	AG	A	137.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.49;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.11;MQRankSum=1.67;QD=2.42;ReadPosRankSum=-0.653;SOR=0.415	GT:AD:DP:GQ:PL	0/1:47,10:57:99:166,0,1691
chr1	144615246	.	A	AAG	3325.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=4.52;ClippingRankSum=0;DP=495;ExcessHet=3.0103;FS=32.321;MLEAC=1;MLEAF=0.5;MQ=51.37;MQRankSum=-17.45;QD=7.54;ReadPosRankSum=2.38;SOR=2.25	GT:AD:DP:GQ:PL	0/1:340,101:441:99:3354,0,12534
chr1	144621555	.	AC	A	6915.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.74;ClippingRankSum=0;DP=1034;ExcessHet=3.0103;FS=26.998;MLEAC=1;MLEAF=0.5;MQ=39.93;MQRankSum=1.55;QD=7.46;ReadPosRankSum=0.99;SOR=1.22	GT:AD:DP:GQ:PL	0/1:620,307:989:99:6944,0,18683
chr1	144852508	.	AAACAT	A	867.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.89;MQRankSum=-3.734;QD=4.85;ReadPosRankSum=-1.057;SOR=0.716	GT:AD:DP:GQ:PGT:PID:PL	0/1:146,33:179:99:0|1:144852508_AAACAT_A:896,0,5921
chr1	144852532	.	G	GCCC	915.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.531;ClippingRankSum=0;DP=163;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.5;MQ=47.84;MQRankSum=-2.049;QD=5.69;ReadPosRankSum=-0.868;SOR=0.423	GT:AD:DP:GQ:PGT:PID:PL	0/1:130,31:161:99:0|1:144852532_G_GCCC:944,0,5485
chr1	144852632	.	TAA	T	299.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=58.25;MQRankSum=0;QD=6.25;ReadPosRankSum=1.26;SOR=0.215	GT:AD:DP:GQ:PGT:PID:PL	0/1:37,11:48:99:0|1:144852632_TAA_T:328,0,1474
chr1	144873962	.	CT	C	4535.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.396;ClippingRankSum=0;DP=382;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=1;QD=12.1;ReadPosRankSum=-0.915;SOR=0.759	GT:AD:DP:GQ:PL	0/1:231,144:375:99:4564,0,7909
chr1	144905992	.	TA	T	50.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.62;ReadPosRankSum=-0.522;SOR=0.527	GT:AD:DP:GQ:PL	0/1:6,5:11:79:79,0,109
chr1	144916370	.	GT	G	157.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.97;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=57.65;MQRankSum=-0.664;QD=12.14;ReadPosRankSum=0.344;SOR=2.584	GT:AD:DP:GQ:PL	0/1:7,6:13:99:186,0,222
chr1	144917827	.	CA	C	2286.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DP=154;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=41.82;MQRankSum=-4.46;QD=15.14;ReadPosRankSum=-0.233;SOR=0.829	GT:AD:DP:GQ:PL	0/1:77,74:151:99:2315,0,2421
chr1	144919008	.	AC	A	2186.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0;DP=172;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.5;MQ=58.52;MQRankSum=-3.934;QD=13.67;ReadPosRankSum=0.782;SOR=0.991	GT:AD:DP:GQ:PL	0/1:86,74:160:99:2215,0,2651
chr1	144923823	.	TAGGAAGAAACGGCA	T	8122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.078;ClippingRankSum=0;DP=389;ExcessHet=3.0103;FS=53.646;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.28;QD=26.03;ReadPosRankSum=-0.075;SOR=2.611	GT:AD:DP:GQ:PL	0/1:109,203:312:99:8151,0,3902
chr1	144930405	.	TTATC	T	166.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.56;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.68;ReadPosRankSum=1.98;SOR=0.693	GT:AD:DP:GQ:PL	0/1:5,5:10:99:195,0,195
chr1	144931737	.	CGAG	C	599.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.753;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=4;QD=5.13;ReadPosRankSum=0.873;SOR=1.333	GT:AD:DP:GQ:PGT:PID:PL	0/1:93,24:117:99:1|0:144931727_G_A:628,0,4043
chr1	145014535	.	CT	C	81.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.741;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.43;ReadPosRankSum=-0.369;SOR=0.446	GT:AD:DP:GQ:PL	0/1:5,6:11:99:110,0,99
chr1	145016032	.	C	CA	1303.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0;DP=265;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=2.67;QD=6.33;ReadPosRankSum=1.17;SOR=0.755	GT:AD:DP:GQ:PL	0/1:135,71:212:99:1332,0,3348
chr1	145017784	.	CT	C	42.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.42;ReadPosRankSum=-1.282;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:11:70,0,11
chr1	145017822	.	C	CTCCTTCCTTCCCTCCCCTCCCCTCCCTTCCTTCCT	1159.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.5;QD=30;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:80:1188,80,0
chr1	145018102	.	G	GAGAA	64.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.754;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=2.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.23;ReadPosRankSum=-0.158;SOR=1.981	GT:AD:DP:GQ:PL	0/1:25,4:29:93:93,0,972
chr1	145038686	.	AG	A	108.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=1.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.75;ReadPosRankSum=0.027;SOR=0.275	GT:AD:DP:GQ:PL	0/1:23,6:29:99:137,0,836
chr1	145104052	.	AGT	A	1822.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0;DP=580;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=2.41;QD=3.41;ReadPosRankSum=-0.02;SOR=0.74	GT:AD:DP:GQ:PL	0/1:455,79:534:99:1851,0,18342
chr1	145109283	.	CAAAAAAAAA	C	177.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.166;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-1.42;QD=10.46;ReadPosRankSum=0.128;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,5:17:99:0|1:145109283_CAAAAAAAAA_C:206,0,509
chr1	145109312	.	C	CA	176.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=-0.722;SOR=0.892	GT:AD:DP:GQ:PL	0/1:9,11:20:99:205,0,137
chr1	145112284	.	CCG	C	372.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.092;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=-0.981;QD=6.21;ReadPosRankSum=0.346;SOR=0.435	GT:AD:DP:GQ:PGT:PID:PL	0/1:47,13:60:99:0|1:145112284_CCG_C:401,0,3045
chr1	145112288	.	G	GCA	437.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.359;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.67;MQRankSum=-0.999;QD=7.18;SOR=0.42	GT:AD:DP:GQ:PGT:PID:PL	0/1:48,13:61:99:0|1:145112284_CCG_C:466,0,3039
chr1	145115658	.	TATTTTTAA	T	2621.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DP=344;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.78;QD=7.73;ReadPosRankSum=2.29;SOR=0.57	GT:AD:DP:GQ:PL	0/1:257,82:339:99:2650,0,10458
chr1	145579572	.	G	GT	70.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.489;QD=8.85;ReadPosRankSum=0.414;SOR=2.833	GT:AD:DP:GQ:PL	0/1:3,5:8:44:99,0,44
chr1	145581644	.	C	CT	383.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.8;QD=9.36;ReadPosRankSum=0.53;SOR=1.514	GT:AD:DP:GQ:PL	0/1:21,20:57:99:412,0,353
chr1	145586671	.	CTTTTA	C	3008.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DP=205;ExcessHet=3.0103;FS=7.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=-0.612;SOR=0.372	GT:AD:DP:GQ:PGT:PID:PL	0/1:115,82:197:99:0|1:145586671_CTTTTA_C:3037,0,4660
chr1	145586678	.	AC	A	3029.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.39;ClippingRankSum=0;DP=196;ExcessHet=3.0103;FS=5.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.78;SOR=0.467	GT:AD:DP:GQ:PGT:PID:PL	0/1:111,81:192:99:0|1:145586671_CTTTTA_C:3058,0,4386
chr1	146232864	.	GAC	G	23.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.14;MQRankSum=0.674;QD=5.95;ReadPosRankSum=-0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:51:52,0,51
chr1	146252612	.	AAC	A	770.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.39;MQRankSum=2.96;QD=13.76;ReadPosRankSum=-2.603;SOR=0.359	GT:AD:DP:GQ:PL	0/1:34,22:56:99:799,0,1338
chr1	146253131	.	TTCAGA	T	722.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=219;ExcessHet=3.0103;FS=79.58;MLEAC=1;MLEAF=0.5;MQ=31.07;MQRankSum=-4.171;QD=3.46;ReadPosRankSum=1.45;SOR=0.87	GT:AD:DP:GQ:PL	0/1:178,31:209:99:751,0,7292
chr1	146395573	.	T	TGAGACACTAAATGCTCTCTCC	312.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0;DP=263;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.53;MQRankSum=-4.967;QD=2.16;ReadPosRankSum=-5.64;SOR=0.086	GT:AD:DP:GQ:PL	0/1:127,18:145:99:341,0,5268
chr1	146397618	.	GATA	G	349.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=39.16;MQRankSum=0.477;QD=14.57;ReadPosRankSum=0.206;SOR=0.105	GT:AD:DP:GQ:PL	0/1:14,10:24:99:378,0,557
chr1	146399527	.	TATCTG	T	3794.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.844;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=19.579;MLEAC=1;MLEAF=0.5;MQ=28.34;MQRankSum=4.9;QD=30.36;ReadPosRankSum=1.32;SOR=2.891	GT:AD:DP:GQ:PL	0/1:31,94:125:99:3823,0,999
chr1	146728013	.	CTT	C	202.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.6;ReadPosRankSum=-1.116;SOR=0.569	GT:AD:DP:GQ:PL	0/1:7,6:13:99:231,0,292
chr1	146728162	.	T	TA	8271.77	PASS	AC=2;AF=1;AN=2;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=29.74;SOR=1.907	GT:AD:DP:GQ:PL	1/1:0,222:222:99:8300,671,0
chr1	146748008	.	CAGCCA	C	598.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.32;ReadPosRankSum=-1.089;SOR=0.76	GT:AD:DP:GQ:PL	0/1:15,16:31:99:627,0,582
chr1	146756222	.	AAAAC	A	637.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.079;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.23;QD=14.83;ReadPosRankSum=0;SOR=1.287	GT:AD:DP:GQ:PL	0/1:25,18:43:99:666,0,1281
chr1	146766069	.	C	CAT	8321.77	PASS	AC=2;AF=1;AN=2;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=29.68;SOR=2.226	GT:AD:DP:GQ:PL	1/1:0,184:184:99:8350,571,0
chr1	147093079	.	T	TAAAAG	241.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	147381397	.	G	GA	536.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.77;ReadPosRankSum=-0.563;SOR=1.218	GT:AD:DP:GQ:PL	0/1:7,25:37:33:565,0,33
chr1	148009715	.	G	GGA	28.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=52.96;MQRankSum=-0.084;QD=4.8;ReadPosRankSum=0.842;SOR=2.303	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,109
chr1	148252243	.	T	TA	291.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.49;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.5;MQ=51.17;MQRankSum=-4.688;QD=6.34;ReadPosRankSum=-1.05;SOR=0.144	GT:AD:DP:GQ:PGT:PID:PL	0/1:33,13:46:99:0|1:148252243_T_TA:320,0,1126
chr1	149899305	.	CA	C	54.03	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=1.28;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,4:5:12:82,0,12
chr1	149900985	.	C	CA	177.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0;QD=4.8;ReadPosRankSum=-1.239;SOR=0.382	GT:AD:DP:GQ:PL	0/1:23,14:62:99:206,0,493
chr1	150048139	.	AAT	A	271.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;QD=33.67;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,7:9:26:257,26,0
chr1	150203082	.	C	CT	82.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1;QD=2.96;ReadPosRankSum=-0.434;SOR=1.85	GT:AD:DP:GQ:PL	0/1:19,9:40:99:111,0,395
chr1	150230422	.	GCT	G	304.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.79;QD=5;ReadPosRankSum=-0.704;SOR=0.133	GT:AD:DP:GQ:PL	0/1:46,15:61:99:333,0,1467
chr1	150236314	.	C	CT	441.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0;DP=311;ExcessHet=3.0103;FS=3.546;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.47;QD=3.18;ReadPosRankSum=-1.077;SOR=0.427	GT:AD:DP:GQ:PL	0/1:96,43:231:99:470,0,1919
chr1	150256413	.	T	TTTATTATTATTA	391.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=1.12;QD=17.03;ReadPosRankSum=-0.899;SOR=0.77	GT:AD:DP:GQ:PL	0/1:12,11:25:99:420,0,756
chr1	150297334	.	CT	C	68.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.959;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.91;ReadPosRankSum=0.628;SOR=0.045	GT:AD:DP:GQ:PL	0/1:6,8:14:91:97,0,91
chr1	150301006	.	ATT	A	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.272;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:63:120,0,63
chr1	150310549	.	CA	C,CAA	286.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-2.216;SOR=2.964	GT:AD:DP:GQ:PL	1/2:6,10,10:35:99:315,165,356,122,0,276
chr1	150310973	.	ATT	A	34.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.96;MQRankSum=-0.126;QD=6.96;ReadPosRankSum=-1.036;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:25:63,0,25
chr1	150315719	.	AAAAAAAT	A	331.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.76;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	150389964	.	GA	G	1457.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;MQRankSum=0.357;QD=21.44;ReadPosRankSum=0.389;SOR=4.205	GT:AD:DP:GQ:PL	1/1:3,65:68:99:1486,125,0
chr1	150390386	.	T	TTCTC	87.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.63;MQRankSum=-0.366;QD=17.59;ReadPosRankSum=0.792;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,3:7:74:115,0,74
chr1	150432870	.	GGTT	G,GGTTGTT	318.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=25.23;SOR=3.056	GT:AD:DP:GQ:PL	1/2:0,5,4:9:99:347,144,193,207,0,195
chr1	150459692	.	GA	G	122.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr1	150471848	.	A	AT	1155.74	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=2.465;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=19.26;ReadPosRankSum=-1.128;SOR=1.739	GT:AD:DP:GQ:PL	1/1:8,52:64:6:1183,6,0
chr1	150484395	.	ACC	A	3950.77	PASS	AC=2;AF=1;AN=2;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.46;SOR=4.826	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3979,287,0
chr1	150522471	.	C	CTG	136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:31:165,0,31
chr1	150528090	.	G	GACAC	354.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.89;ReadPosRankSum=-0.599;SOR=1.179	GT:AD:DP:GQ:PL	0/1:11,10:21:99:383,0,432
chr1	150528118	.	T	TACAC	109.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.816;SOR=0.078	GT:AD:DP:GQ:PL	0/1:6,4:10:99:138,0,240
chr1	150528175	.	GCA	G	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
chr1	150529322	.	T	TAA	4751.77	PASS	AC=2;AF=1;AN=2;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=31.9;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,103:103:99:4780,322,0
chr1	150550019	.	T	TA	825.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=30.07;SOR=6.358	GT:AD:DP:GQ:PL	1/1:0,23:23:69:854,69,0
chr1	150552263	.	GGCCGGGGCCGGGGCCTGA	G	368.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=29.94;SOR=2.093	GT:AD:DP:GQ:PL	1/1:0,9:9:28:397,28,0
chr1	150671243	.	AC	A	260.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.53;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=1.28;SOR=0.976	GT:AD:DP:GQ:PL	0/1:16,9:25:99:289,0,571
chr1	150686528	.	GA	G	491.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.722;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0.962;QD=10.25;ReadPosRankSum=-1.304;SOR=0.54	GT:AD:DP:GQ:PL	0/1:22,26:48:99:520,0,464
chr1	150730529	.	A	AT	308.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.172;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.39;SOR=0.655	GT:AD:DP:GQ:PL	0/1:12,16:37:99:337,0,178
chr1	150778114	.	CAAAAAA	C	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=53.04;MQRankSum=-0.431;QD=17.59;ReadPosRankSum=0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:60:81,0,60
chr1	150779556	.	TCA	T	70.28	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=-0.21;QD=11.71;ReadPosRankSum=0.21;SOR=2.303	GT:AD:DP:GQ:PL	0/1:1,5:6:9:98,0,9
chr1	150804401	.	GA	G	59.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.3;ReadPosRankSum=-0.473;SOR=0.582	GT:AD:DP:GQ:PL	0/1:17,9:32:88:88,0,380
chr1	150849071	.	ACC	A	244.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.48;ReadPosRankSum=-2.362;SOR=0.582	GT:AD:DP:GQ:PL	0/1:2,8:11:86:273,0,86
chr1	150914922	.	C	CAA	103.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.538;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=1.54;SOR=0.818	GT:AD:DP:GQ:PL	0/1:3,5:12:99:132,0,100
chr1	150922702	.	CT	C	122.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr1	150932953	.	GA	G	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=7.533;MLEAC=1;MLEAF=0.5;MQ=59.39;MQRankSum=0;QD=2.95;ReadPosRankSum=-0.717;SOR=3.056	GT:AD:DP:GQ:PL	0/1:15,8:35:96:96,0,320
chr1	150990466	.	C	CAT	1611.77	PASS	AC=2;AF=1;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=29.5;SOR=4.351	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1640,111,0
chr1	150996971	.	C	CA	98.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.12;ReadPosRankSum=-0.337;SOR=0.818	GT:AD:DP:GQ:PL	0/1:16,8:24:99:127,0,270
chr1	150998221	.	AT	A	259.53	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=-1.616;SOR=2.093	GT:AD:DP:GQ:PL	1/1:2,16:18:3:286,3,0
chr1	151015299	.	G	GA	137.89	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0;QD=15.32;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,7:11:13:162,0,13
chr1	151070252	.	CAA	C,CA	675.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.585;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.23;MQRankSum=0.43;QD=15.36;ReadPosRankSum=-0.777;SOR=3.816	GT:AD:DP:GQ:PL	1/2:5,10,29:44:79:704,472,658,86,0,79
chr1	151114882	.	C	CT	158.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr1	151139073	.	CT	C	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.59;QD=2.88;ReadPosRankSum=-1.823;SOR=0.512	GT:AD:DP:GQ:PL	0/1:35,16:64:99:175,0,801
chr1	151141266	.	CTTTT	C	85.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.08;ReadPosRankSum=0.18;SOR=0.18	GT:AD:DP:GQ:PL	0/1:2,3:7:99:105,0,144
chr1	151209297	.	C	CTT	173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.83;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=6.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.96;ReadPosRankSum=0.493;SOR=4.407	GT:AD:DP:GQ:PL	0/1:2,4:10:10:168,0,10
chr1	151212399	.	C	CCTT	5451.77	PASS	AC=2;AF=1;AN=2;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=28.88;SOR=2.613	GT:AD:DP:GQ:PL	1/1:0,121:121:99:5480,376,0
chr1	151237589	.	TC	T	2023.77	PASS	AC=2;AF=1;AN=2;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=28.91;SOR=2.439	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2052,210,0
chr1	151253892	.	G	GT	748.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=34.03;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,22:22:72:777,72,0
chr1	151318087	.	CA	C	65.31	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.19;MQRankSum=0.157;QD=8.16;ReadPosRankSum=-0.887;SOR=2.833	GT:AD:DP:GQ:PL	1/1:1,7:8:1:91,1,0
chr1	151341728	.	G	GC	214.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=2.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.93;ReadPosRankSum=-1.29;SOR=1.85	GT:AD:DP:GQ:PL	0/1:21,10:31:99:243,0,630
chr1	151380504	.	AAAAG	A	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0;QD=3.14;ReadPosRankSum=0;SOR=1.949	GT:AD:DP:GQ:PL	0/1:12,8:20:91:91,0,180
chr1	151381320	.	GA	G	2461.77	PASS	AC=2;AF=1;AN=2;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.57;QD=26.19;SOR=4.106	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2490,282,0
chr1	151403380	.	CTTTATTTTATTTTAT	C,CTTTATTTTAT	310.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=31.48;SOR=4.407	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:339,169,154,171,0,158
chr1	151505088	.	CT	C	46.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.68;ReadPosRankSum=-1.05;SOR=1.022	GT:AD:DP:GQ:PL	0/1:4,6:13:72:72,0,73
chr1	151509966	.	T	TA	82.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=0.674;SOR=2.303	GT:AD:DP:GQ:PL	0/1:1,5:6:5:110,0,5
chr1	151518479	.	CT	C	154.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.068;QD=8.15;ReadPosRankSum=-0.378;SOR=1.329	GT:AD:DP:GQ:PL	0/1:8,11:22:99:183,0,158
chr1	151535020	.	ATC	A	281.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.41;ReadPosRankSum=3.43;SOR=0.625	GT:AD:DP:GQ:PL	0/1:99,18:121:99:310,0,2963
chr1	151538784	.	T	TTC	594.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.037;QD=16.07;ReadPosRankSum=-0.958;SOR=0.146	GT:AD:DP:GQ:PL	0/1:16,21:39:99:623,0,470
chr1	151552301	.	TG	T	287.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.99;ReadPosRankSum=-1.256;SOR=0.941	GT:AD:DP:GQ:PL	0/1:7,9:16:99:316,0,226
chr1	151634512	.	A	AT	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.328;SOR=0.084	GT:AD:DP:GQ:PL	0/1:8,9:17:99:201,0,152
chr1	151664882	.	CT	C,CTT	210.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=2.496;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.24;MQRankSum=0.563;QD=7.81;ReadPosRankSum=0.818;SOR=0.238	GT:AD:DP:GQ:PL	1/2:8,10,9:40:75:239,75,251,134,0,344
chr1	151700189	.	C	CCTG	2716.77	PASS	AC=2;AF=1;AN=2;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=3.37	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2745,183,0
chr1	151742550	.	GGAGAGA	G	2593.77	PASS	AC=2;AF=1;AN=2;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.32;QD=26.41;SOR=3.037	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,58:58:99:1|1:151742550_GGAGAGA_G:2622,180,0
chr1	151742565	.	GGGAGACCATGGGGAGACGGAGAC	G	2909.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.86;QD=23.76;SOR=2.973	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,67:67:99:1|1:151742550_GGAGAGA_G:2938,203,0
chr1	151743870	.	TA	T	271.78	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.97;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:300,24,0
chr1	151752733	.	ATACTATCTATACAACCAGTCCTCAATTACTTTATATACAACCTCAGT	A	799.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=5.892	GT:AD:DP:GQ:PL	1/1:0,18:18:66:828,66,0
chr1	151753793	.	C	CAA	90.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=22.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:118,12,0
chr1	151789588	.	C	CTGTGTGTG,CTGTGTGTGTG	1156.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=58.91;QD=31.05;SOR=4.892	GT:AD:DP:GQ:PL	1/2:0,12,7:23:99:1185,277,187,440,0,362
chr1	151819752	.	AGGCAGG	A	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.61;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=1.79;QD=6.72;ReadPosRankSum=0.985;SOR=0.685	GT:AD:DP:GQ:PL	0/1:14,5:19:99:156,0,739
chr1	151955954	.	A	AT	26.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.36;ReadPosRankSum=0.524;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:28:55,0,28
chr1	152005327	.	TA	T	1155.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.63;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.58;QD=13.44;ReadPosRankSum=-1.506;SOR=0.895	GT:AD:DP:GQ:PL	0/1:47,39:86:99:1184,0,1631
chr1	152084175	.	T	TTGCTGCTCGCGCCTCTCC	4073.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-4.035;ClippingRankSum=0;DP=270;ExcessHet=3.0103;FS=5.52;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.75;QD=21.55;ReadPosRankSum=-2.449;SOR=1.132	GT:AD:DP:GQ:PL	0/1:110,79:189:99:4102,0,4247
chr1	152129065	.	GTGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	G	9117.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=8.13;ClippingRankSum=0;DP=895;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.5;MQ=59;MQRankSum=-10.81;QD=12.56;ReadPosRankSum=-0.063;SOR=0.85	GT:AD:DP:GQ:PL	0/1:463,263:726:99:9146,0,52320
chr1	152195728	.	AT	A	2029.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=1.734;MLEAC=2;MLEAF=1;MQ=60.25;MQRankSum=0.368;QD=21.14;ReadPosRankSum=-0.241;SOR=1.215	GT:AD:DP:GQ:PL	1/1:6,90:111:99:2058,140,0
chr1	152287341	.	CT	C	298.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.6;QD=19.92;SOR=1.911	GT:AD:DP:GQ:PL	1/1:0,15:15:44:327,44,0
chr1	152384498	.	G	GT	3797.77	PASS	AC=2;AF=1;AN=2;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=27.85;SOR=5.828	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3826,288,0
chr1	152681680	.	C	CAGCTCTGGGGGCTGCTGT	4159.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.22;MQRankSum=-3.193;QD=22.13;ReadPosRankSum=-6.361;SOR=0.685	GT:AD:DP:GQ:PL	0/1:88,100:188:99:4188,0,3813
chr1	153233991	.	A	ACTCTGGCGGCGG	286.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.5;MQ=61.46;MQRankSum=1.77;QD=19.12;ReadPosRankSum=-2.527;SOR=0.697	GT:AD:DP:GQ:PL	0/1:8,7:15:99:315,0,936
chr1	153279462	.	TAAG	T	2313.77	PASS	AC=2;AF=1;AN=2;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.61;QD=30.27;SOR=2.437	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2342,160,0
chr1	153315467	.	T	TAAG	1650.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=31.4;SOR=5.67	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1679,114,0
chr1	153390411	.	T	TA	161.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.11;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:190,21,0
chr1	153430249	.	TG	T	1324.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.78;QD=13.66;ReadPosRankSum=-0.231;SOR=0.818	GT:AD:DP:GQ:PL	0/1:49,48:97:99:1353,0,1346
chr1	153608885	.	C	CA	23.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.96;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.97;ReadPosRankSum=0.598;SOR=0.991	GT:AD:DP:GQ:PL	0/1:3,3:6:23:52,0,23
chr1	153636468	.	CTA	C	195.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.06;ReadPosRankSum=-0.203;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,7:13:99:0|1:153636468_CTA_C:224,0,213
chr1	153636471	.	CT	C	196.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.403;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.14;ReadPosRankSum=-0.272;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,7:13:99:0|1:153636468_CTA_C:225,0,213
chr1	153660514	.	AC	A	2286.77	PASS	AC=2;AF=1;AN=2;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=30.49;SOR=1.402	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2315,226,0
chr1	153661374	.	CG	C	940.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.42;QD=32.01;SOR=4.255	GT:AD:DP:GQ:PL	1/1:0,26:26:78:969,78,0
chr1	153665919	.	T	TC	4416.77	PASS	AC=2;AF=1;AN=2;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=33.21;SOR=1.893	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4445,403,0
chr1	153732708	.	CAAAAAAA	C	1112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.99;ReadPosRankSum=0.189;SOR=0.61	GT:AD:DP:GQ:PL	0/1:11,19:69:99:1141,0,916
chr1	153739932	.	CT	C	23.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.95;ReadPosRankSum=-0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:52:52,0,52
chr1	153742534	.	GGTGT	G	256.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.9;QD=38.16;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,6:8:18:254,18,0
chr1	153784666	.	CT	C	240.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=0.815;QD=10.47;ReadPosRankSum=-1.097;SOR=1.236	GT:AD:DP:GQ:PL	0/1:7,16:32:99:219,0,146
chr1	153788535	.	AACAC	A	72.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-1.068;SOR=1.981	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,5:7:68:0|1:153788535_AACAC_A:101,0,68
chr1	153790790	.	CTT	C	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-0.524;QD=7.55;ReadPosRankSum=1.65;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:49:66,0,49
chr1	153791120	.	TA	T	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.682;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=1.02;QD=2.37;ReadPosRankSum=-1.361;SOR=0.223	GT:AD:DP:GQ:PL	0/1:9,4:13:59:59,0,195
chr1	153800931	.	TACACACAC	T	467.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=1.45;SOR=0.61	GT:AD:DP:GQ:PL	0/1:3,12:15:99:496,0,172
chr1	153907278	.	CCTGCTGCTG	C	1350.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=4.926;MLEAC=1;MLEAF=0.5;MQ=62.04;MQRankSum=4.77;QD=13.64;ReadPosRankSum=-0.688;SOR=0.371	GT:AD:DP:GQ:PL	0/1:46,53:104:99:1379,0,3673
chr1	153921483	.	AC	A	752.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.06;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=8.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.145;SOR=0.158	GT:AD:DP:GQ:PL	0/1:33,28:61:99:781,0,921
chr1	153982848	.	A	AT	15.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.97;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:37:44,0,37
chr1	154110733	.	GA	G	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=1.25;SOR=0.446	GT:AD:DP:GQ:PL	0/1:8,8:18:99:153,0,157
chr1	154192463	.	G	GT	111.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=1.42;QD=5.08;ReadPosRankSum=-1.163;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,8:22:99:0|1:154192463_G_GT:140,0,267
chr1	154218550	.	CT	C	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.808;SOR=0.693	GT:AD:DP:GQ:PL	0/1:7,7:14:99:175,0,161
chr1	154218639	.	TTCAG	T	1871.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.1;ReadPosRankSum=-1.234;SOR=0.57	GT:AD:DP:GQ:PL	0/1:47,51:98:99:1900,0,1777
chr1	154227119	.	TTTG	T	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.563;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=0.403;SOR=0.804	GT:AD:DP:GQ:PL	0/1:9,4:13:99:141,0,371
chr1	154227292	.	G	GT	2123.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DP=288;ExcessHet=3.0103;FS=4.944;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.12;QD=10.46;ReadPosRankSum=-0.43;SOR=1.022	GT:AD:DP:GQ:PL	0/1:98,105:257:99:2152,0,1623
chr1	154243246	.	G	GT	223.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=1.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.66;ReadPosRankSum=-0.282;SOR=0.418	GT:AD:DP:GQ:PL	0/1:32,16:62:99:252,0,563
chr1	154306330	.	C	CA	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,2:3:59:0|1:154306330_C_CA:81,0,59
chr1	154309595	.	TA	T	150.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:179,15,0
chr1	154310223	.	G	GA	269.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=1.05;SOR=1.508	GT:AD:DP:GQ:PL	0/1:7,14:21:99:298,0,112
chr1	154319349	.	T	TTTTA	402.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.521;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.05;QD=19.18;ReadPosRankSum=0.565;SOR=0.784	GT:AD:DP:GQ:PL	0/1:10,11:21:99:431,0,402
chr1	154479657	.	C	CAT	9878.77	PASS	AC=2;AF=1;AN=2;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=26.92;SOR=2.459	GT:AD:DP:GQ:PL	1/1:0,220:220:99:9907,671,0
chr1	154519800	.	C	CA	5886.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.937;ClippingRankSum=0;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;MQRankSum=0.168;QD=35.69;ReadPosRankSum=-0.753;SOR=2.059	GT:AD:DP:GQ:PL	1/1:1,160:161:99:5915,450,0
chr1	154571174	.	T	TGGA	5096.77	PASS	AC=2;AF=1;AN=2;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=28.41;SOR=8.086	GT:AD:DP:GQ:PL	1/1:0,114:114:99:5125,345,0
chr1	154580348	.	G	GAC	206.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.98;MQRankSum=1.78;QD=10.88;ReadPosRankSum=-1.281;SOR=0.892	GT:AD:DP:GQ:PL	0/1:11,8:19:99:235,0,353
chr1	154841376	.	ATCTCTC	A	244.31	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.327;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.89;MQRankSum=0.349;QD=30.54;ReadPosRankSum=0;SOR=3.442	GT:AD:DP:GQ:PL	0/1:1,7:11:98:269,0,98
chr1	154841415	.	TCTCTCTCTCTCACA	T	493.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.45;MQRankSum=1.76;QD=22.44;ReadPosRankSum=0.988;SOR=0.352	GT:AD:DP:GQ:PL	0/1:9,13:22:99:522,0,352
chr1	154842199	.	G	GGCTGCTGCTGCT,GGCTGCTGCTGCTGCT	1383.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.11;QD=29.88;SOR=0.906	GT:AD:DP:GQ:PL	1/2:0,12,10:29:99:1412,394,296,494,0,424
chr1	154842330	.	TTGC	T	151.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.41;ReadPosRankSum=1.48;SOR=1.402	GT:AD:DP:GQ:PL	0/1:54,9:63:99:180,0,2155
chr1	155019076	.	C	CTTTTTTTTT	564.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.97;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.79;ReadPosRankSum=-0.348;SOR=2.584	GT:AD:DP:GQ:PL	0/1:1,8:15:1:472,0,1
chr1	155108663	.	A	AG	123.9	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=24.78;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:152,15,0
chr1	155228837	.	C	CT	13.95	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.33;ReadPosRankSum=-1.036;SOR=0.838	GT:AD:DP:GQ:PL	0/1:3,3:6:31:42,0,31
chr1	155235956	.	T	TA	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.93;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.414;SOR=1.329	GT:AD:DP:GQ:PL	0/1:3,5:8:45:102,0,45
chr1	155322438	.	T	TA	322.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=1.66;QD=6.33;ReadPosRankSum=0.719;SOR=0.462	GT:AD:DP:GQ:PL	0/1:30,21:53:99:351,0,552
chr1	155326869	.	T	TAC	55.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:82,9,0
chr1	155385917	.	AATTTT	A	152.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.99;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	155631307	.	AAC	A	53.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.56;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.81;MQRankSum=-2.208;QD=4.89;ReadPosRankSum=-0.82;SOR=0.33	GT:AD:DP:GQ:PL	0/1:7,4:11:82:82,0,158
chr1	155691191	.	GTA	G	68.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.75;ReadPosRankSum=0.797;SOR=0.124	GT:AD:DP:GQ:PL	0/1:21,4:28:97:97,0,671
chr1	155737425	.	AACACAC	A,AAC	404.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=47.41;QD=31.88;SOR=3.442	GT:AD:DP:GQ:PL	1/2:0,4,7:11:99:433,220,229,135,0,104
chr1	155746340	.	CT	C	642.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.91;ReadPosRankSum=-0.992;SOR=1.609	GT:AD:DP:GQ:PL	0/1:5,33:42:3:669,0,3
chr1	155785578	.	CAACT	C	12152.8	PASS	AC=2;AF=1;AN=2;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=31.75;SOR=1.166	GT:AD:DP:GQ:PL	1/1:0,274:274:99:12181,826,0
chr1	155880760	.	C	CA	14782.8	PASS	AC=2;AF=1;AN=2;DP=386;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=35.58;SOR=1.431	GT:AD:DP:GQ:PL	1/1:0,358:360:99:14811,1127,0
chr1	155891877	.	C	CAG	331.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	155891936	.	CTT	C	90.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.18;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:119,15,0
chr1	155928365	.	A	AT	95.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.69;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=0.008;SOR=3.611	GT:AD:DP:GQ:PL	0/1:3,8:11:18:124,0,18
chr1	155934683	.	CAA	C	59.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.64;ReadPosRankSum=-0.947;SOR=1.022	GT:AD:DP:GQ:PL	0/1:5,4:12:88:88,0,191
chr1	156131095	.	C	CGGGGCGG	286.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	156132909	.	GCA	G	1494.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.14;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=6.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.41;ReadPosRankSum=0.245;SOR=1.54	GT:AD:DP:GQ:PL	0/1:38,39:77:99:1523,0,1486
chr1	156280296	.	GATAA	G	1066.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=3.095;MLEAC=1;MLEAF=0.5;MQ=60.69;MQRankSum=2.63;QD=15.02;ReadPosRankSum=2.1;SOR=0.315	GT:AD:DP:GQ:PL	0/1:40,31:71:99:1095,0,1847
chr1	156288906	.	G	GT	89.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.57;MQRankSum=0.576;QD=7.48;ReadPosRankSum=-0.307;SOR=1.609	GT:AD:DP:GQ:PL	0/1:6,6:19:99:118,0,113
chr1	156294585	.	A	AT	176.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.68;ReadPosRankSum=0.37;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,8:10:25:205,0,25
chr1	156308031	.	GGA	G	752.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.42;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.8;QD=22.14;ReadPosRankSum=-0.379;SOR=0.527	GT:AD:DP:GQ:PL	0/1:12,22:34:99:781,0,379
chr1	156354347	.	TC	T	2608.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.28;ClippingRankSum=0;DP=291;ExcessHet=3.0103;FS=10.79;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=2.03;QD=9.7;ReadPosRankSum=-0.649;SOR=1.11	GT:AD:DP:GQ:PL	0/1:155,114:269:99:2637,0,3889
chr1	156499708	.	C	CA	40.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.19;ReadPosRankSum=1.28;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:5:68,0,5
chr1	156526723	.	C	CATGTAACACAGAGTGG	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:156526723_C_CATGTAACACAGAGTGG:90,6,0
chr1	156526725	.	T	TGTCATGG	63.56	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,1:1:6:1|1:156526723_C_CATGTAACACAGAGTGG:90,6,0
chr1	156539019	.	CA	C	170.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.793;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.08;ReadPosRankSum=0.099;SOR=1.473	GT:AD:DP:GQ:PL	0/1:2,8:13:12:177,0,12
chr1	156539320	.	C	CTT	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.127;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=0.744;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,6:20:99:129,0,191
chr1	156561557	.	G	GGGGCCGGGCC	196.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.49;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	156565049	.	A	AAC	35242.8	PASS	AC=2;AF=1;AN=2;DP=814;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.44;QD=33.23;SOR=0.956	GT:AD:DP:GQ:PL	1/1:0,793:793:99:35271,2418,0
chr1	156616442	.	ACCCTGGC	A	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=0.492;SOR=0.527	GT:AD:DP:GQ:PL	0/1:6,5:11:99:192,0,436
chr1	156752231	.	AT	A	672.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.239;SOR=0.317	GT:AD:DP:GQ:PL	0/1:28,24:52:99:701,0,786
chr1	156785762	.	AG	A	2855.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-5.12;ClippingRankSum=0;DP=165;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.52;QD=17.41;ReadPosRankSum=-0.613;SOR=0.404	GT:AD:DP:GQ:PGT:PID:PL	0/1:87,77:164:99:0|1:156785762_AG_A:2884,0,8030
chr1	156845492	.	A	AGT,AGTGT	1053.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.87;MQRankSum=0;QD=30.99;ReadPosRankSum=0.953;SOR=3.383	GT:AD:DP:GQ:PL	1/2:2,11,21:34:99:1082,504,463,206,0,234
chr1	156914240	.	CCATT	C	1737.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.529;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.931;QD=21.19;ReadPosRankSum=-1.576;SOR=0.507	GT:AD:DP:GQ:PL	0/1:37,45:82:99:1766,0,1768
chr1	156948956	.	CCCT	C	8318.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DP=484;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=3.38;QD=17.66;ReadPosRankSum=-0.557;SOR=0.729	GT:AD:DP:GQ:PL	0/1:249,222:471:99:8347,0,11648
chr1	156949153	.	CT	C	416.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DP=138;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=-0.097;QD=7.87;ReadPosRankSum=0.655;SOR=0.429	GT:AD:DP:GQ:PL	0/1:25,28:94:99:445,0,465
chr1	157519529	.	AATATACATAT	A	118.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.422;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.361;SOR=1.112	GT:AD:DP:GQ:PL	0/1:7,4:11:99:147,0,663
chr1	157652929	.	TA	T	313.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.48;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.25;QD=6.4;ReadPosRankSum=0.126;SOR=0.379	GT:AD:DP:GQ:PL	0/1:29,20:49:99:342,0,620
chr1	157718231	.	C	CAAAT	707.94	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.99;ReadPosRankSum=-0.763;SOR=2.712	GT:AD:DP:GQ:PL	1/1:1,15:16:14:736,14,0
chr1	157740186	.	GTC	G	6707.77	PASS	AC=2;AF=1;AN=2;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=24.61;SOR=0.761	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,151:151:99:1|1:157740186_GTC_G:6736,458,0
chr1	157774046	.	C	CA	195.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.64;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
chr1	157963362	.	GCGGGCTCC	G	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.1;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.72;ReadPosRankSum=-0.619;SOR=0.02	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,550
chr1	158056213	.	A	AACAC	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=0.842;SOR=2.245	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,120
chr1	158058266	.	CTT	C	452.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.16;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.91;MQRankSum=-0.717;QD=21.53;ReadPosRankSum=-2.947;SOR=1.893	GT:AD:DP:GQ:PL	0/1:7,14:45:99:470,0,266
chr1	158224575	.	CTGTGTGTG	C	204.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.941;ClippingRankSum=0;DP=95;ExcessHet=3.0103;FS=24.347;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.457;QD=8.9;ReadPosRankSum=2.3;SOR=4.332	GT:AD:DP:GQ:PL	0/1:14,9:41:99:233,0,535
chr1	158226465	.	CA	C	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.533;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.51;ReadPosRankSum=0.231;SOR=0.123	GT:AD:DP:GQ:PL	0/1:17,8:30:91:91,0,373
chr1	158436354	.	AT	A	400.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.323;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=3.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.86;ReadPosRankSum=0.777;SOR=1.473	GT:AD:DP:GQ:PL	0/1:28,23:51:99:429,0,620
chr1	158580921	.	GCA	G	297.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=28.78;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,7:10:30:261,30,0
chr1	158584103	.	G	GAA	746.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.74;ReadPosRankSum=-0.169;SOR=0.487	GT:AD:DP:GQ:PL	0/1:19,17:48:99:775,0,507
chr1	158637865	.	GA	G	646.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=8.916;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.17;QD=8.51;ReadPosRankSum=0.432;SOR=0.176	GT:AD:DP:GQ:PL	0/1:37,39:93:99:675,0,685
chr1	158656347	.	C	CAGAG	974.56	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.433;QD=30.61;ReadPosRankSum=-0.433;SOR=0.446	GT:AD:DP:GQ:PL	0/1:2,24:26:7:1002,0,7
chr1	158669342	.	T	TGTTTG	142.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=0.869;QD=10.98;ReadPosRankSum=-0.142;SOR=0.368	GT:AD:DP:GQ:PL	0/1:8,5:13:99:171,0,403
chr1	158943295	.	T	TCA	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=0.674;QD=6.2;ReadPosRankSum=-0.674;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:51:53,0,51
chr1	158946629	.	A	AATATATGTAT	373.78	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:25:402,25,0
chr1	159002577	.	TGGATTG	T	1939.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=31.99;SOR=5.33	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1968,133,0
chr1	159175004	.	CT	C	375.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.77;QD=28.91;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,13:13:39:404,39,0
chr1	159684047	.	CCACACACA	C	333.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.34;ReadPosRankSum=-0.126;SOR=0.892	GT:AD:DP:GQ:PL	0/1:2,9:11:40:362,0,40
chr1	159750731	.	G	GT	92.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.19;ReadPosRankSum=0.319;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,3:4:33:0|1:159750731_G_GT:121,0,33
chr1	159783820	.	CA	C	45.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.72;ReadPosRankSum=-1.415;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:74:74,0,82
chr1	159799599	.	C	CA	3290.77	PASS	AC=2;AF=1;AN=2;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.91;SOR=5.221	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3319,322,0
chr1	159826561	.	CCA	C	27.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.63;ReadPosRankSum=-1.282;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,126
chr1	159860547	.	C	CT	35.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.3;QD=11.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:62,9,0
chr1	159897681	.	TAA	T,TA	1974.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;MQRankSum=0.242;QD=26.69;ReadPosRankSum=1.66;SOR=1.347	GT:AD:DP:GQ:PL	1/2:3,48,23:94:99:2003,383,365,1118,0,966
chr1	160090681	.	CCCTT	C	1986.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=28.76;SOR=1.714	GT:AD:DP:GQ:PL	1/1:0,45:45:99:2015,135,0
chr1	160098927	.	A	AG	4718.77	PASS	AC=2;AF=1;AN=2;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;QD=28.22;SOR=1.347	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4747,385,0
chr1	160109408	.	A	AC	1743.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0;DP=138;ExcessHet=3.0103;FS=3.67;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.13;QD=12.92;ReadPosRankSum=1.01;SOR=0.39	GT:AD:DP:GQ:PL	0/1:75,60:135:99:1772,0,2262
chr1	160126150	.	AG	A	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.79;ReadPosRankSum=-0.431;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,138
chr1	160151345	.	CA	C	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=5.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=0.993;SOR=3.126	GT:AD:DP:GQ:PL	0/1:9,8:29:99:141,0,186
chr1	160151624	.	G	GC	4779.77	PASS	AC=2;AF=1;AN=2;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=33.42;SOR=1.39	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4808,433,0
chr1	160155876	.	C	CAAAAAAAA	94.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.7;ReadPosRankSum=1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:26:123,0,26
chr1	160165442	.	G	GC	270.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.527;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=4.976;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.14;QD=6.45;ReadPosRankSum=-1.369;SOR=0.135	GT:AD:DP:GQ:PL	0/1:25,17:46:99:299,0,598
chr1	160170868	.	CTAACCCA	C	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	160246989	.	CT	C	95.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.24;QD=3.42;ReadPosRankSum=-0.381;SOR=0.42	GT:AD:DP:GQ:PL	0/1:18,10:31:99:124,0,394
chr1	160283209	.	AT	A	92.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.41;QD=15.47;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:121,18,0
chr1	160493178	.	AT	A	137.9	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.94;MQRankSum=0.493;QD=13.79;ReadPosRankSum=-0.282;SOR=1.022	GT:AD:DP:GQ:PL	1/1:2,8:10:15:166,15,0
chr1	160517983	.	AG	A	1225.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=2.01;QD=11.79;ReadPosRankSum=-1.265;SOR=0.898	GT:AD:DP:GQ:PL	0/1:59,45:104:99:1254,0,1774
chr1	160582035	.	AT	A	105.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.64;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:134,18,0
chr1	160650792	.	GC	G	1017.77	PASS	AC=2;AF=1;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1046,96,0
chr1	160722997	.	C	CA	185.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.65;ReadPosRankSum=0.392;SOR=0.914	GT:AD:DP:GQ:PL	0/1:54,16:70:99:214,0,1074
chr1	160766179	.	C	CT	4381.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;MQRankSum=0.18;QD=26.08;ReadPosRankSum=0.712;SOR=4.382	GT:AD:DP:GQ:PL	1/1:1,167:168:99:4410,478,0
chr1	160851594	.	GAAAAAAA	G	457.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=29.09;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,13:13:37:486,37,0
chr1	160969008	.	T	TG	2015.77	PASS	AC=2;AF=1;AN=2;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.05;SOR=0.793	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2044,189,0
chr1	161011051	.	CA	C	189.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.34;MQRankSum=0.552;QD=11.16;ReadPosRankSum=-0.504;SOR=0.9	GT:AD:DP:GQ:PL	0/1:7,10:37:99:143,0,162
chr1	161023252	.	TTCTCTC	T	296.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.528;QD=6.45;ReadPosRankSum=0.912;SOR=0.558	GT:AD:DP:GQ:PL	0/1:37,9:52:99:325,0,1483
chr1	161023281	.	TC	T	1304.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.69;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=1.42;QD=26.63;ReadPosRankSum=-0.035;SOR=0.593	GT:AD:DP:GQ:PL	0/1:19,30:55:99:1333,0,667
chr1	161023283	.	TCTCTCTCTCTCTC	T	786.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=1.13;QD=14.3;ReadPosRankSum=-0.051;SOR=0.287	GT:AD:DP:GQ:PL	0/1:25,30:55:99:815,0,874
chr1	161030059	.	CA	C,CAA	169.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=2.808;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-0.255;SOR=0.223	GT:AD:DP:GQ:PL	1/2:2,5,6:15:70:198,125,216,70,0,122
chr1	161047125	.	CTATA	C	1256.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=25.19;SOR=6.804	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1285,87,0
chr1	161089450	.	C	CTAAACT	1624.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0;DP=106;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.9;QD=17.1;ReadPosRankSum=-1.079;SOR=0.835	GT:AD:DP:GQ:PL	0/1:51,44:95:99:1653,0,3808
chr1	161091814	.	T	TA	92.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.861;QD=4.64;ReadPosRankSum=0.628;SOR=0.446	GT:AD:DP:GQ:PL	0/1:9,11:24:99:121,0,174
chr1	161137347	.	CTT	C	350.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.04;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=1.84;QD=13.49;ReadPosRankSum=-1.041;SOR=0.669	GT:AD:DP:GQ:PL	0/1:13,13:55:99:379,0,412
chr1	161142230	.	GA	G	270.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=0.861;QD=11.28;ReadPosRankSum=1.52;SOR=1.27	GT:AD:DP:GQ:PL	0/1:9,15:24:99:299,0,157
chr1	161181960	.	G	GA	27.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.63;ReadPosRankSum=0.385;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:50:56,0,50
chr1	161184059	.	C	CTG	452.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.93;ClippingRankSum=0;DP=128;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0;QD=7.55;ReadPosRankSum=0.055;SOR=1.27	GT:AD:DP:GQ:PL	0/1:40,20:78:99:481,0,1189
chr1	161192845	.	CCA	C	294.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.99;QD=6.02;ReadPosRankSum=-0.736;SOR=1.545	GT:AD:DP:GQ:PL	0/1:32,17:49:99:323,0,737
chr1	161253684	.	AT	A	14.91	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.98;ReadPosRankSum=0;SOR=2.245	GT:AD:DP:GQ:PL	0/1:3,2:5:43:43,0,75
chr1	161284224	.	A	AGT	2032.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.42;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.29;QD=14.02;ReadPosRankSum=0.868;SOR=0.465	GT:AD:DP:GQ:PL	0/1:90,55:145:99:2061,0,3503
chr1	161293485	.	T	TTA	132.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.125;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=10.494;MLEAC=1;MLEAF=0.5;MQ=59.3;MQRankSum=-1.511;QD=2.37;ReadPosRankSum=2.28;SOR=3.113	GT:AD:DP:GQ:PL	0/1:40,16:56:99:161,0,1850
chr1	161310139	.	T	TTTTGC	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.524;QD=24.55;ReadPosRankSum=0;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:99:151,0,120
chr1	161310261	.	C	CA	415.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=5.906;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-0.823;QD=8.32;ReadPosRankSum=-0.19;SOR=0.093	GT:AD:DP:GQ:PL	0/1:27,23:64:99:444,0,482
chr1	161326883	.	G	GTTAA	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:58:78,0,58
chr1	161332091	.	CT	C	144.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=2.628;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.3;QD=2.1;ReadPosRankSum=-1.326;SOR=0.368	GT:AD:DP:GQ:PL	0/1:54,15:87:99:173,0,1204
chr1	161565761	.	AT	A	65.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr1	161600287	.	AT	A	285.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.53;MQRankSum=-0.028;QD=9.53;ReadPosRankSum=1.28;SOR=0.473	GT:AD:DP:GQ:PL	0/1:17,13:30:99:314,0,442
chr1	161722779	.	C	CAAA	2193.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DP=149;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.503;QD=20.31;ReadPosRankSum=-0.512;SOR=1.099	GT:AD:DP:GQ:PL	0/1:57,51:136:99:2222,0,2125
chr1	161823197	.	G	GT	1492.77	PASS	AC=2;AF=1;AN=2;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=32.45;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1521,138,0
chr1	161830214	.	GTA	G	140.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.6;ReadPosRankSum=1.35;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:91:169,0,91
chr1	161976272	.	G	GA	3440.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DP=193;ExcessHet=3.0103;FS=4.416;MLEAC=2;MLEAF=1;MQ=60.28;MQRankSum=0.296;QD=24.23;ReadPosRankSum=0.493;SOR=0.236	GT:AD:DP:GQ:PL	1/1:11,131:160:99:3468,225,0
chr1	162560360	.	TTC	T	184.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.34;ReadPosRankSum=0.721;SOR=0.333	GT:AD:DP:GQ:PL	0/1:66,13:79:99:213,0,2064
chr1	162730759	.	T	TA	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.35;ReadPosRankSum=-0.524;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:31:60,0,31
chr1	162736821	.	G	GA	26.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr1	162750210	.	CTT	C	194.84	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.2;SOR=3.258	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,4:4:18:1|1:162750208_C_T:223,18,0
chr1	162768939	.	TA	T	76.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr1	163042020	.	C	CAA	185.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=34.09;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr1	163296194	.	T	TAA	47.41	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.8;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:7:74,7,0
chr1	163298768	.	T	TA	1107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.57;QD=14.2;ReadPosRankSum=0.369;SOR=0.902	GT:AD:DP:GQ:PL	0/1:23,55:100:99:1136,0,321
chr1	163308027	.	T	TA	32.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=10.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:59,9,0
chr1	163324929	.	C	CT	152.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.47;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:181,18,0
chr1	164559449	.	G	GAA	294.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=0;QD=14.04;ReadPosRankSum=1;SOR=1.885	GT:AD:DP:GQ:PL	0/1:10,11:35:99:323,0,334
chr1	164781110	.	A	AATATAAG	1209.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.8;SOR=4.712	GT:AD:DP:GQ:PL	1/1:0,21:21:84:1238,84,0
chr1	165180229	.	TA	T	153.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=30.78;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:182,15,0
chr1	165218476	.	AAGAGATTACTCTG	A	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=1.42;SOR=0.148	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,344
chr1	165370367	.	T	TA	282.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.524;QD=18.85;ReadPosRankSum=0.343;SOR=0.136	GT:AD:DP:GQ:PL	0/1:6,9:15:99:311,0,145
chr1	165376227	.	C	CCG	2041.77	PASS	AC=2;AF=1;AN=2;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=2.985	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,46:46:99:1|1:165376227_C_CCG:2070,138,0
chr1	165376231	.	CTG	C	1996.77	PASS	AC=2;AF=1;AN=2;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=3.16	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,44:44:99:1|1:165376227_C_CCG:2025,135,0
chr1	165378729	.	TACAC	T,TAC	1308.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.28;QD=27.14;SOR=4.804	GT:AD:DP:GQ:PL	1/2:0,15,16:34:99:1337,539,440,592,0,547
chr1	165621129	.	C	CAAAAAA	605.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.71;MQRankSum=0;QD=23.97;ReadPosRankSum=0.965;SOR=4.407	GT:AD:DP:GQ:PL	1/1:1,5:18:38:389,38,0
chr1	165621322	.	TATTATC	T	1339.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.186;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.42;ReadPosRankSum=-0.372;SOR=0.447	GT:AD:DP:GQ:PL	0/1:34,35:69:99:1368,0,2652
chr1	165630784	.	C	CA	200.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.94;QD=28.68;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,7:10:29:202,29,0
chr1	165652540	.	GTTAA	G	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-0.842;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,172
chr1	165664743	.	TTTTTC	T	65.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.67;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=7.659;MLEAC=1;MLEAF=0.5;MQ=57.9;MQRankSum=0.962;QD=3.13;ReadPosRankSum=-0.641;SOR=0.041	GT:AD:DP:GQ:PL	0/1:12,9:21:94:94,0,222
chr1	165664744	.	TTTTC	T	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=2.73;MLEAC=1;MLEAF=0.5;MQ=57.9;MQRankSum=-1.313;QD=2.13;ReadPosRankSum=0.896;SOR=1.483	GT:AD:DP:GQ:PL	0/1:14,7:21:73:73,0,188
chr1	165859640	.	G	GTGT	1127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.814;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.52;QD=17.9;ReadPosRankSum=-0.985;SOR=0.892	GT:AD:DP:GQ:PL	0/1:33,30:63:99:1156,0,1254
chr1	166829320	.	C	CT	302.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.879;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.63;ReadPosRankSum=1.95;SOR=0.527	GT:AD:DP:GQ:PL	0/1:3,11:14:55:331,0,55
chr1	166831703	.	C	CA	472.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=0.174;SOR=0.302	GT:AD:DP:GQ:PL	0/1:15,19:34:99:501,0,367
chr1	166838866	.	A	AATTTT	694.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.51;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.96;ReadPosRankSum=0.788;SOR=0.976	GT:AD:DP:GQ:PL	0/1:11,18:29:99:723,0,602
chr1	166944256	.	TTC	T	119.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.9;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.11;ReadPosRankSum=1.01;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:99:148,0,142
chr1	167094889	.	GA	G	425.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.74;ReadPosRankSum=-0.725;SOR=0.105	GT:AD:DP:GQ:PL	0/1:11,13:24:99:454,0,372
chr1	167353258	.	AT	A	793.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.074;ClippingRankSum=0;DP=139;ExcessHet=3.0103;FS=3.569;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=2.25;QD=6.96;ReadPosRankSum=-0.893;SOR=1.175	GT:AD:DP:GQ:PL	0/1:65,49:118:99:822,0,1389
chr1	167381640	.	A	AG	648.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.9;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=3.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=-1.548;SOR=0.16	GT:AD:DP:GQ:PL	0/1:23,20:43:99:677,0,778
chr1	167381696	.	CTTTGA	C	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=-0.12;SOR=1.911	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,327
chr1	167382399	.	AGTGT	A	834.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=4.019;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=1.26;QD=23.85;ReadPosRankSum=-2.569;SOR=0.215	GT:AD:DP:GQ:PL	0/1:14,21:43:99:863,0,602
chr1	167385178	.	G	GA	203.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=1.62;SOR=0.42	GT:AD:DP:GQ:PL	0/1:12,11:26:99:232,0,132
chr1	167385324	.	TA	T	110.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.085;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=3.139;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=0.959;QD=6.92;ReadPosRankSum=-0.579;SOR=0.129	GT:AD:DP:GQ:PL	0/1:8,8:19:98:139,0,98
chr1	167673738	.	T	TA	153.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.12;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.99;ReadPosRankSum=0.033;SOR=1.473	GT:AD:DP:GQ:PL	0/1:12,10:22:99:182,0,231
chr1	167802982	.	CA	C	43.1	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=10.77;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:11:71,11,0
chr1	167823892	.	CAT	C	119.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.566;QD=17.11;ReadPosRankSum=-0.652;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:99:148,0,116
chr1	167839876	.	CA	C	16.01	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.2;ReadPosRankSum=0.524;SOR=0.859	GT:AD:DP:GQ:PL	0/1:2,3:5:16:44,0,16
chr1	167862933	.	CA	C	13.11	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=0;QD=3.28;ReadPosRankSum=-0.319;SOR=1.609	GT:AD:DP:GQ:PL	1/1:1,3:4:1:38,1,0
chr1	167985326	.	TG	T	282.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.85;ReadPosRankSum=-0.245;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,10:15:99:311,0,133
chr1	168053856	.	GTCAC	G	115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.699;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-1.947;SOR=0.269	GT:AD:DP:GQ:PL	0/1:8,4:12:99:144,0,479
chr1	168057030	.	CT	C	119.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=4.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-1.369;SOR=0.074	GT:AD:DP:GQ:PL	0/1:8,5:13:99:148,0,234
chr1	168165767	.	CT	C	782.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.32;QD=7.91;ReadPosRankSum=-0.081;SOR=0.748	GT:AD:DP:GQ:PL	0/1:54,45:118:99:811,0,1109
chr1	168206118	.	GTTTAA	G	3268.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.14;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;MQRankSum=0.247;QD=27.41;ReadPosRankSum=0.593;SOR=4.434	GT:AD:DP:GQ:PL	1/1:1,75:76:99:3297,160,0
chr1	168262522	.	AGT	A,AGTGT	605.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.64;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.23;MQRankSum=0.53;QD=20.19;ReadPosRankSum=0.396;SOR=1.329	GT:AD:DP:GQ:PL	1/2:4,15,11:41:99:634,191,426,429,0,683
chr1	168665747	.	C	CT	8063.77	PASS	AC=2;AF=1;AN=2;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=24.18;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,203:203:99:8092,613,0
chr1	168670136	.	TGTGTGTGTGG	T	330.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.445;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=-0.279;SOR=0.495	GT:AD:DP:GQ:PL	0/1:10,13:23:99:359,0,290
chr1	169075857	.	C	CCCGCCG	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=-0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:67:81,0,67
chr1	169079805	.	CT	C	267.74	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.669;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=9.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.24;ReadPosRankSum=-0.483;SOR=2.387	GT:AD:DP:GQ:PL	0/1:18,19:66:99:295,0,370
chr1	169159760	.	C	CT	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.15;ReadPosRankSum=-0.524;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:33:64,0,33
chr1	169160036	.	CTTTTTT	C	159.77	PASS	AC=1;AF=0.5;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=28.89;SOR=3.611	GT:AD:DP:GQ:PL	0/1:0,3:5:16:129,0,16
chr1	169279196	.	T	TA	1571.77	PASS	AC=2;AF=1;AN=2;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=28.07;SOR=2.387	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1600,174,0
chr1	169338520	.	A	AT	61.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:89,12,0
chr1	169349608	.	C	CTA	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.41;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	169447008	.	G	GA	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.36;ReadPosRankSum=1.2;SOR=0.693	GT:AD:DP:GQ:PL	0/1:13,6:21:73:73,0,256
chr1	169484442	.	CT	C	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.21;ReadPosRankSum=0.494;SOR=0.368	GT:AD:DP:GQ:PL	0/1:8,5:13:83:83,0,179
chr1	169526261	.	C	CA	126.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.85;ReadPosRankSum=1.24;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,6:8:36:155,0,36
chr1	169559333	.	AT	A	2511.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0;DP=143;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.03;QD=18.2;ReadPosRankSum=-1.159;SOR=0.43	GT:AD:DP:GQ:PGT:PID:PL	0/1:70,68:138:99:0|1:169559326_G_A:2540,0,3874
chr1	169560727	.	T	TA,TAA	791.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.28;MQRankSum=0.365;QD=25.54;ReadPosRankSum=1.18;SOR=2.584	GT:AD:DP:GQ:PL	1/2:1,10,20:31:99:820,457,396,179,0,136
chr1	169572543	.	CTCTGTGTG	C	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=5.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.78;ReadPosRankSum=0.916;SOR=0.027	GT:AD:DP:GQ:PL	0/1:11,4:15:70:70,0,433
chr1	169572545	.	CTGTGTGTG	C	367.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.6;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.43;ReadPosRankSum=-0.044;SOR=2.147	GT:AD:DP:GQ:PL	0/1:8,10:18:99:396,0,306
chr1	169672595	.	GA	G	203.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.06;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=0.772;QD=9.7;ReadPosRankSum=-0.788;SOR=0.301	GT:AD:DP:GQ:PL	0/1:8,13:25:99:232,0,146
chr1	169679472	.	G	GCT	258.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.525;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.27;SOR=0.392	GT:AD:DP:GQ:PL	0/1:12,8:20:99:287,0,462
chr1	169699466	.	CA	C	495.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=3.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.009;SOR=0.122	GT:AD:DP:GQ:PL	0/1:24,28:52:99:524,0,454
chr1	169699839	.	G	GT	161.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=0.822;QD=9.52;ReadPosRankSum=0.065;SOR=0.527	GT:AD:DP:GQ:PL	0/1:8,9:23:99:190,0,129
chr1	169792391	.	CAA	C	23.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.16;ReadPosRankSum=1.3;SOR=0.18	GT:AD:DP:GQ:PL	0/1:8,3:11:52:52,0,247
chr1	169795214	.	CT	C	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=8.264;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.16;ReadPosRankSum=1.7;SOR=2.262	GT:AD:DP:GQ:PL	0/1:24,13:37:99:219,0,533
chr1	169823296	.	G	GCTTGA	454.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=6.607;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=1.01;QD=22.74;ReadPosRankSum=-0.342;SOR=0.049	GT:AD:DP:GQ:PL	0/1:9,11:20:99:483,0,559
chr1	169891056	.	CT	C	93.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=18.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:122,15,0
chr1	169923041	.	G	GT	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.986;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.29;QD=6.67;ReadPosRankSum=0.402;SOR=1.214	GT:AD:DP:GQ:PL	0/1:13,9:22:99:175,0,279
chr1	169947146	.	C	CA	1049.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.241;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0;QD=23.33;ReadPosRankSum=-0.143;SOR=2.531	GT:AD:DP:GQ:PL	1/1:4,41:56:55:1023,55,0
chr1	170001151	.	ATACTCATT	A	2847.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=5.19;ClippingRankSum=0;DP=156;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=2;QD=19.24;ReadPosRankSum=1.33;SOR=0.934	GT:AD:DP:GQ:PL	0/1:73,75:148:99:2876,0,4138
chr1	170501521	.	AC	A	109.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.45;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.816;SOR=0.148	GT:AD:DP:GQ:PL	0/1:4,4:8:99:138,0,138
chr1	170927570	.	C	CT	164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.458;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.32;ReadPosRankSum=0.246;SOR=0.916	GT:AD:DP:GQ:PL	0/1:18,13:43:99:193,0,339
chr1	170993440	.	A	ACGG	765.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-0.941;QD=22.52;ReadPosRankSum=-1.604;SOR=2.517	GT:AD:DP:GQ:PL	0/1:17,17:34:99:794,0,771
chr1	171301043	.	G	GA	373.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.25;ReadPosRankSum=0.032;SOR=0.368	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,9:23:99:0|1:171301033_C_G:402,0,496
chr1	171487092	.	TG	T	158.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr1	171514875	.	T	TATTC	397.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=1.34;QD=24.86;ReadPosRankSum=-1.19;SOR=0.269	GT:AD:DP:GQ:PL	0/1:5,11:16:99:426,0,207
chr1	171519128	.	GT	G	47.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=11.76;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:75,12,0
chr1	171519605	.	CT	C	39.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:66,9,0
chr1	171558447	.	GT	G	305.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.572;QD=10.19;ReadPosRankSum=-0.327;SOR=1.318	GT:AD:DP:GQ:PL	0/1:12,18:55:99:334,0,197
chr1	171560512	.	G	GT	54.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.21;QD=9.16;ReadPosRankSum=0.967;SOR=2.303	GT:AD:DP:GQ:PL	0/1:1,5:6:5:82,0,5
chr1	172001666	.	CTT	C	222.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.393;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.709;QD=8.57;ReadPosRankSum=1.83;SOR=1.027	GT:AD:DP:GQ:PL	0/1:14,12:46:99:251,0,514
chr1	172222629	.	TCTCTCCTCTC	T,TCTCTC	476.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=26.73;SOR=5.136	GT:AD:DP:GQ:PL	1/2:0,5,7:12:99:505,294,278,211,0,189
chr1	172399346	.	TAA	T	939.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.03;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=8.548;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=2.65;QD=13.05;ReadPosRankSum=0.886;SOR=2.418	GT:AD:DP:GQ:PL	0/1:45,27:72:99:968,0,1841
chr1	172400009	.	AT	A	81.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.43;ReadPosRankSum=1.9;SOR=1.981	GT:AD:DP:GQ:PL	0/1:7,4:11:99:110,0,206
chr1	172577864	.	CT	C	316.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=11.276;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.05;QD=3.96;ReadPosRankSum=-0.792;SOR=1.706	GT:AD:DP:GQ:PL	0/1:56,24:109:99:345,0,1258
chr1	173490407	.	TAA	T	452.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.64;ReadPosRankSum=0.82;SOR=0.235	GT:AD:DP:GQ:PL	0/1:4,16:27:83:436,0,83
chr1	173490616	.	CTATATA	C	147.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.73;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr1	173794587	.	CATTATT	C	264.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=33.75;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,5:7:16:227,16,0
chr1	175116046	.	C	CT	514.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=7.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.8;ReadPosRankSum=1.27;SOR=0.688	GT:AD:DP:GQ:PL	0/1:5,21:43:64:466,0,64
chr1	175129945	.	TC	T	5342.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.09;MQRankSum=1.04;QD=27.5;SOR=0.738	GT:AD:DP:GQ:PGT:PID:PL	1/1:8,135:143:83:1|1:175129945_TC_T:5371,83,0
chr1	175129947	.	TTCTTCTTG	T	5340.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61;MQRankSum=1.04;QD=34.62;SOR=0.738	GT:AD:DP:GQ:PGT:PID:PL	1/1:8,135:143:82:1|1:175129945_TC_T:5369,82,0
chr1	175324518	.	GCA	G	268.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.8;ReadPosRankSum=-0.516;SOR=1.426	GT:AD:DP:GQ:PGT:PID:PL	0/1:9,7:16:99:0|1:175324518_GCA_G:297,0,354
chr1	175376019	.	AG	A	103.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=-0.876;SOR=0.18	GT:AD:DP:GQ:PL	0/1:2,5:7:40:132,0,40
chr1	176050430	.	GA	G	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.21;ReadPosRankSum=1.08;SOR=0.962	GT:AD:DP:GQ:PL	0/1:36,15:65:99:192,0,766
chr1	176103053	.	TAC	T	646.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.77;ReadPosRankSum=-0.776;SOR=0.195	GT:AD:DP:GQ:PL	0/1:23,18:41:99:675,0,893
chr1	176129391	.	CTTTT	C	1954.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0;DP=216;ExcessHet=3.0103;FS=11.742;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0;QD=35.89;ReadPosRankSum=1.1;SOR=0.109	GT:AD:DP:GQ:PL	0/1:22,22:165:99:1399,0,1529
chr1	176665102	.	ATGTGTGTGTGTGTGTGTGTG	A	1605.77	PASS	AC=2;AF=1;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.32;QD=33.96;SOR=5.186	GT:AD:DP:GQ:PL	1/1:0,37:41:99:1634,124,0
chr1	176671912	.	TGAGAGAGA	T	454.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.295;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=1.92;QD=20.67;ReadPosRankSum=2.88;SOR=1.708	GT:AD:DP:GQ:PL	0/1:4,18:23:80:483,0,80
chr1	176681165	.	ATGTG	A,ATG	993.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.23;MQRankSum=0.359;QD=28.39;ReadPosRankSum=-1.951;SOR=2.147	GT:AD:DP:GQ:PL	1/2:2,7,26:37:99:1022,722,803,183,0,146
chr1	176809540	.	A	AAAATTATTAGCTTTATTGGCAGTTGCTGCTGTAGGCGTATCCGTAGCTGGCGCAACTCCACAAACTCAATT	70.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.92;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.62;MQRankSum=-2.838;QD=5.9;ReadPosRankSum=-2.838;SOR=0.582	GT:AD:DP:GQ:PL	0/1:9,3:12:99:99,0,2357
chr1	176913215	.	AT	A	316.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-0.39;QD=9.32;ReadPosRankSum=0.518;SOR=0.49	GT:AD:DP:GQ:PL	0/1:15,19:45:99:345,0,287
chr1	177250855	.	T	TACAC	42.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:6:69,6,0
chr1	177916890	.	A	AAGGGACAGGGAGGGGAGGTGAGGGG	365.77	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.71;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:29:394,29,0
chr1	177930027	.	G	GAGGGATGTAGAACTTCATGGGTGCTTTGGGACC	5138.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0;DP=271;ExcessHet=3.0103;FS=3.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=29.2;ReadPosRankSum=-4.226;SOR=0.987	GT:AD:DP:GQ:PL	0/1:91,85:176:99:5167,0,3411
chr1	177930508	.	AG	A	22.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.8;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,2:6:51:51,0,115
chr1	178491785	.	C	CT	76.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.366;SOR=0.18	GT:AD:DP:GQ:PL	0/1:2,5:7:14:105,0,14
chr1	178514560	.	A	AT	1601.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=174;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=2.05;QD=9.65;ReadPosRankSum=-0.461;SOR=0.816	GT:AD:DP:GQ:PL	0/1:96,70:166:99:1630,0,2264
chr1	178745798	.	CT	C	346.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0.772;QD=8.89;ReadPosRankSum=0.084;SOR=0.582	GT:AD:DP:GQ:PL	0/1:17,22:49:99:375,0,353
chr1	179080115	.	CTTT	C,CT	422.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.78;MQRankSum=-0.158;QD=23.49;ReadPosRankSum=0.114;SOR=2.494	GT:AD:DP:GQ:PL	1/2:2,8,8:22:99:451,121,156,105,0,102
chr1	179091050	.	ATTTT	A	624.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.72;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.88;ReadPosRankSum=-1.564;SOR=4.615	GT:AD:DP:GQ:PL	1/1:1,8:20:38:568,38,0
chr1	179198767	.	ACGC	A	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=1.15;SOR=0.916	GT:AD:DP:GQ:PL	0/1:1,3:4:35:123,0,35
chr1	179312249	.	AT	A	571.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:48:600,48,0
chr1	179317895	.	ATGTGTGTGTGTGTGTGTGTGTGTGTGTG	A,ATG	2472.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.15;QD=29.53;SOR=2.226	GT:AD:DP:GQ:PL	1/2:0,18,42:60:99:2501,1372,1232,585,0,405
chr1	179335499	.	C	CT	200.98	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.86;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=16.75;ReadPosRankSum=0;SOR=1.329	GT:AD:DP:GQ:PL	1/1:1,11:12:13:229,13,0
chr1	179380472	.	GT	G	708.77	PASS	AC=2;AF=1;AN=2;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.44;SOR=5.353	GT:AD:DP:GQ:PL	1/1:0,29:29:87:737,87,0
chr1	179401564	.	CT	C	509.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=3.984;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=1.28;QD=16.44;ReadPosRankSum=-1.081;SOR=2.636	GT:AD:DP:GQ:PL	0/1:5,26:33:28:538,0,28
chr1	179418025	.	A	AT	12.36	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.12;ReadPosRankSum=-0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:12:40,0,12
chr1	179462338	.	A	ACTAT	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.75;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	179502761	.	CT	C	32.1	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=8.03;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:11:60,11,0
chr1	179504025	.	AAAG	A	1094.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=12.553;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=0.416;QD=29.87;ReadPosRankSum=0.179;SOR=2.607	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,26:28:3:0|1:179504025_AAAG_A:1121,0,3
chr1	179590029	.	C	CA	169.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.847;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=1.05;QD=8.94;ReadPosRankSum=-0.881;SOR=0.223	GT:AD:DP:GQ:PL	0/1:10,9:21:99:198,0,180
chr1	179853651	.	CAA	C	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,89
chr1	179876726	.	CTTTATATATATATATATATATATATATGTATATA	C	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	179877048	.	C	CT,CTT	644.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.93;MQRankSum=-0.403;QD=12.4;ReadPosRankSum=0.567;SOR=0.636	GT:AD:DP:GQ:PL	1/2:11,21,20:67:82:673,176,282,82,0,371
chr1	180135757	.	TG	T	1450.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.141;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.67;QD=15.27;ReadPosRankSum=-0.787;SOR=0.968	GT:AD:DP:GQ:PL	0/1:45,50:95:99:1479,0,1308
chr1	180144291	.	C	CA	431.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=1.26;QD=17.27;ReadPosRankSum=-1.425;SOR=1.666	GT:AD:DP:GQ:PL	0/1:6,19:35:52:438,0,52
chr1	180155382	.	AG	A	1120.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.42;QD=28.65;SOR=1.981	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,26:26:78:1|1:180155376_C_G:1149,78,0
chr1	180159797	.	TC	T	3595.77	PASS	AC=2;AF=1;AN=2;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.59;QD=34.91;SOR=3.067	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3624,310,0
chr1	180757007	.	C	CT	936.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.5;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.57;SOR=0.493	GT:AD:DP:GQ:PL	0/1:39,47:91:99:965,0,684
chr1	180757117	.	G	GT	820.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=4.712	GT:AD:DP:GQ:PL	1/1:0,21:21:63:849,63,0
chr1	180897792	.	ATGC	A	268.8	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=32.44;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr1	180949471	.	A	AC	71.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:98,9,0
chr1	180962825	.	G	GA	68.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr1	181690750	.	CT	C	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.17;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.44;ReadPosRankSum=-0.976;SOR=2.584	GT:AD:DP:GQ:PL	0/1:7,6:13:73:73,0,137
chr1	181714466	.	AT	A	181.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.55;QD=2.19;ReadPosRankSum=0.004;SOR=0.886	GT:AD:DP:GQ:PL	0/1:63,20:90:99:210,0,1369
chr1	181731667	.	T	TC	6932.77	PASS	AC=2;AF=1;AN=2;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=34.78;SOR=3.031	GT:AD:DP:GQ:PL	1/1:0,171:183:99:6961,671,0
chr1	181752783	.	T	TG	728.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=9.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=0.197;SOR=2.131	GT:AD:DP:GQ:PL	0/1:30,22:59:99:757,0,821
chr1	181752923	.	AAGCTT	A	3594.77	PASS	AC=2;AF=1;AN=2;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.57;QD=28.69;SOR=1.206	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3623,253,0
chr1	181759443	.	T	TTTA	935.77	PASS	AC=1;AF=0.5;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=28.86;SOR=6.358	GT:AD:DP:GQ:PL	0/1:0,8:23:22:622,0,22
chr1	182429295	.	CTG	C	1011.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=111;ExcessHet=3.0103;FS=4.474;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0;QD=15.1;ReadPosRankSum=0.039;SOR=1.426	GT:AD:DP:GQ:PL	0/1:33,34:73:99:1040,0,880
chr1	182873669	.	CGTGTGTGT	C	360.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.08;ReadPosRankSum=-0.745;SOR=3.912	GT:AD:DP:GQ:PL	0/1:1,8:14:64:361,0,64
chr1	182908113	.	CA	C	11.12	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.78;ReadPosRankSum=0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:39:39,0,44
chr1	182920665	.	G	GT	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.68;ReadPosRankSum=1.45;SOR=1.329	GT:AD:DP:GQ:PL	0/1:6,4:10:65:65,0,102
chr1	183077296	.	A	AG	471.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.434;SOR=1.27	GT:AD:DP:GQ:PL	0/1:20,15:35:99:500,0,668
chr1	183085611	.	C	CA	371.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.72;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.11;QD=8.85;ReadPosRankSum=1.03;SOR=0.259	GT:AD:DP:GQ:PL	0/1:22,20:47:99:400,0,370
chr1	183094418	.	A	AC	527.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=1;QD=17.59;ReadPosRankSum=0;SOR=0.25	GT:AD:DP:GQ:PL	0/1:14,16:30:99:556,0,428
chr1	183095185	.	TAA	T	613.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.768;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=4.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.16;ReadPosRankSum=0.906;SOR=2.786	GT:AD:DP:GQ:PL	0/1:10,19:49:99:642,0,317
chr1	183096253	.	T	TATA	535.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.35;ReadPosRankSum=-0.205;SOR=1.329	GT:AD:DP:GQ:PL	0/1:8,14:22:99:564,0,380
chr1	183097605	.	TAAA	T	492.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=-0.516;QD=28.99;ReadPosRankSum=0.475;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,12:17:99:0|1:183097605_TAAA_T:521,0,310
chr1	183097956	.	G	GTTA	1079.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=3.549;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=2.26;QD=16.36;ReadPosRankSum=0.303;SOR=1.455	GT:AD:DP:GQ:PL	0/1:36,30:66:99:1108,0,1513
chr1	183100307	.	C	CAAAA	283.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-1.726;SOR=0.843	GT:AD:DP:GQ:PL	0/1:16,7:41:99:312,0,830
chr1	183100562	.	G	GT	671.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=129;ExcessHet=3.0103;FS=7.533;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=-3.18;QD=6.46;ReadPosRankSum=3.01;SOR=1.722	GT:AD:DP:GQ:PL	0/1:80,24:104:99:700,0,3649
chr1	183100563	.	G	GGT,GTGTGTGT	1797.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=1.979;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.61;MQRankSum=-0.891;QD=32.69;ReadPosRankSum=-0.424;SOR=1.483	GT:AD:DP:GQ:PL	1/2:14,31,10:66:99:1826,997,1416,586,0,3083
chr1	183101427	.	AAAT	A	205.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.59;MQRankSum=-0.674;QD=17.15;ReadPosRankSum=2.07;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,6:12:99:0|1:183101427_AAAT_A:234,0,873
chr1	183104340	.	AT	A	418.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=1.39;SOR=0.495	GT:AD:DP:GQ:PL	0/1:10,23:33:99:447,0,163
chr1	183105855	.	CT	C	202.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=0.965;QD=8.82;ReadPosRankSum=-1.149;SOR=0.99	GT:AD:DP:GQ:PL	0/1:10,13:23:99:231,0,174
chr1	183105897	.	C	CATTG	152.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.025;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=1.24;SOR=0.078	GT:AD:DP:GQ:PL	0/1:6,4:10:99:181,0,272
chr1	183109365	.	AT	A	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=58.01;MQRankSum=-0.748;QD=12.16;ReadPosRankSum=0.799;SOR=2.636	GT:AD:DP:GQ:PL	0/1:6,5:11:99:162,0,209
chr1	183109380	.	C	CAAAAAAAAAAA	205.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.3;MQRankSum=-0.213;QD=29.4;ReadPosRankSum=0.696;SOR=0.446	GT:AD:DP:GQ:PL	0/1:2,5:13:99:192,0,178
chr1	183176970	.	G	GTT	1112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=5.204;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=1.39;QD=13.91;ReadPosRankSum=-0.35;SOR=1.366	GT:AD:DP:GQ:PL	0/1:43,37:135:99:1141,0,1325
chr1	183205523	.	CAA	C	147.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.44;ReadPosRankSum=0;SOR=2.67	GT:AD:DP:GQ:PL	0/1:2,7:12:42:163,0,42
chr1	183230516	.	ATCCGC	A	1891.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=32.88;SOR=3.816	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1920,133,0
chr1	183481943	.	C	CT	443.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.31;ReadPosRankSum=-0.125;SOR=0.293	GT:AD:DP:GQ:PL	0/1:6,23:48:61:466,0,61
chr1	183540215	.	TA	T	445.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.29;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,13:13:39:474,39,0
chr1	183849500	.	A	AAAAC	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	183875922	.	TC	T	171.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.47;ReadPosRankSum=0.792;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,6:8:51:200,0,51
chr1	183947757	.	G	GA	572.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;MQRankSum=0.417;QD=23.87;ReadPosRankSum=-1.085;SOR=4.977	GT:AD:DP:GQ:PL	1/1:1,23:24:48:601,48,0
chr1	184537506	.	ACTC	A	2347.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=131;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.77;QD=18.78;ReadPosRankSum=1.74;SOR=0.561	GT:AD:DP:GQ:PL	0/1:63,62:125:99:2376,0,2786
chr1	184663643	.	TA	T	1108.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.63;QD=8.34;ReadPosRankSum=-0.735;SOR=0.739	GT:AD:DP:GQ:PL	0/1:75,58:133:99:1137,0,1755
chr1	184688237	.	CGT	C	143.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=1.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3;ReadPosRankSum=0.083;SOR=0.277	GT:AD:DP:GQ:PL	0/1:39,9:48:99:172,0,1275
chr1	184692999	.	T	TAA	204.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.714;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.73;QD=7.58;ReadPosRankSum=-0.496;SOR=1.578	GT:AD:DP:GQ:PL	0/1:20,7:41:99:233,0,447
chr1	184706212	.	GT	G	591.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.844;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=1.33;SOR=1.27	GT:AD:DP:GQ:PL	0/1:23,20:43:99:620,0,713
chr1	184707018	.	G	GA	85.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.26;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:113,12,0
chr1	185120927	.	G	GA	57.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.75;ReadPosRankSum=1.6;SOR=1.162	GT:AD:DP:GQ:PL	0/1:15,6:21:86:86,0,270
chr1	185270777	.	C	CT	817.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=9.547;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.02;QD=15.43;ReadPosRankSum=0.668;SOR=3.126	GT:AD:DP:GQ:PL	0/1:26,27:53:99:846,0,815
chr1	185834851	.	C	CT	657.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0;DP=143;ExcessHet=3.0103;FS=4.154;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.58;ReadPosRankSum=-0.3;SOR=0.387	GT:AD:DP:GQ:PL	0/1:62,38:129:99:686,0,1194
chr1	185881056	.	T	TAGG	202.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.252;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.6;ReadPosRankSum=-0.973;SOR=2.584	GT:AD:DP:GQ:PL	0/1:7,6:13:99:231,0,342
chr1	185950289	.	TA	T	412.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.789;SOR=0.708	GT:AD:DP:GQ:PL	0/1:18,23:43:99:441,0,390
chr1	185950458	.	GCACA	G	88.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.96;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.04;MQRankSum=0.674;QD=14.79;ReadPosRankSum=-1.036;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,162
chr1	185951573	.	C	CT	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0;QD=2.07;ReadPosRankSum=1.11;SOR=0.346	GT:AD:DP:GQ:PL	0/1:29,9:48:99:107,0,555
chr1	185958586	.	CAAAA	C	550.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.091;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.21;MQRankSum=4.12;QD=9.18;ReadPosRankSum=-0.282;SOR=0.663	GT:AD:DP:GQ:PL	0/1:41,19:60:99:579,0,1540
chr1	186043659	.	ACAG	A	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=1.65;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:89:120,0,89
chr1	186095023	.	T	TA	177.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=1.23;QD=7.73;ReadPosRankSum=-0.062;SOR=0.12	GT:AD:DP:GQ:PL	0/1:13,10:23:99:206,0,257
chr1	186114443	.	CT	C	178.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.098;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.77;ReadPosRankSum=0.586;SOR=0.616	GT:AD:DP:GQ:PL	0/1:12,11:23:99:207,0,257
chr1	186140742	.	C	CTA	175.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.18;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.366;QD=25.11;ReadPosRankSum=-1.068;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,5:7:74:204,0,74
chr1	186147511	.	C	CT	417.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=9.675;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.02;QD=9.72;ReadPosRankSum=-1.082;SOR=3.196	GT:AD:DP:GQ:PL	0/1:21,22:43:99:446,0,381
chr1	186159126	.	T	TA	415.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=1.62;QD=12.6;ReadPosRankSum=0.452;SOR=0.145	GT:AD:DP:GQ:PL	0/1:18,15:33:99:444,0,570
chr1	186646586	.	CTG	C	142.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.86;ReadPosRankSum=-1.068;SOR=0.368	GT:AD:DP:GQ:PL	0/1:4,5:9:99:171,0,127
chr1	186863050	.	C	CAA	73.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.195;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.71;MQRankSum=0;QD=10.56;ReadPosRankSum=1.24;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,4:9:59:102,0,59
chr1	186863385	.	TAA	T	1022.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.59;QD=16.5;ReadPosRankSum=0.149;SOR=0.99	GT:AD:DP:GQ:PL	0/1:34,28:62:99:1051,0,1341
chr1	190068427	.	TACACAC	T	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=1.04;SOR=0.859	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,129
chr1	192335271	.	C	CTAAT	1427.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=4.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.07;ReadPosRankSum=-0.309;SOR=0.284	GT:AD:DP:GQ:PL	0/1:41,38:79:99:1456,0,2166
chr1	192544754	.	C	CT	214.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=30.68;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,7:10:29:212,29,0
chr1	192990035	.	ATTCT	A	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:57:81,0,57
chr1	192991921	.	G	GT	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:192991920_T_G:135,9,0
chr1	193039658	.	C	CT	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=4.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.88;ReadPosRankSum=-1;SOR=0.34	GT:AD:DP:GQ:PL	0/1:45,15:76:99:201,0,846
chr1	193105537	.	TA	T	321.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.45;ReadPosRankSum=0.98;SOR=3.014	GT:AD:DP:GQ:PL	0/1:5,10:15:99:350,0,144
chr1	196311550	.	CTATA	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	196642969	.	C	CTT	1502.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.906;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.68;ReadPosRankSum=-0.496;SOR=0.672	GT:AD:DP:GQ:PL	0/1:38,47:98:99:1531,0,1096
chr1	196697863	.	GCACA	G	175.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.11;ReadPosRankSum=0.967;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,5:7:62:204,0,62
chr1	196883940	.	T	TA	47.56	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.43;MQRankSum=0.524;QD=9.51;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	1/1:1,4:5:7:75,7,0
chr1	197022093	.	TCTCA	T	185.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=28.83;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr1	197030237	.	CT	C	680.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.953;QD=11.54;ReadPosRankSum=-1.066;SOR=0.877	GT:AD:DP:GQ:PL	0/1:27,32:59:99:709,0,600
chr1	197053561	.	T	TAA	429.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.595;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.748;QD=11.62;ReadPosRankSum=0.812;SOR=1.312	GT:AD:DP:GQ:PL	0/1:22,15:65:99:458,0,753
chr1	197060358	.	CTG	C	48.56	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.31;QD=24.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	197064897	.	T	TGTA	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	197097891	.	AAAAT	A	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=1.83;SOR=0.12	GT:AD:DP:GQ:PL	0/1:6,5:11:99:192,0,348
chr1	197104149	.	TA	T	324.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=32.48;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,10:10:30:353,30,0
chr1	197515253	.	ATGTTCAG	A	375.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:404,27,0
chr1	197576307	.	A	AT	538.78	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.974;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.58;MQRankSum=-3.394;QD=19.95;ReadPosRankSum=1.02;SOR=1.542	GT:AD:DP:GQ:PGT:PID:PL	1/1:2,25:27:26:1|1:197576307_A_AT:567,26,0
chr1	197898023	.	C	CAA	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.6;ReadPosRankSum=-0.18;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,6:8:30:153,0,30
chr1	197901206	.	C	CA	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.723;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.56;ReadPosRankSum=0.235;SOR=1.371	GT:AD:DP:GQ:PL	0/1:7,5:12:83:83,0,134
chr1	198201907	.	AT	A	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=-0.769;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,7:10:30:100,0,30
chr1	198717218	.	G	GT	257.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.19;ReadPosRankSum=-0.248;SOR=1.198	GT:AD:DP:GQ:PL	0/1:1,6:21:34:138,0,34
chr1	198723723	.	A	ATAAG	220.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.54;ReadPosRankSum=0.366;SOR=0.527	GT:AD:DP:GQ:PL	0/1:1,6:7:42:249,0,42
chr1	200080464	.	CA	C	107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.99;ReadPosRankSum=0.949;SOR=0.368	GT:AD:DP:GQ:PL	0/1:25,11:43:99:136,0,559
chr1	200143064	.	CT	C	259.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.04;ReadPosRankSum=-0.974;SOR=0.83	GT:AD:DP:GQ:PL	0/1:25,18:57:99:288,0,406
chr1	200182703	.	GGAGGACGCCGGAGAGGAGGCCGGA	G	1700.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.63;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=4.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.25;ReadPosRankSum=1.13;SOR=1.276	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1729,0,1477
chr1	200182709	.	CGCCGGAGAGGAG	C	1103.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.542;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=4.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=-2.079;SOR=0.262	GT:AD:DP:GQ:PL	0/1:45,31:76:99:1132,0,1753
chr1	200312546	.	CAAA	C,CAA	1093.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.16;MQRankSum=0.286;QD=22.79;ReadPosRankSum=0.76;SOR=0.627	GT:AD:DP:GQ:PL	1/2:2,13,33:57:99:1122,679,1105,355,0,263
chr1	200544672	.	CAT	C	130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.533;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.54;ReadPosRankSum=1.23;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	0/1:13,7:20:99:1|0:200544670_CACAT_C:159,0,498
chr1	200549327	.	CTT	C	895.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.836;QD=24.21;ReadPosRankSum=0.267;SOR=2.085	GT:AD:DP:GQ:PL	0/1:14,23:37:99:924,0,493
chr1	200550243	.	GAAAAAAA	G,GAAAAAAAAAAAAAAAAAAAA	1426.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.4;QD=31.63;SOR=3.967	GT:AD:DP:GQ:PL	1/2:0,29,7:39:99:1455,294,200,1162,0,1141
chr1	200558286	.	GA	G	640.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.509;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.889;QD=10.01;ReadPosRankSum=-0.474;SOR=0.77	GT:AD:DP:GQ:PL	0/1:28,36:66:99:669,0,556
chr1	200558650	.	A	AAATATCACTAGTCAAACTT	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	200576045	.	G	GA	202.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.455;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,9:20:67:225,0,67
chr1	200587973	.	G	GA	82.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.83;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=2.35;SOR=2.584	GT:AD:DP:GQ:PL	0/1:4,6:10:68:111,0,68
chr1	200610525	.	TA	T	160.56	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.497;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=0.158;SOR=1.179	GT:AD:DP:GQ:PL	1/1:1,10:11:7:188,7,0
chr1	200708748	.	A	AGCG	26.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-0.674;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,1:2:37:55,0,37
chr1	200776867	.	C	CT	35.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=11.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:62,9,0
chr1	200811313	.	A	AT	114.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.82;SOR=0.399	GT:AD:DP:GQ:PL	0/1:4,7:11:60:143,0,60
chr1	200843307	.	T	TCCCG	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0.366;SOR=0.283	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,353
chr1	200868493	.	GTGTGTGTGCA	G	691.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.07;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=2.98;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=0.885;QD=23.06;ReadPosRankSum=-0.84;SOR=0.174	GT:AD:DP:GQ:PL	0/1:12,18:30:99:720,0,1133
chr1	200876788	.	T	TAA	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.78;ReadPosRankSum=-0.621;SOR=1.863	GT:AD:DP:GQ:PL	0/1:6,4:12:96:96,0,147
chr1	200943793	.	CAGGA	C	4712.77	PASS	AC=2;AF=1;AN=2;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=22.43;SOR=3.528	GT:AD:DP:GQ:PL	1/1:0,106:106:99:4741,319,0
chr1	201042476	.	TCTG	T	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:31:81,0,31
chr1	201043845	.	ACT	A	101.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=0.967;QD=8.48;ReadPosRankSum=0.738;SOR=0.269	GT:AD:DP:GQ:PL	0/1:8,4:12:99:130,0,304
chr1	201169059	.	T	TA	119.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:147,12,0
chr1	201195456	.	C	CT	133.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	201195811	.	CA	C	13.09	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.36;ReadPosRankSum=-0.431;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:17:41,0,17
chr1	201286614	.	GA	G	1127.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.51;SOR=3.69	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,27:27:81:1|1:201286614_GA_G:1156,81,0
chr1	201293512	.	TG	T	545.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.503;SOR=0.582	GT:AD:DP:GQ:PL	0/1:26,20:46:99:574,0,776
chr1	201341175	.	CAGAAG	C	4819.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0;DP=303;ExcessHet=3.0103;FS=9.211;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.42;QD=17.21;ReadPosRankSum=-1.777;SOR=0.388	GT:AD:DP:GQ:PL	0/1:150,130:280:99:4848,0,8106
chr1	201368463	.	G	GT	541.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.239;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.42;ReadPosRankSum=-0.685;SOR=1.058	GT:AD:DP:GQ:PL	0/1:16,17:33:99:570,0,525
chr1	201754410	.	CT	C	659.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DP=174;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.1;QD=7.58;ReadPosRankSum=0.21;SOR=0.467	GT:AD:DP:GQ:PL	0/1:48,39:129:99:688,0,1269
chr1	201772863	.	T	TG	1445.77	PASS	AC=2;AF=1;AN=2;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.44;QD=32.86;SOR=2.885	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1474,132,0
chr1	201837934	.	CGT	C	2584.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.496;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=4.859;MLEAC=2;MLEAF=1;MQ=60.71;MQRankSum=0;QD=28.1;ReadPosRankSum=1.07;SOR=1.655	GT:AD:DP:GQ:PL	1/1:5,87:101:99:2613,149,0
chr1	201840059	.	GTTATT	G	1130.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=32.93;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1159,78,0
chr1	201840504	.	CTT	C	410.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.452;QD=11.74;ReadPosRankSum=-0.54;SOR=0.914	GT:AD:DP:GQ:PL	0/1:17,18:61:99:439,0,473
chr1	201841734	.	A	AAAC	134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.95;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:29:163,0,29
chr1	201952440	.	C	CCTT	1983.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=25.59;SOR=5.33	GT:AD:DP:GQ:PL	1/1:0,44:44:99:2012,135,0
chr1	201966295	.	TG	T	256.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.4;ReadPosRankSum=0.253;SOR=1.981	GT:AD:DP:GQ:PL	0/1:3,9:12:70:285,0,70
chr1	201970986	.	C	CA	441.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.73;ReadPosRankSum=-0.602;SOR=0.082	GT:AD:DP:GQ:PL	0/1:15,15:30:99:470,0,472
chr1	201981005	.	C	CA	169.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-1.138;SOR=1.714	GT:AD:DP:GQ:PL	0/1:5,12:22:88:187,0,88
chr1	202107422	.	AACACAC	A,AACAC	1044.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.19;MQRankSum=0.32;QD=33.7;ReadPosRankSum=-1.085;SOR=1.426	GT:AD:DP:GQ:PL	1/2:1,20,10:40:99:1073,277,409,786,0,799
chr1	202126638	.	TAA	T	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.64;ReadPosRankSum=0;SOR=0.593	GT:AD:DP:GQ:PL	0/1:6,3:9:70:70,0,181
chr1	202194838	.	TTCC	T	286.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.73;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	202302035	.	C	CAAAAAAAAAAAAAAA	86.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.16;MQRankSum=0;QD=29.16;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,1:2:99:115,0,134
chr1	202464226	.	G	GT	22.58	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.2;QD=11.29;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	202572105	.	GCC	G	1761.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.81;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=6.932;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.17;QD=21.23;ReadPosRankSum=1.28;SOR=1.565	GT:AD:DP:GQ:PL	0/1:33,50:83:99:1790,0,1046
chr1	202573946	.	CTTT	C	119.03	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:147,12,0
chr1	202701185	.	AC	A	80.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.7;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.992;SOR=2.833	GT:AD:DP:GQ:PL	0/1:3,5:8:96:109,0,96
chr1	202715244	.	G	GA	2679.77	PASS	AC=2;AF=1;AN=2;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=27.07;SOR=1.146	GT:AD:DP:GQ:PL	1/1:0,99:104:99:2708,310,0
chr1	202715537	.	G	GA	241.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.46;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=2.05;SOR=0.963	GT:AD:DP:GQ:PL	0/1:11,16:33:99:270,0,209
chr1	202729334	.	TGG	T	151.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=64.19;QD=30.38;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:180,15,0
chr1	202731986	.	C	CCTCAA	5334.77	PASS	AC=2;AF=1;AN=2;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.56;QD=31.86;SOR=1.883	GT:AD:DP:GQ:PL	1/1:0,119:119:99:5363,365,0
chr1	202861463	.	TCTG	T	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.47;QD=32.18;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	202880547	.	A	AT	98.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.78;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:127,15,0
chr1	202934764	.	TC	T	456.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.87;SOR=2.712	GT:AD:DP:GQ:PL	1/1:0,17:17:51:485,51,0
chr1	202977665	.	G	GT	152.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=0.502;QD=11.75;ReadPosRankSum=-0.854;SOR=1.179	GT:AD:DP:GQ:PL	0/1:5,8:13:82:181,0,82
chr1	202990110	.	CTTT	C	1189.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.079;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.827;QD=22.88;ReadPosRankSum=-1.508;SOR=1.188	GT:AD:DP:GQ:PL	0/1:22,30:90:99:1218,0,1127
chr1	202990155	.	C	CT	152.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.88;ReadPosRankSum=-1.463;SOR=0.56	GT:AD:DP:GQ:PL	0/1:14,12:40:99:181,0,220
chr1	203021116	.	C	CCT	256.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.64;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.68;ReadPosRankSum=0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,7:10:99:285,0,105
chr1	203021180	.	C	CA	42.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:12:70,0,12
chr1	203023240	.	G	GGC	1597.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.48;ReadPosRankSum=-0.867;SOR=0.447	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1626,0,1535
chr1	203025096	.	CTTT	C	419.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.11;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=0.649;SOR=0.368	GT:AD:DP:GQ:PL	0/1:20,12:48:99:448,0,935
chr1	203037474	.	CA	C	446.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.32;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.07;QD=15.96;ReadPosRankSum=0.99;SOR=0.693	GT:AD:DP:GQ:PL	0/1:14,14:28:99:475,0,482
chr1	203134135	.	A	AT	651.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.22;SOR=0.888	GT:AD:DP:GQ:PL	0/1:31,28:59:99:680,0,723
chr1	203137784	.	A	ACT	2482.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.74;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=4.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.89;ReadPosRankSum=0.369;SOR=0.821	GT:AD:DP:GQ:PL	0/1:82,65:147:99:2511,0,3200
chr1	203274519	.	A	AGC	61.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	203275976	.	TCA	T	40.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
chr1	203807028	.	GT	G	979.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.206;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.5;ReadPosRankSum=0.462;SOR=0.538	GT:AD:DP:GQ:PL	0/1:23,33:56:99:1008,0,592
chr1	203821096	.	CAA	C	55.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.253;QD=11.19;ReadPosRankSum=0.524;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:14:84,0,14
chr1	203830512	.	ACTC	A	88.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=1.44;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,117
chr1	203834004	.	CAAAAAAAAAA	C	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.29;ReadPosRankSum=0.431;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,4:6:99:162,0,165
chr1	204109437	.	TCCA	T	57.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=0;SOR=0.086	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,3:7:86:0|1:204109437_TCCA_T:86,0,223
chr1	204109441	.	TC	T	57.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=0.189;SOR=0.132	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,3:6:86:0|1:204109437_TCCA_T:86,0,223
chr1	204110092	.	A	AG	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.15;ReadPosRankSum=-0.524;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,2:5:59:59,0,97
chr1	204159544	.	C	CA	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.86;ReadPosRankSum=0.282;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,2:9:63:0|1:204159542_G_C:63,0,303
chr1	204159611	.	CT	C	445.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.578;SOR=0.818	GT:AD:DP:GQ:PL	0/1:24,15:39:99:474,0,808
chr1	204234196	.	GGT	G	1123.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.501;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.56;ReadPosRankSum=1.09;SOR=0.986	GT:AD:DP:GQ:PL	0/1:35,29:69:99:1152,0,2078
chr1	204237113	.	TC	T	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.55;ReadPosRankSum=1.04;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,106
chr1	204409159	.	T	TC	130.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	204419217	.	C	CAGGCTG	237.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.42;ReadPosRankSum=-2.2;SOR=0.16	GT:AD:DP:GQ:PL	0/1:2,7:9:99:266,0,128
chr1	204423609	.	CAAA	C	45.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=0.253;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,3:6:60:73,0,60
chr1	204426001	.	A	AACAC	103.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.143;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.45;MQRankSum=-0.875;QD=8.65;ReadPosRankSum=-0.794;SOR=0.148	GT:AD:DP:GQ:PL	0/1:9,3:12:99:132,0,408
chr1	204426028	.	ACACACACC	A	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.37;MQRankSum=2.95;QD=3.22;ReadPosRankSum=0.307;SOR=0.193	GT:AD:DP:GQ:PL	0/1:12,5:17:83:83,0,403
chr1	204433511	.	T	TC	2275.77	PASS	AC=2;AF=1;AN=2;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2304,190,0
chr1	204434325	.	C	CCT	2663.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18;ReadPosRankSum=-2.092;SOR=0.672	GT:AD:DP:GQ:PGT:PID:PL	0/1:82,66:148:99:0|1:204434325_C_CCT:2692,0,3253
chr1	204494756	.	G	GT	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.97;ReadPosRankSum=0.591;SOR=0.711	GT:AD:DP:GQ:PL	0/1:29,13:48:99:153,0,554
chr1	204495595	.	G	GT	962.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-0.346;QD=20.93;ReadPosRankSum=-0.525;SOR=1.27	GT:AD:DP:GQ:PL	1/1:4,42:56:55:967,55,0
chr1	204505976	.	GA	G	361.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.28;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=4.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=0.323;SOR=2.176	GT:AD:DP:GQ:PL	0/1:20,19:39:99:390,0,452
chr1	204506174	.	CT	C	212.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=1.12;SOR=1.352	GT:AD:DP:GQ:PL	0/1:13,10:23:99:241,0,342
chr1	204970148	.	TC	T	158.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.55;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.82;ReadPosRankSum=0.545;SOR=0.34	GT:AD:DP:GQ:PL	0/1:11,7:18:99:187,0,310
chr1	205028883	.	CAG	C	501.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.88;ReadPosRankSum=-0.642;SOR=3.477	GT:AD:DP:GQ:PL	0/1:5,13:18:99:530,0,174
chr1	205034852	.	A	ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC	685.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=29.82;ReadPosRankSum=0.185;SOR=2.786	GT:AD:DP:GQ:PL	0/1:11,12:23:99:714,0,1824
chr1	205041487	.	A	ATGGG	769.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.55;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:54:798,54,0
chr1	205067972	.	CA	C	67.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.46;ReadPosRankSum=0.493;SOR=0.197	GT:AD:DP:GQ:PL	0/1:4,5:12:27:95,0,27
chr1	205129466	.	CT	C	364.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.5;MQ=60.52;MQRankSum=1.34;QD=9.6;ReadPosRankSum=-1.154;SOR=0.295	GT:AD:DP:GQ:PL	0/1:17,21:48:99:393,0,322
chr1	205131059	.	G	GAC	785.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=27.48;SOR=3.816	GT:AD:DP:GQ:PL	1/1:0,21:21:63:814,63,0
chr1	205239185	.	A	AT	14.91	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.48;ReadPosRankSum=-0.842;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,2:6:43:43,0,90
chr1	205417766	.	TGAG	T	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0.431;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:44:81,0,44
chr1	205687348	.	CTTTTTTCTTT	C	356.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=1.52;QD=7.43;ReadPosRankSum=-0.531;SOR=1.121	GT:AD:DP:GQ:PL	0/1:25,23:48:99:385,0,1244
chr1	205740426	.	C	CA	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=4.15;MLEAC=1;MLEAF=0.5;MQ=53.17;MQRankSum=-1.254;QD=4.21;ReadPosRankSum=0.566;SOR=0.074	GT:AD:DP:GQ:PL	0/1:8,5:13:83:83,0,123
chr1	205766159	.	CA	C	1956.77	PASS	AC=2;AF=1;AN=2;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=34.94;SOR=2.066	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1985,169,0
chr1	206331335	.	TAC	T	26.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.83;ReadPosRankSum=1.98;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,2:7:55:55,0,166
chr1	206566860	.	TA	T	245.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.075;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.5;MQ=53.05;MQRankSum=-5.63;QD=5.59;ReadPosRankSum=-1.729;SOR=1.536	GT:AD:DP:GQ:PL	0/1:26,18:48:99:274,0,573
chr1	206650852	.	C	CA	130.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	206711674	.	C	CG	569.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.23;QD=10.17;ReadPosRankSum=-2.158;SOR=0.569	GT:AD:DP:GQ:PL	0/1:33,23:56:99:598,0,969
chr1	206766819	.	AGAGC	A	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.62;MQRankSum=-0.366;QD=24.68;ReadPosRankSum=1.07;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:99:201,0,111
chr1	206766849	.	T	TGTGC	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.05;MQRankSum=0.253;QD=3.08;ReadPosRankSum=1.5;SOR=0.446	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,2:10:59:0|1:206766843_A_T:59,0,321
chr1	206770283	.	AC	A	133.28	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.04;ReadPosRankSum=-0.792;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,6:7:9:161,0,9
chr1	206772194	.	ACT	A	221.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.238;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=1.91;QD=12.32;ReadPosRankSum=0;SOR=1.136	GT:AD:DP:GQ:PL	0/1:11,7:18:99:250,0,427
chr1	206904644	.	C	CGT	443.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.12;QD=11.09;ReadPosRankSum=0.049;SOR=1.105	GT:AD:DP:GQ:PL	0/1:23,17:43:99:472,0,714
chr1	207237233	.	G	GGGGTGTGTGTGTGTGT,GGGGTGTGTGTGTGTGTGT	8829.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.83;ClippingRankSum=0;DP=274;ExcessHet=3.0103;FS=25.279;MLEAC=1,1;MLEAF=0.5,0.5;MQ=65.03;MQRankSum=-0.632;QD=31.93;ReadPosRankSum=2.14;SOR=7.13	GT:AD:DP:GQ:PL	1/2:3,32,54:110:99:8858,2005,1334,1465,0,822
chr1	207241440	.	A	AGTGTGTGTGT	228.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.646;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.25;ReadPosRankSum=0;SOR=2.494	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,9:15:99:0|1:207241440_A_AGTGTGTGTGT:257,0,147
chr1	207241455	.	G	GTGTGTGTGTA	228.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.34;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.17;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,6:18:99:1|0:207241440_A_AGTGTGTGTGT:257,0,306
chr1	207511004	.	T	TA	37.28	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:10:65,0,10
chr1	207512577	.	T	TTAA	3278.77	PASS	AC=2;AF=1;AN=2;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=6.244	GT:AD:DP:GQ:PL	1/1:0,69:69:99:3307,222,0
chr1	207850652	.	CAAAAA	C	1458.77	PASS	AC=2;AF=1;AN=2;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.02;QD=31.87;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,14:48:99:1032,125,0
chr1	207881485	.	TA	T	12215.8	PASS	AC=2;AF=1;AN=2;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.45;QD=31.78;SOR=2.197	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,266:266:99:1|1:207881485_TA_T:12244,822,0
chr1	207959122	.	CTTT	C,CTT	840.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=14.75;ReadPosRankSum=-1.54;SOR=2.463	GT:AD:DP:GQ:PL	1/2:5,27,25:65:99:869,425,1146,485,0,1083
chr1	207959136	.	T	TAA	1117.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.2;ReadPosRankSum=-1.701;SOR=0.664	GT:AD:DP:GQ:PL	0/1:34,31:67:99:1146,0,1361
chr1	208063100	.	G	GA,GAA	1597.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.649;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=3.268;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.11;MQRankSum=0.387;QD=20.48;ReadPosRankSum=0.659;SOR=0.26	GT:AD:DP:GQ:PL	1/2:9,50,19:83:99:1626,319,283,830,0,955
chr1	208204794	.	CTGTT	C	613.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=4.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.61;ReadPosRankSum=1.16;SOR=2.531	GT:AD:DP:GQ:PL	0/1:10,16:26:99:642,0,531
chr1	208276399	.	C	CCTCT	2496.77	PASS	AC=2;AF=1;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.51;SOR=5.709	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2525,174,0
chr1	209602886	.	C	CA	131.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.07;ReadPosRankSum=1.03;SOR=0.33	GT:AD:DP:GQ:PL	0/1:16,10:26:99:160,0,272
chr1	209605636	.	TAGCAGCAGCAGC	T	1328.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.66;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.915;QD=18.72;ReadPosRankSum=0.112;SOR=1.077	GT:AD:DP:GQ:PL	0/1:34,37:77:99:1357,0,1652
chr1	209773633	.	A	ATT	60.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.21;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:20:89,0,20
chr1	209781417	.	TAC	T	115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.53;QD=4.63;ReadPosRankSum=-1.404;SOR=0.223	GT:AD:DP:GQ:PL	0/1:19,6:28:99:144,0,546
chr1	209792015	.	A	AC	2574.77	PASS	AC=2;AF=1;AN=2;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=28.12;SOR=1.163	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2603,211,0
chr1	209849399	.	AG	A	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.55;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=-0.091;SOR=0.078	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,4:11:99:0|1:209849399_AG_A:129,0,250
chr1	209969979	.	A	AACACACAC	417.77	PASS	AC=1;AF=0.5;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.91;QD=33.37;SOR=4.804	GT:AD:DP:GQ:PL	0/1:0,5:10:11:315,0,11
chr1	210001746	.	A	AT	30.19	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=10.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:57,9,0
chr1	210015568	.	GCT	G	1299.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=6.869	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1328,90,0
chr1	210411266	.	GT	G	540.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=2.732;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.727;QD=9.49;ReadPosRankSum=-0.41;SOR=1.356	GT:AD:DP:GQ:PL	0/1:27,30:82:99:569,0,553
chr1	210414879	.	CT	C	195.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.23;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=5.347;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.2;QD=3.16;ReadPosRankSum=-0.858;SOR=1.5	GT:AD:DP:GQ:PL	0/1:44,18:76:99:224,0,985
chr1	210970823	.	T	TG	2389.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.453;ClippingRankSum=0;DP=170;ExcessHet=3.0103;FS=7.986;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.09;QD=14.14;ReadPosRankSum=-0.08;SOR=0.31	GT:AD:DP:GQ:PL	0/1:91,78:169:99:2418,0,2490
chr1	211280724	.	TA	T	597.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.396;QD=19.93;ReadPosRankSum=-0.084;SOR=0.941	GT:AD:DP:GQ:PL	1/1:3,27:37:35:594,35,0
chr1	211447435	.	CT	C	238.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.71;SOR=1.27	GT:AD:DP:GQ:PL	1/1:0,11:11:33:267,33,0
chr1	211452529	.	TA	T	140.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.15;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.82;ReadPosRankSum=-0.965;SOR=2.03	GT:AD:DP:GQ:PL	0/1:8,10:20:99:169,0,133
chr1	211545442	.	CT	C	525.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.927;SOR=0.343	GT:AD:DP:GQ:PL	0/1:16,29:56:99:554,0,220
chr1	211832061	.	CAAA	C	72.77	PASS	AC=1;AF=0.5;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=29.3;SOR=1.609	GT:AD:DP:GQ:PL	0/1:0,2:4:41:64,0,41
chr1	211832096	.	GA	G	50.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=16.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:77,9,0
chr1	212142054	.	GA	G	277.77	PASS	AC=2;AF=1;AN=2;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.93;QD=27.78;SOR=3.126	GT:AD:DP:GQ:PL	1/1:0,10:15:42:271,42,0
chr1	212184506	.	CCT	C	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.674;SOR=2.209	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,89
chr1	212209367	.	T	TC	298.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.86;ReadPosRankSum=-0.893;SOR=0.112	GT:AD:DP:GQ:PL	0/1:25,13:38:99:327,0,744
chr1	212217971	.	C	CTT	1870.77	PASS	AC=2;AF=1;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.65;SOR=3.664	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1899,129,0
chr1	212241714	.	TA	T	701.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.135;ClippingRankSum=0;DP=115;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=1.32;SOR=1.278	GT:AD:DP:GQ:PL	0/1:32,41:92:99:730,0,609
chr1	212251367	.	GT	G	892.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.77;MQRankSum=0.463;QD=21.26;ReadPosRankSum=0.739;SOR=2.985	GT:AD:DP:GQ:PL	1/1:2,40:42:74:921,74,0
chr1	212274503	.	C	CT	157.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.252;SOR=1.371	GT:AD:DP:GQ:PL	0/1:6,11:17:70:186,0,70
chr1	212538771	.	CT	C	90.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=-0.744;QD=4.32;ReadPosRankSum=1.2;SOR=1.214	GT:AD:DP:GQ:PL	0/1:13,8:33:99:119,0,246
chr1	212616080	.	C	CATTTT	1114.77	PASS	AC=2;AF=1;AN=2;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.77;QD=30.7;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,28:28:83:1143,83,0
chr1	212617907	.	GTGTA	G	189.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=0;QD=9.49;ReadPosRankSum=1.41;SOR=0.892	GT:AD:DP:GQ:PL	0/1:9,11:20:99:218,0,179
chr1	212617909	.	GTA	G	150.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=0;QD=7.54;ReadPosRankSum=-0.496;SOR=0.527	GT:AD:DP:GQ:PL	0/1:11,9:20:99:179,0,218
chr1	212791288	.	CGT	C	117.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
chr1	212900434	.	C	CG	4365.77	PASS	AC=2;AF=1;AN=2;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=2.259	GT:AD:DP:GQ:PL	1/1:0,108:108:99:4394,328,0
chr1	212912108	.	ATT	A	233.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=29.22;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:262,24,0
chr1	212969842	.	C	CT	408.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.34;ReadPosRankSum=-1.349;SOR=0.804	GT:AD:DP:GQ:PL	0/1:6,19:30:55:435,0,55
chr1	213009178	.	CA	C	60.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.27;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=-1.104;QD=2.1;ReadPosRankSum=0.784;SOR=1.981	GT:AD:DP:GQ:PL	0/1:19,10:33:89:89,0,382
chr1	213036924	.	C	CAAAA	349.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:378,27,0
chr1	213062017	.	T	TTTG	1271.77	PASS	AC=2;AF=1;AN=2;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=30.93;SOR=5.353	GT:AD:DP:GQ:PL	1/1:0,29:29:86:1300,86,0
chr1	213180441	.	GAA	G,GAAA	124.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=15.6;SOR=0.693	GT:AD:DP:GQ:PL	1/2:0,3,5:8:76:153,98,175,76,0,78
chr1	213405414	.	GGCAACTGAGGAT	G	2158.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.84;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60.76;MQRankSum=2.67;QD=20.76;ReadPosRankSum=1.17;SOR=0.827	GT:AD:DP:GQ:PL	0/1:47,57:104:99:2187,0,5038
chr1	214492091	.	G	GT	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.55;ReadPosRankSum=0.463;SOR=0.473	GT:AD:DP:GQ:PL	0/1:9,5:16:64:64,0,178
chr1	214497794	.	CTTGT	C	546.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.83;QD=29.81;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,13:13:39:575,39,0
chr1	214538109	.	AGTGTGT	A,AGT	1020.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.38;QD=29.55;SOR=5.211	GT:AD:DP:GQ:PL	1/2:0,7,18:27:99:1049,533,457,227,0,149
chr1	214638383	.	CCCCCCCCCCCA	C	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	214806072	.	GAAGT	G	85.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,191
chr1	214821699	.	TA	T	372.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.905;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=1.45;QD=14.91;ReadPosRankSum=-1.025;SOR=1.863	GT:AD:DP:GQ:PL	0/1:12,13:25:99:401,0,356
chr1	214830165	.	TA	T	112.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.81;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:141,18,0
chr1	215345263	.	GTCTCTC	G	3097.77	PASS	AC=2;AF=1;AN=2;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;QD=30.99;SOR=5.004	GT:AD:DP:GQ:PL	1/1:0,70:77:99:3120,226,0
chr1	215791734	.	A	AT	13.95	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.49;ReadPosRankSum=0;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:36:42,0,36
chr1	215824195	.	GA	G	65.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=12.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.46;ReadPosRankSum=0.802;SOR=0.016	GT:AD:DP:GQ:PL	0/1:13,6:22:94:94,0,222
chr1	215844714	.	T	TA	145.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.83;ReadPosRankSum=-1.592;SOR=0.473	GT:AD:DP:GQ:PL	0/1:17,8:30:99:174,0,310
chr1	215853748	.	GT	G	1737.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.24;ReadPosRankSum=0.187;SOR=0.61	GT:AD:DP:GQ:PL	0/1:18,89:114:99:1766,0,140
chr1	215901924	.	G	GAC,GACACACAC	200.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=29.53;SOR=1.022	GT:AD:DP:GQ:PL	1/2:0,3,2:5:82:229,135,124,82,0,87
chr1	215916683	.	AAG	A	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.275;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.38;ReadPosRankSum=-0.747;SOR=0.368	GT:AD:DP:GQ:PL	0/1:18,5:23:83:83,0,580
chr1	215955732	.	T	TAA	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.59;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:36:78,0,36
chr1	216172128	.	C	CA	302.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.92;ReadPosRankSum=-0.964;SOR=2.093	GT:AD:DP:GQ:PL	0/1:5,11:20:99:331,0,199
chr1	216246675	.	AG	A	2645.77	PASS	AC=2;AF=1;AN=2;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=34.36;SOR=2.524	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2674,232,0
chr1	216595679	.	GT	G	255.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.69;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.1;ReadPosRankSum=-1.135;SOR=1.678	GT:AD:DP:GQ:PL	0/1:25,11:36:99:284,0,727
chr1	218610662	.	CT	C	154.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.988;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.21;QD=2.38;ReadPosRankSum=-0.599;SOR=0.953	GT:AD:DP:GQ:PL	0/1:49,16:84:99:183,0,1011
chr1	219366400	.	T	TG	313.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=0;QD=9.51;ReadPosRankSum=-0.072;SOR=0.859	GT:AD:DP:GQ:PL	0/1:18,15:33:99:342,0,423
chr1	219383848	.	A	ACTTTTT	2456.77	PASS	AC=2;AF=1;AN=2;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.12;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2485,168,0
chr1	220101020	.	C	CA	74.77	PASS	AC=1;AF=0.5;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=24.92;SOR=3.611	GT:AD:DP:GQ:PL	0/1:0,3:5:4:59,0,4
chr1	220151808	.	C	CAA	731.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.39;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=6.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.02;ReadPosRankSum=0.588;SOR=2.211	GT:AD:DP:GQ:PL	0/1:24,19:43:99:760,0,1018
chr1	220153332	.	T	TAA	747.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=3.107;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.1;QD=17.8;ReadPosRankSum=-0.592;SOR=2.303	GT:AD:DP:GQ:PL	0/1:22,20:42:99:776,0,782
chr1	220154246	.	AT	A	398.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.14;QD=9.73;ReadPosRankSum=0.192;SOR=0.586	GT:AD:DP:GQ:PL	0/1:18,23:48:99:427,0,355
chr1	220154659	.	TAAA	T	314.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.67;ReadPosRankSum=0.567;SOR=1.765	GT:AD:DP:GQ:PL	0/1:5,11:16:99:343,0,168
chr1	220178717	.	T	TA	661.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=1.53;QD=11.61;ReadPosRankSum=-0.4;SOR=0.437	GT:AD:DP:GQ:PL	0/1:30,27:57:99:690,0,760
chr1	220184150	.	CA	C	550.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=0.704;QD=13.11;ReadPosRankSum=0.86;SOR=0.934	GT:AD:DP:GQ:PL	0/1:10,32:52:99:579,0,126
chr1	220191932	.	G	GA	141.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=0.235;SOR=1.493	GT:AD:DP:GQ:PL	0/1:6,7:18:79:170,0,79
chr1	220192192	.	TA	T	67.77	PASS	AC=1;AF=0.5;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=22.59;SOR=3.611	GT:AD:DP:GQ:PL	0/1:0,3:5:6:51,0,6
chr1	220198770	.	GA	G	28.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.6;ReadPosRankSum=0.144;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:57:57,0,81
chr1	220205583	.	ATT	A	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=-0.674;QD=6.29;ReadPosRankSum=-0.189;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:41:66,0,41
chr1	220231180	.	CT	C	566.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=4.643;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.13;QD=14.53;ReadPosRankSum=1.86;SOR=0.646	GT:AD:DP:GQ:PL	0/1:21,18:39:99:595,0,715
chr1	220603310	.	TGTGA	T	297.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.55;MQRankSum=0;QD=17.52;ReadPosRankSum=-0.905;SOR=0.793	GT:AD:DP:GQ:PL	0/1:4,13:18:83:326,0,83
chr1	220771740	.	T	TTA	66.56	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.64;ReadPosRankSum=1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:8:94,0,8
chr1	220789355	.	AT	A	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=2.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.57;ReadPosRankSum=0.145;SOR=0.2	GT:AD:DP:GQ:PL	0/1:19,7:26:95:95,0,448
chr1	220808666	.	CT	C	236.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.9;QD=6.58;ReadPosRankSum=0.23;SOR=1.075	GT:AD:DP:GQ:PL	0/1:19,17:45:99:265,0,361
chr1	222711765	.	CAG	C	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.16;ReadPosRankSum=-0.524;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:54:54,0,86
chr1	222734662	.	TC	T	1943.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.22;QD=19.83;ReadPosRankSum=-0.007;SOR=0.671	GT:AD:DP:GQ:PL	0/1:41,57:98:99:1972,0,1362
chr1	223152782	.	AAAATT	A	347.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.5;MQ=60.71;MQRankSum=1.77;QD=17.39;ReadPosRankSum=0.832;SOR=0.072	GT:AD:DP:GQ:PL	0/1:10,10:20:99:376,0,390
chr1	223156280	.	C	CTT	239.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.82;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=-0.456;SOR=0.892	GT:AD:DP:GQ:PL	0/1:9,9:20:99:268,0,217
chr1	223722646	.	T	TA	386.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.77;ReadPosRankSum=-0.635;SOR=1.017	GT:AD:DP:GQ:PL	0/1:42,25:77:99:415,0,796
chr1	224102762	.	C	CT	51.18	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.44;QD=17.06;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
chr1	224302154	.	T	TGAG	1087.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=32.37;SOR=3.528	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1116,75,0
chr1	224318151	.	T	TTTG	4439.77	PASS	AC=2;AF=1;AN=2;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=31.12;SOR=2.977	GT:AD:DP:GQ:PL	1/1:0,99:99:99:4468,306,0
chr1	224418834	.	C	CA	424.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=5.271;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=1.51;QD=9.88;ReadPosRankSum=-0.167;SOR=0.135	GT:AD:DP:GQ:PL	0/1:19,24:60:99:453,0,341
chr1	224468986	.	C	CGT	87.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=0.464;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,4:8:48:97,0,48
chr1	224500860	.	CAA	C	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.35;ReadPosRankSum=1.04;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,106
chr1	224500881	.	A	AG	167.77	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=34.22;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,3:5:13:131,13,0
chr1	224505570	.	T	TAA	7865.77	PASS	AC=2;AF=1;AN=2;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=31.68;SOR=0.726	GT:AD:DP:GQ:PL	1/1:0,185:185:99:7894,562,0
chr1	224505820	.	C	CT	89.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=22.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:117,12,0
chr1	224599017	.	GCT	G	283.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.74;ReadPosRankSum=0.77;SOR=0.693	GT:AD:DP:GQ:PL	0/1:8,8:16:99:312,0,317
chr1	224621906	.	C	CGGA	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=-1.242;SOR=0.859	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,247
chr1	224926997	.	CTTT	C,CTT	660.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.457;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=3.624;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.89;MQRankSum=2.54;QD=22.79;ReadPosRankSum=0.378;SOR=1.061	GT:AD:DP:GQ:PL	1/2:7,12,10:50:94:689,94,327,385,0,393
chr1	225267374	.	C	CTT	172.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.69;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:201,21,0
chr1	225512402	.	GT	G	1006.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.32;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.17;QD=9.24;ReadPosRankSum=0.536;SOR=0.879	GT:AD:DP:GQ:PL	0/1:62,47:109:99:1035,0,1579
chr1	225539790	.	ATTAGAAATC	A	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=0.842;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,344
chr1	225545301	.	A	AATATGTGATAT	293.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.82;ReadPosRankSum=-1.465;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,6:7:99:322,0,107
chr1	225685621	.	TAAG	T	826.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.01;SOR=4.514	GT:AD:DP:GQ:PL	1/1:0,19:19:57:855,57,0
chr1	225707033	.	ATCCAGGCGTTCCTGCCGC	A	4251.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=665;ExcessHet=3.0103;FS=5.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=1.12;SOR=0.571	GT:AD:DP:GQ:PL	0/1:171,129:300:99:4280,0,8435
chr1	225974547	.	CT	C	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.701;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.93;MQRankSum=1.19;QD=3.55;ReadPosRankSum=-1.679;SOR=0.693	GT:AD:DP:GQ:PL	0/1:9,5:18:78:78,0,189
chr1	226019247	.	CA	C	34.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.253;QD=6.82;ReadPosRankSum=-0.524;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,4:5:11:62,0,11
chr1	226044489	.	G	GC	3967.77	PASS	AC=2;AF=1;AN=2;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=32.52;SOR=1.355	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3996,370,0
chr1	226048744	.	CA	C	1018.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.05;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.33;SOR=0.746	GT:AD:DP:GQ:PL	0/1:41,34:75:99:1047,0,1297
chr1	226075410	.	GC	G	176.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.49;MQRankSum=0;QD=11.78;ReadPosRankSum=0.564;SOR=0.495	GT:AD:DP:GQ:PL	0/1:7,8:15:99:205,0,173
chr1	226125543	.	G	GA	1936.77	PASS	AC=2;AF=1;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.36;QD=33.23;SOR=2.437	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1965,159,0
chr1	226125738	.	AT	A	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,69
chr1	226180813	.	TTTC	T	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=0.842;SOR=1.27	GT:AD:DP:GQ:PL	0/1:5,3:8:99:102,0,103
chr1	226253123	.	T	TTTGCGTGTAATCGGATAGTTCATTAAAATGGTAAGAGAGAGGCTTTTCAGACGGCC	205.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.9;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=26.646;MLEAC=1;MLEAF=0.5;MQ=53.93;MQRankSum=-3.268;QD=17.15;ReadPosRankSum=-2.625;SOR=3.892	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,6:12:99:0|1:226253123_T_TTTGCGTGTAATCGGATAGTTCATTAAAATGGTAAGAGAGAGGCTTTTCAGACGGCC:234,0,234
chr1	226485327	.	A	AT	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.72;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=0.93;QD=12.57;ReadPosRankSum=1.76;SOR=1.051	GT:AD:DP:GQ:PL	0/1:10,14:24:99:330,0,188
chr1	226553494	.	C	CA	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.54;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,4:4:12:1|1:226553485_A_C:180,12,0
chr1	226836163	.	T	TG	134.9	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.98;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr1	226923146	.	GT	G	402.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.1;QD=13.89;ReadPosRankSum=-0.852;SOR=0.627	GT:AD:DP:GQ:PL	0/1:15,14:29:99:431,0,473
chr1	226924875	.	ACTGCCGCTG	A	627.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.4;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=3.251;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=0.972;QD=20.25;ReadPosRankSum=-0.525;SOR=0.467	GT:AD:DP:GQ:PL	0/1:14,17:31:99:656,0,1397
chr1	227068246	.	A	AGACAGCGATCACTCAGCCTCTG	3167.77	PASS	AC=2;AF=1;AN=2;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.38;QD=29.66;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,33:33:99:3196,245,0
chr1	227171584	.	GT	G	1167.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.35;SOR=1.085	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1196,102,0
chr1	227171736	.	G	GT	260.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=1.16;SOR=0.46	GT:AD:DP:GQ:PGT:PID:PL	0/1:16,12:28:99:0|1:227171736_G_GT:289,0,399
chr1	227198434	.	AGAG	A	352.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.36;QD=31.6;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:27:381,27,0
chr1	227218069	.	C	CAT	1407.77	PASS	AC=2;AF=1;AN=2;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=2.765	GT:AD:DP:GQ:PL	1/1:0,32:32:99:1436,99,0
chr1	227218085	.	CA	C	461.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.73;MQRankSum=1.38;QD=11.26;ReadPosRankSum=-1.206;SOR=0.775	GT:AD:DP:GQ:PL	0/1:15,26:41:99:490,0,244
chr1	227222515	.	G	GACAA	6368.77	PASS	AC=2;AF=1;AN=2;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=29.47;SOR=2.567	GT:AD:DP:GQ:PL	1/1:0,141:141:99:6397,437,0
chr1	227288563	.	TC	T	247.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.83;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.65;ReadPosRankSum=0.395;SOR=1.022	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,7:12:99:0|1:227288563_TC_T:276,0,189
chr1	227401072	.	GC	G	137.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.68;ReadPosRankSum=-1.068;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:54:166,0,54
chr1	227770188	.	AT	A	49.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.61;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.23;ReadPosRankSum=2.84;SOR=0.818	GT:AD:DP:GQ:PL	0/1:3,5:12:60:60,0,81
chr1	227834233	.	TC	T	4800.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=2.81;ClippingRankSum=0;DP=228;ExcessHet=3.0103;FS=7.714;MLEAC=2;MLEAF=1;MQ=60.57;MQRankSum=0.386;QD=23.77;ReadPosRankSum=2.62;SOR=1.939	GT:AD:DP:GQ:PL	1/1:13,189:202:99:4829,264,0
chr1	227946501	.	G	GCC	278.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:307,21,0
chr1	228402951	.	TG	T	324.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=32.48;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,10:10:30:353,30,0
chr1	228405118	.	G	GA	270.85	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=19.35;ReadPosRankSum=0;SOR=2.448	GT:AD:DP:GQ:PL	1/1:1,13:14:17:299,17,0
chr1	228444808	.	A	AG	502.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.67;QD=33.52;SOR=3.126	GT:AD:DP:GQ:PL	1/1:0,15:15:45:531,45,0
chr1	228461408	.	A	AG	1239.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.57;QD=33.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1268,114,0
chr1	228465674	.	C	CAAG	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.601;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.967;QD=7.42;ReadPosRankSum=-1.383;SOR=1.022	GT:AD:DP:GQ:PL	0/1:6,3:9:95:95,0,296
chr1	228526742	.	C	CCA	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.608;SOR=1.402	GT:AD:DP:GQ:PL	0/1:3,4:7:63:95,0,63
chr1	228646356	.	CGTGTGTGT	C	85.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.328;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,299
chr1	229438530	.	C	CT	77.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.09;ReadPosRankSum=-0.751;SOR=0.693	GT:AD:DP:GQ:PL	0/1:12,7:24:99:106,0,246
chr1	229477725	.	GA	G	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.35;ReadPosRankSum=-2.45;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:71:71,0,78
chr1	229602743	.	T	TTTTA	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	229663064	.	GAGGAA	G	1751.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=29.77;SOR=1.292	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1780,121,0
chr1	229667694	.	GT	G	13.11	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.28;ReadPosRankSum=1.15;SOR=0.916	GT:AD:DP:GQ:PL	1/1:1,3:4:1:38,1,0
chr1	230459433	.	GC	G	598.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.25;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=3.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.298;SOR=1.319	GT:AD:DP:GQ:PL	0/1:35,26:61:99:627,0,879
chr1	230503576	.	GCATTCTCGCGTCCAATTT	G	28.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.62;ReadPosRankSum=0;SOR=0.818	GT:AD:DP:GQ:PL	0/1:9,2:11:57:57,0,1325
chr1	230804199	.	CG	C	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=0;SOR=2.209	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr1	230819155	.	TA	T	23.2	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=7.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:50,9,0
chr1	230819479	.	G	GT	1009.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.379;QD=21.95;ReadPosRankSum=0.073;SOR=1.24	GT:AD:DP:GQ:PL	1/1:5,41:55:49:995,49,0
chr1	230820763	.	C	CACATT	6745.77	PASS	AC=2;AF=1;AN=2;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.19;SOR=3.489	GT:AD:DP:GQ:PL	1/1:0,144:144:99:6774,465,0
chr1	230895523	.	TA	T	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=0;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,69
chr1	230910481	.	CTTTCTT	C	209.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.5;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.5;MQ=61.03;MQRankSum=2.03;QD=5.83;ReadPosRankSum=-0.099;SOR=1.385	GT:AD:DP:GQ:PL	0/1:27,9:41:99:238,0,1014
chr1	230915827	.	CGTGTGTGTGT	C	299.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.39;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.58;MQRankSum=1.71;QD=16.65;ReadPosRankSum=-0.065;SOR=0.446	GT:AD:DP:GQ:PL	0/1:9,9:24:99:328,0,821
chr1	231064578	.	T	TCTC	721.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.05;QD=18.99;ReadPosRankSum=0.365;SOR=0.25	GT:AD:DP:GQ:PL	0/1:19,19:38:99:750,0,687
chr1	231092211	.	T	TG	483.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.604;SOR=0.511	GT:AD:DP:GQ:PL	0/1:25,18:43:99:512,0,752
chr1	231093785	.	CT	C	56.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.16;ReadPosRankSum=0.534;SOR=1.609	GT:AD:DP:GQ:PL	0/1:6,5:11:85:85,0,113
chr1	231094050	.	GA	G	477.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.8;QD=6.83;ReadPosRankSum=-0.72;SOR=0.527	GT:AD:DP:GQ:PL	0/1:40,30:92:99:506,0,809
chr1	231396116	.	T	TTA	168.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.25;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:29:197,0,29
chr1	231475793	.	T	TAA	27.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.94;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:51:56,0,51
chr1	232564096	.	CT	C	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.86;ReadPosRankSum=-1.767;SOR=0.368	GT:AD:DP:GQ:PL	0/1:9,7:23:99:122,0,138
chr1	232606993	.	GTGTC	G	307.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.06;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=0.725;SOR=1.179	GT:AD:DP:GQ:PL	0/1:14,9:23:99:336,0,561
chr1	232629170	.	TA	T	606.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=7.027;MLEAC=1;MLEAF=0.5;MQ=60.52;MQRankSum=1.61;QD=10.11;ReadPosRankSum=-1.047;SOR=2.797	GT:AD:DP:GQ:PL	0/1:27,33:60:99:635,0,525
chr1	233091276	.	CTT	C	303.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.35;QD=5.73;ReadPosRankSum=0.27;SOR=1.102	GT:AD:DP:GQ:PL	0/1:37,16:79:99:332,0,1151
chr1	233137225	.	CATAA	C	646.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.74;SOR=3.126	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr1	233295992	.	CT	C	328.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.16;QD=3.74;ReadPosRankSum=-1.308;SOR=0.967	GT:AD:DP:GQ:PL	0/1:61,27:108:99:357,0,1419
chr1	233353955	.	C	CAA	32.56	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=16.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:59,6,0
chr1	233354167	.	T	TG	53.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.99;QD=26.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	233398918	.	AG	A	942.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.25;ReadPosRankSum=0.031;SOR=0.952	GT:AD:DP:GQ:PL	0/1:26,32:58:99:971,0,780
chr1	233398931	.	G	GC	2270.77	PASS	AC=2;AF=1;AN=2;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=3.442	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,50:50:99:1|1:233398927_C_G:2299,157,0
chr1	233399003	.	T	TAAATTAGGCAAGATTTC	285.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.26;ReadPosRankSum=1.07;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,6:7:16:314,0,16
chr1	234041735	.	ATC	A	87.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.94;ReadPosRankSum=-0.319;SOR=0.916	GT:AD:DP:GQ:PL	0/1:1,3:4:31:116,0,31
chr1	234444761	.	TA	T	932.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0.675;QD=16.36;ReadPosRankSum=0.01;SOR=3.816	GT:AD:DP:GQ:PL	0/1:8,49:67:43:961,0,43
chr1	234509858	.	GT	G	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.78;ReadPosRankSum=1.33;SOR=0.569	GT:AD:DP:GQ:PL	0/1:3,7:10:40:96,0,40
chr1	234519319	.	G	GACAC,GACACACACACAC	321.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.67;QD=28.55;SOR=4.174	GT:AD:DP:GQ:PL	1/2:0,4,3:7:99:350,129,111,174,0,201
chr1	234519452	.	C	CT	1256.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=3.177;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.17;ReadPosRankSum=0.751;SOR=2.133	GT:AD:DP:GQ:PL	1/1:3,49:57:96:1285,96,0
chr1	234528087	.	C	CA	293.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.76;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.55;MQRankSum=-0.144;QD=7.73;ReadPosRankSum=-0.517;SOR=0.512	GT:AD:DP:GQ:PL	0/1:22,16:40:99:322,0,398
chr1	234565510	.	TGGG	T,TG	556.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=29.57;SOR=5.549	GT:AD:DP:GQ:PL	1/2:0,9,6:15:99:585,167,143,251,0,206
chr1	234582379	.	A	AAATTATATAATTTCTTAATATAT	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:9:135,9,0
chr1	234601456	.	TA	T	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.42;ReadPosRankSum=-0.052;SOR=0.182	GT:AD:DP:GQ:PL	0/1:20,8:41:96:96,0,378
chr1	234607055	.	TG	T	412.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.74;ReadPosRankSum=-0.6;SOR=0.328	GT:AD:DP:GQ:PL	0/1:15,13:28:99:441,0,520
chr1	235301496	.	CA	C	126.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.819;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=5.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=0.674;SOR=2.419	GT:AD:DP:GQ:PL	0/1:7,7:20:99:155,0,110
chr1	235316185	.	CT	C	63.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.18;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60.98;MQRankSum=0.524;QD=6.38;ReadPosRankSum=-1.242;SOR=0.105	GT:AD:DP:GQ:PL	0/1:4,6:10:52:92,0,52
chr1	235383506	.	TAAAC	T	370.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.414;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.81;ReadPosRankSum=0.979;SOR=1.981	GT:AD:DP:GQ:PL	0/1:7,10:17:99:399,0,356
chr1	235543262	.	C	CA	157.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-0.711;QD=7.51;ReadPosRankSum=-1.013;SOR=1.255	GT:AD:DP:GQ:PL	0/1:11,10:29:99:186,0,173
chr1	235605323	.	A	AT	62.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.46;MQRankSum=-0.589;QD=4.83;ReadPosRankSum=-0.891;SOR=0.551	GT:AD:DP:GQ:PL	0/1:6,7:18:91:91,0,122
chr1	235621851	.	C	CA	57.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.72;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.61;ReadPosRankSum=-0.247;SOR=0.793	GT:AD:DP:GQ:PL	0/1:10,6:21:86:86,0,213
chr1	235826382	.	TA	T	307.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.517;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=9.541;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=1.61;QD=6.69;ReadPosRankSum=-0.399;SOR=2.146	GT:AD:DP:GQ:PL	0/1:26,20:58:99:336,0,566
chr1	235856538	.	G	GC	464.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59;QD=33.2;SOR=2.985	GT:AD:DP:GQ:PL	1/1:0,14:14:42:493,42,0
chr1	235918688	.	C	CAAAAG	259.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=36.49;ReadPosRankSum=-0.876;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,5:7:91:288,0,91
chr1	236395979	.	C	CT	176.82	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=17.68;ReadPosRankSum=-1.036;SOR=1.802	GT:AD:DP:GQ:PL	1/1:1,9:10:19:205,19,0
chr1	236433135	.	AT	A	1112.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.43;QD=30.99;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1141,90,0
chr1	236444879	.	G	GGCCCGGCCCT	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.67;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	236700673	.	GAGC	G	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=1.31;SOR=0.963	GT:AD:DP:GQ:PL	0/1:11,6:17:99:219,0,486
chr1	236702497	.	AGTTT	A	418.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=8.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.264;SOR=0.033	GT:AD:DP:GQ:PL	0/1:19,12:31:99:447,0,762
chr1	236702557	.	GTA	G	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.17;MQRankSum=0.728;QD=30.18;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,8:10:60:0|1:236702552_G_A:330,0,60
chr1	236702559	.	A	AGGG	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.728;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.17;MQRankSum=0.728;QD=30.18;ReadPosRankSum=0.493;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,8:10:60:0|1:236702552_G_A:330,0,60
chr1	236703832	.	CG	C	366.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.28;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.05;ReadPosRankSum=-0.607;SOR=1.41	GT:AD:DP:GQ:PL	0/1:34,18:52:99:395,0,838
chr1	236704888	.	A	AACAGGT	250.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.8;ReadPosRankSum=0.525;SOR=0.859	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,6:11:99:0|1:236704888_A_AACAGGT:279,0,189
chr1	236704891	.	TAAA	T	250.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.9;ReadPosRankSum=0.312;SOR=1.022	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,7:12:99:0|1:236704888_A_AACAGGT:279,0,189
chr1	236704897	.	ATT	A	250.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.9;SOR=1.022	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,7:12:99:0|1:236704888_A_AACAGGT:279,0,189
chr1	236708022	.	GT	G	798.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.66;ReadPosRankSum=1.28;SOR=0.737	GT:AD:DP:GQ:PGT:PID:PL	0/1:29,22:51:99:0|1:236708022_GT_G:827,0,1541
chr1	236708357	.	C	CCCTT	286.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	236711174	.	T	TCA	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=1.04;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,122
chr1	236714292	.	TA	T,TAA	327.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-2.536;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.15;MQRankSum=0.604;QD=6.83;ReadPosRankSum=-1.401;SOR=0.892	GT:AD:DP:GQ:PL	1/2:14,20,14:58:80:356,80,435,166,0,511
chr1	236732185	.	T	TAA	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.69;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:51:59,0,51
chr1	236737874	.	CT	C	57.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.97;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.22;ReadPosRankSum=0.405;SOR=0.148	GT:AD:DP:GQ:PL	0/1:19,7:26:86:86,0,403
chr1	236740444	.	C	CAAAT	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:236740444_C_CAAAT:90,6,0
chr1	236744424	.	A	AT	187.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.51;ReadPosRankSum=0.023;SOR=0.153	GT:AD:DP:GQ:PL	0/1:15,10:28:99:216,0,283
chr1	236744720	.	T	TA	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.79;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.38;ReadPosRankSum=-0.632;SOR=0.483	GT:AD:DP:GQ:PL	0/1:11,7:25:99:107,0,612
chr1	236755937	.	TA	T	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.673;SOR=0.569	GT:AD:DP:GQ:PL	0/1:7,12:21:99:219,0,144
chr1	236766304	.	AG	A	276.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=0.862;QD=16.28;ReadPosRankSum=-1.008;SOR=1.473	GT:AD:DP:GQ:PL	0/1:6,11:17:99:305,0,172
chr1	236767181	.	G	GA	460.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.803;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.72;ReadPosRankSum=-1.004;SOR=0.255	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,14:26:99:0|1:236767181_G_GA:489,0,479
chr1	236898683	.	AG	A	118.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.85;ReadPosRankSum=0.414;SOR=0.582	GT:AD:DP:GQ:PL	0/1:3,5:8:75:147,0,75
chr1	236899899	.	TC	T	3127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DP=277;ExcessHet=3.0103;FS=6.129;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.54;QD=11.94;ReadPosRankSum=-1.419;SOR=1.072	GT:AD:DP:GQ:PL	0/1:141,121:262:99:3156,0,3799
chr1	236902532	.	ATT	A	818.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.746;QD=17.06;ReadPosRankSum=0.046;SOR=0.638	GT:AD:DP:GQ:PL	0/1:18,30:54:99:847,0,559
chr1	236978992	.	T	TTCTG	3259.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DP=199;ExcessHet=3.0103;FS=6.418;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=2.16;QD=17.72;ReadPosRankSum=-2.363;SOR=0.375	GT:AD:DP:GQ:PL	0/1:98,86:184:99:3288,0,5474
chr1	236988593	.	A	AT	2048.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0;DP=185;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.43;QD=11.57;ReadPosRankSum=0.293;SOR=0.606	GT:AD:DP:GQ:PL	0/1:89,88:177:99:2077,0,1902
chr1	237013550	.	AT	A	586.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.266;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.56;ReadPosRankSum=-1.27;SOR=0.826	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,16:30:99:0|1:237013550_AT_A:615,0,817
chr1	237013914	.	CTGA	C	1640.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.48;ReadPosRankSum=0.134;SOR=1.042	GT:AD:DP:GQ:PL	0/1:31,42:73:99:1669,0,1324
chr1	237024397	.	CT	C	136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.2;ReadPosRankSum=1.03;SOR=0.593	GT:AD:DP:GQ:PL	0/1:9,10:27:99:165,0,191
chr1	237037998	.	CT	C	164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.83;ReadPosRankSum=0.706;SOR=0.97	GT:AD:DP:GQ:PL	0/1:29,14:46:99:193,0,694
chr1	237058996	.	C	CTATT	220.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.54;ReadPosRankSum=0.366;SOR=0.527	GT:AD:DP:GQ:PL	0/1:1,6:7:43:249,0,43
chr1	237063709	.	T	TA	61.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-1.834;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,4:6:72:0|1:237063709_T_TA:90,0,72
chr1	237063717	.	AAG	A	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.79;ReadPosRankSum=1.11;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,2:6:63:1|0:237063709_T_TA:63,0,162
chr1	237551241	.	G	GTC	77.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.64;ReadPosRankSum=0.48;SOR=0.283	GT:AD:DP:GQ:PL	0/1:6,3:9:99:106,0,238
chr1	237619875	.	AT	A,ATT	840.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-0.546;SOR=0.77	GT:AD:DP:GQ:PL	1/2:21,30,29:100:99:869,381,998,326,0,897
chr1	237632285	.	A	AT	862.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.26;ReadPosRankSum=-1.418;SOR=0.693	GT:AD:DP:GQ:PL	0/1:25,25:50:99:891,0,851
chr1	237632558	.	C	CA	267.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=-1.341;SOR=0.693	GT:AD:DP:GQ:PL	0/1:13,16:56:99:198,0,303
chr1	237632595	.	T	TGTG	348.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.909;SOR=1.244	GT:AD:DP:GQ:PL	0/1:14,10:24:99:377,0,568
chr1	237656124	.	A	AAAGG	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=-0.842;QD=16.38;ReadPosRankSum=-0.816;SOR=0.412	GT:AD:DP:GQ:PL	0/1:6,4:10:99:192,0,270
chr1	237675134	.	G	GA	99.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=10.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.53;ReadPosRankSum=0.947;SOR=3.726	GT:AD:DP:GQ:PL	0/1:14,8:27:99:128,0,151
chr1	237693610	.	C	CA	217.31	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.863;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=7.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=1.34;SOR=4.615	GT:AD:DP:GQ:PL	0/1:4,11:23:51:243,0,51
chr1	237794913	.	AT	A	212.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0.839;QD=21.28;ReadPosRankSum=-1.024;SOR=2.4	GT:AD:DP:GQ:PL	0/1:5,5:23:29:125,0,29
chr1	237806919	.	C	CT	98.18	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=1.47;SOR=0.527	GT:AD:DP:GQ:PL	1/1:1,6:7:10:126,10,0
chr1	237850666	.	C	CT,CTT	1469.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.05;ClippingRankSum=0;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.97;MQRankSum=-0.472;QD=11.39;ReadPosRankSum=-1.139;SOR=0.854	GT:AD:DP:GQ:PL	1/2:32,51,46:167:91:1498,277,666,91,0,1002
chr1	237863790	.	G	GT	111.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.149;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.43;ReadPosRankSum=-0.313;SOR=0.488	GT:AD:DP:GQ:PL	0/1:35,11:56:99:140,0,683
chr1	237872714	.	GT	G	843.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.17;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.1;MQRankSum=0.749;QD=17.95;ReadPosRankSum=0.038;SOR=1.27	GT:AD:DP:GQ:PL	1/1:4,43:47:37:872,37,0
chr1	237886195	.	ACT	A	193.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.91;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:222,15,0
chr1	237905568	.	T	TC	631.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=0;QD=9.29;ReadPosRankSum=0.515;SOR=0.357	GT:AD:DP:GQ:PL	0/1:29,39:68:99:660,0,482
chr1	237919409	.	GA	G	50.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.47;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.25;ReadPosRankSum=1.01;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:57:79,0,57
chr1	237949020	.	T	TG	94.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	237955649	.	CTGTGTGTG	C,CTGTG	2556.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.37;QD=29.55;SOR=3.881	GT:AD:DP:GQ:PL	1/2:0,25,31:69:99:2585,1440,1330,1038,0,1052
chr1	237955698	.	CGT	C	364.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.69;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.68;MQRankSum=-2.651;QD=14.03;ReadPosRankSum=-0.719;SOR=1.244	GT:AD:DP:GQ:PL	0/1:13,13:34:99:393,0,345
chr1	237958750	.	A	AT	270.31	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.17;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=0.625;QD=16.89;ReadPosRankSum=-1.278;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,12:20:28:296,0,28
chr1	237965133	.	A	AT	1909.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.065;ClippingRankSum=0;DP=157;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.868;QD=14.92;ReadPosRankSum=0.296;SOR=0.279	GT:AD:DP:GQ:PL	0/1:39,89:146:99:1938,0,549
chr1	240072721	.	G	GAAA	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.82;ReadPosRankSum=1.01;SOR=0.446	GT:AD:DP:GQ:PL	0/1:4,3:7:83:83,0,99
chr1	240255568	.	GGGC	G	927.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.74;QD=27.94;SOR=0.874	GT:AD:DP:GQ:PL	1/1:0,22:22:67:956,67,0
chr1	240286805	.	C	CAA	34.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr1	240341041	.	G	GA	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.82;ReadPosRankSum=-0.328;SOR=0.495	GT:AD:DP:GQ:PL	0/1:4,3:7:62:62,0,83
chr1	240370913	.	TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	T	482.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.828;ClippingRankSum=0;DP=208;ExcessHet=3.0103;FS=3.676;MLEAC=1;MLEAF=0.5;MQ=58.34;MQRankSum=0;QD=7.91;ReadPosRankSum=0.339;SOR=1.473	GT:AD:DP:GQ:PGT:PID:PL	0/1:48,13:61:99:0|1:240370913_TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC_T:511,0,1261
chr1	240370964	.	C	CA	1312.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DP=206;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.5;MQ=58.26;MQRankSum=-0.667;QD=16.41;ReadPosRankSum=5.04;SOR=1.105	GT:AD:DP:GQ:PGT:PID:PL	0/1:26,54:80:99:1|0:240370913_TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC_T:1341,0,837
chr1	240370967	.	CA	C	1363.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0;DP=208;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.5;MQ=58.27;MQRankSum=-0.695;QD=16.04;ReadPosRankSum=5.32;SOR=1.249	GT:AD:DP:GQ:PGT:PID:PL	0/1:29,56:85:99:1|0:240370913_TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC_T:1392,0,861
chr1	240370998	.	A	AGGAATACCTCCTCCACCCCCTCTACCCGGAGCG	1699.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0;DP=172;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.5;MQ=57.12;MQRankSum=-1.355;QD=16.04;ReadPosRankSum=-8.842;SOR=1.064	GT:AD:DP:GQ:PGT:PID:PL	0/1:40,66:106:99:1|0:240370913_TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC_T:1728,0,1028
chr1	240458107	.	C	CT	2954.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0;DP=247;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=2.08;QD=13.07;ReadPosRankSum=-0.767;SOR=0.613	GT:AD:DP:GQ:PL	0/1:95,131:230:99:2983,0,1661
chr1	240637258	.	GAT	G	64.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.63;ReadPosRankSum=-0.391;SOR=0.368	GT:AD:DP:GQ:PL	0/1:11,3:14:93:93,0,475
chr1	240657002	.	A	AT	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.45;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.6;ReadPosRankSum=1.37;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,4:8:65:65,0,77
chr1	241695972	.	A	ATAGTATGAGTTTTAATC	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=0.765;QD=13.64;ReadPosRankSum=-0.345;SOR=0.105	GT:AD:DP:GQ:PL	0/1:5,4:9:99:151,0,704
chr1	241729687	.	AAGCTCCCTGGTCAC	A	3469.77	PASS	AC=2;AF=1;AN=2;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=33.96;SOR=6.492	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3498,235,0
chr1	241796947	.	ATGC	A	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,99
chr1	241803731	.	AC	A	37.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr1	241838139	.	CCCTTCCTTCCTTCTTTCCTTCCTCCCTCCCTCCTTTCTTTCTTTCCTTCTTGCTTTTATTTCCTTCCTCTTATT	C	201.84	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.07;QD=33.24;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:18:230,18,0
chr1	241901460	.	ACTG	A	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.825;SOR=2.303	GT:AD:DP:GQ:PL	0/1:6,4:10:99:150,0,255
chr1	241913062	.	C	CT	901.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.59;MQRankSum=1.75;QD=13.46;ReadPosRankSum=0.216;SOR=0.637	GT:AD:DP:GQ:PL	0/1:28,39:67:99:930,0,565
chr1	241935987	.	AC	A	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.484;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=59.47;MQRankSum=0.494;QD=12.16;ReadPosRankSum=-0.003;SOR=0.12	GT:AD:DP:GQ:PL	0/1:6,5:11:99:162,0,209
chr1	241954005	.	TA	T	322.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.488;SOR=0.693	GT:AD:DP:GQ:PL	0/1:12,18:38:99:351,0,154
chr1	241958401	.	C	CTTGT	1524.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=8.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.2;ReadPosRankSum=-0.57;SOR=0.054	GT:AD:DP:GQ:PGT:PID:PL	0/1:27,36:63:99:0|1:241958401_C_CTTGT:1553,0,2588
chr1	242013592	.	A	AC	165.03	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.58;ReadPosRankSum=0.792;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,6:7:12:193,0,12
chr1	242048514	.	G	GTAAA,GTAAATAAATAAA	643.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.42;QD=28.66;SOR=4.047	GT:AD:DP:GQ:PL	1/2:0,7,8:15:99:672,378,357,294,0,267
chr1	242383170	.	T	TAC	378.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=0.099;SOR=0.404	GT:AD:DP:GQ:PL	0/1:16,11:27:99:407,0,631
chr1	242511556	.	AACAAAG	A	837.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=8.273;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=0.312;QD=14.44;ReadPosRankSum=0.237;SOR=0.059	GT:AD:DP:GQ:PL	0/1:34,24:58:99:866,0,2517
chr1	243332884	.	AAG	A	162.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=30.26;MQRankSum=0.676;QD=9.57;ReadPosRankSum=0.163;SOR=0.593	GT:AD:DP:GQ:PL	0/1:11,6:17:99:191,0,408
chr1	243434123	.	CT	C	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.27;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.14;ReadPosRankSum=1.05;SOR=0.569	GT:AD:DP:GQ:PL	0/1:7,6:13:95:95,0,125
chr1	243507680	.	C	CA	313.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=-1.51;SOR=0.165	GT:AD:DP:GQ:PL	0/1:12,11:23:99:342,0,381
chr1	243736210	.	CT	C	484.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.159;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.662;QD=11.54;ReadPosRankSum=1.97;SOR=0.96	GT:AD:DP:GQ:PL	0/1:15,27:54:99:513,0,250
chr1	244583801	.	T	TA	134.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.51;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr1	244802980	.	C	CAAA	60.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	244803205	.	CTT	C,CT	8081.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-2.842;ClippingRankSum=0;DP=345;ExcessHet=3.0103;FS=7.744;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.22;MQRankSum=0.347;QD=29.6;ReadPosRankSum=1.53;SOR=1.779	GT:AD:DP:GQ:PL	1/2:5,229,39:318:99:8110,701,123,5432,0,4736
chr1	244803490	.	C	CGTA	635.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;QD=31.01;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,15:15:45:664,45,0
chr1	245006492	.	T	TAGAAA	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.5;MQ=53.21;MQRankSum=-1.981;QD=5.82;ReadPosRankSum=-0.712;SOR=2.215	GT:AD:DP:GQ:PL	0/1:5,2:7:69:69,0,347
chr1	245018456	.	TAGCA	T	649.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.625;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.41;ReadPosRankSum=0.466;SOR=0.356	GT:AD:DP:GQ:PL	0/1:12,17:29:99:678,0,645
chr1	245025697	.	T	TA,TAAAAAAAAA	604.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.71;MQRankSum=-0.123;QD=28.8;ReadPosRankSum=0.533;SOR=1.609	GT:AD:DP:GQ:PL	1/2:2,12,7:35:99:633,379,386,247,0,745
chr1	245133549	.	GGC	G	729.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.19;SOR=0.914	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,18:18:54:1|1:245133539_A_G:758,54,0
chr1	245133623	.	T	TCCTCC	1250.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.27;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,28:28:87:1279,87,0
chr1	245180866	.	T	TA	76.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr1	246091456	.	ATG	A	322.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.9;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.93;ReadPosRankSum=0.043;SOR=1.781	GT:AD:DP:GQ:PGT:PID:PL	0/1:9,9:18:99:0|1:246091456_ATG_A:351,0,326
chr1	246091459	.	C	CAG	322.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.652;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.17;ReadPosRankSum=-0.933;SOR=2.215	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,9:16:99:0|1:246091456_ATG_A:351,0,326
chr1	246093465	.	GA	G	155.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=15.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-1.014;SOR=2.414	GT:AD:DP:GQ:PL	0/1:3,9:14:19:184,0,19
chr1	246489706	.	GA	G	896.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=22.99;SOR=2.362	GT:AD:DP:GQ:PL	1/1:0,39:39:99:925,117,0
chr1	246489769	.	TA	T	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.15;ReadPosRankSum=0.635;SOR=0.665	GT:AD:DP:GQ:PL	0/1:14,5:21:69:69,0,276
chr1	246489909	.	A	AT	169.85	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.97;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:17:198,17,0
chr1	246670140	.	T	TC	40.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
chr1	246670298	.	CCT	C	506.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.83;QD=34.71;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,13:13:39:535,39,0
chr1	246670626	.	A	AGGGGC	376.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=33.55;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr1	246704733	.	C	CG	344.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.892	GT:AD:DP:GQ:PL	1/1:0,9:9:30:373,30,0
chr1	246711816	.	GA	G	559.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.027;SOR=1.17	GT:AD:DP:GQ:PL	0/1:27,26:53:99:588,0,650
chr1	247007042	.	TA	T	338.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.17;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:47:367,47,0
chr1	247202362	.	C	CT	42.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=14.06;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:69,9,0
chr1	247597239	.	GTGTGTTCTGATGCTTTCTGTATTCCGGAGCTCTCTGATCAGA	G	1315.77	PASS	AC=2;AF=1;AN=2;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.09;QD=30.89;SOR=6.932	GT:AD:DP:GQ:PL	1/1:0,31:31:94:1344,94,0
chr1	247597656	.	TG	T	1479.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=33.63;SOR=4.712	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1508,132,0
chr1	247611570	.	CTT	C	112.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.619;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=0;QD=18.7;ReadPosRankSum=0.319;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,4:8:34:139,0,34
chr1	247615261	.	GA	G	3289.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DP=245;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.54;QD=13.94;ReadPosRankSum=1.07;SOR=0.783	GT:AD:DP:GQ:PL	0/1:127,109:236:99:3318,0,4009
chr1	247726822	.	CTTTT	C	3161.77	PASS	AC=2;AF=1;AN=2;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=29.87;SOR=1.81	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3190,220,0
chr1	247729206	.	CT	C	438.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.45;ReadPosRankSum=-0.436;SOR=0.792	GT:AD:DP:GQ:PL	0/1:39,29:93:99:467,0,808
chr1	247921789	.	A	AGTGT	274.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=6.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=36.12;ReadPosRankSum=-1.645;SOR=3.02	GT:AD:DP:GQ:PL	0/1:1,6:10:23:250,0,23
chr1	247978541	.	AAGG	A	7583.77	PASS	AC=2;AF=1;AN=2;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.55;QD=31.02;SOR=1.101	GT:AD:DP:GQ:PL	1/1:0,172:172:99:7612,518,0
chr1	248059779	.	G	GA	3130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0;DP=210;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=3.12;QD=16.31;ReadPosRankSum=-1.125;SOR=0.528	GT:AD:DP:GQ:PL	0/1:79,113:192:99:3159,0,2179
chr1	248437247	.	GCCCTAA	G	283.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.498;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.74;ReadPosRankSum=0.224;SOR=0.693	GT:AD:DP:GQ:PL	0/1:8,8:16:99:312,0,584
chr1	248570551	.	A	AGAGT	500.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=5.136	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:36:1|1:248570551_A_AGAGT:529,36,0
chr1	248570553	.	A	AT	500.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=4.977	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,11:11:36:1|1:248570551_A_AGAGT:529,36,0
chr1	248801944	.	TCAGCACG	T	5192.77	PASS	AC=2;AF=1;AN=2;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.47;QD=29.67;SOR=1.55	GT:AD:DP:GQ:PL	1/1:0,118:118:99:5221,356,0
chr1	248802249	.	T	TAGA	1135.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.65;QD=25.63;SOR=1.402	GT:AD:DP:GQ:PL	1/1:0,20:20:87:1164,87,0
chr1	248814209	.	GAT	G	410.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.765;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.5;MQ=42.54;MQRankSum=-2.558;QD=24.16;ReadPosRankSum=-0.151;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,11:17:99:0|1:248814209_GAT_G:439,0,219
chr1	249145072	.	C	CA	2087.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.88;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.11;QD=15.58;ReadPosRankSum=-0.237;SOR=0.764	GT:AD:DP:GQ:PL	0/1:73,61:134:99:2116,0,2521
chr1	249210600	.	T	TA	11.12	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.78;ReadPosRankSum=0.967;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:37:39,0,37
chr2	271998	.	CA	C	519.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.696;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=13.5;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.05;QD=9.12;ReadPosRankSum=-1.901;SOR=2.124	GT:AD:DP:GQ:PL	0/1:26,31:76:99:548,0,505
chr2	283231	.	A	AT	1132.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.866;QD=12.73;ReadPosRankSum=0.704;SOR=0.539	GT:AD:DP:GQ:PL	0/1:37,52:89:99:1161,0,693
chr2	676478	.	T	TGTAA	1987.77	PASS	AC=2;AF=1;AN=2;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.64;QD=35.57;SOR=3.056	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,42:42:99:1|1:676457_G_C:2016,135,0
chr2	1133188	.	G	GCACA	1015.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=6.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.93;ReadPosRankSum=1.05;SOR=2.712	GT:AD:DP:GQ:PL	0/1:34,26:63:99:1044,0,1570
chr2	1320370	.	A	ACCCTTATCTGAAATGC	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	1442551	.	AT	A	330.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.709;QD=10.02;ReadPosRankSum=-1.278;SOR=0.953	GT:AD:DP:GQ:PL	0/1:14,19:46:99:359,0,244
chr2	1491510	.	C	CA	159.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=4.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.56;ReadPosRankSum=-0.245;SOR=0.175	GT:AD:DP:GQ:PL	0/1:24,11:47:99:188,0,435
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	962.77	PASS	AC=2;AF=1;AN=2;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.48;QD=31.14;SOR=3.716	GT:AD:DP:GQ:PL	1/1:0,20:20:99:991,108,0
chr2	1696510	.	AAC	A	441.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=1.802	GT:AD:DP:GQ:PL	1/1:0,11:11:33:470,33,0
chr2	1813194	.	G	GA	94.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	3358458	.	ATTATGAAGTTAGAT	A	2312.77	PASS	AC=2;AF=1;AN=2;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=34.3;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2341,161,0
chr2	3597732	.	TAA	T	19.87	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.62;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:20:48,0,20
chr2	3600012	.	CCTCT	C	439.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.32;ReadPosRankSum=-0.647;SOR=1.739	GT:AD:DP:GQ:PL	0/1:12,12:24:99:468,0,714
chr2	3749151	.	GGAA	G	1802.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=1.94;QD=19.81;ReadPosRankSum=0.499;SOR=1.101	GT:AD:DP:GQ:PL	0/1:43,48:91:99:1831,0,1639
chr2	3815532	.	A	AT	224.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.811;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=0;QD=12.49;ReadPosRankSum=0.111;SOR=1.802	GT:AD:DP:GQ:PL	0/1:8,10:26:99:253,0,138
chr2	5834249	.	G	GTGA	1175.77	PASS	AC=2;AF=1;AN=2;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=30.2;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,28:28:83:1204,83,0
chr2	7001233	.	ACG	A	2075.77	PASS	AC=2;AF=1;AN=2;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=31.5;SOR=5.549	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,49:49:99:1|1:7001233_ACG_A:2104,150,0
chr2	7001249	.	ACACACACACC	A	906.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.94;MQRankSum=0.853;QD=23.86;ReadPosRankSum=0.324;SOR=2.147	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,33:38:39:0|1:7001233_ACG_A:935,0,39
chr2	7164325	.	AT	A	186.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=3.611	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,5:5:15:1|1:7164325_AT_A:215,15,0
chr2	7170157	.	TATC	T	1548.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.372;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.21;ReadPosRankSum=0.213;SOR=0.804	GT:AD:DP:GQ:PL	0/1:48,42:90:99:1577,0,2368
chr2	9484561	.	TAAAA	T	1222.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=30.67;SOR=6.736	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1251,84,0
chr2	9485119	.	GT	G	200.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.6;ReadPosRankSum=0.792;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,6:7:4:0|1:9485119_GT_G:227,0,4
chr2	9515099	.	TA	T	86.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.39;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.41;ReadPosRankSum=0.052;SOR=0.627	GT:AD:DP:GQ:PL	0/1:26,10:43:99:115,0,606
chr2	9540406	.	CTT	C	63.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.92;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:9540392_T_C:90,6,0
chr2	9548026	.	T	TG	88.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.01;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:116,12,0
chr2	9552171	.	CA	C	22.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.431;QD=3.8;ReadPosRankSum=0.623;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,4:6:23:51,0,23
chr2	9558905	.	C	CT	1058.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0;DP=171;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.33;QD=11.9;ReadPosRankSum=-0.104;SOR=2.266	GT:AD:DP:GQ:PL	0/1:33,56:130:99:1087,0,414
chr2	9572473	.	T	TA	59.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.28;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:10:87,0,10
chr2	9580540	.	G	GT	814.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=32.59;SOR=5.058	GT:AD:DP:GQ:PL	1/1:0,25:25:75:843,75,0
chr2	9583822	.	A	AG	3373.77	PASS	AC=2;AF=1;AN=2;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.8;QD=32.44;SOR=3.632	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3402,312,0
chr2	9614667	.	G	GGCCCC	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	9616301	.	TAGG	T	1525.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.19;QD=32.9;SOR=4.921	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1554,109,0
chr2	9630240	.	ATTGAT	A	725.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.93;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=-0.746;QD=12.51;ReadPosRankSum=-1.198;SOR=0.518	GT:AD:DP:GQ:PL	0/1:36,22:58:99:754,0,1425
chr2	9630244	.	AT	A	1037.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.47;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=0.829;QD=18.21;ReadPosRankSum=0.853;SOR=1.287	GT:AD:DP:GQ:PL	0/1:22,35:57:99:1066,0,758
chr2	9650350	.	C	CATAA	2690.77	PASS	AC=2;AF=1;AN=2;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.83;QD=29.91;SOR=2.948	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2719,186,0
chr2	9658388	.	C	CA	144.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.281;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,9:18:43:125,0,43
chr2	9770589	.	G	GCGGGGC	1174.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=7.692;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.984;QD=19.91;ReadPosRankSum=-2.195;SOR=0.198	GT:AD:DP:GQ:PL	0/1:28,31:59:99:1203,0,1644
chr2	9983591	.	A	AG	332.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.28;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,10:10:30:361,30,0
chr2	9985341	.	TC	T	3181.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0;DP=233;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.04;QD=14.2;ReadPosRankSum=-2.08;SOR=0.64	GT:AD:DP:GQ:PL	0/1:115,109:224:99:3210,0,3387
chr2	10183748	.	TGCC	T	192.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:221,15,0
chr2	10226306	.	G	GC	1030.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=1.96;QD=13.21;ReadPosRankSum=-1.37;SOR=1.365	GT:AD:DP:GQ:PL	0/1:43,35:78:99:1059,0,1356
chr2	10281903	.	G	GC	395.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.25;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,11:11:36:424,36,0
chr2	10282679	.	G	GC	85.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	10332876	.	AC	A	119.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.44;ReadPosRankSum=-1.483;SOR=0.321	GT:AD:DP:GQ:PL	0/1:15,7:22:99:148,0,393
chr2	10762302	.	TA	T	2732.77	PASS	AC=2;AF=1;AN=2;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=2.568	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2761,223,0
chr2	10799467	.	TGGG	T	390.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=36.27;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,6:12:34:342,34,0
chr2	10808776	.	C	CAA	2434.77	PASS	AC=2;AF=1;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=28.06;SOR=0.804	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2463,166,0
chr2	10924685	.	AC	A	140.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=31.72;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,4:4:12:1|1:10924685_AC_A:168,12,0
chr2	10928694	.	GA	G,GAAA	253.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.8;MQRankSum=0.709;QD=12.69;ReadPosRankSum=0.893;SOR=3.014	GT:AD:DP:GQ:PL	1/2:4,9,7:25:99:282,131,260,121,0,372
chr2	10959242	.	TC	T	106.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.2;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,4:9:99:135,0,175
chr2	11273407	.	G	GTC,GTCTC	767.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=4.191;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=32.43;ReadPosRankSum=-0.083;SOR=1.198	GT:AD:DP:GQ:PL	1/2:1,4,16:21:96:796,513,489,96,0,100
chr2	11280500	.	TA	T	88.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=0.396;QD=6.83;ReadPosRankSum=0.669;SOR=0.593	GT:AD:DP:GQ:PL	0/1:4,9:13:32:117,0,32
chr2	11295226	.	C	CG	93.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.26;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:121,12,0
chr2	11300927	.	TAAA	T	510.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.072;SOR=0.144	GT:AD:DP:GQ:PL	0/1:32,15:58:99:539,0,1154
chr2	11304471	.	A	AT	215.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.476;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.44;MQRankSum=-0.416;QD=13.49;ReadPosRankSum=0.511;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,12:17:99:244,0,105
chr2	11304634	.	A	AT	23.58	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=11.79;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr2	11317845	.	C	CT	1038.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.74;SOR=0.542	GT:AD:DP:GQ:PL	0/1:52,49:118:99:1067,0,947
chr2	11348364	.	C	CTAACT	626.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.22;ReadPosRankSum=-1.207;SOR=1.609	GT:AD:DP:GQ:PL	0/1:16,15:31:99:655,0,1102
chr2	11348727	.	C	CT	33.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:9:61,0,9
chr2	11680896	.	CAA	C	961.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,22:22:66:990,66,0
chr2	11810003	.	CCAG	C	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.06;ReadPosRankSum=0.339;SOR=0.859	GT:AD:DP:GQ:PL	0/1:10,3:13:81:81,0,411
chr2	11931770	.	TTTG	T	1800.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.536;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.94;QD=19.79;ReadPosRankSum=0.557;SOR=0.812	GT:AD:DP:GQ:PL	0/1:43,48:91:99:1829,0,1722
chr2	11945108	.	G	GT	158.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.11;ReadPosRankSum=0.231;SOR=1.657	GT:AD:DP:GQ:PL	0/1:33,18:66:99:187,0,651
chr2	14775299	.	GA	G	523.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=1.93;SOR=1.402	GT:AD:DP:GQ:PGT:PID:PL	0/1:34,20:54:99:0|1:14775299_GA_G:552,0,1010
chr2	15319070	.	TA	T	159.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.98;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=5.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.882;SOR=0.078	GT:AD:DP:GQ:PL	0/1:6,9:19:78:188,0,78
chr2	15378822	.	G	GAATT	3474.77	PASS	AC=2;AF=1;AN=2;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=30.81;SOR=1.795	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3503,243,0
chr2	15417280	.	ATT	A	542.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.816;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=-0.095;SOR=0.946	GT:AD:DP:GQ:PGT:PID:PL	0/1:19,17:36:99:0|1:15417280_ATT_A:571,0,1067
chr2	15491994	.	GCACACACACA	G	1038.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.64;ReadPosRankSum=1.54;SOR=0.871	GT:AD:DP:GQ:PL	0/1:13,26:46:99:1067,0,957
chr2	15523307	.	TA	T	342.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.238;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.399;SOR=0.678	GT:AD:DP:GQ:PL	0/1:15,19:34:99:371,0,295
chr2	15533734	.	G	GAAATGAAAGCGTATGTCTACAC	693.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.784;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.92;ReadPosRankSum=-0.987;SOR=1.609	GT:AD:DP:GQ:PL	0/1:16,13:29:99:722,0,701
chr2	15601287	.	A	AT	674.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=6.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.87;ReadPosRankSum=2.48;SOR=2.67	GT:AD:DP:GQ:PL	0/1:19,21:40:99:703,0,573
chr2	15618164	.	C	CATGCTGCATACATACCCTAGGCTCTGACCT	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.6;ReadPosRankSum=-1.611;SOR=0.105	GT:AD:DP:GQ:PL	0/1:3,5:8:99:201,0,753
chr2	15694164	.	T	TA	1462.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=3.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.41;ReadPosRankSum=-0.094;SOR=1.14	GT:AD:DP:GQ:PL	0/1:41,43:84:99:1491,0,1399
chr2	15744484	.	CT	C	188.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.9;ReadPosRankSum=0.774;SOR=0.412	GT:AD:DP:GQ:PL	0/1:22,10:32:99:217,0,603
chr2	17691950	.	CA	C	56.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.31;ReadPosRankSum=2.61;SOR=1.27	GT:AD:DP:GQ:PL	0/1:4,5:11:85:85,0,90
chr2	17912864	.	CGT	C	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.35;ReadPosRankSum=0.524;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,95
chr2	17926925	.	AT	A	263.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.38;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,10:10:30:292,30,0
chr2	17959420	.	TAC	T	495.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=30.08;SOR=5.136	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:36:1|1:17959420_TAC_T:524,36,0
chr2	17959464	.	CAT	C	241.84	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=3.611	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,5:5:18:1|1:17959420_TAC_T:270,18,0
chr2	20201922	.	T	TACACACACAC	74.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.69;ReadPosRankSum=0;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:99:103,0,197
chr2	20205423	.	A	AAAAG	801.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.05;MQRankSum=2.01;QD=20.04;ReadPosRankSum=-0.461;SOR=0.798	GT:AD:DP:GQ:PL	0/1:19,21:40:99:830,0,1026
chr2	20401858	.	TA	T	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.98;ReadPosRankSum=0.258;SOR=0.892	GT:AD:DP:GQ:PL	0/1:5,6:11:70:83,0,70
chr2	20453928	.	CT	C	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.6;ReadPosRankSum=-1.133;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:73:73,0,81
chr2	20454511	.	CA	C	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.04;ReadPosRankSum=2.4;SOR=0.197	GT:AD:DP:GQ:PL	0/1:14,6:20:69:69,0,290
chr2	20455176	.	GT	G	216.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.099;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=0.678;QD=9.86;ReadPosRankSum=-1.249;SOR=0.914	GT:AD:DP:GQ:PL	0/1:8,14:30:99:231,0,188
chr2	20490196	.	TATTTACCATTCCTGTCGTTGAGTCTCA	T	152.98	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.16;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:13:181,13,0
chr2	20798006	.	CT	C	346.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0.912;QD=19.26;ReadPosRankSum=-0.227;SOR=0.627	GT:AD:DP:GQ:PL	0/1:7,11:18:99:375,0,213
chr2	20866888	.	CG	C	80.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr2	21255573	.	C	CCATCT	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.29;ReadPosRankSum=-0.431;SOR=1.179	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,273
chr2	21266774	.	GGCAGCGCCA	G	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:81:81,0,99
chr2	23907532	.	TCTC	T	433.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.13;QD=31.01;SOR=1.27	GT:AD:DP:GQ:PL	1/1:0,11:11:34:462,34,0
chr2	23916032	.	TC	T	132.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=26.58;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:161,15,0
chr2	24110911	.	G	GA	354.78	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=20.87;ReadPosRankSum=0.614;SOR=4.294	GT:AD:DP:GQ:PL	1/1:1,16:17:27:383,27,0
chr2	24345196	.	C	CA	99.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.99;ReadPosRankSum=-0.634;SOR=2.004	GT:AD:DP:GQ:PL	0/1:15,10:33:99:128,0,310
chr2	24387178	.	G	GC	2265.77	PASS	AC=2;AF=1;AN=2;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=31.08;SOR=1.143	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2294,186,0
chr2	24400411	.	A	AT	27.57	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=13.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr2	24402127	.	C	CAA	904.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=31.83;SOR=1.508	GT:AD:DP:GQ:PL	1/1:0,21:21:63:933,63,0
chr2	24550867	.	CAA	C,CA	1157.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=16.54;ReadPosRankSum=-0.954;SOR=1.179	GT:AD:DP:GQ:PL	1/2:9,22,39:72:99:1186,594,870,288,0,292
chr2	24888854	.	T	TTTA	22.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.11;QD=3.8;ReadPosRankSum=0.842;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,2:6:51:51,0,161
chr2	24905684	.	C	CA	693.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.35;SOR=4.294	GT:AD:DP:GQ:PL	1/1:0,17:17:54:722,54,0
chr2	24933592	.	AT	A	196.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr2	24952740	.	C	CT	1092.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=27.39;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1121,84,0
chr2	24991385	.	CAA	C	18.86	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.29;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:22:47,0,22
chr2	25037489	.	TCA	T	224.78	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:253,24,0
chr2	25046361	.	A	ATT	268.8	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=31.99;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:21:1|1:25046355_T_C:297,21,0
chr2	25061270	.	GGGGTGGGGT	G	438.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0.873;QD=23.09;ReadPosRankSum=-0.891;SOR=0.093	GT:AD:DP:GQ:PL	0/1:7,12:19:99:467,0,620
chr2	25497684	.	A	AC	254.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.46;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr2	25875401	.	T	TA	64.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.4;ReadPosRankSum=0.102;SOR=0.476	GT:AD:DP:GQ:PL	0/1:19,8:31:93:93,0,350
chr2	26161226	.	C	CA	195.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.33;ReadPosRankSum=0.067;SOR=0.458	GT:AD:DP:GQ:PL	0/1:3,9:16:18:209,0,18
chr2	26415088	.	T	TA	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.1;ReadPosRankSum=-0.543;SOR=0.616	GT:AD:DP:GQ:PL	0/1:13,5:18:66:66,0,204
chr2	26454836	.	CA	C	16.87	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.37;ReadPosRankSum=0;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:26:45,0,26
chr2	26477125	.	G	GACT	6033.77	PASS	AC=2;AF=1;AN=2;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=28.66;SOR=0.723	GT:AD:DP:GQ:PL	1/1:0,134:134:99:6062,409,0
chr2	26484080	.	A	ACC	704.77	PASS	AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.93;QD=31.25;SOR=6.439	GT:AD:DP:GQ:PL	1/1:0,18:24:63:719,63,0
chr2	26500101	.	CT	C	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0.812;QD=2.15;ReadPosRankSum=-0.549;SOR=0.446	GT:AD:DP:GQ:PL	0/1:7,5:12:54:54,0,96
chr2	26507331	.	C	CTT	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.96;ReadPosRankSum=-1.645;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,3:5:38:53,0,38
chr2	26535144	.	T	TG	134.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.98;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr2	26586946	.	CTTTTTTT	C,CTTTTT	157.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=26.29;SOR=2.303	GT:AD:DP:GQ:PL	1/2:0,3,3:6:78:186,89,117,90,0,78
chr2	26663187	.	T	TTGTG	111.77	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=37.37;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:4:11:107,11,0
chr2	26671092	.	C	CA	160.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.69;MQRankSum=0.16;QD=5.95;ReadPosRankSum=-0.122;SOR=0.77	GT:AD:DP:GQ:PL	0/1:13,14:27:99:189,0,176
chr2	26700819	.	TGG	T	719.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=8.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.49;ReadPosRankSum=-1.267;SOR=0.051	GT:AD:DP:GQ:PL	0/1:13,19:32:99:748,0,467
chr2	26702057	.	GT	G	471.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.88;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=2.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=0.18;SOR=1.714	GT:AD:DP:GQ:PL	0/1:17,16:33:99:500,0,528
chr2	26794795	.	GAACTT	G	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=-0.674;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:75:120,0,75
chr2	26794844	.	AT	A	90.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.405;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:99:119,0,111
chr2	26795217	.	GT	G	105.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.26;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,4:4:12:1|1:26795217_GT_G:133,12,0
chr2	27015141	.	G	GC	2347.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DP=188;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.09;QD=13.26;ReadPosRankSum=-0.256;SOR=0.772	GT:AD:DP:GQ:PL	0/1:95,82:177:99:2376,0,2828
chr2	27016302	.	G	GT	90.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.16;ReadPosRankSum=1.28;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:21:119,0,21
chr2	27169637	.	TC	T	106.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.345;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,4:9:99:135,0,175
chr2	27262763	.	GGGA	G	2324.77	PASS	AC=2;AF=1;AN=2;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.66;QD=36.8;SOR=1.835	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2353,163,0
chr2	27303976	.	CGTGT	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	27323936	.	G	GC	199.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.65;ReadPosRankSum=-1.876;SOR=0.197	GT:AD:DP:GQ:PL	0/1:4,8:12:99:228,0,105
chr2	27440013	.	CT	C	170.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.4;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:199,21,0
chr2	27458741	.	C	CA	30.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.16;ReadPosRankSum=0.524;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,3:5:29:59,0,29
chr2	27459885	.	A	AT	14.2	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.84;ReadPosRankSum=-0.524;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:13:42,0,13
chr2	27522543	.	C	CCTAT	174.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.97;ReadPosRankSum=-0.876;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:85:203,0,85
chr2	27535311	.	T	TG	19399.8	PASS	AC=2;AF=1;AN=2;DP=568;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=30.03;SOR=1.421	GT:AD:DP:GQ:PL	1/1:0,547:547:99:19428,1660,0
chr2	27822283	.	G	GAC	68.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=1.61;SOR=0.02	GT:AD:DP:GQ:PL	0/1:6,2:8:97:97,0,246
chr2	27852117	.	A	AGGTCTT	3067.77	PASS	AC=2;AF=1;AN=2;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.831	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,60:60:99:1|1:27852117_A_AGGTCTT:3096,216,0
chr2	27852150	.	C	CG	1337.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.411;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=0.637;SOR=0.775	GT:AD:DP:GQ:PL	0/1:38,50:88:99:1366,0,924
chr2	28210681	.	C	CA	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-1.465;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,3:7:30:43,0,30
chr2	28771452	.	CTA	C	2946.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.37;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=2.655;MLEAC=2;MLEAF=1;MQ=60.38;MQRankSum=0.351;QD=34.67;ReadPosRankSum=0.241;SOR=1.694	GT:AD:DP:GQ:PL	1/1:2,83:87:99:2975,185,0
chr2	28788428	.	AG	A	122.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr2	28816814	.	C	CTT,CTTT	3034.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=115;ExcessHet=3.0103;FS=3.231;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;MQRankSum=0.2;QD=24.07;ReadPosRankSum=-1.064;SOR=0.416	GT:AD:DP:GQ:PL	1/2:1,26,53:101:99:3063,1250,1056,474,0,341
chr2	28824336	.	C	CCACA	184.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=-0.154;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,6:12:99:213,0,241
chr2	28847666	.	T	TC	44.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr2	28849461	.	CCCCGAGCTCCTTGCT	C	1630.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.318;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.73;ReadPosRankSum=0.693;SOR=1.172	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1659,0,7293
chr2	28855088	.	C	CTT	164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.071;SOR=0.293	GT:AD:DP:GQ:PL	0/1:7,7:22:99:193,0,228
chr2	28855918	.	A	AG	4781.77	PASS	AC=2;AF=1;AN=2;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=29.1;SOR=1.699	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4810,409,0
chr2	29011337	.	TTGTA	T	152.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	29052283	.	G	GT	191.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-0.791;SOR=2.303	GT:AD:DP:GQ:PL	0/1:10,11:24:99:220,0,137
chr2	29075164	.	GTTTTT	G	241.84	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.79;QD=30.39;SOR=3.258	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,4:4:18:1|1:29075164_GTTTTT_G:270,18,0
chr2	29075170	.	T	TGAGAC	241.84	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.79;QD=31.99;SOR=3.258	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,4:4:18:1|1:29075164_GTTTTT_G:270,18,0
chr2	29145663	.	GT	G,GTTTTT	417.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=4.625;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=15.47;ReadPosRankSum=-0.58;SOR=2.985	GT:AD:DP:GQ:PL	1/2:6,13,8:32:86:446,273,387,86,0,618
chr2	29158613	.	CAAAAAA	C	225.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=32.79;ReadPosRankSum=1.6;SOR=5.131	GT:AD:DP:GQ:PL	0/1:1,4:13:87:230,0,87
chr2	29287926	.	C	CGCT	1405.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.54;ReadPosRankSum=0.142;SOR=0.358	GT:AD:DP:GQ:PL	0/1:48,37:85:99:1434,0,2061
chr2	29366875	.	C	CACAG	3632.77	PASS	AC=2;AF=1;AN=2;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.69;SOR=6.568	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3661,246,0
chr2	29390299	.	AG	A	1083.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=12.41;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.25;QD=12.75;ReadPosRankSum=0.767;SOR=1.988	GT:AD:DP:GQ:PL	0/1:51,34:85:99:1112,0,1768
chr2	29416025	.	C	CATTG	1606.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.51;QD=18.68;ReadPosRankSum=-0.333;SOR=0.672	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1635,0,2531
chr2	29430942	.	GTC	G	1057.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=7.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.9;ReadPosRankSum=-0.121;SOR=0.469	GT:AD:DP:GQ:PL	0/1:39,32:71:99:1086,0,1328
chr2	30961400	.	AG	A	1222.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=6.651;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.867;QD=20.05;ReadPosRankSum=0.829;SOR=2.083	GT:AD:DP:GQ:PL	0/1:25,36:61:99:1251,0,810
chr2	30968760	.	ATT	A	42.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.87;MQRankSum=0.674;QD=8.56;ReadPosRankSum=0.524;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:25:71,0,25
chr2	30999023	.	AT	A	80.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.21;ReadPosRankSum=0.699;SOR=0.551	GT:AD:DP:GQ:PL	0/1:7,6:13:99:109,0,148
chr2	31348335	.	ACC	A	58.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	31489627	.	TAC	T	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.21;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.49;ReadPosRankSum=-0.993;SOR=0.197	GT:AD:DP:GQ:PL	0/1:14,4:20:91:91,0,370
chr2	31572482	.	T	TG	1824.77	PASS	AC=2;AF=1;AN=2;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=5.247	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1853,171,0
chr2	31573234	.	CTTT	C	82.77	PASS	AC=1;AF=0.5;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=30.53;SOR=3.258	GT:AD:DP:GQ:PL	0/1:0,2:4:7:71,0,7
chr2	31805880	.	A	AG	1111.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.74;SOR=0.818	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1140,96,0
chr2	31806130	.	G	GC	94.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	32095023	.	TA	T	12.05	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.15;MQRankSum=0;QD=2.41;ReadPosRankSum=-0.524;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:35:40,0,35
chr2	32340026	.	A	AT	12.65	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.16;ReadPosRankSum=0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:9:40,0,9
chr2	32352219	.	TTTTG	T	162.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.366;QD=23.25;ReadPosRankSum=-1.068;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,5:7:80:191,0,80
chr2	32361482	.	T	TC	94.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	32362079	.	G	GTATA	727.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.14;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=1.47;QD=18.19;ReadPosRankSum=-0.65;SOR=0.965	GT:AD:DP:GQ:PL	0/1:20,20:40:99:756,0,1031
chr2	32372414	.	GTTT	G	126.03	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.263;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.394;SOR=2.303	GT:AD:DP:GQ:PL	0/1:5,6:20:99:154,0,312
chr2	32412065	.	C	CA	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.266;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.55;ReadPosRankSum=-0.357;SOR=0.18	GT:AD:DP:GQ:PL	0/1:8,6:16:78:78,0,118
chr2	32449871	.	ATTTT	A	586.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.63;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-0.715;SOR=0.994	GT:AD:DP:GQ:PL	0/1:29,17:46:99:615,0,1428
chr2	32449879	.	T	TAAA	399.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.08;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;SOR=0.746	GT:AD:DP:GQ:PL	0/1:22,11:35:99:428,0,870
chr2	32461493	.	T	TC	294.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.03;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:323,24,0
chr2	32481793	.	AT	A	2318.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.67;ReadPosRankSum=-0.973;SOR=0.903	GT:AD:DP:GQ:PGT:PID:PL	0/1:48,59:107:99:0|1:32481793_AT_A:2347,0,2166
chr2	32655873	.	C	CT	300.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.84;ReadPosRankSum=1.96;SOR=1.442	GT:AD:DP:GQ:PL	0/1:23,21:86:99:329,0,426
chr2	32688022	.	CAAA	C	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-0.524;SOR=0.859	GT:AD:DP:GQ:PL	0/1:2,3:5:58:75,0,58
chr2	32690317	.	AT	A	174.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.7;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.6;ReadPosRankSum=0.325;SOR=0.428	GT:AD:DP:GQ:PL	0/1:12,11:31:99:203,0,139
chr2	32713112	.	A	AT	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=1.022	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,5:5:15:1|1:32713112_A_AT:225,15,0
chr2	32713119	.	A	AC	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=1.022	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,5:5:15:1|1:32713112_A_AT:225,15,0
chr2	32724590	.	GTC	G	465.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.287;ClippingRankSum=0;DP=171;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.92;QD=3.15;ReadPosRankSum=-1.113;SOR=0.547	GT:AD:DP:GQ:PL	0/1:123,25:157:99:494,0,3896
chr2	32733343	.	C	CTTTTT	682.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.984;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.83;ReadPosRankSum=-0.348;SOR=1.609	GT:AD:DP:GQ:PL	0/1:10,7:63:99:519,0,957
chr2	32757238	.	G	GTGTGTGTGTGT	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=11.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.21;ReadPosRankSum=-0.595;SOR=2.788	GT:AD:DP:GQ:PL	0/1:10,3:13:96:96,0,315
chr2	32983299	.	TA	T	264.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=3.08;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=0.938;QD=9.46;ReadPosRankSum=-0.86;SOR=0.138	GT:AD:DP:GQ:PL	0/1:12,16:28:99:293,0,205
chr2	33004907	.	G	GTCC	556.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,13:13:39:585,39,0
chr2	33413494	.	C	CAAAAAAAA	522.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;QD=30.36;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,7:14:47:515,47,0
chr2	33487607	.	CTT	C	41.85	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:18:70,0,18
chr2	33487748	.	CT	C	253.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.3;QD=5.08;ReadPosRankSum=1.8;SOR=0.575	GT:AD:DP:GQ:PL	0/1:32,18:52:99:282,0,731
chr2	33488079	.	GT	G	42.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=14.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:69,9,0
chr2	33586464	.	C	CT	541.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.599;SOR=0.644	GT:AD:DP:GQ:PL	0/1:13,27:58:99:570,0,209
chr2	33622573	.	C	CTTT	84.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.792;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.91;ReadPosRankSum=-0.712;SOR=0.18	GT:AD:DP:GQ:PL	0/1:2,3:7:74:108,0,74
chr2	33787976	.	CCTAA	C	466.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,11:11:33:495,33,0
chr2	33788060	.	CTT	C	82.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
chr2	36773906	.	ATTTTT	A	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.11;ReadPosRankSum=-0.697;SOR=0.446	GT:AD:DP:GQ:PL	0/1:4,3:7:78:78,0,214
chr2	36776049	.	GT	G	22.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.51;MQRankSum=0.431;QD=7.61;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:23:51,0,23
chr2	36824956	.	G	GC	85.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	37078095	.	A	ATT	365.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=5.047;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=0.957;QD=10.76;ReadPosRankSum=-0.101;SOR=2.119	GT:AD:DP:GQ:PL	0/1:19,15:42:99:394,0,608
chr2	37114183	.	A	AAGAC	146.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=31.31;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr2	37127023	.	GCCTA	G	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-1.383;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,106
chr2	37129618	.	A	ATAAT	1608.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=6.869	GT:AD:DP:GQ:PL	1/1:0,30:30:99:1637,111,0
chr2	37217563	.	TG	T	53.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.68;ReadPosRankSum=-1.368;SOR=0.446	GT:AD:DP:GQ:PL	0/1:4,3:7:82:82,0,113
chr2	37246815	.	A	AT	150.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.607;SOR=0.368	GT:AD:DP:GQ:PL	0/1:8,5:13:99:179,0,258
chr2	37260027	.	G	GT	64.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.63;ReadPosRankSum=-0.206;SOR=0.495	GT:AD:DP:GQ:PL	0/1:9,5:16:93:93,0,142
chr2	37280763	.	G	GA	295.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=6.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.686;SOR=0.053	GT:AD:DP:GQ:PL	0/1:14,16:30:99:324,0,248
chr2	37302556	.	GA	G	1152.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.02;SOR=3.657	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1181,143,0
chr2	37342188	.	C	CT	14.92	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.97;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:1:40,0,1
chr2	37373982	.	A	AT	10335.8	PASS	AC=2;AF=1;AN=2;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.8;QD=28.39;SOR=1.646	GT:AD:DP:GQ:PL	1/1:0,263:263:99:10364,791,0
chr2	37429800	.	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAATAAAAT	A	340.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.6;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.34;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,10:14:99:369,0,354
chr2	37447464	.	A	AG	291.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.61;MQRankSum=-1.447;QD=12.69;ReadPosRankSum=0.308;SOR=0.616	GT:AD:DP:GQ:PL	0/1:12,11:23:99:320,0,471
chr2	37447627	.	C	CA	1030.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.239;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.283;SOR=0.588	GT:AD:DP:GQ:PL	0/1:37,49:88:99:1059,0,684
chr2	37483771	.	ATT	A	414.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.19;ReadPosRankSum=0.717;SOR=1.675	GT:AD:DP:GQ:PL	0/1:3,4:29:36:180,0,36
chr2	37494489	.	T	TA	48.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=1.38;QD=2.03;ReadPosRankSum=-0.63;SOR=0.073	GT:AD:DP:GQ:PL	0/1:19,5:30:77:77,0,335
chr2	38179414	.	CTG	C	10081.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.879;ClippingRankSum=0;DP=571;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=2.55;QD=18.2;ReadPosRankSum=-1.119;SOR=0.69	GT:AD:DP:GQ:PL	0/1:287,267:554:99:10110,0,11852
chr2	38216766	.	C	CT	527.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=23.152;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.5;QD=7.76;ReadPosRankSum=0.563;SOR=0.489	GT:AD:DP:GQ:PL	0/1:39,29:75:99:556,0,696
chr2	38297654	.	C	CA	55.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:82,9,0
chr2	38523097	.	G	GA	690.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.46;QD=9.46;ReadPosRankSum=0.629;SOR=0.836	GT:AD:DP:GQ:PL	0/1:37,36:73:99:719,0,681
chr2	38537771	.	CTTTTT	C	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.96;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.5;MQRankSum=-0.674;QD=12.29;ReadPosRankSum=0.598;SOR=0.991	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,102
chr2	38541581	.	C	CTAT	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.25;ReadPosRankSum=0.608;SOR=0.495	GT:AD:DP:GQ:PL	0/1:4,3:7:99:156,0,199
chr2	38570291	.	TAA	T	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=0.315;SOR=1.402	GT:AD:DP:GQ:PL	0/1:3,6:17:99:105,0,325
chr2	38570757	.	TC	T	217.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=6.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=-0.088;SOR=2.67	GT:AD:DP:GQ:PL	0/1:14,10:24:99:246,0,372
chr2	38793508	.	C	CA	12.05	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.04;MQRankSum=0;QD=3.01;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:33:40,0,33
chr2	38968123	.	CA	C	214.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.33;QD=5.11;ReadPosRankSum=0.068;SOR=1.508	GT:AD:DP:GQ:PL	0/1:25,17:55:99:243,0,489
chr2	38975332	.	G	GT	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=1.07;QD=3.42;ReadPosRankSum=0.253;SOR=0.43	GT:AD:DP:GQ:PL	0/1:14,9:28:99:107,0,275
chr2	38976658	.	TTAAAA	T	2702.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.05;ClippingRankSum=0;DP=173;ExcessHet=3.0103;FS=4.976;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.94;QD=16.58;ReadPosRankSum=0.232;SOR=0.393	GT:AD:DP:GQ:PL	0/1:90,73:163:99:2731,0,5657
chr2	39050061	.	AT	A	635.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=33.46;SOR=5.994	GT:AD:DP:GQ:PL	1/1:0,19:19:57:664,57,0
chr2	39085573	.	CTG	C	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.842;QD=6.95;ReadPosRankSum=0;SOR=2.245	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,136
chr2	39109361	.	G	GTTT	59.77	PASS	AC=1;AF=0.5;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.65;QD=29.88;SOR=0.693	GT:AD:DP:GQ:PL	0/1:0,2:4:37:47,0,37
chr2	39162785	.	CT	C	889.77	PASS	AC=2;AF=1;AN=2;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.72;SOR=7.223	GT:AD:DP:GQ:PL	1/1:0,36:36:99:918,108,0
chr2	39170932	.	GT	G	164.53	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=16.45;ReadPosRankSum=1.28;SOR=1.802	GT:AD:DP:GQ:PL	1/1:1,9:10:3:191,3,0
chr2	39224615	.	G	GT	1081.77	PASS	AC=2;AF=1;AN=2;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=26.38;SOR=4.073	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1110,122,0
chr2	39224747	.	A	ATT	73.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:10:101,10,0
chr2	39238037	.	C	CTTCT	184.77	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;QD=32.65;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,3:5:18:167,18,0
chr2	39251375	.	T	TCAC	1161.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=28.1;SOR=5.211	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1190,81,0
chr2	39402978	.	A	AG	173.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr2	39411863	.	A	ATG	242.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=1.05;QD=11.56;ReadPosRankSum=1.62;SOR=0.61	GT:AD:DP:GQ:PL	0/1:11,10:21:99:271,0,294
chr2	39517225	.	CAAAAAAAA	C	108.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.56;QD=30.66;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	39536689	.	A	AT	117.56	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=0.299;SOR=4.073	GT:AD:DP:GQ:PL	0/1:5,8:23:67:138,0,67
chr2	39542658	.	AT	A	209.94	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.147;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.26;MQRankSum=0.64;QD=16.15;ReadPosRankSum=-1.474;SOR=2.303	GT:AD:DP:GQ:PL	1/1:1,12:13:14:238,14,0
chr2	40655563	.	CCACACACACACACACA	C,CCACACACACACA	2490.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.84;QD=29.42;SOR=3.511	GT:AD:DP:GQ:PL	1/2:0,37,24:65:99:2519,1010,1283,1512,0,1431
chr2	42490538	.	C	CT	52.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.54;ReadPosRankSum=0.18;SOR=1.981	GT:AD:DP:GQ:PL	0/1:2,5:7:0:78,0,0
chr2	42508204	.	CA	C	59.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.13;ReadPosRankSum=0.305;SOR=0.425	GT:AD:DP:GQ:PL	0/1:21,7:36:88:88,0,499
chr2	42719847	.	T	TG	144.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.93;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:12:1|1:42719847_T_TG:172,12,0
chr2	42719860	.	G	GC	252.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=30.19;SOR=4.174	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,7:7:21:1|1:42719847_T_TG:281,21,0
chr2	42922888	.	AT	A	1211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=0.861;QD=16.38;ReadPosRankSum=-0.269;SOR=0.892	GT:AD:DP:GQ:PL	0/1:12,62:82:50:1240,0,50
chr2	42936419	.	G	GA	174.78	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.42;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:26:203,26,0
chr2	42996709	.	ATGTGTGTGTG	A	316.8	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=36.2;ReadPosRankSum=-0.589;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,8:9:21:345,21,0
chr2	42996759	.	AAGAG	A	511.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.445	GT:AD:DP:GQ:PL	1/1:0,12:12:36:540,36,0
chr2	43451739	.	CCTG	C	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.86;ReadPosRankSum=-0.921;SOR=0.495	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,283
chr2	43755265	.	CT	C	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.86;ReadPosRankSum=-1.465;SOR=0.892	GT:AD:DP:GQ:PL	0/1:4,5:9:44:63,0,44
chr2	43778857	.	GA	G	491.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0.965;QD=11.71;ReadPosRankSum=-0.279;SOR=0.237	GT:AD:DP:GQ:PL	0/1:14,28:47:99:520,0,285
chr2	43805453	.	CT	C	33.89	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,3:4:1:59,1,0
chr2	43817783	.	C	CAA	21.85	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.28;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:20:50,0,20
chr2	43817950	.	CT	C	718.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=4.58;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.05;QD=9.46;ReadPosRankSum=1.96;SOR=1.539	GT:AD:DP:GQ:PL	0/1:39,37:76:99:747,0,902
chr2	43818957	.	A	AG	235.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=0.674;QD=14.74;ReadPosRankSum=-1.9;SOR=0.693	GT:AD:DP:GQ:PL	0/1:8,8:16:99:264,0,206
chr2	43871587	.	CTCCA	C	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:54:81,0,54
chr2	43931055	.	CT	C	843.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.16;ReadPosRankSum=-1.47;SOR=2.872	GT:AD:DP:GQ:PL	0/1:6,14:57:13:262,0,13
chr2	43934335	.	C	CAAAAA	132.85	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.92;QD=26.57;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:17:161,17,0
chr2	43934884	.	G	GT	75.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:103,12,0
chr2	43937723	.	C	CT	562.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.956;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0;QD=18.76;ReadPosRankSum=-2.348;SOR=0.887	GT:AD:DP:GQ:PL	0/1:7,23:62:58:497,0,58
chr2	43953263	.	CAA	C	194.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:223,21,0
chr2	44008745	.	TC	T	21.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.45;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,2:4:37:1|0:44008740_C_CT:50,0,37
chr2	44101214	.	CA	C	1051.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.64;MQRankSum=2.76;QD=12.67;ReadPosRankSum=0.167;SOR=0.393	GT:AD:DP:GQ:PL	0/1:49,34:83:99:1080,0,1707
chr2	44101537	.	A	AT	2907.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=189;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.72;ReadPosRankSum=0.711;SOR=0.917	GT:AD:DP:GQ:PGT:PID:PL	0/1:106,79:185:99:0|1:44101537_A_AT:2936,0,5617
chr2	44101649	.	G	GC,GCC	4118.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.07;QD=31.93;SOR=2.629	GT:AD:DP:GQ:PL	1/2:0,80,49:131:99:4147,1475,1100,2235,0,2055
chr2	44104610	.	ACT	A	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.026;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=-0.375;SOR=0.18	GT:AD:DP:GQ:PL	0/1:9,4:13:99:141,0,368
chr2	44123672	.	TC	T	1699.77	PASS	AC=2;AF=1;AN=2;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1728,129,0
chr2	44161854	.	G	GA	536.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.82;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=1.96;QD=8.13;ReadPosRankSum=0.682;SOR=0.886	GT:AD:DP:GQ:PL	0/1:39,27:71:99:565,0,737
chr2	44173087	.	CAATT	C	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=-0.409;SOR=0.223	GT:AD:DP:GQ:PL	0/1:9,4:13:99:141,0,518
chr2	44528267	.	GT	G	4853.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0;DP=304;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=2.35;QD=16.34;ReadPosRankSum=-0.81;SOR=0.565	GT:AD:DP:GQ:PL	0/1:141,156:297:99:4882,0,4293
chr2	44545234	.	GTTT	G,GTT	595.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=3.68;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=27.08;ReadPosRankSum=-0.744;SOR=0.814	GT:AD:DP:GQ:PL	1/2:1,10,11:28:99:624,237,381,302,0,250
chr2	44566504	.	TAG	T	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.278;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=2.78;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=2;QD=2.43;ReadPosRankSum=-2.124;SOR=0.357	GT:AD:DP:GQ:PL	0/1:46,9:58:99:162,0,1578
chr2	44569700	.	AAAT	A	922.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.46;ReadPosRankSum=0.954;SOR=0.343	GT:AD:DP:GQ:PL	0/1:19,24:43:99:951,0,705
chr2	44569739	.	T	TA	304.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.05;ReadPosRankSum=0.782;SOR=1.085	GT:AD:DP:GQ:PL	0/1:4,15:26:41:333,0,41
chr2	44571215	.	CAAT	C	264.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.02;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=62.65;MQRankSum=1.14;QD=22.06;ReadPosRankSum=1.07;SOR=3.056	GT:AD:DP:GQ:PL	0/1:4,8:12:99:293,0,194
chr2	44942331	.	CA	C	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.07;ReadPosRankSum=2.16;SOR=0.836	GT:AD:DP:GQ:PL	0/1:16,8:34:99:102,0,290
chr2	45645815	.	TA	T	88.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:117,15,0
chr2	45647211	.	CT	C	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.63;ReadPosRankSum=-0.189;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:62:62,0,74
chr2	45806963	.	TA	T	176.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.811;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=10.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.76;ReadPosRankSum=-0.693;SOR=0.041	GT:AD:DP:GQ:PL	0/1:44,20:64:99:205,0,908
chr2	45808963	.	CTT	C	1943.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.76;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=10.514;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.21;QD=22.87;ReadPosRankSum=-0.445;SOR=2.128	GT:AD:DP:GQ:PL	0/1:35,50:85:99:1972,0,1191
chr2	45809059	.	GTC	G	189.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.978;SOR=0.34	GT:AD:DP:GQ:PL	0/1:10,6:16:99:218,0,395
chr2	45813038	.	TA	T	76.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=19.01;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:104,12,0
chr2	46378419	.	TACAC	T,TAC	1466.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.21;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.13;MQRankSum=0.309;QD=33.34;ReadPosRankSum=0.481;SOR=2.262	GT:AD:DP:GQ:PL	1/2:2,27,15:49:99:1495,313,304,757,0,681
chr2	46583272	.	AC	A	110.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.81;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=52.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.09;ReadPosRankSum=1.22;SOR=2.004	GT:AD:DP:GQ:PL	0/1:41,12:65:99:139,0,1275
chr2	46844219	.	C	CG	420.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.48;SOR=2.67	GT:AD:DP:GQ:PL	1/1:0,12:12:36:449,36,0
chr2	47083030	.	ATG	A	478.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=10.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.74;ReadPosRankSum=0.239;SOR=4.003	GT:AD:DP:GQ:PL	0/1:4,23:27:16:507,0,16
chr2	47132834	.	T	TAAA	64.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.431;QD=10.8;ReadPosRankSum=0;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,4:6:31:93,0,31
chr2	47387989	.	CAAA	C	64.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-0.842;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:64:93,0,64
chr2	47394953	.	C	CTTTTTTTTTTTT	63.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.36;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	47604118	.	A	AT	521.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.09;QD=9.15;ReadPosRankSum=-0.784;SOR=0.432	GT:AD:DP:GQ:PL	0/1:30,27:57:99:550,0,539
chr2	47641559	.	TAAA	T	726.77	PASS	AC=2;AF=1;AN=2;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=31.5;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,9:28:59:604,59,0
chr2	47702052	.	T	TAGG	442.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.25;ReadPosRankSum=-0.709;SOR=1.885	GT:AD:DP:GQ:PL	0/1:11,12:23:99:471,0,503
chr2	48032322	.	C	CT	129.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.293;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=1.32;SOR=0.16	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,5:10:99:0|1:48032312_G_A:158,0,155
chr2	48032740	.	A	AT	99.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.348;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.53;ReadPosRankSum=-0.905;SOR=0.098	GT:AD:DP:GQ:PL	0/1:14,8:25:99:128,0,265
chr2	48032874	.	ACTAT	A	1035.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.927;QD=20.72;ReadPosRankSum=-1.77;SOR=0.32	GT:AD:DP:GQ:PL	0/1:22,28:50:99:1064,0,839
chr2	48033890	.	CT	C	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.08;QD=2.71;ReadPosRankSum=0.21;SOR=0.59	GT:AD:DP:GQ:PL	0/1:34,12:65:99:153,0,650
chr2	48040904	.	G	GA	2702.77	PASS	AC=2;AF=1;AN=2;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=28.15;SOR=3.779	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2731,291,0
chr2	48059471	.	AAAAT	A	2364.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.52;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=10.66;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=2.17;QD=17.26;ReadPosRankSum=-0.387;SOR=1.586	GT:AD:DP:GQ:PL	0/1:73,64:137:99:2393,0,3959
chr2	48667951	.	C	CGCGGCG	248.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.431;QD=27.64;ReadPosRankSum=-0.732;SOR=0.804	GT:AD:DP:GQ:PL	0/1:3,6:9:99:277,0,199
chr2	48734331	.	CT	C	116.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=7.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.17;ReadPosRankSum=-0.626;SOR=2.861	GT:AD:DP:GQ:PL	0/1:18,10:40:99:145,0,394
chr2	48847918	.	G	GAATA	228.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=0.549;QD=19.06;ReadPosRankSum=1.28;SOR=1.022	GT:AD:DP:GQ:PL	0/1:5,7:12:99:257,0,217
chr2	48925986	.	AT	A	488.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.8;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=0;QD=22.22;ReadPosRankSum=-0.401;SOR=5.136	GT:AD:DP:GQ:PL	1/1:1,21:26:51:499,51,0
chr2	48941072	.	CA	C	2404.77	PASS	AC=2;AF=1;AN=2;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=31.07;SOR=2.265	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2433,184,0
chr2	50463715	.	CAA	C	34.96	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	1/1:1,2:3:4:61,4,0
chr2	50693504	.	AAC	A	7852.77	PASS	AC=2;AF=1;AN=2;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=27.1;SOR=2.499	GT:AD:DP:GQ:PL	1/1:0,176:176:99:7881,530,0
chr2	50699197	.	C	CA	140.03	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:12:1|1:50699192_A_G:168,12,0
chr2	50758309	.	C	CA	2214.77	PASS	AC=2;AF=1;AN=2;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=32.1;SOR=4.143	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2243,219,0
chr2	52929945	.	GC	G	99.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:127,12,0
chr2	54023247	.	GT	G	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.735;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.42;ReadPosRankSum=0.84;SOR=0.551	GT:AD:DP:GQ:PL	0/1:15,8:23:99:107,0,301
chr2	54131014	.	A	AT	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,116
chr2	54134165	.	A	AAT	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.18;ReadPosRankSum=-0.253;SOR=0.976	GT:AD:DP:GQ:PL	0/1:8,2:10:60:60,0,316
chr2	54134173	.	C	CTTAA	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.86;ReadPosRankSum=-1.085;SOR=1.179	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,352
chr2	54176585	.	CTT	C	23.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.95;ReadPosRankSum=-1.383;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:42:52,0,42
chr2	55071101	.	T	TTGTGTGTG	463.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.948;QD=18.55;ReadPosRankSum=0.362;SOR=0.495	GT:AD:DP:GQ:PL	0/1:15,10:34:99:492,0,1042
chr2	55181022	.	TA	T	180.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.92;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0.03;QD=5.02;ReadPosRankSum=1.62;SOR=0.963	GT:AD:DP:GQ:PL	0/1:21,15:48:99:209,0,431
chr2	55187297	.	A	AG	1046.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.751	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1075,99,0
chr2	55200038	.	CAGAT	C	366.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.19;QD=35.23;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:27:395,27,0
chr2	55436488	.	GA	G	395.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=5.295;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.23;QD=7.47;ReadPosRankSum=0.217;SOR=0.099	GT:AD:DP:GQ:PL	0/1:31,22:53:99:424,0,689
chr2	55473386	.	CAT	C	1736.77	PASS	AC=2;AF=1;AN=2;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.75;QD=32.82;SOR=7.428	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1765,120,0
chr2	55480925	.	TG	T	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:55480925_TG_T:135,9,0
chr2	55480930	.	GACA	G	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:55480925_TG_T:135,9,0
chr2	55480934	.	GAGTGAGACTCTGTCTCAAAAAGAAAAAA	G	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:55480925_TG_T:135,9,0
chr2	55481486	.	T	TATA	241.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.67;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr2	55489677	.	C	CT	31.74	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.253;QD=6.35;ReadPosRankSum=1.28;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:6:59,0,6
chr2	55490745	.	C	CA	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=10.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.29;ReadPosRankSum=1.42;SOR=0.033	GT:AD:DP:GQ:PL	0/1:29,12:53:99:122,0,568
chr2	55519152	.	CCT	C	139.03	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:12:1|1:55519148_C_A:167,12,0
chr2	55523308	.	C	CAA	748.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.545;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=8.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.74;ReadPosRankSum=0.455;SOR=3.407	GT:AD:DP:GQ:PL	0/1:4,24:34:33:740,0,33
chr2	55528548	.	CAACTAGAAACTGG	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	55539947	.	TATATA	T	20	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr2	55549523	.	G	GA	145.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.31;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:174,18,0
chr2	55559651	.	CA	C	285.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.699;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.84;ReadPosRankSum=0.042;SOR=0.75	GT:AD:DP:GQ:PL	0/1:40,19:82:99:314,0,891
chr2	55760842	.	A	AT	99.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	55764754	.	AATATGAATAC	A	1457.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.67;SOR=3.193	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1486,100,0
chr2	55777082	.	ATTC	A	2003.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=3.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.89;ReadPosRankSum=0.608;SOR=0.487	GT:AD:DP:GQ:PL	0/1:59,53:112:99:2032,0,2550
chr2	55806644	.	A	AC	167.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=27.97;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:196,18,0
chr2	55863360	.	T	TA	743.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.147;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;MQRankSum=0.213;QD=22.54;ReadPosRankSum=-0.034;SOR=1.714	GT:AD:DP:GQ:PL	1/1:2,31:37:65:772,65,0
chr2	55874657	.	AT	A	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.58;ReadPosRankSum=-1.537;SOR=0.184	GT:AD:DP:GQ:PL	0/1:9,6:18:67:67,0,193
chr2	55883509	.	T	TA	273.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.28;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.44;QD=3.38;ReadPosRankSum=-0.33;SOR=0.61	GT:AD:DP:GQ:PL	0/1:60,21:90:99:302,0,1134
chr2	55914573	.	C	CA	148.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.26;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,7:7:21:177,21,0
chr2	56412263	.	C	CG	86.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.37;ReadPosRankSum=-1.282;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,4:5:18:115,0,18
chr2	56569881	.	A	AT	142.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=-1.94;SOR=0.804	GT:AD:DP:GQ:PL	0/1:8,9:17:99:171,0,141
chr2	56611543	.	C	CAAG	818.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.215;SOR=0.44	GT:AD:DP:GQ:PL	0/1:40,24:64:99:847,0,1699
chr2	60773687	.	AAC	A	50.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	60780421	.	GGGC	G	165.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.532;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.25;ReadPosRankSum=2.31;SOR=1.45	GT:AD:DP:GQ:PL	0/1:43,8:51:99:194,0,1699
chr2	61009699	.	GA	G	22.58	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=11.29;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	61022377	.	TTATTATC	T	63.56	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	61128285	.	CTT	C	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.75;ReadPosRankSum=-1.71;SOR=0.892	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,5:9:44:1|0:61128283_CT_C:62,0,44
chr2	61308569	.	A	AT	135.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.49;QD=2.38;ReadPosRankSum=0.903;SOR=0.304	GT:AD:DP:GQ:PL	0/1:42,15:81:99:164,0,865
chr2	61325192	.	TTA	T	79.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.56;QD=26.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:106,9,0
chr2	61404452	.	G	GCGCGTCCC	152.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	61413037	.	TATTA	T	340.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.05;SOR=0.275	GT:AD:DP:GQ:PL	0/1:17,10:27:99:369,0,684
chr2	61413092	.	AATAAC	A	211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.06;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.18;ReadPosRankSum=-1.133;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,150
chr2	61447286	.	TAAAAAAAAAAAA	T	315.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,8:8:24:344,24,0
chr2	61486689	.	AT	A	80.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.18;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,6:7:5:108,0,5
chr2	61492829	.	TA	T	149.31	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=16.59;ReadPosRankSum=0.589;SOR=1.739	GT:AD:DP:GQ:PL	1/1:1,8:9:1:175,1,0
chr2	61510709	.	TGAGTGA	T	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=-0.319;SOR=0.916	GT:AD:DP:GQ:PL	0/1:1,3:4:64:123,0,64
chr2	61528299	.	T	TA	868.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=4.53;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.44;QD=10.86;ReadPosRankSum=-1.521;SOR=0.305	GT:AD:DP:GQ:PL	0/1:40,40:80:99:897,0,809
chr2	61538602	.	G	GAAAAGAGAAAGAAAAAGAAAA	3247.77	PASS	AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.43;QD=31.35;SOR=7.378	GT:AD:DP:GQ:PL	1/1:0,39:39:99:3276,226,0
chr2	61570886	.	AAAGT	A	1301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.763;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.12;QD=16.91;ReadPosRankSum=0.972;SOR=0.531	GT:AD:DP:GQ:PL	0/1:42,35:77:99:1330,0,2368
chr2	61576181	.	AAAG	A	82.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.703;SOR=2.303	GT:AD:DP:GQ:PL	0/1:5,3:8:99:111,0,240
chr2	61607736	.	T	TC	41.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
chr2	61713209	.	GGAAAATC	G	145.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=0.869;QD=11.21;ReadPosRankSum=-0.211;SOR=2.03	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,5:13:99:0|1:61713209_GGAAAATC_G:174,0,1269
chr2	61715159	.	GACT	G	211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.217;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.18;ReadPosRankSum=-0.854;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,195
chr2	61722519	.	G	GA	120.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.47;ReadPosRankSum=1.94;SOR=0.184	GT:AD:DP:GQ:PL	0/1:19,8:27:99:149,0,447
chr2	61753841	.	A	AT	15.68	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=7.84;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:42,6,0
chr2	62053878	.	G	GA	139.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr2	62063093	.	TA	T	399.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.728;SOR=1.047	GT:AD:DP:GQ:PL	0/1:9,25:44:99:428,0,152
chr2	62063341	.	TG	T	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.53;ReadPosRankSum=0.231;SOR=1.609	GT:AD:DP:GQ:PL	0/1:5,4:9:96:96,0,170
chr2	62066018	.	TA	T	129.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.64;MQRankSum=-0.21;QD=21.63;ReadPosRankSum=-0.253;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,5:6:60:0|1:62066018_TA_T:158,0,60
chr2	62066020	.	TTTATTTA	T	129.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.21;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.64;MQRankSum=-0.21;QD=21.63;ReadPosRankSum=-0.431;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,5:6:60:0|1:62066018_TA_T:158,0,60
chr2	62066417	.	ATATAT	A	289.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.74;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.7;ReadPosRankSum=1.47;SOR=0.976	GT:AD:DP:GQ:PL	0/1:6,8:14:99:318,0,381
chr2	62104660	.	TA	T	347.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=1.49;SOR=1.284	GT:AD:DP:GQ:PL	0/1:14,24:44:99:376,0,285
chr2	62107376	.	T	TC	1384.77	PASS	AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=3.321	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1413,108,0
chr2	62110551	.	CAA	C	54.28	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.09;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:8:81,8,0
chr2	62112221	.	G	GA	1378.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=1.11;QD=14.07;ReadPosRankSum=-0.246;SOR=0.765	GT:AD:DP:GQ:PL	0/1:55,43:101:99:1407,0,2074
chr2	62112246	.	C	CT	511.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=-0.371;SOR=0.616	GT:AD:DP:GQ:PL	0/1:30,27:68:99:540,0,521
chr2	62196080	.	C	CT	85.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.15;ReadPosRankSum=-1.087;SOR=0.061	GT:AD:DP:GQ:PL	0/1:5,7:18:92:92,0,106
chr2	62729747	.	G	GA	1204.77	PASS	AC=2;AF=1;AN=2;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.69;QD=28.68;SOR=1.259	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1233,132,0
chr2	62998795	.	AAT	A	34.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.19;QD=17.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr2	63457004	.	ATGC	A	250.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.5;MQ=59.37;MQRankSum=0.812;QD=20.9;ReadPosRankSum=-2.076;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,7:12:99:279,0,220
chr2	63820546	.	AT	A	30.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.65;MQRankSum=0.319;QD=7.75;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:14:59,0,14
chr2	64069277	.	G	GA	421.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=4.273;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.882;QD=6.49;ReadPosRankSum=-1.205;SOR=1.214	GT:AD:DP:GQ:PL	0/1:40,25:94:99:450,0,753
chr2	64084434	.	CA	C	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.22;ReadPosRankSum=-0.816;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,4:8:62:62,0,73
chr2	64118158	.	TA	T	82.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.45;ReadPosRankSum=0.368;SOR=0.247	GT:AD:DP:GQ:PL	0/1:16,8:24:99:111,0,313
chr2	64139831	.	TAA	T	18.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.69;ReadPosRankSum=-1.068;SOR=0.027	GT:AD:DP:GQ:PL	0/1:5,2:7:47:47,0,204
chr2	64331815	.	CT	C	375.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.22;ReadPosRankSum=0.625;SOR=0.582	GT:AD:DP:GQ:PL	0/1:47,25:102:99:404,0,917
chr2	64683062	.	ATT	A	36.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
chr2	64795031	.	CA	C	105.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0;QD=15.11;ReadPosRankSum=1.07;SOR=1.022	GT:AD:DP:GQ:PL	0/1:3,4:7:99:134,0,100
chr2	64799937	.	TAA	T	72.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.734;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=2.63;SOR=0.074	GT:AD:DP:GQ:PL	0/1:5,4:11:99:101,0,123
chr2	64819249	.	T	TAAA	458.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.95;ReadPosRankSum=-1.647;SOR=1.179	GT:AD:DP:GQ:PL	0/1:13,10:55:99:487,0,706
chr2	65325264	.	G	GA	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.44;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.16;ReadPosRankSum=0.21;SOR=0.275	GT:AD:DP:GQ:PL	0/1:17,6:23:78:78,0,317
chr2	65473930	.	AAAATTTTC	A	490.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.694;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.31;ReadPosRankSum=2.34;SOR=1.127	GT:AD:DP:GQ:PL	0/1:9,13:22:99:519,0,681
chr2	65478438	.	TA	T	45.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:72,9,0
chr2	65480681	.	TAAAAG	T	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=0.566;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,277
chr2	65488238	.	T	TC	94.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=23.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:122,12,0
chr2	65495573	.	A	AC	286.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=2.584	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,7:7:21:1|1:65495570_A_C:315,21,0
chr2	66667181	.	ACG	A	51.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.71;ReadPosRankSum=1.78;SOR=0.027	GT:AD:DP:GQ:PL	0/1:8,3:11:80:80,0,259
chr2	68269960	.	CGGGGGG	C	1981.77	PASS	AC=2;AF=1;AN=2;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=25.8;SOR=4.047	GT:AD:DP:GQ:PL	1/1:0,40:49:99:2010,150,0
chr2	68274080	.	CT	C	46.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:73,9,0
chr2	68389276	.	G	GA	353.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.59;QD=7.69;ReadPosRankSum=-2.836;SOR=0.534	GT:AD:DP:GQ:PL	0/1:25,21:46:99:382,0,449
chr2	68389481	.	CTT	C	4922.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.902;ClippingRankSum=0;DP=260;ExcessHet=3.0103;FS=0.46;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=2.99;QD=19.3;ReadPosRankSum=-0.849;SOR=0.637	GT:AD:DP:GQ:PL	0/1:125,130:255:99:4951,0,5422
chr2	68400708	.	A	ATT	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=0.189;SOR=2.093	GT:AD:DP:GQ:PL	0/1:3,3:6:69:71,0,69
chr2	68402153	.	TA	T	71.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.49;MQRankSum=0;QD=17.95;ReadPosRankSum=0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:25:100,0,25
chr2	68413437	.	G	GTTAA	211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.18;ReadPosRankSum=0;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,221
chr2	68444171	.	C	CACGCAG	466.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.71;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=2.35;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0;QD=29.17;ReadPosRankSum=-0.286;SOR=1.802	GT:AD:DP:GQ:PL	0/1:10,6:19:99:495,0,477
chr2	68511506	.	GA	G	479.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.27;ReadPosRankSum=-0.018;SOR=0.53	GT:AD:DP:GQ:PL	0/1:35,31:69:99:508,0,718
chr2	69043264	.	CT	C	1877.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.553;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=1.7;SOR=0.415	GT:AD:DP:GQ:PL	0/1:55,79:141:99:1906,0,1079
chr2	69300088	.	GGAC	G	952.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.16;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.75;SOR=0.73	GT:AD:DP:GQ:PGT:PID:PL	0/1:56,26:82:99:0|1:69300087_G_C:981,0,6348
chr2	69330562	.	A	AC	44.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr2	69331070	.	A	ATTTT	188.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.16;ReadPosRankSum=0.807;SOR=1.802	GT:AD:DP:GQ:PL	0/1:5,6:11:99:217,0,164
chr2	69420591	.	T	TCACA	654.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.1;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.83;MQRankSum=-0.416;QD=31.97;ReadPosRankSum=1.11;SOR=1.061	GT:AD:DP:GQ:PL	0/1:8,10:32:99:683,0,585
chr2	69688727	.	A	AT	29.29	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.319;QD=7.32;ReadPosRankSum=0.674;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:10:57,0,10
chr2	69704336	.	T	TA	172.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:201,18,0
chr2	69741753	.	CTGT	C	3694.77	PASS	AC=2;AF=1;AN=2;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.87;QD=28.54;SOR=1.203	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3723,282,0
chr2	70068258	.	CT	C	347.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.991;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=1.65;QD=8.48;ReadPosRankSum=0.605;SOR=0.919	GT:AD:DP:GQ:PL	0/1:23,18:41:99:376,0,550
chr2	70120909	.	GA	G	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-1.408;SOR=0.569	GT:AD:DP:GQ:PL	0/1:7,6:13:99:175,0,194
chr2	70131320	.	G	GT	380.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.39;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=7.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=1.82;SOR=2.833	GT:AD:DP:GQ:PL	0/1:19,19:42:99:409,0,322
chr2	70131663	.	GCGTCAAC	G	170.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.17;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.524;QD=11.38;ReadPosRankSum=0.115;SOR=0.33	GT:AD:DP:GQ:PL	0/1:9,6:15:99:199,0,703
chr2	70164580	.	C	CAGGG	623.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.9;ReadPosRankSum=-0.126;SOR=0.941	GT:AD:DP:GQ:PL	0/1:17,16:33:99:652,0,891
chr2	70486475	.	G	GT	861.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.774;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.555;SOR=1.244	GT:AD:DP:GQ:PL	0/1:38,40:78:99:890,0,739
chr2	70502811	.	T	TTCTG	1419.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.57;QD=17.11;ReadPosRankSum=-2.213;SOR=1.006	GT:AD:DP:GQ:PL	0/1:45,38:83:99:1448,0,2610
chr2	70509062	.	C	CT	13.95	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.49;ReadPosRankSum=0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:36:42,0,36
chr2	70515067	.	G	GTT	781.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.72;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,18:18:54:810,54,0
chr2	70901788	.	GGT	G	3817.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0;DP=276;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=2.78;QD=14.14;ReadPosRankSum=-1.06;SOR=0.744	GT:AD:DP:GQ:PGT:PID:PL	0/1:163,107:270:99:0|1:70901785_A_G:3846,0,6667
chr2	71004413	.	C	CA	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.776;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=10.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-0.256;SOR=0.046	GT:AD:DP:GQ:PL	0/1:9,13:45:99:287,0,180
chr2	71036758	.	TCA	T	945.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.91;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,24:24:72:974,72,0
chr2	71062833	.	G	GC	4785.77	PASS	AC=2;AF=1;AN=2;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=34.75;SOR=0.724	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4814,391,0
chr2	71360735	.	T	TTCC	820.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-3.28;QD=12.82;ReadPosRankSum=0.777;SOR=0.542	GT:AD:DP:GQ:PGT:PID:PL	0/1:40,24:64:99:0|1:71360723_A_G:849,0,2493
chr2	71590577	.	AAT	A	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:37:81,0,37
chr2	71592438	.	A	AT	64.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0;SOR=3.258	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,4:6:34:0|1:71592438_A_AT:93,0,34
chr2	71645854	.	TGTA	T	469.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.04;QD=18.79;ReadPosRankSum=-0.925;SOR=0.09	GT:AD:DP:GQ:PL	0/1:12,13:25:99:498,0,460
chr2	71661855	.	C	CA	960.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.987;QD=12.81;ReadPosRankSum=-1.056;SOR=0.793	GT:AD:DP:GQ:PL	0/1:36,39:75:99:989,0,905
chr2	71708825	.	T	TATCC	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=-2.025;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,180
chr2	72692272	.	A	AAG	8310.77	PASS	AC=2;AF=1;AN=2;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=32.46;SOR=2.028	GT:AD:DP:GQ:PL	1/1:0,180:180:99:8339,568,0
chr2	72719793	.	G	GT	54.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.06;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:81,9,0
chr2	72741728	.	TAA	T	273.8	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:302,21,0
chr2	72741732	.	TAA	T	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.56;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.86;SOR=0.283	GT:AD:DP:GQ:PL	0/1:6,3:9:72:72,0,170
chr2	72742083	.	GACAC	G,GAC	337.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=25.98;ReadPosRankSum=-1.342;SOR=2.303	GT:AD:DP:GQ:PL	1/2:1,4,8:13:83:366,217,256,85,0,83
chr2	72958022	.	T	TAAG	511.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,11:11:36:540,36,0
chr2	73144431	.	A	AG	134.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.51;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr2	73448560	.	CT	C	22.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.652;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.26;ReadPosRankSum=1.58;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:34:51,0,34
chr2	73460293	.	AGGGCC	A	88.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=58.71;MQRankSum=0;QD=14.79;ReadPosRankSum=-0.598;SOR=0.838	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,199
chr2	73467676	.	GAA	G	3133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0;DP=183;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.82;QD=18.11;ReadPosRankSum=-0.909;SOR=0.753	GT:AD:DP:GQ:PL	0/1:90,83:173:99:3162,0,3293
chr2	73471193	.	GT	G	183.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.23;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=6.203;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.28;QD=4.48;ReadPosRankSum=-1.895;SOR=0.193	GT:AD:DP:GQ:PL	0/1:24,17:55:99:212,0,516
chr2	73477317	.	CCT	C	730.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=0.765;QD=26.1;ReadPosRankSum=0.123;SOR=1.609	GT:AD:DP:GQ:PL	0/1:9,19:28:99:759,0,369
chr2	73675019	.	CT	C	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.38;QD=5.76;ReadPosRankSum=-0.585;SOR=0.307	GT:AD:DP:GQ:PL	0/1:19,11:30:99:201,0,456
chr2	73675227	.	T	TCTC	4508.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.425;ClippingRankSum=0;DP=278;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.95;ReadPosRankSum=0.759;SOR=0.653	GT:AD:DP:GQ:PL	0/1:148,118:266:99:4537,0,6455
chr2	73682211	.	G	GTGTTGCAATTGTTGACAA	1025.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=-2.444;QD=14.25;ReadPosRankSum=-3.261;SOR=0.231	GT:AD:DP:GQ:PGT:PID:PL	0/1:54,18:72:99:0|1:73682211_G_GTGTTGCAATTGTTGACAA:1054,0,12066
chr2	73682216	.	T	TCA	1212.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=3.798;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-1.994;QD=13.48;ReadPosRankSum=-4.339;SOR=1.536	GT:AD:DP:GQ:PGT:PID:PL	0/1:60,30:90:99:0|1:73682211_G_GTGTTGCAATTGTTGACAA:1241,0,12609
chr2	73682219	.	T	TTTG	1959.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=3.813;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-1.92;QD=20.2;ReadPosRankSum=-4.511;SOR=1.65	GT:AD:DP:GQ:PGT:PID:PL	0/1:63,34:97:99:0|1:73682211_G_GTGTTGCAATTGTTGACAA:1988,0,12627
chr2	73682220	.	C	CAATTGTTGACAAATTATGT	1958.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.33;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=3.81;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-1.892;QD=19.99;ReadPosRankSum=-4.643;SOR=1.698	GT:AD:DP:GQ:PGT:PID:PL	0/1:63,35:98:99:0|1:73682211_G_GTGTTGCAATTGTTGACAA:1987,0,12629
chr2	73786441	.	C	CTA	48.56	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	73956940	.	CT	C	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.92;ReadPosRankSum=-0.372;SOR=1.061	GT:AD:DP:GQ:PL	0/1:8,8:19:91:91,0,166
chr2	73957880	.	G	GA	330.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.578;SOR=0.627	GT:AD:DP:GQ:PL	0/1:10,17:27:99:359,0,159
chr2	73993436	.	CA	C	227.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=1.08;QD=9.49;ReadPosRankSum=0.051;SOR=0.593	GT:AD:DP:GQ:PL	0/1:9,15:27:99:256,0,151
chr2	74128664	.	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC	T	114.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.96;ReadPosRankSum=0.308;SOR=0.399	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,7:29:99:0|1:74128664_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC_T:143,0,2151
chr2	74128666	.	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC	T	395.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.13;ReadPosRankSum=2.91;SOR=0.859	GT:AD:DP:GQ:PGT:PID:PL	0/1:13,15:28:99:1|0:74128664_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC_T:424,0,1720
chr2	74142164	.	GA	G	87.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.936;SOR=0.941	GT:AD:DP:GQ:PL	0/1:4,5:9:94:116,0,94
chr2	74143501	.	GAA	G	23.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.95;ReadPosRankSum=1.38;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:26:52,0,26
chr2	74362459	.	T	TAGC	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	74439071	.	C	CT	20.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-1.068;QD=2.97;ReadPosRankSum=0.328;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:38:49,0,38
chr2	74481944	.	AT	A	15.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.27;ReadPosRankSum=0.652;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,3:7:44:44,0,62
chr2	74596168	.	G	GA	705.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.62;QD=12.6;ReadPosRankSum=-1.725;SOR=0.88	GT:AD:DP:GQ:PL	0/1:31,25:56:99:734,0,953
chr2	74717123	.	G	GCCTCC	154.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-1.05;SOR=1.329	GT:AD:DP:GQ:PL	0/1:9,4:13:99:183,0,547
chr2	74751022	.	G	GT	1379.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DP=155;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-0.896;SOR=1.108	GT:AD:DP:GQ:PL	0/1:76,67:148:99:1408,0,1490
chr2	74756111	.	G	GA	516.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=3.615;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0;QD=9.94;ReadPosRankSum=1.8;SOR=0.568	GT:AD:DP:GQ:PL	0/1:27,25:59:99:545,0,468
chr2	74867590	.	ATT	A	25.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:24:54,0,24
chr2	75061889	.	AAAAGTTTGGGCAGCCGGGACACTCCTGGGCGCCAGGAGCCACGTCCGCTAAGCACAGCCGGCGAGTGCGCGCGGGCGGGG	A	587.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.353;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=3.399;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.79;ReadPosRankSum=0.911;SOR=0.148	GT:AD:DP:GQ:PGT:PID:PL	0/1:19,16:35:99:0|1:75061873_C_G:616,0,733
chr2	75882156	.	CT	C	98.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.81;ReadPosRankSum=0.733;SOR=1.911	GT:AD:DP:GQ:PL	0/1:7,10:17:82:127,0,82
chr2	77745255	.	TAA	T	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.589;SOR=0.892	GT:AD:DP:GQ:PL	0/1:4,5:9:58:122,0,58
chr2	77748963	.	CAA	C,CA	1598.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.41;MQRankSum=0.579;QD=26.94;ReadPosRankSum=-0.245;SOR=4.407	GT:AD:DP:GQ:PL	1/2:3,8,24:38:74:1627,495,467,176,0,74
chr2	79348129	.	GA	G	1029.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0;DP=179;ExcessHet=3.0103;FS=5.208;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.792;QD=8.73;ReadPosRankSum=-0.376;SOR=1.416	GT:AD:DP:GQ:PL	0/1:55,63:146:99:1058,0,1114
chr2	79914570	.	C	CT	561.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.794;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0;QD=9.36;ReadPosRankSum=0.095;SOR=0.812	GT:AD:DP:GQ:PL	0/1:33,27:85:99:590,0,635
chr2	80101515	.	CA	C	446.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-0.937;SOR=1.713	GT:AD:DP:GQ:PL	0/1:20,26:51:99:475,0,394
chr2	84676886	.	TAA	T	88.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.78;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:117,15,0
chr2	84755996	.	A	AT	5611.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DP=318;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.325;QD=22.09;ReadPosRankSum=0.606;SOR=0.963	GT:AD:DP:GQ:PL	1/1:26,228:291:99:5637,239,0
chr2	84821407	.	G	GA	102.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.06;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:84821407_G_GA:129,9,0
chr2	84821408	.	G	GCAGGAAGTATTCTTGTAAGCCAGGCTTCTCAGGTC	102.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.06;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:84821407_G_GA:129,9,0
chr2	84832476	.	CA	C	74.31	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.28;MQRankSum=-0.157;QD=9.29;ReadPosRankSum=0.887;SOR=1.402	GT:AD:DP:GQ:PL	1/1:1,7:8:1:100,1,0
chr2	84930815	.	G	GT	37.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.3;ReadPosRankSum=-0.842;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,4:6:26:66,0,26
chr2	85108252	.	G	GC	265.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=33.22;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
chr2	85360828	.	GGGC	G	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	85510394	.	C	CG	286.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.24;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr2	85589223	.	TA	T	126.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.351;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.3;ReadPosRankSum=1.57;SOR=0.549	GT:AD:DP:GQ:PL	0/1:41,14:69:99:155,0,945
chr2	85661740	.	TA	T	82.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.94;ReadPosRankSum=1.35;SOR=0.223	GT:AD:DP:GQ:PL	0/1:14,7:30:99:111,0,271
chr2	85781577	.	T	TTTGTTGTTG	193.9	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.97;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:222,15,0
chr2	85783150	.	GA	G	381.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=25.45;SOR=4.047	GT:AD:DP:GQ:PL	1/1:0,15:15:45:410,45,0
chr2	85788401	.	GA	G	203.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.97;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:232,18,0
chr2	85808594	.	CA	C	152.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.953;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=1.14;SOR=1.609	GT:AD:DP:GQ:PL	0/1:6,9:19:88:181,0,88
chr2	85819923	.	C	CAAAAAAAAAAAAAAAAAA	90.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.39;QD=30.06;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	85823167	.	TG	T	76.18	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr2	85843801	.	CTT	C	68.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr2	85848747	.	CT	C	948.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.74;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=0.735;QD=16.35;ReadPosRankSum=1.18;SOR=1.416	GT:AD:DP:GQ:PL	0/1:10,48:71:21:975,0,21
chr2	85921734	.	G	GC	291.78	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=1.402	GT:AD:DP:GQ:PL	1/1:0,9:9:27:320,27,0
chr2	85922121	.	T	TA	2325.77	PASS	AC=2;AF=1;AN=2;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=28.02;SOR=1.45	GT:AD:DP:GQ:PL	1/1:0,83:85:99:2354,256,0
chr2	86304932	.	GCGCACACACACACA	G,GCA	849.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=63.82;QD=32.88;SOR=3.611	GT:AD:DP:GQ:PL	1/2:0,8,11:19:99:878,295,254,232,0,164
chr2	86359745	.	GTT	G	33.56	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=16.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:60,6,0
chr2	86364706	.	TG	T	3100.77	PASS	AC=2;AF=1;AN=2;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.44;QD=29.35;SOR=2.967	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3129,265,0
chr2	86372188	.	C	CAGGCAGT	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	86380427	.	TACAC	T	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	86385682	.	TC	T	520.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.28;ReadPosRankSum=0.519;SOR=1.209	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,27:32:19:0|1:86385668_T_C:549,0,19
chr2	86701786	.	C	CA	74.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.67;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=-1.531;QD=3.74;ReadPosRankSum=1.55;SOR=0.283	GT:AD:DP:GQ:PL	0/1:13,7:20:99:103,0,197
chr2	86701824	.	T	TTGTG,TTTGTG	1402.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.23;MQRankSum=0;QD=29.71;ReadPosRankSum=1.8;SOR=2.082	GT:AD:DP:GQ:PL	1/2:4,19,13:59:99:1431,221,398,502,0,632
chr2	86713156	.	C	CA	168.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.78;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	86790525	.	AG	A	1180.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.7;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=-0.367;SOR=1.14	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1209,0,1344
chr2	86992337	.	T	TAA	4970.77	PASS	AC=2;AF=1;AN=2;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.8;SOR=2.792	GT:AD:DP:GQ:PL	1/1:0,111:111:99:4999,340,0
chr2	86998659	.	CTT	C,CT	2116.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0;DP=191;ExcessHet=3.0103;FS=8.161;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.28;MQRankSum=1.07;QD=12.83;ReadPosRankSum=-0.756;SOR=0.27	GT:AD:DP:GQ:PL	1/2:32,41,92:176:99:2145,1066,2054,204,0,485
chr2	87015368	.	G	GT	44.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=11.01;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:72,12,0
chr2	87015633	.	T	TGA	3241.77	PASS	AC=2;AF=1;AN=2;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=1.308	GT:AD:DP:GQ:PL	1/1:0,72:72:99:3270,228,0
chr2	87016922	.	G	GCACCCC	244.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.26;MQRankSum=1.2;QD=17.48;ReadPosRankSum=-0.247;SOR=0.283	GT:AD:DP:GQ:PL	0/1:7,7:14:99:273,0,489
chr2	87049358	.	GA	G	155.28	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.547;SOR=1.292	GT:AD:DP:GQ:PL	0/1:3,10:16:60:174,0,60
chr2	87060071	.	TCCTCC	T	43.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=64.19;MQRankSum=0.431;QD=14.59;ReadPosRankSum=0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:26:72,0,26
chr2	87092750	.	C	CAA	103.9	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.32;QD=20.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:132,15,0
chr2	87205188	.	CTTT	C	125.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.01;MQRankSum=-4.114;QD=4.34;ReadPosRankSum=1.13;SOR=0.273	GT:AD:DP:GQ:PL	0/1:24,5:37:99:154,0,996
chr2	88328163	.	C	CTT	522.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=0.136;QD=34.85;ReadPosRankSum=-0.539;SOR=3.912	GT:AD:DP:GQ:PL	0/1:1,14:29:8:510,0,8
chr2	88383629	.	CA	C	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.48;ReadPosRankSum=0.272;SOR=0.061	GT:AD:DP:GQ:PL	0/1:5,3:8:48:48,0,86
chr2	88409719	.	A	AGT	21.85	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.46;ReadPosRankSum=1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:20:50,0,20
chr2	88751751	.	A	AG	43.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.19;QD=21.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
chr2	88926729	.	CCAG	C	286.8	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.85;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr2	89159867	.	C	CT	37.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=0.674;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:12:65,0,12
chr2	89292476	.	T	TTGTGCCCTGGGAACATGCAAA	5640.77	PASS	AC=2;AF=1;AN=2;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.66;QD=30.77;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,124:124:99:5669,382,0
chr2	89399858	.	C	CAA	411.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.5;QD=26.15;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,10:10:32:440,32,0
chr2	95816017	.	T	TA	949.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DP=164;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.562;QD=12.02;ReadPosRankSum=1.1;SOR=0.988	GT:AD:DP:GQ:PL	0/1:27,52:119:99:978,0,329
chr2	95830737	.	C	CA	1486.77	PASS	AC=2;AF=1;AN=2;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=28.59;SOR=2.79	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1515,156,0
chr2	95843080	.	TC	T	71.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:98,9,0
chr2	95847040	.	TGCG	T	6451.77	PASS	AC=2;AF=1;AN=2;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=29.97;SOR=1.486	GT:AD:DP:GQ:PL	1/1:0,149:149:99:6480,449,0
chr2	95944902	.	A	AC	363.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.07;SOR=2.494	GT:AD:DP:GQ:PL	1/1:0,11:11:33:392,33,0
chr2	96049917	.	T	TAC	89.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-1.668;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,5:7:37:118,0,37
chr2	96265407	.	C	CT	161.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.14;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.5;MQ=34.82;MQRankSum=-0.818;QD=7.35;ReadPosRankSum=0.669;SOR=0.098	GT:AD:DP:GQ:PL	0/1:13,9:22:99:190,0,281
chr2	96517783	.	CTAA	C	1555.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DP=258;ExcessHet=3.0103;FS=19.522;MLEAC=1;MLEAF=0.5;MQ=49.6;MQRankSum=-10.57;QD=6.15;ReadPosRankSum=-0.664;SOR=0.116	GT:AD:DP:GQ:PL	0/1:199,54:253:99:1584,0,8113
chr2	96525717	.	A	AT	1138.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DP=201;ExcessHet=3.0103;FS=41.65;MLEAC=1;MLEAF=0.5;MQ=55.29;MQRankSum=-6.406;QD=5.81;ReadPosRankSum=-2.725;SOR=3.499	GT:AD:DP:GQ:PGT:PID:PL	0/1:157,39:196:99:0|1:96525717_A_AT:1167,0,6455
chr2	96593048	.	G	GA	6315.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0;DP=584;ExcessHet=3.0103;FS=9.163;MLEAC=1;MLEAF=0.5;MQ=51.9;MQRankSum=-14.23;QD=11.16;ReadPosRankSum=7.27;SOR=0.328	GT:AD:DP:GQ:PGT:PID:PL	0/1:389,177:566:99:0|1:96593048_G_GA:6344,0,15414
chr2	96593057	.	TAATC	T	6296.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0;DP=583;ExcessHet=3.0103;FS=2.723;MLEAC=1;MLEAF=0.5;MQ=52.62;MQRankSum=-15.9;QD=10.91;ReadPosRankSum=5.61;SOR=0.497	GT:AD:DP:GQ:PGT:PID:PL	0/1:396,181:577:99:0|1:96593048_G_GA:6325,0,15898
chr2	96594906	.	G	GA	2482.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.32;ClippingRankSum=0;DP=425;ExcessHet=3.0103;FS=54.585;MLEAC=1;MLEAF=0.5;MQ=33.75;MQRankSum=-5.859;QD=6.09;ReadPosRankSum=-4.823;SOR=2.718	GT:AD:DP:GQ:PGT:PID:PL	0/1:323,85:408:99:0|1:96594906_G_GA:2511,0,13160
chr2	96594915	.	TAATC	T	2961.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.63;ClippingRankSum=0;DP=433;ExcessHet=3.0103;FS=78.653;MLEAC=1;MLEAF=0.5;MQ=33.28;MQRankSum=-5.123;QD=6.84;ReadPosRankSum=-0.539;SOR=3.67	GT:AD:DP:GQ:PGT:PID:PL	0/1:341,92:433:99:0|1:96594906_G_GA:2990,0,13989
chr2	96601296	.	A	ATGATTAAT	10811.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.39;ClippingRankSum=0;DP=428;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=31.49;MQRankSum=-4.608;QD=26.5;ReadPosRankSum=-1.262;SOR=0.669	GT:AD:DP:GQ:PL	0/1:150,258:408:99:10840,0,5374
chr2	96601550	.	AAGGACCAAAT	A	387.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.501;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.94;MQRankSum=0.268;QD=17.63;ReadPosRankSum=0.526;SOR=0.313	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,11:22:99:0|1:96601547_A_T:416,0,409
chr2	96601619	.	GA	G	131.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.05;MQRankSum=0.751;QD=14.64;ReadPosRankSum=0.12;SOR=1.402	GT:AD:DP:GQ:PL	0/1:3,6:9:70:160,0,70
chr2	96606833	.	TGTTTC	T	996.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.39;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=18.101;MLEAC=1;MLEAF=0.5;MQ=44.39;MQRankSum=-6.14;QD=10.72;ReadPosRankSum=-0.856;SOR=3.816	GT:AD:DP:GQ:PGT:PID:PL	0/1:64,29:93:99:0|1:96606829_C_T:1025,0,2724
chr2	96606839	.	T	TA	993.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.476;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=18.467;MLEAC=1;MLEAF=0.5;MQ=43.77;MQRankSum=-6.026;QD=11.04;ReadPosRankSum=-0.138;SOR=3.928	GT:AD:DP:GQ:PGT:PID:PL	0/1:61,29:90:99:0|1:96606829_C_T:1022,0,2815
chr2	96606952	.	TA	T	473.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.828;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=15.065;MLEAC=1;MLEAF=0.5;MQ=47.81;MQRankSum=-6.644;QD=5.78;ReadPosRankSum=-0.278;SOR=2.465	GT:AD:DP:GQ:PL	0/1:47,35:91:99:502,0,1011
chr2	96610395	.	C	CA	4755.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-7.201;ClippingRankSum=0;DP=303;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.5;MQ=47.17;MQRankSum=-14.43;QD=16.57;ReadPosRankSum=0.228;SOR=0.782	GT:AD:DP:GQ:PGT:PID:PL	0/1:159,128:287:99:0|1:96610395_C_CA:4784,0,6285
chr2	96610787	.	C	CA	1533.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.79;MQRankSum=-5.386;QD=30.07;ReadPosRankSum=-1.946;SOR=1.848	GT:AD:DP:GQ:PGT:PID:PL	0/1:15,36:51:99:0|1:96610787_C_CA:1562,0,533
chr2	96610806	.	AGAAAG	A	335.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.95;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.5;MQ=44.37;MQRankSum=-3.486;QD=3.43;ReadPosRankSum=0.38;SOR=1.699	GT:AD:DP:GQ:PL	0/1:72,26:108:99:364,0,2818
chr2	96616313	.	A	ATT	148.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.5;MQ=47.98;MQRankSum=-1.899;QD=13.52;ReadPosRankSum=-0.365;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,4:11:99:0|1:96616310_C_T:177,0,268
chr2	96616501	.	C	CAA	2501.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.24;ClippingRankSum=0;DP=131;ExcessHet=3.0103;FS=33.926;MLEAC=1;MLEAF=0.5;MQ=42.21;MQRankSum=-4.548;QD=19.7;ReadPosRankSum=0.347;SOR=2.933	GT:AD:DP:GQ:PGT:PID:PL	0/1:62,65:127:99:0|1:96616485_C_G:2530,0,2484
chr2	96616505	.	AGC	A	2292.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=52.182;MLEAC=1;MLEAF=0.5;MQ=41.64;MQRankSum=-4.644;QD=18.95;ReadPosRankSum=1.66;SOR=4.253	GT:AD:DP:GQ:PGT:PID:PL	0/1:63,58:121:99:0|1:96616485_C_G:2321,0,2562
chr2	96780986	.	C	CTCCTCCTCT	7330.77	PASS	AC=2;AF=1;AN=2;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63;QD=35.03;SOR=1.22	GT:AD:DP:GQ:PL	1/1:0,132:138:99:7359,520,0
chr2	96950487	.	C	CT	21.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.72;ReadPosRankSum=0.39;SOR=1.27	GT:AD:DP:GQ:PL	0/1:5,3:8:50:50,0,90
chr2	96966500	.	C	CAA	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.29;MQRankSum=-0.842;QD=5.16;ReadPosRankSum=1.65;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:54:54,0,82
chr2	97017405	.	C	CA	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.579;QD=3.21;ReadPosRankSum=-1.146;SOR=0.275	GT:AD:DP:GQ:PL	0/1:7,6:16:70:70,0,124
chr2	97339155	.	C	CTG	556.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,13:13:39:585,39,0
chr2	97353460	.	G	GGGGAA	325.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.16;ReadPosRankSum=-0.849;SOR=0.084	GT:AD:DP:GQ:PL	0/1:8,9:17:99:354,0,511
chr2	97357756	.	C	CG	102.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.49;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.28;ReadPosRankSum=0.678;SOR=1.287	GT:AD:DP:GQ:PL	0/1:36,9:49:99:131,0,826
chr2	97405967	.	G	GC	59.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr2	97474739	.	G	GT	21.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.72;ReadPosRankSum=0.566;SOR=0.307	GT:AD:DP:GQ:PL	0/1:5,3:8:50:50,0,75
chr2	97495033	.	AT	A	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.11;ReadPosRankSum=0.652;SOR=1.022	GT:AD:DP:GQ:PL	0/1:3,4:7:54:71,0,54
chr2	97749246	.	T	TC	137.9	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.29;QD=34.48;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:15:166,15,0
chr2	97817563	.	C	CA	265.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=27.915;MLEAC=1;MLEAF=0.5;MQ=43.09;MQRankSum=3.73;QD=10.22;ReadPosRankSum=-0.216;SOR=1.967	GT:AD:DP:GQ:PGT:PID:PL	0/1:17,9:26:99:0|1:97817563_C_CA:294,0,705
chr2	97818260	.	GGC	G	702.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=37.723;MLEAC=1;MLEAF=0.5;MQ=41.14;MQRankSum=-4.114;QD=8.78;ReadPosRankSum=0.83;SOR=2.69	GT:AD:DP:GQ:PGT:PID:PL	0/1:58,22:80:99:0|1:97818236_A_C:731,0,2558
chr2	97818264	.	G	GTT	711.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=34.799;MLEAC=1;MLEAF=0.5;MQ=40.98;MQRankSum=-4.025;QD=8.79;SOR=2.692	GT:AD:DP:GQ:PGT:PID:PL	0/1:59,22:81:99:0|1:97818236_A_C:740,0,2455
chr2	97827818	.	C	CT	352.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.239;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.86;MQRankSum=-4.965;QD=5.11;ReadPosRankSum=-0.595;SOR=0.611	GT:AD:DP:GQ:PL	0/1:45,24:77:99:381,0,946
chr2	97829003	.	CAAAAATAA	C	412.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.18;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.5;MQ=33.2;MQRankSum=-2.592;QD=22.93;ReadPosRankSum=3.18;SOR=0.076	GT:AD:DP:GQ:PL	0/1:7,11:18:99:441,0,255
chr2	97833082	.	AT	A	38.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.04;MQRankSum=0.967;QD=12.93;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:23:67,0,23
chr2	97833139	.	GGGTCCTATTT	G	1415.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.8;MQRankSum=-0.624;QD=24.18;ReadPosRankSum=-2.433;SOR=2.133	GT:AD:DP:GQ:PGT:PID:PL	0/1:10,29:39:99:0|1:97833139_GGGTCCTATTT_G:1444,0,343
chr2	97851078	.	A	AG	692.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0;DP=345;ExcessHet=3.0103;FS=53.09;MLEAC=1;MLEAF=0.5;MQ=42.08;MQRankSum=-9.085;QD=2.01;ReadPosRankSum=4.01;SOR=2.574	GT:AD:DP:GQ:PGT:PID:PL	0/1:306,39:345:99:0|1:97851073_GC_G:721,0,13140
chr2	97851082	.	GTAAT	G	747.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DP=354;ExcessHet=3.0103;FS=43.931;MLEAC=1;MLEAF=0.5;MQ=41.65;MQRankSum=-9.163;QD=2.11;ReadPosRankSum=3.36;SOR=2.192	GT:AD:DP:GQ:PGT:PID:PL	0/1:313,41:354:99:0|1:97851073_GC_G:776,0,13275
chr2	97862060	.	G	GC	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.64;MQRankSum=-0.328;QD=16.11;ReadPosRankSum=0.328;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:97:141,0,97
chr2	97884592	.	G	GT	29.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.83;MQRankSum=-0.98;QD=2.71;ReadPosRankSum=-0.82;SOR=0.18	GT:AD:DP:GQ:PL	0/1:8,3:11:58:58,0,195
chr2	97909803	.	CTT	C	1044.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=28.63;MQRankSum=-4.087;QD=11;ReadPosRankSum=0.99;SOR=0.567	GT:AD:DP:GQ:PL	0/1:63,32:95:99:1073,0,2536
chr2	97909899	.	G	GTGGGCCGGGCGCGGTGGCTCA	270.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.084;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.38;MQRankSum=-1.456;QD=13.54;ReadPosRankSum=-3.637;SOR=0.392	GT:AD:DP:GQ:PL	0/1:12,8:20:99:299,0,480
chr2	98165710	.	GCAGCAT	G	755.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=-0.6;QD=16.43;ReadPosRankSum=-1.641;SOR=0.54	GT:AD:DP:GQ:PL	0/1:25,21:46:99:784,0,1132
chr2	98276014	.	CCCTCACCTGCCCTGACCAGAA	C	259.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.72;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=-0.102;SOR=2.517	GT:AD:DP:GQ:PL	0/1:9,8:17:99:288,0,1406
chr2	98351654	.	TG	T	106.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.9;ReadPosRankSum=-0.469;SOR=0.446	GT:AD:DP:GQ:PL	0/1:7,5:12:99:135,0,198
chr2	98376989	.	TA	T	1310.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.323;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.11;QD=9.93;ReadPosRankSum=0.302;SOR=0.905	GT:AD:DP:GQ:PL	0/1:72,60:132:99:1339,0,1769
chr2	98426413	.	T	TA	66.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr2	98795873	.	T	TG	1107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=3.49;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.6;QD=16.53;ReadPosRankSum=-2.133;SOR=2.004	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1136,0,867
chr2	98872662	.	C	CT	1495.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.723;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=15.508;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=0.748;QD=19.18;ReadPosRankSum=-0.018;SOR=0.051	GT:AD:DP:GQ:PL	0/1:13,65:88:27:1524,0,27
chr2	99234586	.	A	AT	1025.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0;QD=18.32;ReadPosRankSum=-1.013;SOR=1.501	GT:AD:DP:GQ:PL	0/1:16,40:76:99:991,0,105
chr2	99721804	.	CT	C	312.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.992;QD=3.72;ReadPosRankSum=-1.032;SOR=0.62	GT:AD:DP:GQ:PL	0/1:59,25:121:99:341,0,1334
chr2	99725479	.	A	AT	4561.77	PASS	AC=2;AF=1;AN=2;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=33.2;SOR=4.021	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4590,373,0
chr2	99779642	.	C	CA	92.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.46;ReadPosRankSum=-1.282;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,4:6:65:0|1:99779642_C_CA:121,0,65
chr2	99779653	.	AAC	A	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.63;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,2:6:62:1|0:99779642_C_CA:62,0,121
chr2	99862075	.	T	TA	60.03	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.01;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:88,12,0
chr2	99907750	.	GAGACTTCCTGGACAAGACACCAGCGATCACGGCAGGATCCATGCAGT	G	3969.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=8.29;ClippingRankSum=0;DP=361;ExcessHet=3.0103;FS=15.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=1.43;SOR=1.348	GT:AD:DP:GQ:PL	0/1:229,112:341:99:3998,0,79450
chr2	99912307	.	GA	G	121.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.31;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:150,18,0
chr2	99954276	.	C	CT	214.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr2	99954636	.	GT	G	548.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=23.86;SOR=4.003	GT:AD:DP:GQ:PL	1/1:0,23:23:69:577,69,0
chr2	99977162	.	TAGGAATGTAA	T	666.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.13;QD=28.65;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:48:695,48,0
chr2	100017906	.	CA	C	75.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.03;ReadPosRankSum=0.534;SOR=1.814	GT:AD:DP:GQ:PL	0/1:15,10:31:99:104,0,365
chr2	100046209	.	A	AAATCACTGGCCTGACTGGCAGGTCTG	639.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.73;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.66;ReadPosRankSum=-1.944;SOR=0.874	GT:AD:DP:GQ:PL	0/1:11,13:24:99:668,0,2381
chr2	100210334	.	CG	C	485.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.46;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=8.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=0.959;SOR=0.369	GT:AD:DP:GQ:PGT:PID:PL	0/1:20,13:33:99:0|1:100210334_CG_C:514,0,2192
chr2	100210337	.	CTGAGG	C	485.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=7.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=-1.183;SOR=0.612	GT:AD:DP:GQ:PGT:PID:PL	0/1:21,14:35:99:0|1:100210334_CG_C:514,0,2192
chr2	100454072	.	C	CT	377.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=1.62;SOR=0.242	GT:AD:DP:GQ:PL	0/1:14,12:26:99:406,0,487
chr2	100906570	.	A	AAAAT	961.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=31.03;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,22:22:66:990,66,0
chr2	100916481	.	A	AGG	82.28	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.33;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:9:110,9,0
chr2	101188373	.	C	CCTGTGTATGAGTGA	682.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.15;QD=16.26;ReadPosRankSum=-1.67;SOR=0.146	GT:AD:DP:GQ:PL	0/1:23,19:42:99:711,0,2543
chr2	101193133	.	CT	C	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.32;MQRankSum=-1.803;QD=5.35;ReadPosRankSum=-0.842;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,4:8:71:71,0,80
chr2	101581294	.	C	CTT	1388.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0;DP=149;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0;QD=17.15;ReadPosRankSum=0.877;SOR=0.848	GT:AD:DP:GQ:PL	0/1:43,38:137:99:1417,0,1245
chr2	101581495	.	CT	C	906.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-4.315;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=0.883;QD=19.71;ReadPosRankSum=-0.078;SOR=0.495	GT:AD:DP:GQ:PL	0/1:19,27:46:99:935,0,629
chr2	101581934	.	CA	C	157.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=26.29;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,6:8:24:164,24,0
chr2	101582245	.	AGCCCAGGCATGGGG	A	4523.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.916;ClippingRankSum=0;DP=238;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.36;QD=20.29;ReadPosRankSum=-0.123;SOR=0.884	GT:AD:DP:GQ:PL	0/1:106,117:223:99:4552,0,4075
chr2	101591537	.	ACTC	A	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.29;ReadPosRankSum=0.842;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,4:6:87:162,0,87
chr2	101620856	.	TA	T	104.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.84;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=0.857;SOR=1.27	GT:AD:DP:GQ:PL	0/1:5,8:13:91:133,0,91
chr2	101622696	.	T	TG	460.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.236;SOR=0.527	GT:AD:DP:GQ:PL	0/1:30,19:49:99:489,0,876
chr2	101627343	.	CA	C	574.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=6.706;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.446;QD=8.1;ReadPosRankSum=-1.817;SOR=1.508	GT:AD:DP:GQ:PL	0/1:34,37:89:99:603,0,704
chr2	101645856	.	T	TA	82.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.87;ReadPosRankSum=0.803;SOR=0.148	GT:AD:DP:GQ:PL	0/1:9,8:17:99:111,0,149
chr2	102033851	.	T	TA	213.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.8;QD=34.47;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr2	102314633	.	G	GGGCAGCC	282.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.283;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.67;ReadPosRankSum=-1.093;SOR=0.693	GT:AD:DP:GQ:PL	0/1:8,8:16:99:311,0,537
chr2	102503486	.	CAA	C	573.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.37;MQRankSum=-0.956;QD=17.93;ReadPosRankSum=0.183;SOR=0.972	GT:AD:DP:GQ:PL	0/1:13,19:67:99:602,0,457
chr2	102788491	.	CT	C	69.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.282;QD=11.64;ReadPosRankSum=-0.812;SOR=2.093	GT:AD:DP:GQ:PL	0/1:2,4:9:4:80,0,4
chr2	102957628	.	C	CT	695.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.657;SOR=0.966	GT:AD:DP:GQ:PL	0/1:17,33:79:99:724,0,290
chr2	102958506	.	CGTGTGTGTGT	C	207.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.157;QD=29.71;ReadPosRankSum=-0.489;SOR=2.833	GT:AD:DP:GQ:PL	0/1:1,6:8:71:235,0,71
chr2	103040247	.	T	TG	2041.77	PASS	AC=2;AF=1;AN=2;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=31.66;SOR=5.235	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,42:42:99:1|1:103040247_T_TG:2070,138,0
chr2	103311338	.	AGTTT	A	736.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=5.784	GT:AD:DP:GQ:PL	1/1:0,17:17:51:765,51,0
chr2	103322496	.	C	CAATGAGAACACTT	107.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:103322496_C_CAATGAGAACACTT:134,9,0
chr2	103340014	.	AG	A	97.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.26;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:125,12,0
chr2	103343275	.	G	GA	548.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.508;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.15;ReadPosRankSum=0.47;SOR=0.892	GT:AD:DP:GQ:PL	0/1:5,27:51:25:526,0,25
chr2	105665447	.	AG	A	76.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr2	105665921	.	GA	G	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.85;ReadPosRankSum=0.816;SOR=1.981	GT:AD:DP:GQ:PL	0/1:4,4:8:91:91,0,96
chr2	105665941	.	GTT	G	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=0;SOR=2.833	GT:AD:DP:GQ:PL	0/1:2,3:5:77:120,0,77
chr2	105706584	.	AAAAAC	A	163.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=0.748;QD=14.89;ReadPosRankSum=0.092;SOR=0.036	GT:AD:DP:GQ:PL	0/1:6,5:11:99:192,0,355
chr2	105883624	.	TTTCCATGTACATTCATAGAGCCTGGTCA	T	109.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.49;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:136,9,0
chr2	105953938	.	G	GC	1687.77	PASS	AC=2;AF=1;AN=2;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.73;QD=30.07;SOR=0.883	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1716,132,0
chr2	106471825	.	C	CA	333.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.52;ReadPosRankSum=-0.201;SOR=3.16	GT:AD:DP:GQ:PL	0/1:3,15:21:8:353,0,8
chr2	106509301	.	C	CA	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.92;ReadPosRankSum=-0.919;SOR=0.223	GT:AD:DP:GQ:PL	0/1:10,5:15:72:72,0,145
chr2	106710668	.	C	CGCAGGAAGGAAGTGCCACCTT	665.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.53;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.66;ReadPosRankSum=-0.316;SOR=0.765	GT:AD:DP:GQ:PL	0/1:13,14:27:99:694,0,1906
chr2	106739755	.	GGA	G	176.18	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.36;ReadPosRankSum=-0.21;SOR=0.941	GT:AD:DP:GQ:PL	1/1:1,5:6:10:204,10,0
chr2	106780055	.	C	CTG	1185.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,26:26:84:1214,84,0
chr2	107007994	.	TA	T	570.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.688;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.5;MQ=27.55;MQRankSum=0.902;QD=8.04;ReadPosRankSum=1.23;SOR=0.481	GT:AD:DP:GQ:PL	0/1:37,34:71:99:599,0,762
chr2	107049234	.	T	TA	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.78;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.36;MQRankSum=-2.661;QD=4.23;ReadPosRankSum=0.867;SOR=0.746	GT:AD:DP:GQ:PL	0/1:18,11:37:99:151,0,278
chr2	107429570	.	G	GTT	58.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.9;ReadPosRankSum=0.879;SOR=0.446	GT:AD:DP:GQ:PL	0/1:8,4:14:87:87,0,244
chr2	107446370	.	GA	G	171.56	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.47;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.51;ReadPosRankSum=-0.366;SOR=2.584	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,6:7:7:0|1:107446370_GA_G:199,0,7
chr2	108479622	.	CT	C	152.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=29.41;MQRankSum=0.125;QD=6.64;ReadPosRankSum=0.37;SOR=0.089	GT:AD:DP:GQ:PL	0/1:11,12:23:99:181,0,173
chr2	108622812	.	TTA	T	966.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.79;SOR=4.892	GT:AD:DP:GQ:PL	1/1:0,23:23:69:995,69,0
chr2	108622833	.	AT	A	79.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-0.308;SOR=3.383	GT:AD:DP:GQ:PL	0/1:3,7:10:21:108,0,21
chr2	108875464	.	AAAACTTGGTCAGGTGATGTTAT	A	3437.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.88;ClippingRankSum=0;DP=241;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=2.08;QD=15.14;ReadPosRankSum=-0.252;SOR=0.813	GT:AD:DP:GQ:PL	0/1:133,94:227:99:3466,0,6288
chr2	108999358	.	CAAAAAAA	C	108.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.5;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	108999483	.	CA	C	166.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=4.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.63;ReadPosRankSum=-0.062;SOR=0.251	GT:AD:DP:GQ:PL	0/1:31,15:68:99:195,0,624
chr2	109069147	.	CT	C	34.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=11.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:61,9,0
chr2	109106134	.	T	TG	54.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	109357252	.	T	TTAAAA	472.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.19;MQRankSum=-1.614;QD=7.06;ReadPosRankSum=-5.814;SOR=0.135	GT:AD:DP:GQ:PL	0/1:49,18:67:99:501,0,3384
chr2	109371230	.	G	GTAT	502.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.36;MQRankSum=-3.249;QD=15.71;ReadPosRankSum=-0.96;SOR=0.399	GT:AD:DP:GQ:PL	0/1:19,13:32:99:531,0,868
chr2	109393522	.	TG	T	2408.77	PASS	AC=2;AF=1;AN=2;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=33.93;SOR=4.499	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2437,214,0
chr2	109393767	.	TATAAC	T	1038.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.72;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=9.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=-1.277;SOR=2.147	GT:AD:DP:GQ:PGT:PID:PL	0/1:45,28:73:99:0|1:109393766_A_T:1067,0,1871
chr2	109393786	.	TC	T	870.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.16;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.55;ReadPosRankSum=-2.09;SOR=1.423	GT:AD:DP:GQ:PGT:PID:PL	0/1:34,22:56:99:0|1:109393766_A_T:899,0,1591
chr2	109393789	.	TCCCTTACCCCCC	T	789.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=-1.769;SOR=1.061	GT:AD:DP:GQ:PGT:PID:PL	0/1:34,22:56:99:0|1:109393766_A_T:818,0,1593
chr2	109393803	.	GT	G	865.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.373;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.82;ReadPosRankSum=-2.498;SOR=1.118	GT:AD:DP:GQ:PGT:PID:PL	0/1:24,22:46:99:0|1:109393766_A_T:894,0,1128
chr2	109393807	.	G	GTTTAGT	868.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.74;ReadPosRankSum=-1.285;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,22:44:99:0|1:109393766_A_T:897,0,1086
chr2	109404474	.	C	CT	254.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.767;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.279;SOR=1.609	GT:AD:DP:GQ:PL	0/1:12,13:28:99:283,0,196
chr2	109411248	.	GAATAT	G	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.1;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=1.66;SOR=1.688	GT:AD:DP:GQ:PL	0/1:11,6:17:99:219,0,738
chr2	109415164	.	TACACACACAC	T,TACACAC	294.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.63;QD=32.75;SOR=3.056	GT:AD:DP:GQ:PL	1/2:0,3,6:9:99:323,206,285,123,0,105
chr2	109421334	.	TCTC	T	601.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.612;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0;QD=7.08;ReadPosRankSum=1.85;SOR=0.772	GT:AD:DP:GQ:PL	0/1:54,31:92:99:630,0,2410
chr2	109489753	.	AATG	A	262.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.08;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=1.28;QD=13.83;ReadPosRankSum=-0.663;SOR=0.446	GT:AD:DP:GQ:PL	0/1:11,8:19:99:291,0,504
chr2	109522747	.	CT	C	3454.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.186;ClippingRankSum=0;DP=389;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.77;QD=9.57;ReadPosRankSum=-0.977;SOR=0.851	GT:AD:DP:GQ:PL	0/1:184,177:361:99:3483,0,4039
chr2	109529404	.	C	CTT	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.13;ReadPosRankSum=-0.842;SOR=2.093	GT:AD:DP:GQ:PL	0/1:3,3:6:53:53,0,65
chr2	109930355	.	T	TG	48.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	110321803	.	T	TA	72.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.62;ReadPosRankSum=1.2;SOR=0.061	GT:AD:DP:GQ:PL	0/1:7,4:11:99:101,0,217
chr2	110886686	.	A	AGACCAGAT	1173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.34;ReadPosRankSum=0;SOR=0.582	GT:AD:DP:GQ:PL	0/1:27,28:55:99:1202,0,1554
chr2	110922064	.	C	CA	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.24;ReadPosRankSum=-0.04;SOR=0.49	GT:AD:DP:GQ:PL	0/1:25,8:41:99:102,0,467
chr2	110925982	.	G	GA	308.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.438;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.61;ReadPosRankSum=-1.023;SOR=0.588	GT:AD:DP:GQ:PL	0/1:35,20:62:99:337,0,650
chr2	111397237	.	CT	C	185.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=6.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.44;ReadPosRankSum=-0.564;SOR=0.077	GT:AD:DP:GQ:PL	0/1:38,16:72:99:214,0,850
chr2	111644491	.	TA	T	6957.77	PASS	AC=2;AF=1;AN=2;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.5;QD=29.26;SOR=3.163	GT:AD:DP:GQ:PL	1/1:0,188:188:99:6986,566,0
chr2	111721142	.	ATGTGTGTG	A,ATG	1549.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=30.35;SOR=3.202	GT:AD:DP:GQ:PL	1/2:0,13,26:39:99:1578,791,712,391,0,276
chr2	111881263	.	A	AT	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0.925;QD=9.54;ReadPosRankSum=-0.134;SOR=0.352	GT:AD:DP:GQ:PL	0/1:9,11:22:99:219,0,160
chr2	111886180	.	CT	C	394.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.878;QD=6.17;ReadPosRankSum=0.092;SOR=0.625	GT:AD:DP:GQ:PL	0/1:35,29:83:99:423,0,670
chr2	111887686	.	C	CT	12.48	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=2;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.24;ReadPosRankSum=0.674;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,1:2:6:0|1:111887686_C_CT:39,0,6
chr2	112582766	.	CTT	C	983.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.5;MQ=53.71;MQRankSum=-2.525;QD=20.5;ReadPosRankSum=-0.331;SOR=0.269	GT:AD:DP:GQ:PL	0/1:22,26:48:99:1012,0,955
chr2	112601397	.	C	CTTTTTT	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=46.29;MQRankSum=0.842;QD=9.35;ReadPosRankSum=-1.645;SOR=0.061	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,110
chr2	112686531	.	G	GC	203.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.55;ReadPosRankSum=-0.313;SOR=2.303	GT:AD:DP:GQ:PL	0/1:8,6:14:99:232,0,279
chr2	112687157	.	A	ATATTTATTTATT	333.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.59;MQRankSum=1.75;QD=13.35;ReadPosRankSum=-0.999;SOR=0.387	GT:AD:DP:GQ:PL	0/1:15,10:25:99:362,0,585
chr2	112725684	.	A	ATGTGTG	2473.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.3;ClippingRankSum=0;DP=190;ExcessHet=3.0103;FS=5.637;MLEAC=1;MLEAF=0.5;MQ=60.96;MQRankSum=3.85;QD=17.18;ReadPosRankSum=0.112;SOR=1.243	GT:AD:DP:GQ:PL	0/1:82,62:160:99:2502,0,4780
chr2	112740596	.	GA	G	4452.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0;DP=254;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.81;ReadPosRankSum=-0.143;SOR=0.606	GT:AD:DP:GQ:PGT:PID:PL	0/1:132,118:250:99:0|1:112740596_GA_G:4481,0,8190
chr2	112776913	.	T	TC	1814.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.35;QD=12.18;ReadPosRankSum=2.56;SOR=0.668	GT:AD:DP:GQ:PL	0/1:70,79:149:99:1843,0,1545
chr2	112779286	.	A	ATC	255.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=1.23;QD=14.21;ReadPosRankSum=1.29;SOR=0.495	GT:AD:DP:GQ:PL	0/1:10,8:18:99:284,0,342
chr2	112786523	.	A	AT	117.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=0.736;QD=9.06;ReadPosRankSum=-0.552;SOR=0.569	GT:AD:DP:GQ:PL	0/1:7,6:13:99:146,0,180
chr2	112834615	.	CA	C	40.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.489;QD=5.1;ReadPosRankSum=-0.414;SOR=0.105	GT:AD:DP:GQ:PL	0/1:3,5:8:31:69,0,31
chr2	112843565	.	AT	A	857.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.16;QD=8.25;ReadPosRankSum=0.053;SOR=0.523	GT:AD:DP:GQ:PL	0/1:59,45:104:99:886,0,1376
chr2	113307023	.	C	CT	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.25;ReadPosRankSum=-0.976;SOR=0.551	GT:AD:DP:GQ:PL	0/1:6,5:11:75:75,0,87
chr2	113310197	.	CT	C	681.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.86;ReadPosRankSum=-0.496;SOR=1.981	GT:AD:DP:GQ:PL	0/1:8,35:47:66:710,0,66
chr2	113315735	.	CT	C	716.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=27.57;SOR=4.255	GT:AD:DP:GQ:PL	1/1:0,26:26:78:745,78,0
chr2	113332300	.	TAAA	T	151.77	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=33;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,4:6:17:156,17,0
chr2	113418276	.	A	AG	670.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.43;SOR=4.174	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,16:16:48:1|1:113418276_A_AG:699,48,0
chr2	113418277	.	T	TG	670.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=4.174	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,16:16:48:1|1:113418276_A_AG:699,48,0
chr2	113479745	.	AC	A	2725.77	PASS	AC=2;AF=1;AN=2;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=31.33;SOR=0.716	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2754,262,0
chr2	113480493	.	G	GCCCC	1581.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=2.115	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,35:35:99:1|1:113480491_T_C:1610,108,0
chr2	113480495	.	A	AATCCTGC	1671.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=1.885	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,35:35:99:1|1:113480491_T_C:1700,114,0
chr2	113480498	.	C	CTGGTGCTGCCCCCAAGGGGTG	1670.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=1.352	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,33:33:99:1|1:113480491_T_C:1699,114,0
chr2	113480556	.	GC	G	945.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=6.208;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.8;QD=13.32;ReadPosRankSum=-0.834;SOR=0.09	GT:AD:DP:GQ:PL	0/1:36,35:71:99:974,0,995
chr2	113480938	.	G	GCACACA	213.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:18:242,18,0
chr2	113504372	.	ATT	A	32.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:27:61,0,27
chr2	113514883	.	AT	A	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.754;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.26;ReadPosRankSum=2.02;SOR=0.052	GT:AD:DP:GQ:PL	0/1:12,6:18:99:141,0,393
chr2	113535770	.	GGT	G	143.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=0.282;QD=15.97;ReadPosRankSum=1.09;SOR=4.174	GT:AD:DP:GQ:PL	0/1:2,7:9:28:172,0,28
chr2	113588755	.	CAA	C	364.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.2;ReadPosRankSum=-1.173;SOR=0.368	GT:AD:DP:GQ:PL	0/1:9,10:19:99:393,0,337
chr2	113592892	.	GA	G	96.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.83;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.13;ReadPosRankSum=-0.253;SOR=3.258	GT:AD:DP:GQ:PL	0/1:2,4:6:50:125,0,50
chr2	113675890	.	G	GTC	76.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr2	113953111	.	CGGATGGATGGATGGATGGATGGAT	C,CGGATGGATGGATGGATGGATGGATGGAT	703.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=27.51;SOR=5.892	GT:AD:DP:GQ:PL	1/2:0,12,6:18:99:732,251,551,480,0,463
chr2	113953973	.	A	AT	364.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.695;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=1.63;QD=15.2;ReadPosRankSum=-1.131;SOR=0.527	GT:AD:DP:GQ:PGT:PID:PL	0/1:13,11:24:99:0|1:113953973_A_AT:393,0,782
chr2	113953974	.	GACA	G	364.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.76;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.86;ReadPosRankSum=-0.221;SOR=0.582	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,9:23:99:0|1:113953973_A_AT:393,0,782
chr2	113992800	.	TCC	T	208.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.18;QD=29.83;ReadPosRankSum=0;SOR=2.584	GT:AD:DP:GQ:PL	0/1:1,6:7:24:237,0,24
chr2	114004577	.	GGT	G	108.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.298;SOR=0.693	GT:AD:DP:GQ:PL	0/1:5,5:10:99:137,0,159
chr2	114392865	.	GCTT	G	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.61;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=0;QD=21.6;ReadPosRankSum=2.37;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:99:201,0,111
chr2	114480812	.	A	AAAC	845.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=27.98;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,20:20:60:874,60,0
chr2	114480938	.	C	CAA	108.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.15;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	114486880	.	GA	G	227.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=11.69;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.965;QD=9.9;ReadPosRankSum=0.312;SOR=3.912	GT:AD:DP:GQ:PL	0/1:10,13:23:99:256,0,206
chr2	114691809	.	G	GT	141.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.88;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.3;ReadPosRankSum=0.035;SOR=0.522	GT:AD:DP:GQ:PL	0/1:30,13:46:99:170,0,570
chr2	116519965	.	GT	G	125.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.72;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:78:154,0,78
chr2	116539846	.	GA	G	258.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.15;MQRankSum=1.85;QD=9.95;ReadPosRankSum=-2.284;SOR=0.693	GT:AD:DP:GQ:PL	0/1:13,13:26:99:287,0,293
chr2	116593675	.	ATG	A	244.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.522;SOR=0.54	GT:AD:DP:GQ:PL	0/1:13,9:24:99:273,0,410
chr2	116593695	.	GAT	G	506.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.107;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=5.553;MLEAC=1;MLEAF=0.5;MQ=61.31;MQRankSum=1.71;QD=17.47;ReadPosRankSum=0.537;SOR=0.099	GT:AD:DP:GQ:PL	0/1:12,17:36:99:535,0,299
chr2	118578691	.	TA	T	390.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.6;QD=22.99;SOR=2.712	GT:AD:DP:GQ:PL	1/1:0,17:17:51:419,51,0
chr2	118582936	.	A	ATAAAG	1910.77	PASS	AC=2;AF=1;AN=2;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=3.145	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1939,132,0
chr2	118753148	.	A	ATC	1806.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=26.13;SOR=4.073	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1835,123,0
chr2	118771682	.	TGCC	T	305.78	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,8:8:24:334,24,0
chr2	118866033	.	G	GA	90.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=0.511;SOR=1.329	GT:AD:DP:GQ:PL	0/1:6,4:10:99:119,0,190
chr2	119915132	.	CG	C	1849.77	PASS	AC=2;AF=1;AN=2;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=32.45;SOR=2.794	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,57:57:99:1|1:119915132_CG_C:1878,171,0
chr2	120005839	.	CT	C	176.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=6.806;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.88;QD=2.36;ReadPosRankSum=1.04;SOR=1.828	GT:AD:DP:GQ:PL	0/1:58,17:75:99:205,0,1533
chr2	120005840	.	TC	T	919.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-1.382;QD=13.94;ReadPosRankSum=1.9;SOR=0.638	GT:AD:DP:GQ:PL	0/1:22,44:66:99:948,0,482
chr2	120194651	.	A	AGTGTGC	2337.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=5.55;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=7.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.85;ReadPosRankSum=-0.398;SOR=1.34	GT:AD:DP:GQ:PL	0/1:69,55:124:99:2366,0,5690
chr2	120219287	.	CAAAA	C	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=0;QD=7.9;ReadPosRankSum=0;SOR=2.303	GT:AD:DP:GQ:PL	0/1:8,4:14:99:123,0,390
chr2	120222030	.	G	GA	31.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:9:59,0,9
chr2	120317621	.	CT	C	376.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=3.817;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.963;QD=6.18;ReadPosRankSum=0.905;SOR=0.33	GT:AD:DP:GQ:PL	0/1:33,28:107:99:405,0,641
chr2	120366057	.	G	GT	2099.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0;DP=141;ExcessHet=3.0103;FS=3.907;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0;QD=20.19;ReadPosRankSum=-3.287;SOR=1.312	GT:AD:DP:GQ:PL	0/1:17,87:126:32:2066,0,32
chr2	120368996	.	C	CAA	81.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.06;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:120368992_A_C:108,9,0
chr2	120385094	.	GATATAT	G	727.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=31.43;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,15:18:53:705,53,0
chr2	120404629	.	ATT	A,AT	3605.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DP=291;ExcessHet=3.0103;FS=5.976;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.22;MQRankSum=0.837;QD=17.17;ReadPosRankSum=0.685;SOR=1.543	GT:AD:DP:GQ:PL	1/2:22,44,144:218:99:3634,2426,3185,538,0,434
chr2	120704164	.	A	AT	5196.77	PASS	AC=2;AF=1;AN=2;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.31;SOR=1.843	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,117:117:99:1|1:120704164_A_AT:5225,364,0
chr2	120714401	.	CT	C	193.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0;DP=111;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.39;QD=2.73;ReadPosRankSum=0.173;SOR=0.784	GT:AD:DP:GQ:PL	0/1:49,22:101:99:222,0,1161
chr2	120776972	.	TG	T	1658.77	PASS	AC=2;AF=1;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=33.12;SOR=7.476	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,41:41:99:1|1:120776972_TG_T:1687,123,0
chr2	120830505	.	T	TA	51.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.92;QD=17.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
chr2	120831654	.	C	CT	332.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=6.52;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.932;QD=7.74;ReadPosRankSum=0.366;SOR=1.789	GT:AD:DP:GQ:PL	0/1:24,19:54:99:361,0,477
chr2	121038290	.	GA	G	324.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0.471;QD=20.3;ReadPosRankSum=0.641;SOR=3.056	GT:AD:DP:GQ:PL	1/1:1,15:19:32:342,32,0
chr2	121712728	.	CCTT	C	283.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.94;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.92;ReadPosRankSum=1.14;SOR=1.022	GT:AD:DP:GQ:PL	0/1:6,9:35:99:276,0,158
chr2	121732355	.	AGTGT	A,AGT	698.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.77;QD=31.76;SOR=3.258	GT:AD:DP:GQ:PL	1/2:0,5,17:22:99:727,544,535,167,0,108
chr2	121740609	.	CTT	C	376.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr2	122227869	.	C	CT	61.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.508;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.79;ReadPosRankSum=0.812;SOR=2.093	GT:AD:DP:GQ:PL	0/1:2,7:9:11:89,0,11
chr2	122520713	.	G	GTT	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=10.268;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=1.17;QD=3.8;ReadPosRankSum=0.776;SOR=0.058	GT:AD:DP:GQ:PL	0/1:14,7:31:99:108,0,405
chr2	125000164	.	CG	C	94.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	127811712	.	G	GCA	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr2	127816846	.	CTG	C	168.84	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:197,18,0
chr2	127944781	.	A	AC	1505.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.91;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1534,114,0
chr2	127960745	.	G	GA	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.97;ReadPosRankSum=-0.12;SOR=2.303	GT:AD:DP:GQ:PL	0/1:4,5:9:47:91,0,47
chr2	128029065	.	GA	G	378.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.244;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=0.126;SOR=0.478	GT:AD:DP:GQ:PL	0/1:24,24:50:99:407,0,508
chr2	128044121	.	CA	C	86.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=-0.18;QD=12.32;ReadPosRankSum=-0.366;SOR=0.527	GT:AD:DP:GQ:PL	0/1:1,6:7:4:113,0,4
chr2	128075624	.	C	CT	257.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.43;ReadPosRankSum=0.17;SOR=1.863	GT:AD:DP:GQ:PL	1/1:2,9:16:3:227,3,0
chr2	128181234	.	GC	G	142.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.51;ReadPosRankSum=-0.804;SOR=0.754	GT:AD:DP:GQ:PL	0/1:12,7:19:99:171,0,334
chr2	128261245	.	AAAAT	A	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=1.11;QD=12.23;ReadPosRankSum=0.705;SOR=0.446	GT:AD:DP:GQ:PL	0/1:7,5:12:99:175,0,308
chr2	128263363	.	CA	C	107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.16;QD=3.99;ReadPosRankSum=-1.901;SOR=0.495	GT:AD:DP:GQ:PL	0/1:18,9:33:99:136,0,409
chr2	128324125	.	C	CT	2523.77	PASS	AC=2;AF=1;AN=2;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=24.97;SOR=5.421	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2552,193,0
chr2	128341531	.	AGT	A	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.765;QD=12.53;ReadPosRankSum=0.12;SOR=2.712	GT:AD:DP:GQ:PL	0/1:5,4:9:99:141,0,195
chr2	128350578	.	T	TG	1121.77	PASS	AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=2.765	GT:AD:DP:GQ:PL	1/1:0,32:32:99:1150,99,0
chr2	128363530	.	G	GC	2217.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.64;QD=34.65;SOR=1.721	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2246,192,0
chr2	128386120	.	TGGGTG	T	195.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=0.605;QD=17.8;ReadPosRankSum=-0.346;SOR=1.802	GT:AD:DP:GQ:PL	0/1:5,6:11:99:224,0,261
chr2	128394875	.	C	CA	1159.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.09;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.57;ReadPosRankSum=0.36;SOR=0.602	GT:AD:DP:GQ:PGT:PID:PL	0/1:34,32:66:99:0|1:128394875_C_CA:1188,0,1410
chr2	128408121	.	G	GC	335.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=2.093	GT:AD:DP:GQ:PL	1/1:0,9:9:27:364,27,0
chr2	128526579	.	T	TTAAA	778.77	PASS	AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;QD=31.27;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,18:18:53:807,53,0
chr2	128528266	.	AAAATAAAT	A,AAAAT	922.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=57.79;QD=29.34;SOR=4.892	GT:AD:DP:GQ:PL	1/2:0,9,14:23:99:951,576,560,378,0,336
chr2	128608271	.	GA	G	87.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.98;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-0.608;SOR=0.061	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,4:11:99:0|1:128608271_GA_G:116,0,310
chr2	128770731	.	G	GA	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.67;ReadPosRankSum=-1.994;SOR=0.527	GT:AD:DP:GQ:PL	0/1:18,7:30:95:95,0,377
chr2	128878523	.	TGCGTTAGTGTA	T	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr2	128890878	.	T	TG	1829.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.76;QD=15.25;ReadPosRankSum=-0.906;SOR=0.776	GT:AD:DP:GQ:PL	0/1:60,60:120:99:1858,0,1833
chr2	128936171	.	TATG	T	3233.06	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.92;ClippingRankSum=0;DP=198;ExcessHet=3.0103;FS=9.894;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=3.39;QD=17.76;ReadPosRankSum=0.152;SOR=1.4	GT:AD:DP:GQ:PL	0/1:95,87:182:99:3264,0,4393
chr2	128941483	.	G	GGT	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0;QD=4.95;ReadPosRankSum=-1.383;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:48:48,0,69
chr2	131127129	.	TTG	T	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=1.79;QD=6.46;ReadPosRankSum=0.494;SOR=0.829	GT:AD:DP:GQ:PL	0/1:14,5:19:99:151,0,549
chr2	131129928	.	AGACGGG	A	119.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.43;MQRankSum=1.24;QD=14.97;ReadPosRankSum=-1.1;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,4:8:99:148,0,281
chr2	131378845	.	G	GT	59.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.291;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.38;MQRankSum=-1.006;QD=8.54;ReadPosRankSum=-1.006;SOR=0.223	GT:AD:DP:GQ:PL	0/1:3,4:7:53:88,0,53
chr2	132111166	.	G	GCC	695.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.04;QD=31;SOR=1.473	GT:AD:DP:GQ:PL	1/1:0,15:15:51:724,51,0
chr2	132111167	.	G	GCCGCCGC,GCCGCCGCCGC	656.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=37.04;QD=30.4;SOR=1.609	GT:AD:DP:GQ:PL	1/2:0,3,10:13:96:685,431,409,138,0,96
chr2	132120501	.	C	CT	2990.77	PASS	AC=2;AF=1;AN=2;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.18;QD=27.69;SOR=4.037	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3019,324,0
chr2	132241502	.	T	TA	221.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.3;MQRankSum=-2.593;QD=5.16;ReadPosRankSum=-1.017;SOR=0.524	GT:AD:DP:GQ:PL	0/1:29,14:62:99:250,0,561
chr2	132905925	.	CTT	C	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.78;MQRankSum=1.42;QD=11.2;ReadPosRankSum=-0.366;SOR=1.402	GT:AD:DP:GQ:PL	0/1:3,6:9:58:129,0,58
chr2	132912217	.	T	TA	555.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.194;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.5;MQ=58.89;MQRankSum=-2.8;QD=10.1;ReadPosRankSum=0.236;SOR=1.079	GT:AD:DP:GQ:PL	0/1:28,27:55:99:584,0,538
chr2	133014651	.	A	AC	1916.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.12;MQRankSum=-6.336;QD=18.43;ReadPosRankSum=-0.87;SOR=0.652	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1945,0,1640
chr2	133014827	.	C	CA	268.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.951;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=9.69;MLEAC=1;MLEAF=0.5;MQ=58.76;MQRankSum=0.928;QD=8.14;ReadPosRankSum=-0.87;SOR=2.765	GT:AD:DP:GQ:PGT:PID:PL	0/1:24,9:33:99:0|1:133014827_C_CA:297,0,955
chr2	133425786	.	TTAACTC	T	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0.732;SOR=0.283	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,477
chr2	133472385	.	CA	C	99.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.334;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.05;MQRankSum=0;QD=7.62;ReadPosRankSum=-0.139;SOR=0.859	GT:AD:DP:GQ:PL	0/1:5,8:19:95:127,0,95
chr2	133636186	.	TACAC	T	158.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=1.07;QD=22.68;ReadPosRankSum=0.712;SOR=0.527	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,5:7:70:0|1:133636186_TACAC_T:187,0,70
chr2	133636211	.	ACACACACACACACACACG	A	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.28;MQRankSum=-1.15;QD=4.35;ReadPosRankSum=-0.366;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,2:8:63:1|0:133636186_TACAC_T:63,0,281
chr2	133636236	.	TAC	T	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.28;MQRankSum=-1.221;QD=3.86;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,2:9:63:1|0:133636186_TACAC_T:63,0,281
chr2	135096230	.	CTT	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	135102453	.	TA	T	1257.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=10.715;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.61;QD=12.33;ReadPosRankSum=-0.181;SOR=2.144	GT:AD:DP:GQ:PL	0/1:57,45:102:99:1286,0,1606
chr2	135107662	.	T	TTTTTTGTTTTTG	374.78	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:26:403,26,0
chr2	135214418	.	A	AT	568.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=5.2;MLEAC=1;MLEAF=0.5;MQ=60.56;MQRankSum=2.07;QD=8.89;ReadPosRankSum=-1.277;SOR=0.172	GT:AD:DP:GQ:PL	0/1:32,32:64:99:597,0,571
chr2	135619357	.	T	TA	606.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=3.383	GT:AD:DP:GQ:PL	1/1:0,17:17:51:635,51,0
chr2	135677471	.	A	AGTTT	10812.8	PASS	AC=2;AF=1;AN=2;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=31.67;SOR=1.721	GT:AD:DP:GQ:PL	1/1:0,240:240:99:10841,742,0
chr2	135703338	.	CT	C	2958.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;MQRankSum=0.458;QD=22.76;ReadPosRankSum=-0.176;SOR=1.11	GT:AD:DP:GQ:PL	1/1:4,126:133:99:2987,295,0
chr2	135743234	.	TCAAA	T	2101.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=31.7;SOR=5.507	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2130,145,0
chr2	135748872	.	AAAAAC	A	286.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.13;QD=31.93;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr2	136070923	.	CA	C	48.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.06;ReadPosRankSum=-0.392;SOR=2.387	GT:AD:DP:GQ:PL	0/1:7,5:17:77:77,0,141
chr2	136399543	.	AT	A	75.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.589;QD=8.42;ReadPosRankSum=0.475;SOR=0.941	GT:AD:DP:GQ:PL	0/1:4,5:9:82:104,0,82
chr2	136481348	.	CA	C	34.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.98;ReadPosRankSum=1.98;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,5:7:18:63,0,18
chr2	136527443	.	G	GTGAT	798.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=5.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.82;ReadPosRankSum=-1.426;SOR=1.609	GT:AD:DP:GQ:PL	0/1:16,19:35:99:827,0,855
chr2	136552512	.	A	AC	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:136552512_A_AC:90,6,0
chr2	136587400	.	A	AGTGTGTGTGT	126.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr2	136610222	.	GA	G	21.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.63;ReadPosRankSum=-1.96;SOR=0.991	GT:AD:DP:GQ:PL	0/1:3,3:6:50:50,0,58
chr2	136664812	.	C	CTTTTTTTTTTTTT	540.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=8.068;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-0.798;QD=27.04;ReadPosRankSum=0.061;SOR=3.169	GT:AD:DP:GQ:PL	0/1:12,8:47:99:569,0,1008
chr2	136690414	.	TA	T	903.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.1;ReadPosRankSum=0.402;SOR=1.075	GT:AD:DP:GQ:PGT:PID:PL	0/1:9,27:36:99:0|1:136690414_TA_T:932,0,100
chr2	137640006	.	CT	C	178.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.557;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.01;QD=9.93;ReadPosRankSum=0.045;SOR=0.269	GT:AD:DP:GQ:PL	0/1:8,10:18:99:207,0,169
chr2	138378351	.	AG	A	2099.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.897;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.5;QD=15.91;ReadPosRankSum=0.244;SOR=0.676	GT:AD:DP:GQ:PL	0/1:69,63:132:99:2128,0,2352
chr2	139308397	.	T	TTCTCTC	229.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.736;QD=17.67;ReadPosRankSum=-1.412;SOR=0.551	GT:AD:DP:GQ:PL	0/1:7,6:13:99:258,0,431
chr2	141298313	.	A	AC	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=-1.383;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr2	141473409	.	CA	C	207.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.64;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:236,18,0
chr2	141474402	.	G	GA	2274.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.169;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.76;ReadPosRankSum=-1.534;SOR=2.786	GT:AD:DP:GQ:PL	1/1:1,84:87:99:2303,236,0
chr2	141526600	.	A	AT	25.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr2	141598473	.	A	AT	3457.77	PASS	AC=2;AF=1;AN=2;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.44;QD=26.52;SOR=3.109	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3486,268,0
chr2	141625834	.	TA	T	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.8;ReadPosRankSum=-0.906;SOR=0.739	GT:AD:DP:GQ:PL	0/1:25,11:51:99:129,0,469
chr2	141707711	.	TTC	T	211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.53;ReadPosRankSum=1.12;SOR=0.446	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,6:9:79:0|1:141707694_C_T:240,0,79
chr2	142012344	.	AT	A	52.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	142237728	.	TTGTGTGTGTGTGTG	T,TTG	349.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.48;QD=33.69;SOR=3.056	GT:AD:DP:GQ:PL	1/2:0,5,4:9:99:378,139,113,173,0,147
chr2	142567680	.	GAA	G	46.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.19;QD=23.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr2	143718459	.	T	TAAAA	181.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=3.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=0.958;SOR=2.303	GT:AD:DP:GQ:PL	0/1:16,5:30:99:210,0,853
chr2	144193151	.	C	CT	379.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=9.335;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.876;QD=6.78;ReadPosRankSum=0.598;SOR=0.157	GT:AD:DP:GQ:PL	0/1:34,22:81:99:408,0,644
chr2	148602544	.	C	CT	94.78	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=23.7;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,4:5:15:113,15,0
chr2	148733548	.	T	TA	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1;QD=10.78;ReadPosRankSum=-0.185;SOR=0.566	GT:AD:DP:GQ:PL	0/1:13,15:28:99:330,0,248
chr2	149240657	.	GT	G	2463.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.77;ClippingRankSum=0;DP=155;ExcessHet=3.0103;FS=2.858;MLEAC=2;MLEAF=1;MQ=60.27;MQRankSum=0.758;QD=18.12;ReadPosRankSum=0.676;SOR=0.36	GT:AD:DP:GQ:PL	1/1:14,122:143:70:2492,70,0
chr2	149402404	.	C	CG	231.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.11;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:260,21,0
chr2	151328284	.	GA	G	1222.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.849;QD=15.88;ReadPosRankSum=0.757;SOR=0.82	GT:AD:DP:GQ:PL	0/1:16,61:87:99:1251,0,149
chr2	151343663	.	C	CT	230.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=-0.168;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,13:19:78:258,0,78
chr2	151343978	.	GA	G	166.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.61;MQRankSum=-0.874;QD=2.98;ReadPosRankSum=1.52;SOR=0.321	GT:AD:DP:GQ:PL	0/1:40,16:56:99:195,0,1250
chr2	151343988	.	A	AT	1095.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.4;MQRankSum=1.04;QD=20.67;ReadPosRankSum=-0.257;SOR=1.609	GT:AD:DP:GQ:PL	0/1:18,35:54:99:1124,0,504
chr2	151900390	.	TAAAAACAAAAAC	T	1758.77	PASS	AC=2;AF=1;AN=2;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=31.45;SOR=2.356	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1787,135,0
chr2	152111931	.	C	CA	726.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=31.6;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,23:32:92:682,92,0
chr2	152118338	.	G	GT	83.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.64;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=9.615;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=1.59;QD=4.41;ReadPosRankSum=-0.967;SOR=3.651	GT:AD:DP:GQ:PL	0/1:13,6:19:99:112,0,287
chr2	152296486	.	C	CA	113.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.141;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=1.51;SOR=1.002	GT:AD:DP:GQ:PL	0/1:7,7:28:99:101,0,146
chr2	152298562	.	T	TTTTTA	445.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.84;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.577;QD=34.29;ReadPosRankSum=-1.474;SOR=5.131	GT:AD:DP:GQ:PL	0/1:1,12:13:22:474,0,22
chr2	152314547	.	C	CA	1980.77	PASS	AC=2;AF=1;AN=2;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=31.44;SOR=6.901	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2009,189,0
chr2	152318713	.	TATC	T	3417.77	PASS	AC=2;AF=1;AN=2;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=26.45;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3446,235,0
chr2	152319162	.	A	AGT	391.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=2.494	GT:AD:DP:GQ:PL	1/1:0,11:11:36:420,36,0
chr2	152359276	.	AT	A	174.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=10.706;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.94;QD=2.01;ReadPosRankSum=1.52;SOR=0.207	GT:AD:DP:GQ:PL	0/1:66,21:102:99:203,0,1559
chr2	152360136	.	AT	A	148.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.81;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:177,18,0
chr2	152381168	.	CTT	C	545.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-0.511;QD=21.83;ReadPosRankSum=-0.406;SOR=1.528	GT:AD:DP:GQ:PL	0/1:8,17:49:99:571,0,122
chr2	152388415	.	AT	A	3364.77	PASS	AC=2;AF=1;AN=2;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=27.24;SOR=2.019	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3393,283,0
chr2	152396726	.	T	TA	357.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.43;QD=25.55;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,14:14:42:386,42,0
chr2	152402515	.	T	TA	890.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.449;QD=17.13;ReadPosRankSum=-0.519;SOR=1.473	GT:AD:DP:GQ:PL	0/1:12,40:82:87:862,0,87
chr2	152403071	.	C	CT	63.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-1.242;SOR=1.863	GT:AD:DP:GQ:PL	0/1:2,4:8:7:80,0,7
chr2	152424933	.	T	TA	883.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=2.516;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.568;QD=16.07;ReadPosRankSum=-0.291;SOR=0.428	GT:AD:DP:GQ:PL	0/1:16,39:72:99:912,0,181
chr2	152435699	.	CT	C	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.82;QD=30.39;SOR=1.329	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:1|1:152435699_CT_C:270,18,0
chr2	152473986	.	CA	C	50.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.42;ReadPosRankSum=0.342;SOR=0.069	GT:AD:DP:GQ:PL	0/1:14,7:22:79:79,0,507
chr2	152520535	.	AT	A	130.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=1.11;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,8:10:21:159,0,21
chr2	152573902	.	A	AGGC	4979.77	PASS	AC=2;AF=1;AN=2;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=33.24;SOR=2.036	GT:AD:DP:GQ:PL	1/1:0,109:109:99:5008,344,0
chr2	152684704	.	A	AC	462.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.96;ReadPosRankSum=0.78;SOR=1.201	GT:AD:DP:GQ:PL	0/1:9,20:29:99:491,0,168
chr2	152988610	.	C	CT	3770.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.94;ClippingRankSum=0;DP=285;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=2.2;QD=13.76;ReadPosRankSum=0.23;SOR=0.637	GT:AD:DP:GQ:PL	0/1:149,125:274:99:3799,0,4717
chr2	153001359	.	GAT	G	2909.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.5;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=9.004;MLEAC=1;MLEAF=0.5;MQ=60.59;MQRankSum=2.6;QD=20.49;ReadPosRankSum=0.379;SOR=1.442	GT:AD:DP:GQ:PL	0/1:63,79:142:99:2938,0,2366
chr2	153405770	.	G	GC	74.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
chr2	153415234	.	T	TG	1749.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.816;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=1.69;MLEAC=1;MLEAF=0.5;MQ=64.04;MQRankSum=6.26;QD=16.35;ReadPosRankSum=-1.588;SOR=0.938	GT:AD:DP:GQ:PL	0/1:45,62:107:99:1778,0,1077
chr2	153431964	.	CAA	C	38.96	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	1/1:1,2:3:4:65,4,0
chr2	153463984	.	T	TAC,TACAC	804.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.72;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.15;MQRankSum=0;QD=24.39;ReadPosRankSum=-1.436;SOR=2.242	GT:AD:DP:GQ:PL	1/2:4,16,13:33:99:833,244,251,277,0,409
chr2	153476066	.	G	GCCA	2264.77	PASS	AC=2;AF=1;AN=2;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.72;QD=31.32;SOR=1.893	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2293,156,0
chr2	153535751	.	TA	T	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.92;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.73;QD=2.66;ReadPosRankSum=-0.611;SOR=1.085	GT:AD:DP:GQ:PL	0/1:22,8:30:99:108,0,476
chr2	153572283	.	GTAAATTTCTCAGAAGACTTTTTCATTATT	G	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.38;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,78
chr2	153576264	.	GA	G	643.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.63;QD=26.77;SOR=4.294	GT:AD:DP:GQ:PL	1/1:0,15:17:54:671,54,0
chr2	153591845	.	T	TG	96.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.92;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.8;ReadPosRankSum=0.269;SOR=0.078	GT:AD:DP:GQ:PL	0/1:7,4:11:99:125,0,195
chr2	153591866	.	AG	A	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.83;ReadPosRankSum=1.07;SOR=2.215	GT:AD:DP:GQ:PL	0/1:5,2:7:48:48,0,147
chr2	155303495	.	G	GT	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:155303487_G_T:135,9,0
chr2	157183211	.	TC	T	1265.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=5.252;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.19;QD=17.58;ReadPosRankSum=0.924;SOR=0.293	GT:AD:DP:GQ:PL	0/1:29,43:72:99:1294,0,813
chr2	157332731	.	T	TAATCA	1562.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.228;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=8.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.01;ReadPosRankSum=-1.758;SOR=0.141	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1591,0,2166
chr2	157425502	.	C	CT	417.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=7.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.33;SOR=2.378	GT:AD:DP:GQ:PL	0/1:13,24:59:99:445,0,260
chr2	158152046	.	GA	G	238.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.29;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.094;SOR=2.093	GT:AD:DP:GQ:PL	0/1:5,15:20:48:267,0,48
chr2	158165415	.	C	CT	72.03	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.01;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:100,12,0
chr2	158275111	.	T	TA	886.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0;QD=14.08;ReadPosRankSum=-2.154;SOR=1.056	GT:AD:DP:GQ:PL	0/1:17,46:92:99:915,0,224
chr2	158291107	.	T	TAG	383.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.27;ReadPosRankSum=-1.497;SOR=0.668	GT:AD:DP:GQ:PL	0/1:6,15:25:99:412,0,169
chr2	158406514	.	CA	C	81.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=-1.593;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,8:10:5:109,0,5
chr2	158655883	.	C	CAA	339.88	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.32;ReadPosRankSum=0.124;SOR=1.609	GT:AD:DP:GQ:PL	1/1:1,11:14:7:359,7,0
chr2	159660645	.	TA	T	58.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr2	159663359	.	AAAT	A	14.46	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.23;ReadPosRankSum=-0.674;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,1:2:3:40,0,3
chr2	159682761	.	C	CT	252.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.04;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr2	159683022	.	T	TATATATATATATATATATATATATA	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	160007288	.	TA	T	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.431;QD=7.97;ReadPosRankSum=-0.876;SOR=0.16	GT:AD:DP:GQ:PL	0/1:3,6:9:47:100,0,47
chr2	160075886	.	G	GC	1775.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.11;ClippingRankSum=0;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.62;QD=11.38;ReadPosRankSum=-1.38;SOR=0.642	GT:AD:DP:GQ:PL	0/1:88,68:156:99:1804,0,2558
chr2	160132196	.	A	AC	437.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,16:16:48:466,48,0
chr2	160241998	.	C	CTT	117.98	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.6;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:13:146,13,0
chr2	160255665	.	T	TAA	103.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr2	160261729	.	AC	A	428.8	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.39;MQRankSum=-0.454;QD=17.87;ReadPosRankSum=0.419;SOR=1.329	GT:AD:DP:GQ:PGT:PID:PL	1/1:2,22:24:21:1|1:160261729_AC_A:457,21,0
chr2	160599447	.	CAAAA	C	468.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1.08;QD=18.03;ReadPosRankSum=-0.154;SOR=0.693	GT:AD:DP:GQ:PL	0/1:13,13:26:99:497,0,608
chr2	160605488	.	TC	T	286.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.9;SOR=2.67	GT:AD:DP:GQ:PL	1/1:0,12:12:35:315,35,0
chr2	160621354	.	G	GT	82.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.98;MQRankSum=0.319;QD=10.35;ReadPosRankSum=-1.242;SOR=1.863	GT:AD:DP:GQ:PL	0/1:2,6:8:23:111,0,23
chr2	160621412	.	C	CT	24.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.29;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0
chr2	160634564	.	ACC	A	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.29;ReadPosRankSum=0.842;SOR=2.303	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,164
chr2	160634582	.	TAATATC	T	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:73:78,0,73
chr2	160676445	.	A	AT	2751.77	PASS	AC=2;AF=1;AN=2;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.61;QD=28.37;SOR=3.189	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2780,294,0
chr2	160708923	.	GT	G	156.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.4;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.47;ReadPosRankSum=0.811;SOR=1.179	GT:AD:DP:GQ:PL	0/1:11,10:21:99:185,0,235
chr2	160708933	.	GT	G	145.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=-0.733;SOR=3.442	GT:AD:DP:GQ:PL	0/1:7,10:17:99:174,0,107
chr2	160832858	.	A	AAC	352.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,10:10:30:381,30,0
chr2	160834111	.	A	AT	81.03	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.26;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:109,12,0
chr2	160840370	.	AC	A	519.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.67;QD=32.49;SOR=5.67	GT:AD:DP:GQ:PL	1/1:0,16:16:48:548,48,0
chr2	160872989	.	GGT	G	478.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=32.43;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,12:12:36:507,36,0
chr2	160872996	.	GGA	G	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=-0.831;QD=2.85;ReadPosRankSum=0.545;SOR=0.368	GT:AD:DP:GQ:PL	0/1:12,3:15:71:71,0,402
chr2	160873294	.	T	TA	834.77	PASS	AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.6;QD=26.09;SOR=3.126	GT:AD:DP:GQ:PL	1/1:0,32:32:96:863,96,0
chr2	160958349	.	GA	G	1115.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.624;QD=19.92;ReadPosRankSum=-1.353;SOR=0.299	GT:AD:DP:GQ:PL	1/1:7,49:68:33:1086,33,0
chr2	160968743	.	CA	C	2647.77	PASS	AC=2;AF=1;AN=2;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;QD=24.78;SOR=3.521	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2676,217,0
chr2	161174740	.	TA	T	174.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.97;ReadPosRankSum=2.3;SOR=0.527	GT:AD:DP:GQ:PL	1/1:2,5:14:8:127,8,0
chr2	162224193	.	G	GT	1195.77	PASS	AC=2;AF=1;AN=2;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=28.47;SOR=0.788	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1224,126,0
chr2	162274607	.	A	ATGTG	142.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=32.94;ReadPosRankSum=-0.366;SOR=2.584	GT:AD:DP:GQ:PL	0/1:1,3:7:38:123,0,38
chr2	162729067	.	CA	C	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.497;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.97;ReadPosRankSum=-0.751;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,6:9:32:64,0,32
chr2	164466039	.	AT	A	6351.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;MQRankSum=0.609;QD=21.98;ReadPosRankSum=-0.65;SOR=0.67	GT:AD:DP:GQ:PL	1/1:11,278:291:99:6380,554,0
chr2	165349840	.	GT	G	126.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.429;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.5;MQ=61.13;MQRankSum=1.19;QD=7.92;ReadPosRankSum=0;SOR=2.093	GT:AD:DP:GQ:PL	0/1:8,8:16:99:155,0,177
chr2	165383686	.	AATATATATATATATAT	A	1059.77	PASS	AC=2;AF=1;AN=2;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=26.21;SOR=5.728	GT:AD:DP:GQ:PL	1/1:0,16:35:92:900,92,0
chr2	165586843	.	T	TA	35.03	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:13:63,0,13
chr2	165694012	.	C	CA	217.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=8.501;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.82;QD=2.72;ReadPosRankSum=0.6;SOR=0.16	GT:AD:DP:GQ:PL	0/1:61,19:80:99:246,0,1201
chr2	165698715	.	A	AG	44.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr2	165796248	.	AAC	A	116.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.68;ReadPosRankSum=-1.006;SOR=2.494	GT:AD:DP:GQ:PL	0/1:3,4:7:99:145,0,110
chr2	165809138	.	ATG	A	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.71;ReadPosRankSum=1.82;SOR=0.602	GT:AD:DP:GQ:PL	0/1:14,4:18:95:95,0,450
chr2	165811554	.	GA	G	226.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.12;ReadPosRankSum=-1.036;SOR=1.101	GT:AD:DP:GQ:PL	0/1:5,10:22:54:218,0,54
chr2	165996280	.	TA	T	184.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.77;SOR=0.387	GT:AD:DP:GQ:PL	0/1:7,11:18:99:213,0,206
chr2	166164215	.	CA	C	297.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=0.883;SOR=1.751	GT:AD:DP:GQ:PL	0/1:12,16:28:99:326,0,244
chr2	166221569	.	TG	T	210.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0;SOR=1.244	GT:AD:DP:GQ:PL	0/1:6,10:16:99:239,0,105
chr2	166221883	.	GTATC	G	221.03	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.58;ReadPosRankSum=1.47;SOR=2.584	GT:AD:DP:GQ:PL	0/1:1,6:7:12:249,0,12
chr2	166221949	.	G	GT	104.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.98;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:133,15,0
chr2	166236870	.	TG	T	99.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.431;QD=16.63;ReadPosRankSum=-0.253;SOR=1.414	GT:AD:DP:GQ:PL	0/1:2,4:6:61:128,0,61
chr2	166610902	.	CTTT	C	155.77	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=30.18;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,4:6:9:154,9,0
chr2	166610972	.	CA	C	253.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=21.15;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,12:12:36:282,36,0
chr2	166618073	.	AAAAC	A	331.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr2	166768174	.	A	AT	16.86	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.5;MQ=58.59;MQRankSum=-0.887;QD=2.11;ReadPosRankSum=-0.992;SOR=2.807	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,3:8:45:0|1:166768174_A_AT:45,0,230
chr2	166781242	.	T	TA	258.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=1.98;SOR=1.071	GT:AD:DP:GQ:PL	0/1:14,12:26:99:287,0,329
chr2	166802306	.	ACTGT	A	187.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.094;SOR=0.255	GT:AD:DP:GQ:PL	0/1:12,6:18:99:216,0,701
chr2	166810161	.	G	GCCCGCTCA	2226.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.74;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=4.68;MLEAC=2;MLEAF=1;MQ=61.48;MQRankSum=0.51;QD=32.12;ReadPosRankSum=1.55;SOR=1.447	GT:AD:DP:GQ:PL	1/1:1,46:47:99:2255,134,0
chr2	166810433	.	GT	G	294.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.85;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,8:8:24:323,24,0
chr2	166849154	.	T	TA	48.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	166892444	.	TAAA	T	756.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.62;ReadPosRankSum=1.29;SOR=1.656	GT:AD:DP:GQ:PL	0/1:16,19:50:99:785,0,1186
chr2	166895913	.	CTT	C	645.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0;QD=18.45;ReadPosRankSum=0.151;SOR=0.675	GT:AD:DP:GQ:PL	0/1:13,22:48:99:674,0,304
chr2	166897989	.	G	GA	427.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-1.528;SOR=0.593	GT:AD:DP:GQ:PL	0/1:14,21:49:99:456,0,220
chr2	166901897	.	AG	A	785.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.79;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=11.179;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.157;SOR=0.088	GT:AD:DP:GQ:PL	0/1:49,30:79:99:814,0,1481
chr2	166901988	.	AT	A	48.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.97;ReadPosRankSum=0;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:57:77,0,57
chr2	166905634	.	TACTTTACAGTGCAAAGTATTTCTTCATTATGAAGAAATGACATTAGATTAGATACAGTGCAAAGATACTTTAGAC	T	14.91	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.73;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:43:43,0,365
chr2	166909129	.	A	AT	52.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	167060980	.	GAAAC	G	1540.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=4.068;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=2.01;QD=21.4;ReadPosRankSum=-1.895;SOR=1.897	GT:AD:DP:GQ:PL	0/1:31,41:72:99:1569,0,1631
chr2	167085079	.	GTT	G	429.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.91;ReadPosRankSum=-0.462;SOR=0.317	GT:AD:DP:GQ:PL	0/1:12,12:24:99:458,0,446
chr2	167085141	.	CTT	C	1519.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.1;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.24;ReadPosRankSum=-1.326;SOR=0.721	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1548,0,1549
chr2	167138320	.	T	TA	893.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.509;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.923;QD=9.51;ReadPosRankSum=1.71;SOR=0.432	GT:AD:DP:GQ:PL	0/1:50,44:111:99:922,0,937
chr2	167138389	.	C	CT	267.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.63;SOR=1.371	GT:AD:DP:GQ:PL	0/1:14,11:25:99:296,0,422
chr2	167300262	.	GAC	G	229.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.15;ReadPosRankSum=-0.547;SOR=0.293	GT:AD:DP:GQ:PL	0/1:5,7:12:99:258,0,172
chr2	167313313	.	AAT	A	182.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=31.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,2:4:14:153,14,0
chr2	167760451	.	AG	A	1024.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.719;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.06;QD=16.01;ReadPosRankSum=-0.289;SOR=0.627	GT:AD:DP:GQ:PL	0/1:33,31:64:99:1053,0,1140
chr2	169103796	.	C	CGCCGGG	175.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=29.62;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr2	169104054	.	C	CCCGCCGCCGCCG,CCCGCCGCCGCCGCCGCCG	306.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=28.89;SOR=1.179	GT:AD:DP:GQ:PL	1/2:0,5,3:8:99:335,125,111,186,0,175
chr2	169487610	.	GT	G	405.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.41;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=1.71;SOR=1.824	GT:AD:DP:GQ:PL	0/1:6,22:28:75:434,0,75
chr2	169681278	.	T	TTTTGTTTG,TTTTGTTTGTTTG	940.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=61.16;QD=30.45;SOR=3.056	GT:AD:DP:GQ:PL	1/2:0,5,15:20:99:969,604,571,209,0,152
chr2	169707262	.	AAATTCTCTGG	A	609.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.33;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.62;MQRankSum=1.4;QD=19.06;ReadPosRankSum=-0.753;SOR=0.818	GT:AD:DP:GQ:PL	0/1:15,17:32:99:638,0,1534
chr2	169712115	.	C	CA	138.96	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=15.44;ReadPosRankSum=-0.589;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,8:9:5:166,5,0
chr2	169712148	.	C	CAA	45.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:19:74,0,19
chr2	169713084	.	T	TA	162.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.553;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.61;MQRankSum=-1.63;QD=7.08;ReadPosRankSum=0.577;SOR=0.836	GT:AD:DP:GQ:PL	0/1:13,10:28:99:191,0,247
chr2	169717179	.	T	TA	142.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.554;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,8:15:69:171,0,69
chr2	169727879	.	G	GA	541.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.52;QD=25.8;SOR=3.816	GT:AD:DP:GQ:PL	1/1:0,21:21:63:570,63,0
chr2	169728069	.	GAAA	G	1038.77	PASS	AC=2;AF=1;AN=2;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;QD=29.23;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,24:28:62:1028,62,0
chr2	169825247	.	AT	A	33.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=0.319;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:15:62,0,15
chr2	169853320	.	AT	A	316.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.548;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.8;ReadPosRankSum=-0.841;SOR=1.536	GT:AD:DP:GQ:PL	0/1:23,13:36:99:345,0,739
chr2	169994021	.	AAG	A	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.875;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=4.188;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.2;ReadPosRankSum=-1.309;SOR=0.069	GT:AD:DP:GQ:PL	0/1:30,8:38:99:150,0,943
chr2	169994159	.	CAA	C	33.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=16.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:60,6,0
chr2	170038235	.	CAGACTGCATTCTGAATTCTTTTCTG	C	1135.77	PASS	AC=2;AF=1;AN=2;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=30.47;SOR=5.058	GT:AD:DP:GQ:PL	1/1:0,23:25:82:1164,82,0
chr2	170062201	.	T	TA	182.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.3;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=15.993;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.33;QD=2.03;ReadPosRankSum=-2.298;SOR=3.611	GT:AD:DP:GQ:PL	0/1:70,20:111:99:211,0,1393
chr2	170112478	.	T	TA	48.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	170115855	.	TAAAA	T	287.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0.603;QD=35.32;ReadPosRankSum=0.871;SOR=3.611	GT:AD:DP:GQ:PL	0/1:1,7:12:90:296,0,90
chr2	170413524	.	CA	C	99.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=16.64;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:128,18,0
chr2	170417349	.	C	CT	13.99	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.33;ReadPosRankSum=-0.385;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:21:42,0,21
chr2	170460817	.	A	ATGGC	5133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0;DP=345;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=-0.893;QD=15.94;ReadPosRankSum=-2.247;SOR=0.807	GT:AD:DP:GQ:PL	0/1:178,144:322:99:5162,0,6401
chr2	170460837	.	GTT	G,GT	2078.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DP=259;ExcessHet=3.0103;FS=8.814;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.04;MQRankSum=0.327;QD=19.07;ReadPosRankSum=-0.16;SOR=0.093	GT:AD:DP:GQ:PL	1/2:15,58,36:175:99:2107,173,528,999,0,1007
chr2	170504672	.	CAAAAAAAAAAAAAAAA	C	166.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.24;MQRankSum=0;QD=16.68;ReadPosRankSum=2.1;SOR=1.508	GT:AD:DP:GQ:PL	0/1:5,5:10:99:195,0,604
chr2	170531679	.	A	AAT	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.687;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,198
chr2	170558293	.	AAAAAG	A	307.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=0.579;QD=19.24;ReadPosRankSum=1.58;SOR=0.275	GT:AD:DP:GQ:PL	0/1:7,9:16:99:336,0,273
chr2	170632960	.	C	CA	1421.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=5.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.51;ReadPosRankSum=0.98;SOR=0.802	GT:AD:DP:GQ:PL	1/1:4,54:67:79:1422,79,0
chr2	170633023	.	T	TA	1704.77	PASS	AC=2;AF=1;AN=2;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.98;SOR=1.814	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1733,141,0
chr2	170633103	.	GA	G	482.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.48;SOR=2.985	GT:AD:DP:GQ:PL	1/1:0,14:14:42:511,42,0
chr2	170677855	.	G	GT	410.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;MQRankSum=0.471;QD=21.62;ReadPosRankSum=-1.1;SOR=3.056	GT:AD:DP:GQ:PL	1/1:1,18:19:34:439,34,0
chr2	170732594	.	C	CTT	17.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-0.842;QD=3.57;ReadPosRankSum=-1.036;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:46:46,0,77
chr2	170783092	.	CAAAAACA	C	1350.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=37.17;SOR=5.486	GT:AD:DP:GQ:PL	1/1:0,31:31:94:1379,94,0
chr2	170784085	.	GT	G	79.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.94;ReadPosRankSum=1.38;SOR=3.59	GT:AD:DP:GQ:PL	0/1:1,3:6:7:69,0,7
chr2	170872104	.	G	GGTTTATACT	376.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.17;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,8:8:27:405,27,0
chr2	170917983	.	CT	C	1635.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0;DP=135;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.375;QD=17.97;ReadPosRankSum=0.862;SOR=1.077	GT:AD:DP:GQ:PL	0/1:11,80:104:4:1662,0,4
chr2	170930241	.	G	GA	285.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.98;SOR=3.442	GT:AD:DP:GQ:PL	1/1:0,11:11:33:314,33,0
chr2	171258312	.	C	CT	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.25;ReadPosRankSum=-0.248;SOR=0.693	GT:AD:DP:GQ:PL	0/1:7,4:14:53:53,0,143
chr2	171264091	.	T	TGCTCTGGATATGAAA	600.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,10:10:42:629,42,0
chr2	171356051	.	TTATTTA	T	339.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.44;ReadPosRankSum=-0.297;SOR=0.527	GT:AD:DP:GQ:PL	0/1:12,10:22:99:368,0,928
chr2	171508490	.	CA	C	886.77	PASS	AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.63;SOR=5.784	GT:AD:DP:GQ:PL	1/1:0,36:36:99:915,108,0
chr2	171705157	.	AT	A	4743.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DP=252;ExcessHet=3.0103;FS=1.194;MLEAC=2;MLEAF=1;MQ=60.21;MQRankSum=0.555;QD=21.37;ReadPosRankSum=1.62;SOR=0.523	GT:AD:DP:GQ:PL	1/1:13,209:234:99:4772,365,0
chr2	171850178	.	TAAA	T,TAAAAA	170.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=18.97;ReadPosRankSum=-0.589;SOR=1.609	GT:AD:DP:GQ:PL	1/2:1,4,4:9:88:199,88,153,125,0,162
chr2	171906469	.	GA	G	1525.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=4.513;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.26;QD=19.31;ReadPosRankSum=-0.693;SOR=0.351	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1554,0,1091
chr2	171913207	.	CAA	C	77.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=0.816;SOR=1.179	GT:AD:DP:GQ:PL	0/1:4,4:10:99:106,0,123
chr2	171974424	.	TACAC	T	526.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.07;ReadPosRankSum=-2.11;SOR=0.941	GT:AD:DP:GQ:PL	0/1:11,14:25:99:555,0,599
chr2	172182150	.	G	GT	36.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
chr2	172299859	.	T	TA	203.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.874;SOR=0.293	GT:AD:DP:GQ:PL	0/1:8,8:16:99:232,0,254
chr2	172305175	.	C	CT	308.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=6.076;MLEAC=1;MLEAF=0.5;MQ=61.51;MQRankSum=3.37;QD=4.68;ReadPosRankSum=0.394;SOR=0.223	GT:AD:DP:GQ:PL	0/1:47,19:74:99:337,0,1525
chr2	172314644	.	AT	A	821.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=7.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=1.6;SOR=0.096	GT:AD:DP:GQ:PL	0/1:17,43:62:99:850,0,251
chr2	172330133	.	TA	T	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=-1.383;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr2	172398371	.	C	CT	234.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-0.226;QD=15.65;ReadPosRankSum=-0.61;SOR=2.448	GT:AD:DP:GQ:PL	0/1:3,12:29:57:205,0,57
chr2	172569134	.	AT	A	229.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=0.966;SOR=0.693	GT:AD:DP:GQ:PL	0/1:18,14:36:99:258,0,340
chr2	172582111	.	T	TG	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=15.563;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=0;QD=3.73;ReadPosRankSum=-1.283;SOR=3.59	GT:AD:DP:GQ:PL	0/1:7,5:12:73:73,0,140
chr2	172582281	.	A	ATTAC	276.8	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:305,21,0
chr2	172582344	.	AAC	A	313.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=4.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.94;ReadPosRankSum=1.39;SOR=1.981	GT:AD:DP:GQ:PL	0/1:12,9:21:99:342,0,462
chr2	172693470	.	G	GCA	29.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:25:58,0,25
chr2	172712107	.	T	TG	94.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	173334161	.	T	TATGATTTAGTACC	1061.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.591;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.26;QD=23.59;ReadPosRankSum=-3.012;SOR=0.352	GT:AD:DP:GQ:PL	0/1:19,26:45:99:1090,0,2519
chr2	173339233	.	GTC	G	136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=-0.253;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,4:5:32:165,0,32
chr2	173340200	.	C	CA	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.433;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=-0.001;SOR=0.132	GT:AD:DP:GQ:PL	0/1:7,6:13:99:141,0,126
chr2	173369000	.	A	AT	722.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=0.156;QD=13.64;ReadPosRankSum=-0.406;SOR=0.566	GT:AD:DP:GQ:PL	0/1:30,23:55:99:751,0,942
chr2	173428562	.	CA	C	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.81;MQRankSum=-0.674;QD=4.21;ReadPosRankSum=-1.002;SOR=1.828	GT:AD:DP:GQ:PL	0/1:7,6:14:83:83,0,149
chr2	173429496	.	TTAGG	T	1608.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.202;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.38;QD=24.01;ReadPosRankSum=2.14;SOR=1.303	GT:AD:DP:GQ:PL	0/1:25,42:67:99:1637,0,1303
chr2	173435658	.	CAG	C	470.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-1.347;SOR=1.051	GT:AD:DP:GQ:PL	0/1:22,14:36:99:499,0,869
chr2	173450886	.	CA	C	55.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.05;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.98;ReadPosRankSum=-0.502;SOR=0.473	GT:AD:DP:GQ:PL	0/1:8,6:14:84:84,0,128
chr2	173600783	.	C	CG	757.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.44;SOR=0.874	GT:AD:DP:GQ:PL	1/1:0,22:22:66:786,66,0
chr2	173782975	.	CT	C	13.01	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.17;ReadPosRankSum=0.842;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,4:6:23:41,0,23
chr2	173793096	.	GA	G	3559.77	PASS	AC=2;AF=1;AN=2;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=37.47;SOR=6.568	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,81:81:99:1|1:173793096_GA_G:3588,244,0
chr2	173848200	.	C	CT	1242.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0;QD=9.34;ReadPosRankSum=1.12;SOR=0.693	GT:AD:DP:GQ:PL	0/1:68,65:171:99:1271,0,1282
chr2	173865976	.	G	GT	2143.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0;DP=214;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.781;SOR=0.788	GT:AD:DP:GQ:PL	0/1:105,103:208:99:2172,0,2022
chr2	174034280	.	TA	T	14.2	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.55;ReadPosRankSum=-0.319;SOR=2.788	GT:AD:DP:GQ:PL	0/1:1,3:4:13:42,0,13
chr2	174131511	.	T	TAAA	161.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=1.56;SOR=0.33	GT:AD:DP:GQ:PL	0/1:7,7:17:99:190,0,309
chr2	174230983	.	G	GT	894.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.56;SOR=1.885	GT:AD:DP:GQ:PL	1/1:0,35:35:99:923,105,0
chr2	174232452	.	A	AT	650.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.12;QD=9.57;ReadPosRankSum=-0.086;SOR=0.481	GT:AD:DP:GQ:PL	0/1:37,31:68:99:679,0,797
chr2	175006417	.	A	AT	323.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=24.91;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,13:13:39:352,39,0
chr2	175245627	.	TATC	T	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=0;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,152
chr2	175264627	.	CT	C	501.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=8.058;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=0.735;QD=13.2;ReadPosRankSum=-0.663;SOR=0.125	GT:AD:DP:GQ:PL	0/1:12,26:61:99:530,0,153
chr2	175324882	.	AT	A	129.28	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=6.41;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-0.732;QD=7.18;ReadPosRankSum=-1.062;SOR=3.912	GT:AD:DP:GQ:PL	0/1:8,10:35:99:148,0,163
chr2	175439681	.	T	TA	774.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.691;QD=11.23;ReadPosRankSum=-1.638;SOR=0.552	GT:AD:DP:GQ:PL	0/1:29,40:94:99:803,0,546
chr2	175614908	.	CAAA	C,CA	903.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=29.15;ReadPosRankSum=0.728;SOR=3.193	GT:AD:DP:GQ:PL	1/2:1,9,21:31:93:932,500,436,181,0,93
chr2	175622178	.	TG	T	821.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=34.24;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,24:24:72:850,72,0
chr2	175624107	.	GA	G	1650.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0;DP=178;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.907;QD=10.32;ReadPosRankSum=0.72;SOR=0.503	GT:AD:DP:GQ:PL	0/1:72,88:162:99:1679,0,1524
chr2	175689342	.	C	CTATA	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=-0.545;SOR=0.039	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,156
chr2	175712501	.	CAAAAA	C	1212.77	PASS	AC=1;AF=0.5;AN=2;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.78;QD=25.36;SOR=6.439	GT:AD:DP:GQ:PL	0/1:0,18:50:8:804,0,8
chr2	175939223	.	TA	T	69.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.37;ReadPosRankSum=-1.675;SOR=0.818	GT:AD:DP:GQ:PL	0/1:7,6:15:98:98,0,153
chr2	175976580	.	C	CAT	124.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.253;QD=24.96;ReadPosRankSum=0.524;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:21:153,0,21
chr2	176795003	.	AACACACACACACACACACACACAC	A,AACACACAC	750.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.42;QD=24.73;SOR=3.611	GT:AD:DP:GQ:PL	1/2:0,7,12:19:99:779,491,474,285,0,247
chr2	176804220	.	T	TAC	699.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=7.091;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.656;SOR=2.437	GT:AD:DP:GQ:PL	0/1:30,24:58:99:728,0,987
chr2	176860532	.	CTTTTTT	C	109.18	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:136,9,0
chr2	176959113	.	G	GCA	238.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.85;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=2.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=-0.286;SOR=0.18	GT:AD:DP:GQ:PL	0/1:14,12:35:99:267,0,418
chr2	176972912	.	AGG	A	89.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr2	176983598	.	CAAAACCAAAACA	C	258.8	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=66.83;QD=32.21;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr2	176988290	.	C	CGCA	1206.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.14;QD=10.68;ReadPosRankSum=-2.042;SOR=0.861	GT:AD:DP:GQ:PL	0/1:63,50:113:99:1235,0,2705
chr2	176995302	.	G	GCGCACC	294.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.908;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=6.818;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.56;ReadPosRankSum=0.084;SOR=0.039	GT:AD:DP:GQ:PL	0/1:4,8:12:99:323,0,249
chr2	176995902	.	C	CTA	90.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=-0.365;SOR=0.33	GT:AD:DP:GQ:PL	0/1:7,4:11:99:119,0,235
chr2	177037183	.	G	GTCT	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.29;ReadPosRankSum=0;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,4:6:94:162,0,94
chr2	177162843	.	A	AT	41.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.99;ReadPosRankSum=-0.992;SOR=0.16	GT:AD:DP:GQ:PL	0/1:3,4:9:59:70,0,59
chr2	178326476	.	C	CT	48.77	PASS	AC=1;AF=0.5;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=24.38;SOR=3.258	GT:AD:DP:GQ:PL	0/1:0,2:4:9:35,0,9
chr2	178764364	.	A	AAT	819.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=6.518	GT:AD:DP:GQ:PL	1/1:0,25:25:75:848,75,0
chr2	178986130	.	TACAC	T	324.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.56;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.65;ReadPosRankSum=0.735;SOR=0.693	GT:AD:DP:GQ:PL	0/1:9,6:18:99:353,0,470
chr2	179192867	.	CCTT	C	232.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=0.674;QD=16.63;ReadPosRankSum=-0.483;SOR=0.283	GT:AD:DP:GQ:PL	0/1:7,7:14:99:261,0,329
chr2	179260499	.	TAAA	T	339.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.505;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.89;ReadPosRankSum=0;SOR=1.519	GT:AD:DP:GQ:PL	0/1:4,7:28:99:368,0,200
chr2	179310085	.	G	GT	56.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.11;ReadPosRankSum=0.328;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,4:7:49:85,0,49
chr2	179312440	.	G	GTAC	288.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.4;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=0.253;QD=28.88;ReadPosRankSum=0;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,8:10:79:317,0,79
chr2	179321039	.	GA	G	32.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:14:61,0,14
chr2	179325575	.	C	CAA	150.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.54;ReadPosRankSum=0.239;SOR=1.863	GT:AD:DP:GQ:PL	0/1:2,5:16:81:147,0,81
chr2	179330468	.	TA	T	402.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=1.3;QD=9.82;ReadPosRankSum=0.25;SOR=0.487	GT:AD:DP:GQ:PL	0/1:18,23:41:99:431,0,329
chr2	179337628	.	GT	G	107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.33;MQRankSum=0;QD=10.78;ReadPosRankSum=1.44;SOR=0.25	GT:AD:DP:GQ:PL	0/1:5,5:10:99:136,0,174
chr2	179363807	.	A	AT	396.78	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;MQRankSum=0.514;QD=20.88;ReadPosRankSum=1.13;SOR=2.2	GT:AD:DP:GQ:PL	1/1:2,17:19:26:425,26,0
chr2	179407763	.	C	CT	458.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.715;ClippingRankSum=0;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.19;ReadPosRankSum=-0.376;SOR=0.682	GT:AD:DP:GQ:PL	0/1:105,39:187:99:487,0,2038
chr2	179460012	.	G	GA	37.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:11:65,0,11
chr2	179460214	.	AT	A	260.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DP=134;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.27;ReadPosRankSum=0.789;SOR=0.908	GT:AD:DP:GQ:PL	0/1:87,28:127:99:289,0,1938
chr2	179511767	.	GTA	G	45.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.084;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.16;ReadPosRankSum=0.191;SOR=0.693	GT:AD:DP:GQ:PL	0/1:8,3:11:74:74,0,239
chr2	179548695	.	AT	A	442.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.61;ReadPosRankSum=-0.742;SOR=0.718	GT:AD:DP:GQ:PL	0/1:60,36:127:99:471,0,1350
chr2	179561114	.	G	GT	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.863;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.25;ReadPosRankSum=0.099;SOR=1.112	GT:AD:DP:GQ:PL	0/1:7,4:11:64:64,0,127
chr2	179563643	.	TA	T	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.52;ReadPosRankSum=-0.973;SOR=0.25	GT:AD:DP:GQ:PL	0/1:39,14:66:99:162,0,847
chr2	179634376	.	GTA	G	1686.77	PASS	AC=2;AF=1;AN=2;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.81;QD=25.14;SOR=4.047	GT:AD:DP:GQ:PL	1/1:0,46:49:99:1715,146,0
chr2	179682520	.	T	TCCTC	50.56	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:6:77,6,0
chr2	179702577	.	A	AGG	1352.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=5.486	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1381,93,0
chr2	179721264	.	C	CCTCT	289.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.23;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=63.82;MQRankSum=0.875;QD=26.34;ReadPosRankSum=0.875;SOR=0.582	GT:AD:DP:GQ:PL	0/1:2,9:11:28:318,0,28
chr2	179743027	.	T	TTTTA	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.19;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	179982125	.	AAGAT	A	646.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.15;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr2	179988395	.	T	TA,TAA	928.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.476;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=4.597;MLEAC=1,1;MLEAF=0.5,0.5;MQ=61.09;MQRankSum=0.785;QD=19.76;ReadPosRankSum=1.19;SOR=3.014	GT:AD:DP:GQ:PL	1/2:4,34,9:51:89:957,146,89,594,0,636
chr2	179997177	.	AT	A	1316.77	PASS	AC=2;AF=1;AN=2;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.78;QD=26.87;SOR=4.047	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1345,147,0
chr2	180307879	.	TG	T	162.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.14;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:191,18,0
chr2	181925588	.	CTTTTTTTTT	C	1276.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.234;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=13.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.38;ReadPosRankSum=0.308;SOR=4.743	GT:AD:DP:GQ:PL	0/1:4,17:72:99:1050,0,488
chr2	181927310	.	AT	A	31.53	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.88;ReadPosRankSum=0;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,3:5:24:55,0,24
chr2	182340714	.	A	ACT	140.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=-2.758;SOR=0.18	GT:AD:DP:GQ:PL	0/1:10,5:15:99:169,0,397
chr2	182344846	.	G	GT	947.77	PASS	AC=2;AF=1;AN=2;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.46;QD=27.88;SOR=1.666	GT:AD:DP:GQ:PL	1/1:0,34:41:99:971,117,0
chr2	182399497	.	A	ATT	561.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.16;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=-0.873;SOR=0.536	GT:AD:DP:GQ:PL	0/1:20,18:56:99:590,0,592
chr2	182403792	.	A	AT	8555.77	PASS	AC=2;AF=1;AN=2;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=31.26;SOR=2.325	GT:AD:DP:GQ:PL	1/1:0,212:212:99:8584,649,0
chr2	182412633	.	G	GACACACACACACAC	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.623;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0;QD=3.08;ReadPosRankSum=-1.221;SOR=0.105	GT:AD:DP:GQ:PL	0/1:8,2:10:59:59,0,1229
chr2	182412723	.	C	CGT	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.53;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr2	182756568	.	G	GC	48.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	183066377	.	C	CA	265.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=5.768;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=-0.81;QD=6.04;ReadPosRankSum=-0.551;SOR=1.131	GT:AD:DP:GQ:PL	0/1:29,15:50:99:294,0,1126
chr2	183066385	.	A	AC	1228.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.5;MQ=60.73;MQRankSum=0.939;QD=21.56;ReadPosRankSum=1.02;SOR=0.665	GT:AD:DP:GQ:PGT:PID:PL	0/1:27,30:57:99:0|1:183066385_A_AC:1257,0,1086
chr2	183094507	.	CT	C	110.77	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=27.69;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,4:6:17:111,17,0
chr2	183129148	.	C	CA	691.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.316;SOR=0.593	GT:AD:DP:GQ:PL	0/1:31,32:63:99:720,0,629
chr2	183593451	.	AT	A	2937.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;MQRankSum=0.194;QD=24.28;ReadPosRankSum=0.988;SOR=1.819	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2966,336,0
chr2	183593882	.	A	AT	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=9.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.22;ReadPosRankSum=1.47;SOR=0.823	GT:AD:DP:GQ:PL	0/1:5,3:8:54:54,0,94
chr2	183594362	.	G	GA	239.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:268,24,0
chr2	183597061	.	GTT	G	26.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.46;ReadPosRankSum=0.431;SOR=0.307	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,2:6:55:0|1:183597061_GTT_G:55,0,133
chr2	183600806	.	T	TAAG	231.84	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.14;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:18:260,18,0
chr2	183622319	.	AATAAT	A	421.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr2	183993327	.	TA	T	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.22;ReadPosRankSum=-0.545;SOR=0.148	GT:AD:DP:GQ:PL	0/1:4,4:8:54:54,0,61
chr2	183995115	.	CT	C	337.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.85;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=0.545;QD=17.78;ReadPosRankSum=-0.834;SOR=0.726	GT:AD:DP:GQ:PL	0/1:4,15:39:45:313,0,45
chr2	183998366	.	CTT	C,CT	1347.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.55;MQRankSum=0.745;QD=16.85;ReadPosRankSum=-0.73;SOR=0.941	GT:AD:DP:GQ:PL	1/2:7,21,52:91:99:1376,774,1092,267,0,246
chr2	184022776	.	C	CATT	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.65;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	185463815	.	C	CCT	1207.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.11;QD=11.73;ReadPosRankSum=-0.473;SOR=0.843	GT:AD:DP:GQ:PL	0/1:57,46:105:99:1236,0,1843
chr2	185802211	.	C	CACA	570.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1;SOR=0.769	GT:AD:DP:GQ:PL	0/1:33,15:48:99:599,0,1515
chr2	186603605	.	A	AG	474.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.82;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=1.18;QD=16.37;ReadPosRankSum=0.495;SOR=0.27	GT:AD:DP:GQ:PL	0/1:11,18:29:99:503,0,260
chr2	186625645	.	TTTGA	T	196.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.857;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.818;SOR=1.23	GT:AD:DP:GQ:PL	0/1:9,6:15:99:225,0,488
chr2	186692859	.	CT	C	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.47;ReadPosRankSum=-1.128;SOR=0.18	GT:AD:DP:GQ:PL	0/1:20,9:33:99:100,0,461
chr2	187366253	.	CTG	C	349.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.98;ReadPosRankSum=-0.569;SOR=1.765	GT:AD:DP:GQ:PL	0/1:4,10:14:99:378,0,147
chr2	187369013	.	T	TG	297.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,10:10:30:326,30,0
chr2	187490405	.	T	TGTGTGTGA	518.56	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.26;MQRankSum=0;QD=32.41;ReadPosRankSum=1.75;SOR=2.494	GT:AD:DP:GQ:PL	0/1:5,11:24:99:539,0,141
chr2	187497868	.	C	CA	13.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.65;ReadPosRankSum=0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:1:39,0,1
chr2	187503358	.	C	CGTGTGT	53.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.73;ReadPosRankSum=-0.967;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,2:3:11:0|1:187503358_C_CGTGTGT:81,0,11
chr2	187529823	.	AT	A	592.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.339;SOR=0.354	GT:AD:DP:GQ:PL	0/1:26,34:85:99:621,0,456
chr2	187559029	.	A	ACAG	252.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.654;SOR=0.582	GT:AD:DP:GQ:PL	0/1:10,9:19:99:281,0,298
chr2	187559047	.	G	GCAA	238.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.395;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0;QD=12.57;ReadPosRankSum=-0.827;SOR=0.73	GT:AD:DP:GQ:PL	0/1:11,8:19:99:267,0,349
chr2	187702339	.	GTA	G	149.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.51;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=1.42;QD=9.36;ReadPosRankSum=0.218;SOR=1.085	GT:AD:DP:GQ:PL	0/1:10,6:16:99:178,0,326
chr2	189448931	.	TATTTAGCATTACA	T	3712.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.52;ClippingRankSum=0;DP=174;ExcessHet=3.0103;FS=5.592;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.27;QD=21.59;ReadPosRankSum=0.901;SOR=0.327	GT:AD:DP:GQ:PL	0/1:76,96:172:99:3741,0,2856
chr2	189859434	.	CT	C	552.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=0.9;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=1.59;QD=8.5;ReadPosRankSum=0.629;SOR=0.693	GT:AD:DP:GQ:PL	0/1:32,33:72:99:581,0,643
chr2	189860975	.	AGT	A	171.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.469;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.5;MQ=61.36;MQRankSum=-1.965;QD=10.1;ReadPosRankSum=1.82;SOR=1.555	GT:AD:DP:GQ:PL	0/1:11,6:18:99:200,0,318
chr2	189861029	.	T	TACACACAC	154.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.218;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.39;MQRankSum=0;QD=11.05;ReadPosRankSum=1.16;SOR=0.33	GT:AD:DP:GQ:PL	0/1:9,5:15:99:183,0,386
chr2	189861740	.	TATATATATATGAGACATATATATATGAGAC	T	683.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.42;QD=29.9;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:50:712,50,0
chr2	189910066	.	ATG	A	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.084;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.79;ReadPosRankSum=0;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,4:6:51:123,0,51
chr2	189923630	.	AT	A	1782.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;MQRankSum=0.34;QD=19.17;ReadPosRankSum=-0.504;SOR=0.598	GT:AD:DP:GQ:PL	1/1:9,84:105:71:1811,71,0
chr2	189928834	.	TG	T	682.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0.918;QD=15.52;ReadPosRankSum=1.85;SOR=0.651	GT:AD:DP:GQ:PL	0/1:19,25:44:99:711,0,620
chr2	189928999	.	C	CAAGTA	196.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr2	189943121	.	GA	G	306.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=1.12;SOR=4.073	GT:AD:DP:GQ:PL	0/1:5,18:23:39:335,0,39
chr2	189953285	.	A	AAATG	556.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,13:13:39:585,39,0
chr2	189968808	.	TA	T	175.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.792;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.13;ReadPosRankSum=0;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,6:7:16:204,0,16
chr2	190319966	.	C	CA	166.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.94;MQRankSum=1.57;QD=8.34;ReadPosRankSum=0.432;SOR=0.223	GT:AD:DP:GQ:PL	0/1:11,9:23:99:195,0,180
chr2	190448540	.	CACACACACATAT	C	105.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=0.572;QD=2.71;ReadPosRankSum=-0.731;SOR=0.582	GT:AD:DP:GQ:PL	0/1:31,8:39:99:134,0,822
chr2	190448542	.	CACACACATAT	C	615.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=4.42;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=-0.709;QD=16.2;ReadPosRankSum=1.44;SOR=0.307	GT:AD:DP:GQ:PL	0/1:14,24:38:99:644,0,372
chr2	190541842	.	AT	A	300.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-0.158;QD=16.71;ReadPosRankSum=0.12;SOR=0.582	GT:AD:DP:GQ:PL	1/1:2,16:22:20:318,20,0
chr2	190570001	.	TA	T	1353.77	PASS	AC=2;AF=1;AN=2;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.61;QD=23.75;SOR=4.768	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1382,171,0
chr2	190603201	.	T	TA	514.77	PASS	AC=2;AF=1;AN=2;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.4;SOR=6.273	GT:AD:DP:GQ:PL	1/1:0,22:22:66:543,66,0
chr2	190611473	.	CGATACTAAGCA	C	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:67:78,0,67
chr2	190615176	.	AG	A	540.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.59;SOR=5.283	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,13:13:39:1|1:190615176_AG_A:569,39,0
chr2	190926859	.	GT	G	668.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.6;ReadPosRankSum=2;SOR=1.179	GT:AD:DP:GQ:PL	0/1:15,23:38:99:697,0,396
chr2	191116438	.	C	CAT	383.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.94;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.01;QD=19.19;ReadPosRankSum=-0.419;SOR=2.093	GT:AD:DP:GQ:PL	0/1:9,11:20:99:412,0,324
chr2	191175639	.	GT	G	841.77	PASS	AC=2;AF=1;AN=2;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=30.06;SOR=3.767	GT:AD:DP:GQ:PL	1/1:0,28:28:84:870,84,0
chr2	191334459	.	A	ATTTTTAT	844.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.41;MQRankSum=0.611;QD=26.4;ReadPosRankSum=1.01;SOR=1.445	GT:AD:DP:GQ:PL	1/1:2,30:32:59:873,59,0
chr2	191354658	.	C	CCT	3591.77	PASS	AC=2;AF=1;AN=2;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=28.25;SOR=3.994	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3620,249,0
chr2	191537793	.	GT	G	367.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.3;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.87;QD=6.03;ReadPosRankSum=-1.598;SOR=0.62	GT:AD:DP:GQ:PL	0/1:32,29:77:99:396,0,750
chr2	191552121	.	CAA	C	135.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=-2.084;SOR=1.473	GT:AD:DP:GQ:PL	0/1:2,7:13:99:121,0,126
chr2	191777768	.	AT	A	455.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;MQRankSum=0.426;QD=19.82;ReadPosRankSum=0.453;SOR=1.528	GT:AD:DP:GQ:PL	1/1:1,22:23:42:484,42,0
chr2	191848793	.	T	TA	15.17	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.06;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:13:43,0,13
chr2	191859654	.	AT	A	51.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.72;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.88;MQRankSum=-0.792;QD=7.4;ReadPosRankSum=2.19;SOR=0.495	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,3:7:80:0|1:191859654_AT_A:80,0,136
chr2	191859656	.	ATAT	A	51.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.72;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.88;MQRankSum=-0.792;QD=7.4;ReadPosRankSum=2.19;SOR=0.495	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,3:7:80:0|1:191859654_AT_A:80,0,136
chr2	191872966	.	G	GA	56.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.1;ReadPosRankSum=-1.1;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,4:8:75:85,0,75
chr2	191875368	.	TTC	T	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=-0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:35:123,0,35
chr2	191899148	.	CA	C	66.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.722;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.69;MQRankSum=0.132;QD=3.71;ReadPosRankSum=0.891;SOR=0.26	GT:AD:DP:GQ:PL	0/1:10,8:22:95:95,0,229
chr2	192161058	.	G	GT	394.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=24.67;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:48:423,48,0
chr2	192225477	.	G	GTGTTGT,GTGTTGTTGT	2429.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.17;QD=25.68;SOR=2.303	GT:AD:DP:GQ:PL	1/2:0,25,27:58:99:2458,1088,937,1002,0,870
chr2	192548841	.	TA	T	24.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.96;ReadPosRankSum=-1.645;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:32:53,0,32
chr2	192815349	.	AGAAGTT	A	736.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.63;QD=28.47;SOR=5.784	GT:AD:DP:GQ:PL	1/1:0,17:17:51:765,51,0
chr2	192818609	.	A	ATTTTTTTTT	1143.77	PASS	AC=2;AF=1;AN=2;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.12;QD=30.06;SOR=4.235	GT:AD:DP:GQ:PL	1/1:0,18:35:68:993,68,0
chr2	192864151	.	T	TG	168.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	196581295	.	T	TGTCTAG	1471.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.14;QD=18.17;ReadPosRankSum=-0.851;SOR=0.29	GT:AD:DP:GQ:PL	0/1:45,36:81:99:1500,0,3469
chr2	196602614	.	G	GAAAT	1056.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.17;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=8.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=-0.798;SOR=1.863	GT:AD:DP:GQ:PL	0/1:42,28:70:99:1085,0,2239
chr2	196605447	.	TATAAA	T	692.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=0.75;QD=26.64;ReadPosRankSum=-1.424;SOR=1.697	GT:AD:DP:GQ:PL	0/1:8,18:26:99:721,0,480
chr2	196746381	.	T	TA	318.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.92;ReadPosRankSum=-1.677;SOR=2.093	GT:AD:DP:GQ:PL	0/1:8,8:16:99:347,0,270
chr2	196753366	.	GAT	G	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.65;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=0.792;QD=13.63;ReadPosRankSum=0.978;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,6:14:99:0|1:196753366_GAT_G:219,0,306
chr2	196756535	.	GAA	G,GA	863.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.26;MQRankSum=0.38;QD=21.59;ReadPosRankSum=0.411;SOR=0.662	GT:AD:DP:GQ:PL	1/2:3,19,18:40:99:892,330,390,395,0,347
chr2	196762491	.	TA	T	331.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-1.917;SOR=0.631	GT:AD:DP:GQ:PL	0/1:13,19:48:99:360,0,248
chr2	197105022	.	T	TA	70.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.42;ReadPosRankSum=-0.326;SOR=0.34	GT:AD:DP:GQ:PL	0/1:10,6:16:99:99,0,166
chr2	197122804	.	AG	A	154.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.81;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:183,18,0
chr2	197136174	.	A	AT	101.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.38;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:130,15,0
chr2	197584489	.	C	CA	211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.18;ReadPosRankSum=0.825;SOR=1.085	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,6:10:99:0|1:197584489_C_CA:240,0,197
chr2	197643854	.	CT	C	75.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.61;ReadPosRankSum=-1.139;SOR=1.609	GT:AD:DP:GQ:PL	0/1:12,9:28:99:104,0,276
chr2	197709173	.	T	TA	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.32;ReadPosRankSum=1.14;SOR=0.169	GT:AD:DP:GQ:PL	0/1:13,5:18:70:70,0,249
chr2	197792148	.	A	AC	150.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.65;MQRankSum=0;QD=8.38;ReadPosRankSum=0.763;SOR=1.493	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,12:18:61:0|1:197792148_A_AC:179,0,61
chr2	197792152	.	A	AAC	1029.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.65;QD=28.59;SOR=5.892	GT:AD:DP:GQ:PL	1/1:0,12:18:77:997,77,0
chr2	197854233	.	T	TAC	959.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.53;MQRankSum=0.774;QD=24.61;ReadPosRankSum=0.278;SOR=0.804	GT:AD:DP:GQ:PL	0/1:8,31:39:99:988,0,242
chr2	197872727	.	T	TTCTC	1376.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.57;QD=26.84;SOR=6.932	GT:AD:DP:GQ:PL	1/1:0,31:31:96:1405,96,0
chr2	197943693	.	T	TTGTGTG	195.9	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.97;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr2	197953372	.	TAAGTC	T	3439.77	PASS	AC=2;AF=1;AN=2;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=33.53;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3468,235,0
chr2	198257299	.	G	GGC	90.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.13;ReadPosRankSum=0.189;SOR=2.8	GT:AD:DP:GQ:PL	0/1:3,3:6:77:119,0,77
chr2	198540312	.	C	CAAAAAAA	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.69;ReadPosRankSum=0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:30:151,0,30
chr2	198572076	.	A	ATTC	511.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,12:12:36:540,36,0
chr2	199011927	.	A	AGTGT	63.56	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	200873144	.	AATACAAAAAAAACTTG	A	620.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.9;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.92;ReadPosRankSum=0.198;SOR=0.722	GT:AD:DP:GQ:PL	0/1:22,17:39:99:649,0,1053
chr2	201280996	.	CA	C	115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1;QD=3.4;ReadPosRankSum=-1.002;SOR=1.201	GT:AD:DP:GQ:PL	0/1:23,11:48:99:144,0,483
chr2	201440421	.	T	TCTA	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	201470233	.	ATTTT	A	4192.77	PASS	AC=2;AF=1;AN=2;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.08;SOR=2.04	GT:AD:DP:GQ:PL	1/1:0,90:102:99:4221,305,0
chr2	201473457	.	A	AC	102.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.51;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr2	201718402	.	GA	G	12.16	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.04;ReadPosRankSum=0.319;SOR=0.916	GT:AD:DP:GQ:PL	1/1:1,3:4:1:37,1,0
chr2	201719258	.	CA	C	336.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=6.621;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.804;QD=7.17;ReadPosRankSum=0.777;SOR=0.108	GT:AD:DP:GQ:PL	0/1:22,25:53:99:365,0,436
chr2	201752102	.	CAA	C	16.86	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.37;ReadPosRankSum=-0.524;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:45:45,0,65
chr2	201778717	.	T	TA	264.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=0.813;SOR=0.741	GT:AD:DP:GQ:PL	0/1:13,14:29:99:293,0,193
chr2	201881948	.	G	GT	69.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.47;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.25;ReadPosRankSum=-0.877;SOR=0.34	GT:AD:DP:GQ:PL	0/1:22,9:36:98:98,0,450
chr2	202006425	.	AGT	A	107.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr2	202137781	.	C	CT	198.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.047;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=1.93;SOR=2.127	GT:AD:DP:GQ:PL	0/1:17,13:46:99:227,0,320
chr2	202139739	.	CT	C	142.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.796;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.29;ReadPosRankSum=0.861;SOR=0.941	GT:AD:DP:GQ:PL	0/1:16,11:36:99:171,0,351
chr2	202215409	.	C	CAAAACAAAACAAAACAA	427.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=8.316;MLEAC=1;MLEAF=0.5;MQ=58.84;MQRankSum=-1.703;QD=21.39;ReadPosRankSum=-1.469;SOR=0.032	GT:AD:DP:GQ:PL	0/1:12,8:20:99:456,0,572
chr2	202245944	.	TAA	T	1609.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.26;SOR=2.012	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,37:37:99:1|1:202245944_TAA_T:1638,115,0
chr2	202254288	.	A	AC	3869.77	PASS	AC=2;AF=1;AN=2;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.64;QD=30.87;SOR=3.212	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3898,295,0
chr2	202262684	.	ATC	A	266.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=28.79;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:295,21,0
chr2	202272482	.	G	GTT	84.77	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=27.4;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,2:4:9:79,9,0
chr2	202325632	.	G	GT,GTT	522.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.22;MQRankSum=0.552;QD=15.38;ReadPosRankSum=-1.088;SOR=0.569	GT:AD:DP:GQ:PL	1/2:7,17,10:37:99:551,145,149,203,0,299
chr2	202344179	.	GT	G	1441.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;MQRankSum=0.317;QD=22.18;ReadPosRankSum=2.03;SOR=0.354	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1470,141,0
chr2	202357842	.	G	GT	747.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.57;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=9.599;MLEAC=1;MLEAF=0.5;MQ=60.6;MQRankSum=2.38;QD=10.1;ReadPosRankSum=1.06;SOR=1.283	GT:AD:DP:GQ:PL	0/1:38,36:74:99:776,0,778
chr2	202402250	.	AAC	A	1775.77	PASS	AC=2;AF=1;AN=2;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=3.003	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1804,124,0
chr2	202430428	.	AT	A,ATT	704.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=1.403;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.41;MQRankSum=0.804;QD=12.15;ReadPosRankSum=0.093;SOR=0.487	GT:AD:DP:GQ:PL	1/2:12,28,18:92:99:733,168,392,563,0,1031
chr2	202439757	.	CA	C	12.13	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.43;ReadPosRankSum=-1.645;SOR=0.859	GT:AD:DP:GQ:PL	0/1:2,3:5:18:40,0,18
chr2	202484003	.	G	GC	299.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=33.31;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:27:328,27,0
chr2	202525943	.	C	CT	19.33	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.83;ReadPosRankSum=0.319;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:10:47,0,10
chr2	202528830	.	A	AT	2164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.871;ClippingRankSum=0;DP=189;ExcessHet=3.0103;FS=4.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.707;SOR=0.413	GT:AD:DP:GQ:PL	0/1:84,92:176:99:2193,0,1793
chr2	202534280	.	AATGACTATCACACTACT	A	287.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=2.584	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,7:7:21:1|1:202534280_AATGACTATCACACTACT_A:316,21,0
chr2	202534303	.	TATAGGAAGAGCTTAA	T	319.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.04;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,8:8:24:1|1:202534280_AATGACTATCACACTACT_A:348,24,0
chr2	202574906	.	A	AT	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.15;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.86;ReadPosRankSum=0.231;SOR=1.609	GT:AD:DP:GQ:PL	0/1:5,4:9:81:81,0,100
chr2	202592026	.	CCAGGA	C	980.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.97;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=10.264;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.22;QD=15.09;ReadPosRankSum=0.068;SOR=2.039	GT:AD:DP:GQ:PL	0/1:38,27:65:99:1009,0,2534
chr2	202698422	.	ATCT	A	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=0;QD=5.27;ReadPosRankSum=-0.318;SOR=0.976	GT:AD:DP:GQ:PL	0/1:6,8:14:99:102,0,182
chr2	202962310	.	CT	C	489.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=61.01;MQRankSum=1.12;QD=13.99;ReadPosRankSum=0.223;SOR=1.556	GT:AD:DP:GQ:PL	0/1:8,27:45:74:518,0,74
chr2	203003066	.	G	GGTGT	647.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.16;QD=17.05;ReadPosRankSum=0.176;SOR=1.371	GT:AD:DP:GQ:PL	0/1:21,17:38:99:676,0,1054
chr2	203059214	.	A	AT	402.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.85;SOR=3.126	GT:AD:DP:GQ:PL	1/1:0,15:15:45:431,45,0
chr2	203059302	.	G	GTCCCGTTCTCAATCCAACAGTCTCCTGAACTGGGATCCTGCCCT	285.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:21:314,21,0
chr2	203139738	.	A	AC	345.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.58;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,10:10:30:374,30,0
chr2	203155015	.	GT	G	620.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=1.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=1.75;SOR=1.014	GT:AD:DP:GQ:PL	0/1:38,27:65:99:649,0,1019
chr2	203160786	.	A	AT	21.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.27;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:1:47,0,1
chr2	203378398	.	CT	C	520.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.33;ReadPosRankSum=-0.474;SOR=0.5	GT:AD:DP:GQ:PL	0/1:39,32:71:99:549,0,919
chr2	203384776	.	C	CT,CTT	1342.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=4.732;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.14;MQRankSum=0.485;QD=18.91;ReadPosRankSum=1.23;SOR=1.981	GT:AD:DP:GQ:PL	1/2:13,28,30:77:99:1371,532,590,325,0,526
chr2	203395392	.	CTCT	C	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=-0.7;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,256
chr2	203499717	.	AGCGGCG	A	83.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.37;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.414;SOR=2.303	GT:AD:DP:GQ:PL	0/1:5,3:8:99:112,0,166
chr2	203644529	.	T	TG	136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.35;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,4:5:36:0|1:203644529_T_TG:165,0,36
chr2	203651278	.	CA	C	76.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.06;MQRankSum=-0.664;QD=5.91;ReadPosRankSum=1.19;SOR=0.569	GT:AD:DP:GQ:PL	0/1:7,6:13:99:105,0,130
chr2	203651475	.	ATT	A	907.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=4.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.46;ReadPosRankSum=-1.191;SOR=1.332	GT:AD:DP:GQ:PL	0/1:20,32:69:99:936,0,660
chr2	203661855	.	TTGTGTGTGTGTG	T	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=57.39;MQRankSum=0;QD=17.59;ReadPosRankSum=0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
chr2	203676382	.	C	CA	48.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.043;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=3.757;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=0;QD=3.48;ReadPosRankSum=-2.157;SOR=2.303	GT:AD:DP:GQ:PL	0/1:8,6:19:77:77,0,143
chr2	203686234	.	GTTTCC	G	1702.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.52;ReadPosRankSum=-0.172;SOR=1.284	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1731,0,2472
chr2	203748544	.	A	AT,ATT	631.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=58.31;QD=25.27;SOR=5.058	GT:AD:DP:GQ:PL	1/2:0,15,10:25:99:660,246,175,318,0,272
chr2	203749392	.	C	CTTT	140.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.13;QD=34.74;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	203761156	.	TA	T	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=-0.328;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,4:7:81:122,0,81
chr2	203806437	.	GTTAATTTT	G	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=1.15;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:89:123,0,89
chr2	203817257	.	A	AT	756.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DP=95;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0;QD=9.83;ReadPosRankSum=0.297;SOR=0.828	GT:AD:DP:GQ:PL	0/1:38,39:83:99:785,0,659
chr2	203973132	.	GT	G	12.05	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.01;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,2:4:40:1|0:203973119_GT_G:40,0,78
chr2	204002713	.	CA	C	279.79	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.97;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,8:8:23:1|1:204002713_CA_C:308,23,0
chr2	204036545	.	C	CT	321.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=6.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.867;SOR=3.788	GT:AD:DP:GQ:PL	0/1:7,16:29:91:350,0,91
chr2	204054882	.	TACACACACACACACACAC	T,TAC	521.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=29.24;SOR=5.421	GT:AD:DP:GQ:PL	1/2:0,8,6:14:99:550,185,145,180,0,141
chr2	204111398	.	GTTAA	G	2126.77	PASS	AC=2;AF=1;AN=2;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=34.09;SOR=5.507	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,48:48:99:1|1:204111394_T_C:2155,148,0
chr2	204137273	.	C	CAA	130.77	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=26.15;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,5:7:16:141,16,0
chr2	204216255	.	G	GT	339.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.24;ReadPosRankSum=-0.403;SOR=1.23	GT:AD:DP:GQ:PL	1/1:3,13:21:8:312,8,0
chr2	204240891	.	TC	T	2072.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DP=202;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=2.43;QD=10.58;ReadPosRankSum=-0.662;SOR=1.091	GT:AD:DP:GQ:PL	0/1:116,80:196:99:2101,0,3947
chr2	204260171	.	T	TACACACACAC	63.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.16;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	204824178	.	A	AGT	551.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.79;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.62;MQRankSum=1.37;QD=20.44;ReadPosRankSum=-0.883;SOR=1.685	GT:AD:DP:GQ:PL	0/1:7,20:30:99:580,0,192
chr2	205978113	.	CA	C	1268.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.82;ReadPosRankSum=-1.218;SOR=0.237	GT:AD:DP:GQ:PL	0/1:30,34:64:99:1297,0,1196
chr2	205978117	.	G	GGTGT	379.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.879;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=-0.708;QD=6.33;ReadPosRankSum=1.67;SOR=1.062	GT:AD:DP:GQ:PL	0/1:44,16:68:99:408,0,1727
chr2	205978118	.	GTGT	G	1213.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.355;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.35;QD=18.67;ReadPosRankSum=-1.216;SOR=0.641	GT:AD:DP:GQ:PL	0/1:32,33:69:99:1242,0,1234
chr2	206041366	.	TAA	T	137.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.25;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.417;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,7:19:99:166,0,180
chr2	206548279	.	AGT	A	104.03	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.01;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr2	206608464	.	T	TTTTG	589.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.7;QD=30.11;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,14:14:42:618,42,0
chr2	206630073	.	A	AAC	291.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=0.959;QD=15.36;ReadPosRankSum=-0.165;SOR=1.022	GT:AD:DP:GQ:PL	0/1:8,11:19:99:320,0,230
chr2	206631601	.	TG	T	1007.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.71;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.18;QD=10.28;ReadPosRankSum=-0.571;SOR=0.323	GT:AD:DP:GQ:PL	0/1:56,42:98:99:1036,0,1473
chr2	206911191	.	C	CA	742.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.707;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=12.43;MLEAC=2;MLEAF=1;MQ=60.36;MQRankSum=0.216;QD=23.21;ReadPosRankSum=0.035;SOR=2.515	GT:AD:DP:GQ:PL	1/1:2,30:36:57:769,57,0
chr2	207003438	.	TA	T	174.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.843;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.623;QD=11.65;ReadPosRankSum=0.565;SOR=0.223	GT:AD:DP:GQ:PL	0/1:7,8:15:99:203,0,179
chr2	207008675	.	C	CT	587.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.429;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.5;MQ=60.87;MQRankSum=1.77;QD=16.79;ReadPosRankSum=-0.512;SOR=0.275	GT:AD:DP:GQ:PL	0/1:17,18:35:99:616,0,499
chr2	207014339	.	G	GAC	227.84	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:18:256,18,0
chr2	207014657	.	TAAA	T	462.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.67;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=33.06;ReadPosRankSum=0.609;SOR=1.23	GT:AD:DP:GQ:PL	0/1:5,9:34:99:462,0,130
chr2	207014747	.	T	TTCTATCTA,TTCTATCTATCTA	267.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.48;QD=31.65;SOR=2.303	GT:AD:DP:GQ:PL	1/2:0,3,3:6:99:296,128,117,129,0,117
chr2	207024886	.	G	GC	73.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:100,9,0
chr2	207027407	.	C	CT	1058.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.88;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=-2.302;SOR=0.678	GT:AD:DP:GQ:PL	0/1:46,32:78:99:1087,0,1621
chr2	207452151	.	GT	G	315.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.18;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-0.859;SOR=0.76	GT:AD:DP:GQ:PL	0/1:17,18:35:99:344,0,352
chr2	207472606	.	G	GT	714.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=7.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.579;SOR=2.434	GT:AD:DP:GQ:PL	0/1:34,34:74:99:743,0,566
chr2	207472683	.	C	CTA	3276.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.61;ReadPosRankSum=-0.071;SOR=0.714	GT:AD:DP:GQ:PL	0/1:75,84:159:99:3305,0,2850
chr2	207629821	.	T	TGCAA	262.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.671;SOR=1.371	GT:AD:DP:GQ:PL	0/1:15,7:22:99:291,0,606
chr2	207632364	.	C	CTAGT	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.9;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=0;SOR=3.258	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,237
chr2	207653455	.	C	CA	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.2;ReadPosRankSum=-0.786;SOR=0.275	GT:AD:DP:GQ:PL	0/1:7,7:16:52:129,0,52
chr2	207945785	.	A	ATGTG	456.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.21;ReadPosRankSum=-1.472;SOR=2.303	GT:AD:DP:GQ:PL	0/1:1,12:13:16:485,0,16
chr2	207998878	.	A	ATTTTT	1473.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.283;QD=31.48;ReadPosRankSum=0.545;SOR=2.753	GT:AD:DP:GQ:PL	1/1:1,15:51:67:1322,67,0
chr2	208031663	.	G	GCGCCGC	292.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.78;ReadPosRankSum=1.53;SOR=1.402	GT:AD:DP:GQ:PL	0/1:1,7:8:51:321,0,51
chr2	208579036	.	CTTT	C	714.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=4.09;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-0.345;QD=29.79;ReadPosRankSum=-0.757;SOR=0.734	GT:AD:DP:GQ:PL	0/1:6,18:41:99:743,0,159
chr2	208606875	.	CAA	C	453.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.91;ReadPosRankSum=1.16;SOR=0.278	GT:AD:DP:GQ:PL	0/1:9,15:47:99:482,0,370
chr2	208865712	.	G	GA	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.75;ReadPosRankSum=-0.092;SOR=1.284	GT:AD:DP:GQ:PL	0/1:14,7:28:99:107,0,273
chr2	209030330	.	G	GT	311.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=25.98;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,12:14:42:331,42,0
chr2	209049829	.	T	TC	603.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.47;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=4.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=-1.308;SOR=0.278	GT:AD:DP:GQ:PL	0/1:37,35:72:99:632,0,1412
chr2	209101905	.	GA	G	550.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;MQRankSum=0.4;QD=21.18;ReadPosRankSum=1.07;SOR=1.402	GT:AD:DP:GQ:PL	1/1:1,25:26:50:579,50,0
chr2	209102117	.	A	ACT	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	209110006	.	T	TA	303.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=1.91;QD=6.9;ReadPosRankSum=-1.501;SOR=0.266	GT:AD:DP:GQ:PL	0/1:25,19:47:99:332,0,474
chr2	209110270	.	C	CTTT	189.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.55;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.09;ReadPosRankSum=-0.641;SOR=1.402	GT:AD:DP:GQ:PL	0/1:4,5:11:45:218,0,45
chr2	209115978	.	C	CT	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.15;ReadPosRankSum=-1.036;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:31:64,0,31
chr2	209180234	.	C	CTTTG	1386.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.65;QD=22.16;SOR=6.994	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1415,96,0
chr2	209182499	.	T	TA	368.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.59;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=2.5;SOR=1.051	GT:AD:DP:GQ:PL	0/1:23,20:43:99:397,0,439
chr2	209182677	.	CAGTTCAGCAGTGA	C	2228.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0;DP=165;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.63;ReadPosRankSum=0.529;SOR=0.574	GT:AD:DP:GQ:PL	0/1:75,59:134:99:2257,0,4414
chr2	209195472	.	G	GT	87.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.99;ReadPosRankSum=0.925;SOR=0.283	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,8:22:99:0|1:209195472_G_GT:116,0,257
chr2	209195491	.	G	GAGA	805.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=5.994	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,19:19:57:1|1:209195472_G_GT:834,57,0
chr2	209207518	.	C	CTT	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.15;MQRankSum=0.976;QD=14.67;ReadPosRankSum=1.41;SOR=0.387	GT:AD:DP:GQ:PL	0/1:7,6:18:99:219,0,136
chr2	209345944	.	CTT	C,CT	671.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.06;MQRankSum=-0.712;QD=14.29;ReadPosRankSum=-2.072;SOR=0.735	GT:AD:DP:GQ:PL	1/2:7,16,24:61:99:700,219,599,146,0,228
chr2	209346020	.	T	TGCAACCTC	863.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.27;QD=27.76;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,18:18:60:892,60,0
chr2	209353656	.	GT	G	661.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.844;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.974;QD=9.19;ReadPosRankSum=1.38;SOR=0.811	GT:AD:DP:GQ:PL	0/1:34,38:72:99:690,0,660
chr2	210594717	.	C	CT	1071.77	PASS	AC=2;AF=1;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=28.2;SOR=1.493	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1100,114,0
chr2	210889076	.	A	ATTAT	601.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.43;QD=27.45;SOR=2.985	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr2	210894383	.	ATTG	A	136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=-0.524;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:40:165,0,40
chr2	210963031	.	CAT	C	151.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.096;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-0.246;SOR=0.892	GT:AD:DP:GQ:PL	0/1:10,5:15:99:180,0,459
chr2	211053947	.	T	TA	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.13;ReadPosRankSum=-0.189;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:58:65,0,58
chr2	211059792	.	A	AT	98.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.58;ReadPosRankSum=-1.197;SOR=1.609	GT:AD:DP:GQ:PL	0/1:8,7:15:99:127,0,149
chr2	211082924	.	CTTAAT	C	1423.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.05;ReadPosRankSum=0.449;SOR=0.779	GT:AD:DP:GQ:PL	0/1:34,37:71:99:1452,0,1294
chr2	211163063	.	TAC	T	310.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.042;QD=10.36;ReadPosRankSum=0.18;SOR=0.163	GT:AD:DP:GQ:PL	0/1:18,12:34:99:339,0,467
chr2	211320041	.	G	GAAA	341.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.927;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-1.663;SOR=0.631	GT:AD:DP:GQ:PL	0/1:16,12:31:99:370,0,570
chr2	211340937	.	A	AT	374.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.36;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=0.122;SOR=1.112	GT:AD:DP:GQ:PL	0/1:24,19:43:99:403,0,481
chr2	211341204	.	G	GC	928.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,26:26:78:957,78,0
chr2	211421452	.	A	ATCT	4434.77	PASS	AC=2;AF=1;AN=2;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=28.68;SOR=1.969	GT:AD:DP:GQ:PL	1/1:0,99:99:99:4463,306,0
chr2	211452598	.	TAC	T	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.29;ReadPosRankSum=0.431;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,171
chr2	211476695	.	C	CTTTT	68.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=-0.231;SOR=0.941	GT:AD:DP:GQ:PL	0/1:4,5:9:97:97,0,146
chr2	211521227	.	CTT	C,CT	1233.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=1.727;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=17.14;ReadPosRankSum=0.233;SOR=0.467	GT:AD:DP:GQ:PL	1/2:7,14,51:79:99:1262,853,1102,201,0,138
chr2	211521417	.	G	GT	51.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.847;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.72;ReadPosRankSum=0.044;SOR=2.012	GT:AD:DP:GQ:PL	0/1:13,6:19:80:80,0,219
chr2	211527827	.	GT	G	3884.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.54;ClippingRankSum=0;DP=277;ExcessHet=3.0103;FS=2.153;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.17;QD=15.99;ReadPosRankSum=-0.857;SOR=0.938	GT:AD:DP:GQ:PL	0/1:46,197:253:99:3913,0,433
chr2	211532800	.	A	ATG	284.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0.64;QD=21.92;ReadPosRankSum=0.494;SOR=2.833	GT:AD:DP:GQ:PL	0/1:2,11:13:14:313,0,14
chr2	212285339	.	AAAAG	A	6188.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0;DP=307;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.81;QD=21.49;ReadPosRankSum=-0.083;SOR=0.752	GT:AD:DP:GQ:PL	0/1:129,159:288:99:6217,0,6912
chr2	212295590	.	G	GT	1070.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.468;SOR=0.415	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1099,0,1168
chr2	212488828	.	GTC	G	77.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.316;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.05;ReadPosRankSum=-1.753;SOR=0.236	GT:AD:DP:GQ:PL	0/1:31,7:38:99:106,0,973
chr2	212488870	.	G	GC	877.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.68;SOR=3.352	GT:AD:DP:GQ:PL	1/1:0,23:23:69:906,69,0
chr2	213872853	.	TACA	T	655.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.23;ReadPosRankSum=1.19;SOR=0.288	GT:AD:DP:GQ:PGT:PID:PL	0/1:9,16:25:99:0|1:213872853_TACA_T:684,0,474
chr2	214012736	.	TA	T	34.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=0;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:16:63,0,16
chr2	214162317	.	CCTT	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	214175043	.	AACACACACACACACACACAC	A	64.41	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:7:91,7,0
chr2	214973202	.	CA	C	168.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=28.14;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:197,18,0
chr2	215013777	.	GTA	G	459.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=0;QD=17.03;ReadPosRankSum=-0.176;SOR=1.302	GT:AD:DP:GQ:PL	0/1:10,17:27:99:488,0,229
chr2	215593261	.	C	CT	48.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.88;ReadPosRankSum=1.78;SOR=0.16	GT:AD:DP:GQ:PL	0/1:5,5:10:67:77,0,67
chr2	215595861	.	G	GA	470.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=5.136	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,12:12:35:1|1:215595861_G_GA:499,35,0
chr2	215632035	.	A	AAGAG	85.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-1.006;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,181
chr2	215632124	.	ATT	A	698.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.64;ReadPosRankSum=-0.734;SOR=1.392	GT:AD:DP:GQ:PL	0/1:23,19:42:99:727,0,874
chr2	215657182	.	TA	T	433.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.733;QD=9.64;ReadPosRankSum=-1.838;SOR=0.665	GT:AD:DP:GQ:PL	0/1:20,25:61:99:462,0,371
chr2	215797527	.	AATTC	A	293.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=2;QD=15.46;ReadPosRankSum=0.205;SOR=1.179	GT:AD:DP:GQ:PL	0/1:10,9:19:99:322,0,497
chr2	215848674	.	G	GA	187.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.91;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=0.464;QD=13.41;ReadPosRankSum=-0.847;SOR=1.329	GT:AD:DP:GQ:PL	0/1:5,9:14:90:216,0,90
chr2	215876589	.	G	GT	255.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.75;ReadPosRankSum=0.692;SOR=1.164	GT:AD:DP:GQ:PL	0/1:19,14:40:99:284,0,330
chr2	215879998	.	GAGTT	G	176.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=31.79;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr2	215890324	.	G	GT	385.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.81;SOR=2.494	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,11:11:33:1|1:215890312_A_G:414,33,0
chr2	215890352	.	GTT	G	545.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=2.712	GT:AD:DP:GQ:PL	1/1:0,17:17:51:574,51,0
chr2	215929028	.	TA	T	1470.77	PASS	AC=2;AF=1;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.02;SOR=4.021	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1499,120,0
chr2	216235269	.	AC	A	160.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.8;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=0.547;SOR=1.371	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,5:12:99:0|1:216235269_AC_A:189,0,596
chr2	216235271	.	AAAAAAC	A	160.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.635;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=0.309;SOR=1.371	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,5:12:99:0|1:216235269_AC_A:189,0,596
chr2	216236395	.	ACTT	A	32.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:23:61,0,23
chr2	216238394	.	CTTTTTTTTTTTTTT	C	310.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=32.58;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:339,24,0
chr2	216244181	.	AGTAC	A	331.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr2	216251291	.	ATT	A	250.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.27;ReadPosRankSum=-0.671;SOR=3.767	GT:AD:DP:GQ:PL	1/1:1,5:13:8:231,8,0
chr2	216262124	.	TTC	T	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.35;ReadPosRankSum=1.28;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:5:31:150,0,31
chr2	216263938	.	C	CT	1863.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.79;ReadPosRankSum=-1.144;SOR=0.738	GT:AD:DP:GQ:PL	0/1:52,59:111:99:1892,0,1596
chr2	216269030	.	T	TTTTTTTG	221.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=0;SOR=0.136	GT:AD:DP:GQ:PL	0/1:20,4:27:99:250,0,855
chr2	216272669	.	CA	C	128.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.64;QD=25.78;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:157,15,0
chr2	216272677	.	CCACA	C	108.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.16;QD=33.27;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	216274853	.	AAC	A	841.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.46;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=3.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=-0.623;SOR=2.448	GT:AD:DP:GQ:PL	0/1:2,25:34:6:828,0,6
chr2	216296730	.	A	AT	640.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.076;ClippingRankSum=0;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.09;QD=6.89;ReadPosRankSum=-0.325;SOR=0.668	GT:AD:DP:GQ:PL	0/1:57,36:107:99:669,0,1094
chr2	216299571	.	T	TTAC	3955.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DP=224;ExcessHet=3.0103;FS=11.658;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.47;QD=18.66;ReadPosRankSum=-1.701;SOR=1.408	GT:AD:DP:GQ:PL	0/1:109,103:212:99:3984,0,4251
chr2	217024697	.	CT	C	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=-0.876;SOR=1.402	GT:AD:DP:GQ:PL	0/1:3,6:9:30:100,0,30
chr2	217280261	.	GT	G	696.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DP=134;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.829;QD=7.92;ReadPosRankSum=2.05;SOR=0.452	GT:AD:DP:GQ:PL	0/1:42,46:106:99:725,0,914
chr2	217281150	.	AC	A	266.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.39;SOR=1.739	GT:AD:DP:GQ:PL	0/1:12,12:24:99:295,0,293
chr2	217329432	.	C	CA	203.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0;QD=2.12;ReadPosRankSum=-0.278;SOR=0.557	GT:AD:DP:GQ:PL	0/1:76,20:120:99:232,0,1477
chr2	217498290	.	C	CGCCGCTGCT	265.8	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.74;QD=23.81;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr2	218577813	.	AC	A	784.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=11.257;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=1.72;QD=12.26;ReadPosRankSum=-2.279;SOR=0.146	GT:AD:DP:GQ:PL	0/1:31,33:64:99:813,0,771
chr2	218694510	.	CT	C	4818.77	PASS	AC=2;AF=1;AN=2;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=31.73;SOR=2.153	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,107:107:99:1|1:218694510_CT_C:4847,331,0
chr2	218758123	.	G	GCA	95.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=1.97;QD=5.63;ReadPosRankSum=-0.318;SOR=0.26	GT:AD:DP:GQ:PL	0/1:11,6:21:99:124,0,347
chr2	219081983	.	T	TTGGG	215.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr2	219103313	.	CTTTT	C,CT	2125.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.21;QD=25.19;SOR=5.074	GT:AD:DP:GQ:PL	1/2:0,22,27:66:99:2154,625,490,524,0,336
chr2	219104316	.	AT	A	349.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.57;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=7.132;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.059;QD=13.97;ReadPosRankSum=-1.302;SOR=4.332	GT:AD:DP:GQ:PL	0/1:6,19:31:52:377,0,52
chr2	219187771	.	C	CGG	102.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	219221982	.	G	GTC	192.8	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:221,21,0
chr2	219225552	.	GT	G	105.98	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.2;SOR=3.611	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,5:5:13:1|1:219225552_GT_G:134,13,0
chr2	219251176	.	GA	G	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=0.566;QD=3.8;ReadPosRankSum=-2.027;SOR=1.022	GT:AD:DP:GQ:PL	0/1:6,5:14:70:70,0,132
chr2	219265136	.	T	TC	2084.77	PASS	AC=2;AF=1;AN=2;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=25.16;SOR=1.302	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2113,171,0
chr2	219299817	.	ACT	A	104.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	219313728	.	GA	G	41.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:68,9,0
chr2	219320233	.	GA	G	395.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.606;QD=12.37;ReadPosRankSum=-0.216;SOR=1.179	GT:AD:DP:GQ:PL	0/1:10,22:43:89:424,0,89
chr2	219327898	.	AACACACACACACACACACACAC	A,AAC	683.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.63;QD=32.31;SOR=3.383	GT:AD:DP:GQ:PL	1/2:0,4,13:17:69:712,373,347,120,0,69
chr2	219350358	.	C	CA	45.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.52;ReadPosRankSum=-1.493;SOR=2.584	GT:AD:DP:GQ:PL	0/1:8,5:15:74:74,0,92
chr2	219352898	.	CA	C	22.21	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=7.4;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:49,9,0
chr2	219447612	.	CT	C	118.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.09;QD=2.9;ReadPosRankSum=1.66;SOR=0.593	GT:AD:DP:GQ:PL	0/1:29,12:55:99:147,0,702
chr2	219447916	.	TTGTG	T	822.77	PASS	AC=2;AF=1;AN=2;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=32.15;SOR=4.712	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,21:21:63:1|1:219447912_A_G:851,63,0
chr2	219451865	.	C	CT	13.95	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.49;ReadPosRankSum=0.674;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:36:42,0,36
chr2	219616610	.	C	CTTT	1390.77	PASS	AC=2;AF=1;AN=2;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.68;QD=27.88;SOR=5.943	GT:AD:DP:GQ:PL	1/1:0,29:39:98:1418,98,0
chr2	219616627	.	C	CTT	225.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.993;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.95;MQRankSum=-1.144;QD=15.06;ReadPosRankSum=-2.158;SOR=2.2	GT:AD:DP:GQ:PL	0/1:5,10:21:90:236,0,90
chr2	219674165	.	C	CTT	41.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.96;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.96;ReadPosRankSum=-1.036;SOR=0.991	GT:AD:DP:GQ:PL	0/1:3,3:6:60:70,0,60
chr2	219692527	.	G	GC	4454.77	PASS	AC=2;AF=1;AN=2;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=33.24;SOR=0.818	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4483,403,0
chr2	219692790	.	A	AG	1434.77	PASS	AC=2;AF=1;AN=2;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=32.61;SOR=1.23	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1463,132,0
chr2	220022713	.	TCACACACACA	T	197.9	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.99;QD=30.25;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:226,15,0
chr2	220034497	.	C	CCA	435.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=1.54;QD=15.03;ReadPosRankSum=-0.197;SOR=0.582	GT:AD:DP:GQ:PL	0/1:15,14:29:99:464,0,503
chr2	220040216	.	C	CA	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.848;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.99;ReadPosRankSum=-0.356;SOR=0.481	GT:AD:DP:GQ:PL	0/1:14,7:25:91:91,0,255
chr2	220071879	.	TG	T	138.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.37;ReadPosRankSum=-0.887;SOR=1.402	GT:AD:DP:GQ:PL	0/1:1,7:8:5:166,0,5
chr2	220082642	.	T	TA	80.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.08;ReadPosRankSum=2.19;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,6:10:46:109,0,46
chr2	220089590	.	T	TG	2014.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=32.5;SOR=3.187	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2043,189,0
chr2	220092237	.	CA	C	21.59	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=10.79;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
chr2	220107011	.	GTT	G	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.55;ReadPosRankSum=1.53;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,4:8:24:113,0,24
chr2	220194247	.	A	AATT	1866.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DP=106;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.03;QD=18.86;ReadPosRankSum=0.623;SOR=1.155	GT:AD:DP:GQ:PL	0/1:50,49:99:99:1895,0,2104
chr2	220195738	.	GTCT	G	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.405;SOR=0.412	GT:AD:DP:GQ:PL	0/1:6,4:10:99:150,0,276
chr2	220197821	.	CTA	C	157.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.24;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.693;SOR=2.303	GT:AD:DP:GQ:PL	0/1:8,6:14:99:186,0,239
chr2	220197929	.	CTTT	C	892.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.51;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=20.29;ReadPosRankSum=-1.013;SOR=0.976	GT:AD:DP:GQ:PL	0/1:21,23:77:99:921,0,905
chr2	220249299	.	C	CT	1445.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;MQRankSum=0.283;QD=24.93;ReadPosRankSum=1.35;SOR=6.736	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1474,146,0
chr2	220250897	.	AG	A	969.77	PASS	AC=2;AF=1;AN=2;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.63;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,28:28:84:998,84,0
chr2	220252287	.	CTCG	C	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.98;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	220264543	.	C	CAT	4809.77	PASS	AC=2;AF=1;AN=2;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=32.03;SOR=2.606	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4838,328,0
chr2	220286391	.	AT	A	65.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.06;ReadPosRankSum=-0.38;SOR=1.244	GT:AD:DP:GQ:PL	0/1:6,7:16:94:94,0,131
chr2	220330642	.	TGTGCGCGC	T	743.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=8.804;MLEAC=1;MLEAF=0.5;MQ=63.69;MQRankSum=3.15;QD=21.88;ReadPosRankSum=1.57;SOR=0.04	GT:AD:DP:GQ:PGT:PID:PL	0/1:13,21:34:99:0|1:220330642_TGTGCGCGC_T:772,0,482
chr2	220330657	.	GTGCA	G	738.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.5;MQ=62.87;MQRankSum=3.34;QD=20.52;SOR=0.133	GT:AD:DP:GQ:PGT:PID:PL	0/1:15,21:36:99:0|1:220330642_TGTGCGCGC_T:767,0,532
chr2	220341935	.	A	AG	214.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.669;SOR=0.175	GT:AD:DP:GQ:PGT:PID:PL	0/1:16,7:23:99:0|1:220341935_A_AG:243,0,2989
chr2	220341938	.	C	CGGGGCCTGGTACAGCGGCT	255.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.445;SOR=0.157	GT:AD:DP:GQ:PGT:PID:PL	0/1:17,7:24:99:0|1:220341935_A_AG:284,0,2987
chr2	220413658	.	CA	C	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.65;MQRankSum=1.24;QD=11.72;ReadPosRankSum=-1.415;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,4:8:99:0|1:220413658_CA_C:122,0,126
chr2	220426366	.	G	GC	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:220426366_G_GC:135,9,0
chr2	220466344	.	G	GT,GTT	2979.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0;DP=187;ExcessHet=3.0103;FS=1.107;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.4;MQRankSum=0.341;QD=20.55;ReadPosRankSum=1.53;SOR=0.495	GT:AD:DP:GQ:PL	1/2:15,89,41:162:99:3008,699,599,1359,0,1590
chr2	220467758	.	G	GT	23.55	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.57;MQRankSum=-0.319;QD=5.89;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,3:4:2:49,2,0
chr2	220474466	.	GT	G	43.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.25;ReadPosRankSum=-0.366;SOR=3.611	GT:AD:DP:GQ:PL	0/1:2,5:7:27:72,0,27
chr2	220480246	.	C	CAGAG	570.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.82;QD=26.04;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,14:14:42:599,42,0
chr2	220494604	.	AG	A	81.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.26;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:109,12,0
chr2	220521299	.	GACAGAGAAACATGAAAA	G	444.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=0.873;QD=23.41;ReadPosRankSum=0.281;SOR=0.883	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,12:19:99:0|1:220521277_G_C:473,0,1326
chr2	222307971	.	CAG	C	81.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.13;MQRankSum=0.524;QD=16.35;ReadPosRankSum=-0.524;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:76:110,0,76
chr2	222437136	.	A	AG	229.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,7:7:21:258,21,0
chr2	223158652	.	GT	G	1320.77	PASS	AC=2;AF=1;AN=2;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=2.712	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1349,108,0
chr2	223339533	.	CT	C	371.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-2.393;SOR=1.556	GT:AD:DP:GQ:PL	0/1:10,20:40:99:400,0,104
chr2	223574618	.	T	TA	599.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.44;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=0.037;SOR=0.465	GT:AD:DP:GQ:PL	0/1:16,28:44:99:628,0,256
chr2	223781017	.	AT	A	608.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=1.32;QD=12.42;ReadPosRankSum=-1.114;SOR=0.382	GT:AD:DP:GQ:PL	0/1:17,32:49:99:637,0,313
chr2	223787272	.	G	GTCTC	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=-0.936;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,260
chr2	223806189	.	C	CT	96.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.61;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.76;ReadPosRankSum=1.76;SOR=0.573	GT:AD:DP:GQ:PL	0/1:25,10:35:99:125,0,1156
chr2	224629851	.	C	CT	1010.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=5.293;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=-1.449;QD=15.79;ReadPosRankSum=-0.02;SOR=1.678	GT:AD:DP:GQ:PL	0/1:31,33:64:99:1039,0,938
chr2	224629876	.	C	CCAT,CCATCAT	3796.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.22;MQRankSum=0;QD=31.1;ReadPosRankSum=-1.149;SOR=1.244	GT:AD:DP:GQ:PL	1/2:1,49,36:86:99:3825,1557,1420,2026,0,1931
chr2	224749578	.	T	TC,TCTTC	1625.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=61.56;QD=24.2;SOR=4.615	GT:AD:DP:GQ:PL	1/2:0,11,20:31:99:1654,508,388,309,0,192
chr2	224765755	.	TA	T	220.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=20.07;SOR=4.977	GT:AD:DP:GQ:PL	1/1:0,11:11:33:249,33,0
chr2	224777105	.	G	GTGAT	3252.77	PASS	AC=2;AF=1;AN=2;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=29.53;SOR=2.802	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,72:72:99:1|1:224777094_T_C:3281,229,0
chr2	225365344	.	CT	C	51.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-0.674;SOR=2.303	GT:AD:DP:GQ:PL	0/1:1,5:6:5:79,0,5
chr2	225422239	.	AT	A	1049.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=29.91;SOR=5.353	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1078,87,0
chr2	225422600	.	C	CAAAAA	605.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=29.12;ReadPosRankSum=-1.32;SOR=3.611	GT:AD:DP:GQ:PL	0/1:1,7:25:68:450,0,68
chr2	225661982	.	AT	A	157.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.781;QD=9.28;ReadPosRankSum=-0.071;SOR=0.631	GT:AD:DP:GQ:PL	0/1:7,10:22:99:186,0,141
chr2	225668717	.	A	ATG	102.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.55;ReadPosRankSum=-0.366;SOR=2.584	GT:AD:DP:GQ:PL	0/1:1,4:7:30:102,0,30
chr2	225719571	.	GCCAACCAA	G	118.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.03;SOR=0.283	GT:AD:DP:GQ:PL	0/1:7,4:11:99:147,0,574
chr2	225751256	.	TA	T	1150.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0;DP=160;ExcessHet=3.0103;FS=5.242;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.866;QD=9.28;ReadPosRankSum=-1.854;SOR=0.385	GT:AD:DP:GQ:PL	0/1:58,66:138:99:1179,0,1144
chr2	225796458	.	ATC	A	625.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.4;ReadPosRankSum=-0.535;SOR=0.332	GT:AD:DP:GQ:PL	0/1:17,17:34:99:654,0,651
chr2	225848225	.	G	GA	110.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.47;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:139,18,0
chr2	227773298	.	T	TACAC	108.18	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	227773354	.	G	GAC	207.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.98;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.89;ReadPosRankSum=0.261;SOR=2.833	GT:AD:DP:GQ:PL	0/1:4,7:11:99:236,0,103
chr2	227886541	.	A	AAAAAT	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.01;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	227892728	.	T	TA	54.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.11;ReadPosRankSum=-1.253;SOR=0.202	GT:AD:DP:GQ:PGT:PID:PL	0/1:20,6:26:83:0|1:227892720_C_T:83,0,402
chr2	227912447	.	C	CCACA	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	227921065	.	TA	T	18.87	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.29;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:21:47,0,21
chr2	227924817	.	G	GA	679.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.94;ReadPosRankSum=-1.245;SOR=0.627	GT:AD:DP:GQ:PL	0/1:2,9:38:24:187,0,24
chr2	227927189	.	GT	G	284.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.3;ReadPosRankSum=0.96;SOR=1.292	GT:AD:DP:GQ:PL	0/1:22,17:54:99:313,0,477
chr2	227966298	.	T	TA	1367.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.352;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=0.344;QD=24.42;ReadPosRankSum=-0.061;SOR=0.395	GT:AD:DP:GQ:PL	1/1:5,51:66:91:1339,91,0
chr2	227967601	.	ACAATATTTCAGCAATAGGGAAAG	A	1380.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.01;ReadPosRankSum=0.049;SOR=0.61	GT:AD:DP:GQ:PL	0/1:33,36:69:99:1409,0,5974
chr2	227967830	.	GA	G	271.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.11;QD=7.15;ReadPosRankSum=-0.762;SOR=0.732	GT:AD:DP:GQ:PL	0/1:20,18:38:99:300,0,406
chr2	228102892	.	T	TA	146.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.023;SOR=2.494	GT:AD:DP:GQ:PL	0/1:2,9:11:14:175,0,14
chr2	228109626	.	T	TG	6314.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DP=370;ExcessHet=3.0103;FS=4.522;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=18.96;ReadPosRankSum=0.93;SOR=0.392	GT:AD:DP:GQ:PL	1/1:32,301:333:99:6343,218,0
chr2	228142038	.	GAA	G	504.77	PASS	AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=27.08;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:20:51:434,51,0
chr2	228146991	.	AATAT	A,AAT	578.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=34.05;ReadPosRankSum=0.165;SOR=3.258	GT:AD:DP:GQ:PL	1/2:1,6,10:21:99:607,302,313,242,0,199
chr2	228159660	.	GT	G	1369.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.05;QD=12.34;ReadPosRankSum=-0.098;SOR=0.724	GT:AD:DP:GQ:PL	0/1:35,76:134:99:1398,0,509
chr2	228174175	.	TACAA	T	556.77	PASS	AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=2.147	GT:AD:DP:GQ:PL	1/1:0,13:13:39:585,39,0
chr2	228194639	.	T	TAA	416.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;QD=33.47;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,6:12:36:393,36,0
chr2	228356364	.	GT	G	554.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.057;SOR=0.527	GT:AD:DP:GQ:PL	0/1:14,28:54:99:583,0,163
chr2	228373404	.	A	AT	372.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.514;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=3.694;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0;QD=11.3;ReadPosRankSum=-1.096;SOR=1.675	GT:AD:DP:GQ:PL	0/1:15,18:49:99:401,0,269
chr2	228560800	.	GA	G	1540.77	PASS	AC=2;AF=1;AN=2;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=25.26;SOR=1.107	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1569,183,0
chr2	228567111	.	AT	A	354.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.61;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=0.521;QD=14.79;ReadPosRankSum=0.546;SOR=1.839	GT:AD:DP:GQ:PL	0/1:4,20:27:14:383,0,14
chr2	228786021	.	CTTTT	C	1782.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=34.5;ReadPosRankSum=-0.383;SOR=2.252	GT:AD:DP:GQ:PL	0/1:3,23:77:60:1456,0,60
chr2	228860446	.	GCA	G	77.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.204;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=8.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.29;ReadPosRankSum=0.272;SOR=0.034	GT:AD:DP:GQ:PL	0/1:28,6:34:99:106,0,904
chr2	228886413	.	TG	T	1788.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.45;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.927;QD=17.2;ReadPosRankSum=-0.261;SOR=0.744	GT:AD:DP:GQ:PL	0/1:47,57:104:99:1817,0,1415
chr2	228973723	.	C	CT	351.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.951;QD=7.65;ReadPosRankSum=0.289;SOR=0.892	GT:AD:DP:GQ:PL	0/1:26,20:57:99:380,0,483
chr2	230020406	.	TTTA	T	454.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.8;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.94;ReadPosRankSum=-0.793;SOR=2.694	GT:AD:DP:GQ:PL	0/1:7,12:19:99:483,0,245
chr2	230135711	.	G	GC	2137.77	PASS	AC=2;AF=1;AN=2;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=29.96;SOR=0.914	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2166,174,0
chr2	230341979	.	AC	A	865.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.13;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=2.05;QD=7.66;ReadPosRankSum=-0.56;SOR=0.5	GT:AD:DP:GQ:PL	0/1:76,37:113:99:894,0,2595
chr2	230411518	.	TAGAC	T	218.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=63.93;MQRankSum=2.6;QD=15.63;ReadPosRankSum=-0.817;SOR=2.303	GT:AD:DP:GQ:PL	0/1:6,8:14:99:247,0,195
chr2	230453214	.	G	GA	904.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=0.39;QD=23.2;ReadPosRankSum=-0.818;SOR=0.722	GT:AD:DP:GQ:PL	1/1:4,35:45:42:910,42,0
chr2	230633572	.	T	TAAATC	259.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.812;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.86;ReadPosRankSum=-0.549;SOR=2.584	GT:AD:DP:GQ:PL	0/1:2,7:9:99:288,0,116
chr2	230652544	.	TC	T	85.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	230655613	.	GT	G	157.8	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.19;QD=22.54;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:186,21,0
chr2	230656987	.	TA	T	241.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=4.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.18;ReadPosRankSum=0.201;SOR=0.136	GT:AD:DP:GQ:PL	0/1:54,22:83:99:270,0,1185
chr2	230661661	.	AAC	A	48.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	230705516	.	TA	T	160.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.36;ReadPosRankSum=-0.324;SOR=0.892	GT:AD:DP:GQ:PL	0/1:18,12:39:99:189,0,420
chr2	230797393	.	C	CA	26.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr2	231033633	.	A	ATTAAT	162.84	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.06;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:18:191,18,0
chr2	231043177	.	C	CA	70.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-0.21;SOR=2.303	GT:AD:DP:GQ:PL	0/1:1,5:6:5:98,0,5
chr2	231120255	.	CG	C	3323.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.274;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.64;MQRankSum=-0.12;QD=34.62;ReadPosRankSum=0.975;SOR=0.709	GT:AD:DP:GQ:PL	1/1:1,95:96:99:3352,262,0
chr2	231226218	.	G	GTCATGTGTAACCC	368.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.76;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=0.362;SOR=0.693	GT:AD:DP:GQ:PL	0/1:18,8:26:99:397,0,2349
chr2	231282534	.	C	CT	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.524;QD=10.08;ReadPosRankSum=-1.133;SOR=1.085	GT:AD:DP:GQ:PL	0/1:4,6:10:72:129,0,72
chr2	231325732	.	A	AT	38.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:65,9,0
chr2	231330899	.	C	CAAAA	1425.77	PASS	AC=2;AF=1;AN=2;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=26.63;SOR=3.365	GT:AD:DP:GQ:PL	1/1:0,18:42:99:1327,124,0
chr2	231331701	.	A	AG	826.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=4.514	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,19:19:57:1|1:231331694_A_G:855,57,0
chr2	231334504	.	AAAAG	A	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.5;MQ=61.29;MQRankSum=0;QD=14.37;ReadPosRankSum=-0.628;SOR=0.111	GT:AD:DP:GQ:PL	0/1:4,17:21:33:330,0,33
chr2	231363252	.	TA	T	284.84	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.8;ReadPosRankSum=-0.997;SOR=0.42	GT:AD:DP:GQ:PL	1/1:2,14:19:6:301,6,0
chr2	231407863	.	G	GA	121.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr2	231678693	.	CTTTT	C	352.41	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.84;ReadPosRankSum=1.28;SOR=2.179	GT:AD:DP:GQ:PL	0/1:4,6:32:99:380,0,353
chr2	231861032	.	TCAGCAGCCTAGCCCTGAATCCACACCA	T	6428.77	PASS	AC=2;AF=1;AN=2;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.38;QD=37.34;SOR=1.459	GT:AD:DP:GQ:PL	1/1:0,167:167:99:6457,507,0
chr2	231943505	.	CT	C,CTT	225.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=0.684;SOR=0.665	GT:AD:DP:GQ:PL	1/2:8,10,10:45:91:254,131,349,91,0,270
chr2	232025952	.	T	TA	124.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=0.853;QD=6.57;ReadPosRankSum=-0.675;SOR=1.255	GT:AD:DP:GQ:PL	0/1:11,8:29:99:153,0,238
chr2	232029738	.	TTATATATATTTATATATATATATATATATATATATATATATATATATATATATA	T	799.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.43;SOR=4.712	GT:AD:DP:GQ:PL	0/1:1,20:21:54:828,0,54
chr2	232072796	.	ATTTG	A	104.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=0.967;QD=8.73;ReadPosRankSum=0.738;SOR=2.494	GT:AD:DP:GQ:PL	0/1:8,4:12:99:133,0,441
chr2	232225535	.	C	CG	1112.77	PASS	AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.73;SOR=1.244	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1141,102,0
chr2	232324644	.	T	TA	85.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	232389587	.	CCCT	C	166.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.68;ReadPosRankSum=0.345;SOR=0.693	GT:AD:DP:GQ:PL	0/1:5,5:10:99:195,0,196
chr2	232392684	.	G	GACACACAC	230.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.98;ReadPosRankSum=-0.452;SOR=0.446	GT:AD:DP:GQ:PL	0/1:5,6:14:99:259,0,323
chr2	232995569	.	T	TA	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.05;ReadPosRankSum=0.378;SOR=0.693	GT:AD:DP:GQ:PL	0/1:26,9:38:99:100,0,510
chr2	233243619	.	A	AAC	524.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=29.649;MLEAC=1;MLEAF=0.5;MQ=50.94;MQRankSum=-4.165;QD=7.09;ReadPosRankSum=0.481;SOR=1.988	GT:AD:DP:GQ:PL	0/1:54,20:74:99:553,0,1846
chr2	233271697	.	TAC	T,TACACAC	1579.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.592;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=56.83;MQRankSum=4.09;QD=26.78;ReadPosRankSum=0.032;SOR=0.602	GT:AD:DP:GQ:PL	1/2:7,31,21:67:99:1608,584,835,813,0,1220
chr2	233392020	.	A	AAAAGAG	339.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=6.317;MLEAC=1;MLEAF=0.5;MQ=61.69;MQRankSum=0;QD=33.98;ReadPosRankSum=1.03;SOR=0.039	GT:AD:DP:GQ:PL	0/1:4,6:16:99:368,0,152
chr2	233398497	.	A	AG	173.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.52;QD=34.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr2	233404334	.	C	CGGGCTGGCT	409.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.898;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.93;MQRankSum=1.53;QD=20.49;ReadPosRankSum=0.076;SOR=0.693	GT:AD:DP:GQ:PL	0/1:10,10:20:99:438,0,365
chr2	233408190	.	A	AC,ACCC	1740.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=30.54;ReadPosRankSum=-1.457;SOR=0.854	GT:AD:DP:GQ:PL	1/2:2,38,17:67:99:1769,650,533,1042,0,1301
chr2	233408220	.	AG	A	2602.77	PASS	AC=2;AF=1;AN=2;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=30.62;SOR=1.872	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2631,256,0
chr2	233421284	.	CT	C	1200.77	PASS	AC=2;AF=1;AN=2;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=3.202	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1229,117,0
chr2	233429144	.	GTATTT	G	347.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.46;QD=31.96;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:28:376,28,0
chr2	233470900	.	TC	T	7415.77	PASS	AC=2;AF=1;AN=2;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=34.17;SOR=1.643	GT:AD:DP:GQ:PL	1/1:0,217:217:99:7444,653,0
chr2	233620907	.	CT	C	84.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.39;ReadPosRankSum=-0.129;SOR=1.214	GT:AD:DP:GQ:PL	0/1:16,9:39:99:113,0,338
chr2	233651737	.	AT	A	236.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.68;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,10:10:30:265,30,0
chr2	233652137	.	T	TG	279.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=1.1;QD=13.99;ReadPosRankSum=-0.833;SOR=1.329	GT:AD:DP:GQ:PL	0/1:10,10:20:99:308,0,315
chr2	233677041	.	CT	C	178.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.48;ReadPosRankSum=0;SOR=0.354	GT:AD:DP:GQ:PL	0/1:54,18:92:99:207,0,1235
chr2	233712226	.	CACA	C	3259.77	PASS	AC=2;AF=1;AN=2;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.42;QD=31.99;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3288,235,0
chr2	233740055	.	AAGAG	A	515.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=2.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=0.334;SOR=1.508	GT:AD:DP:GQ:PL	0/1:23,15:38:99:544,0,1139
chr2	233744130	.	GCCC	G,GC	951.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=26.88;SOR=5.136	GT:AD:DP:GQ:PL	1/2:0,11,15:26:99:980,467,431,365,0,334
chr2	233752944	.	ACACG	A	1462.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=60.56;MQRankSum=1.89;QD=16.44;ReadPosRankSum=1.03;SOR=1.445	GT:AD:DP:GQ:PL	0/1:41,48:89:99:1491,0,1928
chr2	233753082	.	C	CA	358.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=2.093	GT:AD:DP:GQ:PL	1/1:0,9:9:27:387,27,0
chr2	233880621	.	GGTGT	G	110.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.431;QD=15.82;ReadPosRankSum=0.732;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,4:9:99:139,0,118
chr2	234079551	.	CAA	C,CA	231.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=19.31;SOR=2.67	GT:AD:DP:GQ:PL	1/2:0,7,5:12:75:260,92,75,122,0,89
chr2	234094360	.	TA	T	102.77	PASS	AC=1;AF=0.5;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=17.13;SOR=3.258	GT:AD:DP:GQ:PL	0/1:0,6:10:13:58,0,13
chr2	234103862	.	G	GA	323.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.126;QD=32.32;ReadPosRankSum=1.04;SOR=1.996	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,9:10:4:0|1:234103862_G_GA:350,0,4
chr2	234178624	.	CT	C	155.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=4.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.89;ReadPosRankSum=1.35;SOR=0.245	GT:AD:DP:GQ:PL	0/1:27,13:45:99:184,0,560
chr2	234249397	.	TTG	T,TTGTG	214.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=61.07;QD=26.85;SOR=1.863	GT:AD:DP:GQ:PL	1/2:0,5,3:8:99:243,105,111,153,0,173
chr2	234250769	.	C	CA	359.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.75;MQRankSum=1.87;QD=18.94;ReadPosRankSum=-0.932;SOR=2.448	GT:AD:DP:GQ:PL	0/1:3,16:29:4:339,0,4
chr2	234254810	.	T	TAATAAAATAA	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.15;MQRankSum=0;QD=18.35;ReadPosRankSum=1.04;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:74:120,0,74
chr2	234294561	.	T	TTC	5438.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.898;QD=21.84;ReadPosRankSum=-0.52;SOR=0.675	GT:AD:DP:GQ:PL	0/1:110,139:249:99:5467,0,4185
chr2	234294634	.	CGTGTGCGTGT	C	5331.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.91;ClippingRankSum=0;DP=292;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.5;ReadPosRankSum=-1.205;SOR=0.506	GT:AD:DP:GQ:PL	0/1:108,140:248:99:5360,0,4023
chr2	234347091	.	TA	T	107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.67;ReadPosRankSum=0.29;SOR=1.426	GT:AD:DP:GQ:PL	0/1:11,8:19:99:136,0,220
chr2	234368639	.	AT	A	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.91;ReadPosRankSum=0.572;SOR=0.527	GT:AD:DP:GQ:PL	0/1:9,4:15:66:66,0,179
chr2	234397006	.	AT	A	991.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=4.204;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=2.47;QD=11.95;ReadPosRankSum=-1.024;SOR=0.296	GT:AD:DP:GQ:PL	0/1:34,49:83:99:1020,0,676
chr2	234398195	.	G	GA	60.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.05;ReadPosRankSum=0.308;SOR=0.26	GT:AD:DP:GQ:PL	0/1:10,5:15:89:89,0,188
chr2	234421283	.	A	AATATTATTTTTCTTAGT	1233.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.63;ReadPosRankSum=-4.709;SOR=1.314	GT:AD:DP:GQ:PL	0/1:39,31:70:99:1262,0,6237
chr2	234429739	.	T	TTTC	2036.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.105;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=11.165;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.44;ReadPosRankSum=-0.288;SOR=0.184	GT:AD:DP:GQ:PL	0/1:43,52:95:99:2065,0,1839
chr2	234438246	.	C	CT	1455.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16;ReadPosRankSum=-0.485;SOR=1.305	GT:AD:DP:GQ:PL	0/1:44,47:91:99:1484,0,1357
chr2	234442437	.	CA	C	271.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=1.29;QD=8.49;ReadPosRankSum=-0.267;SOR=0.307	GT:AD:DP:GQ:PL	0/1:15,17:35:99:300,0,321
chr2	234458047	.	TG	T	70.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-1.718;SOR=0.086	GT:AD:DP:GQ:PL	0/1:4,3:7:99:99,0,138
chr2	234545039	.	A	AT,ATT	310.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=52.1;MQRankSum=-1.891;QD=20.72;ReadPosRankSum=-1.567;SOR=1.981	GT:AD:DP:GQ:PL	1/2:2,6,7:17:78:339,145,141,78,0,100
chr2	234580453	.	AT	A	659.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=22.75;SOR=5.353	GT:AD:DP:GQ:PL	1/1:0,29:29:86:688,86,0
chr2	234599234	.	GA	G	1183.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.874;ClippingRankSum=0;DP=163;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.976;QD=11.27;ReadPosRankSum=0.027;SOR=0.893	GT:AD:DP:GQ:PL	0/1:42,63:133:99:1212,0,871
chr2	234599422	.	TAC	T	74.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=24.73;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
chr2	234668879	.	C	CAT	589.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.02;ReadPosRankSum=-0.508;SOR=0.97	GT:AD:DP:GQ:PL	0/1:12,19:31:99:618,0,356
chr2	234698911	.	ATC	A	122.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.55;ReadPosRankSum=-0.842;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:28:151,0,28
chr2	234740797	.	C	CAAAA	3130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.57;ClippingRankSum=0;DP=197;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.06;ReadPosRankSum=-1.219;SOR=1.235	GT:AD:DP:GQ:PGT:PID:PL	0/1:117,78:195:99:0|1:234740797_C_CAAAA:3159,0,6180
chr2	234741028	.	A	AG	1444.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=4.59;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.52;ReadPosRankSum=0.584;SOR=1.058	GT:AD:DP:GQ:PGT:PID:PL	0/1:37,37:74:99:0|1:234741022_T_C:1473,0,1647
chr2	234871842	.	CA	C	1466.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.3;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.49;QD=13.84;ReadPosRankSum=1.53;SOR=1.032	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1495,0,1527
chr2	234916771	.	AT	A	162.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.35;QD=2.11;ReadPosRankSum=1.01;SOR=0.693	GT:AD:DP:GQ:PL	0/1:58,19:91:99:191,0,1267
chr2	234923428	.	C	CAAAA	159.77	PASS	AC=1;AF=0.5;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=26.6;SOR=4.174	GT:AD:DP:GQ:PL	0/1:0,3:7:16:120,0,16
chr2	236706612	.	A	AT	454.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=1.22;QD=11.37;ReadPosRankSum=-0.932;SOR=0.384	GT:AD:DP:GQ:PL	0/1:18,22:44:99:483,0,292
chr2	236877066	.	AT	A	373.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0;DP=95;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.8;ReadPosRankSum=-1.658;SOR=0.906	GT:AD:DP:GQ:PL	0/1:32,23:76:99:402,0,580
chr2	236923361	.	C	CT	197.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.04;QD=8.99;ReadPosRankSum=0.79;SOR=1.863	GT:AD:DP:GQ:PL	0/1:12,10:25:99:226,0,222
chr2	237032936	.	TC	T	63.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=1.04;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,3:5:56:92,0,56
chr2	237247036	.	G	GA	668.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.59;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.922;QD=11.34;ReadPosRankSum=0.948;SOR=1.055	GT:AD:DP:GQ:PL	0/1:26,33:59:99:697,0,454
chr2	237272860	.	C	CCTT	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.11;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	237402655	.	G	GA	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.98;ReadPosRankSum=-0.075;SOR=0.223	GT:AD:DP:GQ:PL	0/1:9,4:13:67:67,0,176
chr2	238005370	.	GT	G	1393.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=4.776;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.955;QD=16.59;ReadPosRankSum=-0.004;SOR=1.934	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1422,0,1205
chr2	238305660	.	T	TGATA	152.03	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.31;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	238419910	.	CT	C	17.95	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.99;ReadPosRankSum=1.28;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,4:6:16:46,0,16
chr2	238499863	.	A	AAATTCTTCAGGAGACTCT	669.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.22;ReadPosRankSum=-3.69;SOR=1.061	GT:AD:DP:GQ:PGT:PID:PL	0/1:33,11:44:99:0|1:238499863_A_AAATTCTTCAGGAGACTCT:698,0,7662
chr2	238661870	.	GT	G	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.489;QD=8.97;ReadPosRankSum=-0.366;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:56:100,0,56
chr2	238667501	.	G	GA	283.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=13.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=1.29;SOR=0.019	GT:AD:DP:GQ:PL	0/1:11,14:25:99:312,0,207
chr2	238894784	.	CT	C	365.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=7.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.48;ReadPosRankSum=0.239;SOR=1.061	GT:AD:DP:GQ:PL	1/1:2,10:16:20:363,20,0
chr2	238896494	.	C	CA	433.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.02;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=2.232;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0.653;QD=12.76;ReadPosRankSum=0.925;SOR=1.699	GT:AD:DP:GQ:PL	0/1:12,22:45:99:462,0,189
chr2	238925155	.	CT	C	55.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60.93;MQRankSum=2.19;QD=2.53;ReadPosRankSum=-0.035;SOR=1.371	GT:AD:DP:GQ:PL	0/1:15,7:22:84:84,0,338
chr2	238925461	.	TC	T	196.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr2	238941092	.	C	CA	26.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=2.73;MLEAC=1;MLEAF=0.5;MQ=59.52;MQRankSum=0.385;QD=2.68;ReadPosRankSum=0.105;SOR=1.609	GT:AD:DP:GQ:PL	0/1:7,3:10:55:55,0,155
chr2	238944441	.	ACT	A	337.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.758;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.696;SOR=0.117	GT:AD:DP:GQ:PL	0/1:18,10:28:99:366,0,705
chr2	238950014	.	TAC	T	1669.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.538;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.13;QD=16.7;ReadPosRankSum=0.641;SOR=0.662	GT:AD:DP:GQ:PL	0/1:55,45:100:99:1698,0,2303
chr2	238969572	.	T	TG	134.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.98;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr2	239002480	.	CTTG	C	2281.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DP=166;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.23;QD=14.63;ReadPosRankSum=0.987;SOR=0.666	GT:AD:DP:GQ:PL	0/1:93,63:156:99:2310,0,4378
chr2	239007755	.	CATT	C	1077.77	PASS	AC=2;AF=1;AN=2;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.8;QD=28.04;SOR=5.058	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1106,75,0
chr2	239010455	.	GGAA	G	249.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.323;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.6;MQRankSum=2.13;QD=13.88;ReadPosRankSum=-1.48;SOR=1.445	GT:AD:DP:GQ:PL	0/1:10,8:18:99:278,0,400
chr2	239081996	.	TC	T	220.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:249,24,0
chr2	239082166	.	G	GC	3824.77	PASS	AC=2;AF=1;AN=2;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.65;QD=34.46;SOR=1.786	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3853,333,0
chr2	239092618	.	C	CCACA	7801.77	PASS	AC=2;AF=1;AN=2;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=27.05;SOR=2.01	GT:AD:DP:GQ:PL	1/1:0,168:168:99:7830,540,0
chr2	239242719	.	G	GT	263.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.47;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.176;SOR=0.551	GT:AD:DP:GQ:PL	0/1:10,14:27:99:292,0,116
chr2	240009570	.	G	GC	44.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.28;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr2	240078587	.	GAC	G	289.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.98;ReadPosRankSum=0.842;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,8:10:57:318,0,57
chr2	240097969	.	TCCCTCCCTCTGCCCGGCCTCCCTCCCTCTGCCCGGCCTTCTGCGCCCGCACTCCCTCCCTCTGCCCAGCCTTCCGTGCCCGCAC	T	3276.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.48;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=11.819;MLEAC=1;MLEAF=0.5;MQ=55.69;MQRankSum=3.67;QD=33.44;ReadPosRankSum=1.16;SOR=0.046	GT:AD:DP:GQ:PL	0/1:15,83:98:99:3305,0,2752
chr2	240158529	.	A	AAGAAAATCAAAGATCCTT	135.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.15;ReadPosRankSum=0.842;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:49:164,0,49
chr2	240323905	.	T	TG	3099.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.782;ClippingRankSum=0;DP=245;ExcessHet=3.0103;FS=8.328;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.96;QD=13.42;ReadPosRankSum=0.321;SOR=1	GT:AD:DP:GQ:PL	0/1:129,102:231:99:3128,0,4101
chr2	240900607	.	TG	T	2309.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DP=211;ExcessHet=3.0103;FS=6.298;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.52;QD=11.97;ReadPosRankSum=1.53;SOR=1.117	GT:AD:DP:GQ:PL	0/1:103,90:193:99:2338,0,2675
chr2	240908852	.	C	CCTGACCCTGCATCTG	98.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:9:125,9,0
chr2	240909304	.	CAG	C	199.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.773;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=-0.376;SOR=0.473	GT:AD:DP:GQ:PL	0/1:8,6:14:99:228,0,322
chr2	240964393	.	CCT	C	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	240964590	.	CGCCACCCCGCCACCCT	C	82.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=-0.319;SOR=2.093	GT:AD:DP:GQ:PL	0/1:3,3:6:99:111,0,191
chr2	240982059	.	CCGTGGGTG	C	3753.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1;MQ=54.02;MQRankSum=1.77;QD=34.76;ReadPosRankSum=-0.995;SOR=0.434	GT:AD:DP:GQ:PGT:PID:PL	1/1:1,107:108:99:1|1:240982059_CCGTGGGTG_C:3782,234,0
chr2	240982068	.	AAGAGGCATGGACGAAGGGCCGTGGGTGAAGAGGCATGGACGAAGGGCC	A	3751.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1;MQ=54.13;MQRankSum=1.77;QD=34.74;ReadPosRankSum=-1.702;SOR=0.434	GT:AD:DP:GQ:PGT:PID:PL	1/1:1,107:108:99:1|1:240982059_CCGTGGGTG_C:3780,234,0
chr2	241448660	.	G	GGATA	246.78	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.9;QD=32.6;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:24:275,24,0
chr2	241496445	.	TA	T	173.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr2	241534241	.	A	AGATGATTCTGTCCCAGGAGCCGGGAGGAGGGT	86.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.07;MQRankSum=-1.15;QD=21.69;ReadPosRankSum=-1.15;SOR=1.492	GT:AD:DP:GQ:PL	0/1:3,1:4:99:115,0,120
chr2	241859168	.	C	CCAGGTGCTCA	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.89;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:12:180,12,0
chr2	241976615	.	CG	C	868.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.56;MQRankSum=2.35;QD=11.74;ReadPosRankSum=-2.277;SOR=0.776	GT:AD:DP:GQ:PL	0/1:42,32:74:99:897,0,1259
chr2	242004219	.	T	TG	1114.77	PASS	AC=2;AF=1;AN=2;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=33.62;SOR=2.093	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1143,93,0
chr2	242007465	.	AC	A	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.589;QD=13.53;ReadPosRankSum=0.231;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,5:9:99:150,0,117
chr2	242075147	.	A	AC	26.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:23:55,0,23
chr2	242157353	.	CG	C	134.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.98;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr2	242203776	.	C	CA	173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.563;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.81;MQRankSum=-0.993;QD=7.9;ReadPosRankSum=-0.537;SOR=0.569	GT:AD:DP:GQ:PL	0/1:11,11:32:99:202,0,214
chr2	242259450	.	C	CT	269.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.87;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.75;ReadPosRankSum=0.665;SOR=1.609	GT:AD:DP:GQ:PL	0/1:4,9:13:99:298,0,111
chr2	242263803	.	CTT	C	406.77	PASS	AC=2;AF=1;AN=2;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.39;QD=27.75;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,11:19:34:373,34,0
chr2	242289663	.	C	CATT	2266.77	PASS	AC=2;AF=1;AN=2;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.55;QD=32.98;SOR=5.058	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2295,156,0
chr2	242312477	.	G	GT	610.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0;DP=74;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.856;QD=10.72;ReadPosRankSum=-0.349;SOR=1.287	GT:AD:DP:GQ:PL	0/1:28,29:69:99:639,0,455
chr2	242370844	.	TG	T	190.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;QD=31.81;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:219,18,0
chr2	242433012	.	GT	G	49.94	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=1.47;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:14:78,0,14
chr2	242435658	.	CAAGG	C	130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.68;ReadPosRankSum=1.01;SOR=2.494	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,171
chr2	242608183	.	G	GT	438.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.034;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.8;SOR=0.829	GT:AD:DP:GQ:PL	0/1:22,23:47:99:467,0,378
chr2	242688442	.	T	TC	402.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.845;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=9.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.11;ReadPosRankSum=2;SOR=1.284	GT:AD:DP:GQ:PL	0/1:10,15:25:99:431,0,269
chr3	239313	.	C	CG	148.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.25;ReadPosRankSum=-0.124;SOR=0.252	GT:AD:DP:GQ:PL	0/1:24,11:35:99:177,0,596
chr3	239555	.	C	CT	766.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.43;ReadPosRankSum=0.587;SOR=0.99	GT:AD:DP:GQ:PL	0/1:50,41:125:99:795,0,898
chr3	386149	.	A	AACAC	268.8	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.1;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:21:297,21,0
chr3	402273	.	C	CT	55.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.82;QD=13.76;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,4:4:12:83,12,0
chr3	430729	.	GA	G	52.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	1339465	.	CCTAACT	C	408.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.49;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=1.86;QD=17.03;ReadPosRankSum=-0.846;SOR=0.693	GT:AD:DP:GQ:PL	0/1:12,12:24:99:437,0,647
chr3	1339680	.	GGTTTTT	G	1900.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.36;QD=20.01;ReadPosRankSum=-0.451;SOR=0.731	GT:AD:DP:GQ:PL	0/1:45,50:95:99:1929,0,2429
chr3	1415811	.	TAAAAC	T	1202.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.716;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=7.308;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.87;ReadPosRankSum=0.289;SOR=2.914	GT:AD:DP:GQ:PL	0/1:24,31:55:99:1231,0,1471
chr3	3095784	.	A	AC	332.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.304;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=0.93;QD=13.87;ReadPosRankSum=-1.055;SOR=1.051	GT:AD:DP:GQ:PL	0/1:10,14:24:99:361,0,239
chr3	3137155	.	A	AT	609.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.05;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=7.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.48;ReadPosRankSum=0.519;SOR=2.857	GT:AD:DP:GQ:PL	0/1:5,28:35:0:635,0,0
chr3	3171713	.	G	GCCTGACT	2553.77	PASS	AC=2;AF=1;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=32.14;SOR=2.604	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2582,174,0
chr3	3192524	.	A	ATAAC	3693.77	PASS	AC=2;AF=1;AN=2;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=5.811	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3722,252,0
chr3	3196273	.	AT	A	152.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.83;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:181,21,0
chr3	3216721	.	T	TG	331.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=4.407	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,8:8:24:1|1:3216714_T_A:360,24,0
chr3	3216723	.	G	GGA	444.77	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=4.407	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,8:8:33:1|1:3216714_T_A:473,33,0
chr3	3216724	.	C	CT	444.77	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.47;SOR=4.615	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,9:9:33:1|1:3216714_T_A:473,33,0
chr3	3217128	.	AT	A	100.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=16.81;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:129,18,0
chr3	3221573	.	G	GAACGCC	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	4110440	.	T	TAAG	875.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.83;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.14;QD=16.52;ReadPosRankSum=-1.235;SOR=0.751	GT:AD:DP:GQ:PL	0/1:29,24:53:99:904,0,1177
chr3	4687470	.	G	GCT	313.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.47;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.54;ReadPosRankSum=1.43;SOR=3.229	GT:AD:DP:GQ:PL	0/1:1,10:11:5:341,0,5
chr3	4725619	.	CA	C	789.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=28.68;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,22:22:66:818,66,0
chr3	4738999	.	G	GGTGTGT	746.77	PASS	AC=2;AF=1;AN=2;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.5;QD=30.9;SOR=3.716	GT:AD:DP:GQ:PL	1/1:0,15:20:35:743,35,0
chr3	4769090	.	AC	A	15.88	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=1.07;QD=2.27;ReadPosRankSum=0;SOR=0.027	GT:AD:DP:GQ:PL	0/1:5,2:7:44:44,0,176
chr3	4872811	.	T	TCACACACACA	210.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.88;MQRankSum=-1.668;QD=21.08;ReadPosRankSum=2.82;SOR=1.085	GT:AD:DP:GQ:PGT:PID:PL	0/1:4,6:10:99:0|1:4872811_T_TCACACACACA:239,0,151
chr3	4878419	.	CTTTTTTTTTTTT	C,CT	1521.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.51;QD=33.14;SOR=2.833	GT:AD:DP:GQ:PL	1/2:0,9,29:38:91:1550,714,605,204,0,91
chr3	5022870	.	TACACACACAC	T	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=27.13;SOR=1.179	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:5022870_TACACACACAC_T:135,9,0
chr3	5024415	.	A	AT	239.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=0.625;SOR=2.179	GT:AD:DP:GQ:PL	0/1:4,13:17:28:268,0,28
chr3	5025514	.	G	GGTGT,GGTGTGT	406.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.49;MQRankSum=0.603;QD=33.9;ReadPosRankSum=0.58;SOR=0.818	GT:AD:DP:GQ:PL	1/2:1,7,4:12:75:435,75,91,174,0,211
chr3	5170356	.	GA	G	112.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.14;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-0.631;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,5:12:99:0|1:5170332_A_C:141,0,190
chr3	5249962	.	G	GT	701.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DP=399;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.42;QD=2.48;ReadPosRankSum=-0.3;SOR=0.734	GT:AD:DP:GQ:PL	0/1:219,64:329:99:730,0,4317
chr3	5291669	.	C	CA	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.6;ReadPosRankSum=-1.15;SOR=2.833	GT:AD:DP:GQ:PL	0/1:3,5:8:29:65,0,29
chr3	6904409	.	T	TC	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.25;ReadPosRankSum=-0.481;SOR=2.8	GT:AD:DP:GQ:PL	0/1:8,3:11:53:53,0,202
chr3	6904414	.	C	CT	170.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=1.43;SOR=0.916	GT:AD:DP:GQ:PL	0/1:4,8:12:99:199,0,102
chr3	6904812	.	G	GT	843.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=4.403;MLEAC=1;MLEAF=0.5;MQ=60.5;MQRankSum=2.2;QD=9.81;ReadPosRankSum=-0.623;SOR=0.155	GT:AD:DP:GQ:PL	0/1:41,45:86:99:872,0,708
chr3	7494245	.	TTG	T	164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.155;SOR=1.802	GT:AD:DP:GQ:PL	0/1:7,7:16:99:193,0,184
chr3	7494716	.	A	ATT	50.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.96;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=-0.598;SOR=0.693	GT:AD:DP:GQ:PL	0/1:3,3:6:50:79,0,50
chr3	7732726	.	AT	A	1036.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0;DP=146;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=0.233;SOR=0.59	GT:AD:DP:GQ:PL	0/1:59,59:122:99:1065,0,1174
chr3	8543713	.	G	GT	5226.77	PASS	AC=2;AF=1;AN=2;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.59;QD=33.5;SOR=1.55	GT:AD:DP:GQ:PL	1/1:0,156:156:99:5255,478,0
chr3	8668223	.	GC	G	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:41:71,0,41
chr3	8669367	.	TG	T	930.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.443;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.26;ReadPosRankSum=-0.326;SOR=0.562	GT:AD:DP:GQ:PL	0/1:28,33:61:99:959,0,764
chr3	8757576	.	C	CA	179.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=0.849;QD=11.98;ReadPosRankSum=-0.431;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,10:15:67:208,0,67
chr3	8784046	.	C	CA	81.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=5.74;MLEAC=1;MLEAF=0.5;MQ=61.43;MQRankSum=0.996;QD=9.1;ReadPosRankSum=0.065;SOR=3.611	GT:AD:DP:GQ:PL	0/1:4,5:15:72:110,0,72
chr3	8955647	.	G	GAGTCA	63.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	9102112	.	C	CTTTT	1000.77	PASS	AC=2;AF=1;AN=2;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=30.77;SOR=5.61	GT:AD:DP:GQ:PL	1/1:0,8:33:83:800,83,0
chr3	9483036	.	AT	A	37.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:64,9,0
chr3	9730529	.	G	GT	403.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.39;ClippingRankSum=0;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=2.01;QD=2.51;ReadPosRankSum=-1.337;SOR=0.726	GT:AD:DP:GQ:PL	0/1:125,36:188:99:432,0,2410
chr3	9743398	.	TGGAG	T	2976.77	PASS	AC=2;AF=1;AN=2;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=30.51;SOR=2.799	GT:AD:DP:GQ:PL	1/1:0,67:67:99:3005,202,0
chr3	9757582	.	CCCT	C	2177.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.716;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.16;ReadPosRankSum=0.755;SOR=0.517	GT:AD:DP:GQ:PGT:PID:PL	0/1:51,57:108:99:0|1:9757582_CCCT_C:2206,0,2054
chr3	9757586	.	ATGGGCCTCACTT	A	2148.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.54;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.91;ReadPosRankSum=1.62;SOR=0.578	GT:AD:DP:GQ:PGT:PID:PL	0/1:63,57:120:99:0|1:9757582_CCCT_C:2177,0,2462
chr3	9852059	.	C	CGAT	395.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=1.01;QD=19.79;ReadPosRankSum=0.266;SOR=0.175	GT:AD:DP:GQ:PL	0/1:9,11:20:99:424,0,345
chr3	9946023	.	T	TA	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:56:67,0,56
chr3	9958947	.	T	TG	110.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.32;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.437;SOR=2.179	GT:AD:DP:GQ:PL	0/1:5,6:11:99:139,0,111
chr3	9969632	.	C	CA	30.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.85;ReadPosRankSum=1.1;SOR=0.148	GT:AD:DP:GQ:PL	0/1:4,4:8:29:59,0,29
chr3	9969932	.	TGG	T	4759.77	PASS	AC=2;AF=1;AN=2;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=33.27;SOR=1.402	GT:AD:DP:GQ:PL	1/1:0,108:108:99:4788,325,0
chr3	10088407	.	AG	A	385.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.96;MQRankSum=1.26;QD=9.64;ReadPosRankSum=-1.536;SOR=0.809	GT:AD:DP:GQ:PGT:PID:PL	0/1:28,12:40:99:0|1:10088404_C_T:414,0,1203
chr3	10088409	.	TAAG	T	391.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.638;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.96;MQRankSum=1.26;QD=9.79;ReadPosRankSum=-1.61;SOR=0.809	GT:AD:DP:GQ:PGT:PID:PL	0/1:28,12:40:99:0|1:10088404_C_T:420,0,1140
chr3	10089549	.	TACTA	T	1200.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=23.734;MLEAC=1;MLEAF=0.5;MQ=53.92;MQRankSum=-9.722;QD=11.22;ReadPosRankSum=-2.032;SOR=4.44	GT:AD:DP:GQ:PL	0/1:72,35:107:99:1229,0,3062
chr3	10094206	.	AT	A	77.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.35;MQRankSum=0.75;QD=2.99;ReadPosRankSum=-1.926;SOR=0.693	GT:AD:DP:GQ:PL	0/1:18,8:26:99:106,0,368
chr3	10101851	.	C	CA	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.52;ReadPosRankSum=0.229;SOR=0.527	GT:AD:DP:GQ:PL	0/1:11,6:20:71:71,0,208
chr3	10143061	.	C	CT	134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.314;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.75;QD=10.37;ReadPosRankSum=-0.443;SOR=2.584	GT:AD:DP:GQ:PL	0/1:5,8:25:99:106,0,114
chr3	10144526	.	CA	C	26.54	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;MQRankSum=0.319;QD=6.64;ReadPosRankSum=0.319;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,3:4:2:52,2,0
chr3	10188010	.	AC	A	22.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.464;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.01;MQRankSum=-1.15;QD=2.85;ReadPosRankSum=1.24;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,2:8:51:51,0,200
chr3	10261138	.	GACT	G	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.49;MQRankSum=0.084;QD=22.29;ReadPosRankSum=-1.282;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,4:6:93:162,0,93
chr3	10283670	.	G	GA	27.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.16;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.09;ReadPosRankSum=0.12;SOR=1.609	GT:AD:DP:GQ:PL	0/1:5,4:9:56:56,0,84
chr3	10318230	.	A	AT	172.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.64;ReadPosRankSum=-0.992;SOR=0.061	GT:AD:DP:GQ:PL	0/1:13,7:20:99:201,0,422
chr3	11685143	.	T	TA	29.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.96;ReadPosRankSum=-1.036;SOR=0.132	GT:AD:DP:GQ:PL	0/1:3,3:6:48:58,0,48
chr3	11744544	.	G	GA	687.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=27.51;SOR=2.584	GT:AD:DP:GQ:PL	1/1:0,25:25:75:716,75,0
chr3	12229237	.	TG	T	535.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.88;QD=31.52;SOR=2.712	GT:AD:DP:GQ:PL	1/1:0,17:17:51:564,51,0
chr3	12229268	.	TTG	T	228.78	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,8:8:24:257,24,0
chr3	12557945	.	ATGTG	A,ATG	405.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=31.21;SOR=5.283	GT:AD:DP:GQ:PL	1/2:0,7,6:13:99:434,149,152,187,0,148
chr3	12614092	.	A	AT	22.58	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=11.29;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	12618432	.	GTTT	G	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.95;ReadPosRankSum=0.524;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,83
chr3	12629336	.	C	CT	30.54	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=7.63;ReadPosRankSum=-1.15;SOR=1.609	GT:AD:DP:GQ:PL	1/1:1,3:4:2:56,2,0
chr3	12633424	.	ATT	A	75.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.05;ReadPosRankSum=-0.293;SOR=0.033	GT:AD:DP:GQ:PL	0/1:10,5:17:99:104,0,282
chr3	12942850	.	GC	G	196.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr3	12944158	.	CA	C	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=0;QD=2.47;ReadPosRankSum=0.813;SOR=2.267	GT:AD:DP:GQ:PL	0/1:20,9:29:99:100,0,507
chr3	12944170	.	C	CA	126.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=0;QD=6.67;ReadPosRankSum=1.41;SOR=1.079	GT:AD:DP:GQ:PL	0/1:11,8:35:99:155,0,328
chr3	13361040	.	A	AGAG	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:44:81,0,44
chr3	13393166	.	CT	C	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.35;ReadPosRankSum=-0.291;SOR=0.148	GT:AD:DP:GQ:PL	0/1:4,4:8:64:71,0,64
chr3	13574068	.	AC	A	1507.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0;DP=132;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.975;QD=12.89;ReadPosRankSum=-1.441;SOR=0.329	GT:AD:DP:GQ:PL	0/1:56,61:117:99:1536,0,1386
chr3	13611731	.	G	GC	445.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=1.11;QD=17.14;ReadPosRankSum=-1.052;SOR=0.132	GT:AD:DP:GQ:PL	0/1:9,17:26:99:474,0,216
chr3	13916233	.	C	CCTCTGTCA	63.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	14105885	.	GCAGCAGCAGCCC	G	35.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-1.922;QD=3.25;ReadPosRankSum=0.191;SOR=2.8	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,3:11:64:0|1:14105882_C_A:64,0,559
chr3	14106310	.	T	TCCAGCACCAGCAGTC	217.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.1;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=63.82;MQRankSum=1.24;QD=27.22;ReadPosRankSum=-2.1;SOR=1.061	GT:AD:DP:GQ:PL	0/1:2,6:8:99:246,0,104
chr3	14170807	.	TA	T	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.26;MQRankSum=1.02;QD=5.23;ReadPosRankSum=2.03;SOR=0.976	GT:AD:DP:GQ:PL	0/1:6,6:14:67:91,0,67
chr3	14486017	.	TC	T	80.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.19;ReadPosRankSum=1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:28:109,0,28
chr3	14486563	.	TA	T	197.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.48;ReadPosRankSum=-1.534;SOR=0.105	GT:AD:DP:GQ:PL	0/1:5,7:12:99:226,0,151
chr3	14509887	.	C	CA	144.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:173,15,0
chr3	14509925	.	CT	C	20	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,1:1:3:1|1:14509925_CT_C:45,3,0
chr3	14526612	.	AT	A	61.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.19;MQRankSum=0.489;QD=7.72;ReadPosRankSum=0.272;SOR=1.329	GT:AD:DP:GQ:PL	0/1:3,5:8:50:90,0,50
chr3	14536505	.	CAGA	C	1769.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DP=95;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.5;MQ=61.24;MQRankSum=3.26;QD=19.45;ReadPosRankSum=-1.466;SOR=0.503	GT:AD:DP:GQ:PL	0/1:42,49:91:99:1798,0,1790
chr3	14538072	.	CA	C	2015.77	PASS	AC=2;AF=1;AN=2;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.78;QD=32.95;SOR=2.345	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2044,166,0
chr3	14555758	.	C	CAGTT	893.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.951;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.08;QD=17.88;ReadPosRankSum=-1.768;SOR=0.576	GT:AD:DP:GQ:PL	0/1:26,24:50:99:922,0,979
chr3	14561389	.	T	TG	102.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr3	14561627	.	A	AG	2373.77	PASS	AC=2;AF=1;AN=2;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.62;QD=27.81;SOR=1.716	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2402,205,0
chr3	14583669	.	A	AT	646.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=0.241;SOR=0.941	GT:AD:DP:GQ:PL	0/1:43,33:78:99:675,0,798
chr3	14702848	.	A	AT	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=2.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.48;ReadPosRankSum=-0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:7,3:10:53:53,0,131
chr3	15127522	.	CTAG	C	469.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.2;ReadPosRankSum=-0.747;SOR=0.481	GT:AD:DP:GQ:PL	0/1:16,13:29:99:498,0,633
chr3	15132717	.	C	CAAAA	63.56	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	15373832	.	TTCC	T	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.283;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=10.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.09;ReadPosRankSum=-1.076;SOR=1.426	GT:AD:DP:GQ:PL	0/1:26,4:30:91:91,0,1074
chr3	15508160	.	T	TCTGTC	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.29;ReadPosRankSum=0.842;SOR=1.179	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,256
chr3	15613336	.	C	CT	228.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.436;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.395;QD=13.46;ReadPosRankSum=-0.232;SOR=0.311	GT:AD:DP:GQ:PL	0/1:7,10:40:99:119,0,176
chr3	15838150	.	G	GTT	84.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=64.19;QD=21.01;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,4:4:12:112,12,0
chr3	15901053	.	CT	C	173.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr3	16269201	.	TAA	T	159.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.4;SOR=0.346	GT:AD:DP:GQ:PL	0/1:6,8:15:99:188,0,161
chr3	16312716	.	GT	G	229.77	PASS	AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=22.98;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,10:10:30:258,30,0
chr3	16313597	.	C	CT	677.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=6.398;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.853;QD=8.07;ReadPosRankSum=0.142;SOR=0.297	GT:AD:DP:GQ:PL	0/1:46,38:112:99:706,0,885
chr3	16313948	.	TA	T	56.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:83,9,0
chr3	16636093	.	TA	T	274.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.23;ReadPosRankSum=-1.389;SOR=1.179	GT:AD:DP:GQ:PL	0/1:20,18:43:99:303,0,392
chr3	16640294	.	CT	C	59.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=14.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:87,12,0
chr3	16645882	.	A	AG	241.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=1.35;QD=8.34;ReadPosRankSum=-0.517;SOR=0.903	GT:AD:DP:GQ:PL	0/1:18,11:29:99:270,0,526
chr3	17255493	.	C	CTTT	58.53	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=19.51;ReadPosRankSum=-0.431;SOR=0.223	GT:AD:DP:GQ:PL	1/1:1,2:3:2:84,2,0
chr3	17279462	.	TA	T	186.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.97;QD=20.75;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:215,27,0
chr3	17413531	.	A	AAAACAAACAAACAAAC	2864.77	PASS	AC=2;AF=1;AN=2;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.07;QD=28.41;SOR=2.409	GT:AD:DP:GQ:PL	1/1:0,44:44:99:2893,200,0
chr3	19556990	.	AT	A	71.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=14.38;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:100,15,0
chr3	19924372	.	A	AC	99.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.405;SOR=0.412	GT:AD:DP:GQ:PL	0/1:6,4:10:99:128,0,169
chr3	19977500	.	C	CAA	75.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=0.464;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,4:8:39:102,0,39
chr3	19977829	.	G	GAA	604.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.222;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.94;ReadPosRankSum=0.581;SOR=0.582	GT:AD:DP:GQ:PL	1/1:1,9:24:33:490,33,0
chr3	20025665	.	G	GA,GGA	691.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.869;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.65;MQRankSum=0;QD=22.32;ReadPosRankSum=-1.14;SOR=1.402	GT:AD:DP:GQ:PL	1/2:1,14,16:35:99:720,414,524,351,0,444
chr3	20188162	.	A	ATT	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,3:3:9:1|1:20188162_A_ATT:135,9,0
chr3	21553315	.	AT	A	1091.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.796;QD=9.93;ReadPosRankSum=0.598;SOR=0.371	GT:AD:DP:GQ:PL	0/1:50,60:132:99:1120,0,1013
chr3	21606027	.	AT	A	193.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=3.624;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.967;QD=8.42;ReadPosRankSum=0.322;SOR=1.516	GT:AD:DP:GQ:PL	0/1:11,12:25:99:222,0,210
chr3	23942132	.	C	CA	115.77	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.4;QD=19.29;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,6:8:3:106,3,0
chr3	23963063	.	T	TG	98.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.95;ReadPosRankSum=-0.931;SOR=1.152	GT:AD:DP:GQ:PL	0/1:14,11:25:99:127,0,264
chr3	23987002	.	A	AGGC	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	25611472	.	GACAC	G	395.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.74;ReadPosRankSum=2.63;SOR=0.627	GT:AD:DP:GQ:PL	0/1:6,10:23:99:403,0,226
chr3	25639973	.	A	AT	637.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.53;QD=9.11;ReadPosRankSum=0.642;SOR=0.832	GT:AD:DP:GQ:PL	0/1:37,33:70:99:666,0,713
chr3	25761373	.	A	AT	530.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.69;MQRankSum=0.5;QD=21.23;ReadPosRankSum=0.045;SOR=0.914	GT:AD:DP:GQ:PL	1/1:2,23:28:40:559,40,0
chr3	25779035	.	A	AT	39.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=58.52;MQRankSum=-1.383;QD=4.42;ReadPosRankSum=-0.12;SOR=1.518	GT:AD:DP:GQ:PL	0/1:5,4:9:68:68,0,79
chr3	27296994	.	TA	T	46.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=15.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:73,9,0
chr3	27326553	.	AC	A	727.77	PASS	AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,19:19:57:756,57,0
chr3	27332409	.	CTCAAAACA	C	197.9	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:226,15,0
chr3	27350635	.	G	GTTT	103.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr3	27352213	.	G	GA	53.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.73;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chr3	27363637	.	T	TA	652.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;MQRankSum=0.415;QD=21.06;ReadPosRankSum=-0.942;SOR=0.818	GT:AD:DP:GQ:PL	1/1:3,28:34:33:681,33,0
chr3	27387462	.	G	GGTAA	1456.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=4.68	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,32:32:99:1|1:27387462_G_GGTAA:1485,99,0
chr3	27759322	.	TA	T	615.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=0.523;QD=18.11;ReadPosRankSum=1.2;SOR=1.007	GT:AD:DP:GQ:PL	1/1:4,30:42:33:635,33,0
chr3	27762022	.	C	CAA	16.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.65;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:17:45,0,17
chr3	28373462	.	C	CA	458.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0.931;QD=11.76;ReadPosRankSum=-0.425;SOR=0.631	GT:AD:DP:GQ:PL	0/1:17,22:39:99:487,0,290
chr3	28557206	.	CTG	C	959.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.99;ReadPosRankSum=1.31;SOR=2.765	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,26:40:99:0|1:28557206_CTG_C:988,0,309
chr3	29322966	.	C	CT	157.77	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=33.96;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:7:20:131,20,0
chr3	29529913	.	TTC	T	2173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=3.84;QD=15.64;ReadPosRankSum=-0.869;SOR=0.714	GT:AD:DP:GQ:PGT:PID:PL	0/1:77,62:139:99:0|1:29529907_G_A:2202,0,3562
chr3	29628718	.	G	GTT	128.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.26;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.72;MQRankSum=-0.674;QD=16.1;ReadPosRankSum=-1.383;SOR=1.911	GT:AD:DP:GQ:PL	0/1:5,3:10:99:157,0,246
chr3	29781465	.	C	CA	116.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.538;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,7:21:86:145,0,86
chr3	29922512	.	TC	T	134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.36;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.258;SOR=0.368	GT:AD:DP:GQ:PL	0/1:5,6:11:99:163,0,130
chr3	30045552	.	CAATT	C	286.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr3	30842298	.	GACACAC	G,GAC	725.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=57.9;QD=24.69;SOR=4.514	GT:AD:DP:GQ:PL	1/2:0,9,10:19:99:754,276,257,207,0,154
chr3	30842346	.	AAGAGAG	A,AAG	1643.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.08;QD=28.95;SOR=2.948	GT:AD:DP:GQ:PL	1/2:0,7,33:40:88:1672,1144,1086,209,0,88
chr3	30842597	.	A	AT	2636.77	PASS	AC=2;AF=1;AN=2;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=32.96;SOR=4.461	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2665,241,0
chr3	30880375	.	CACAA	C	211.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.573;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.18;ReadPosRankSum=-2.1;SOR=1.085	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,173
chr3	31621228	.	T	TAAA	1038.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=6.358	GT:AD:DP:GQ:PL	1/1:0,23:23:72:1067,72,0
chr3	31663515	.	A	AGTGTG	4716.77	PASS	AC=2;AF=1;AN=2;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=28.42;SOR=4.804	GT:AD:DP:GQ:PL	1/1:0,94:94:99:4745,325,0
chr3	31666256	.	CT	C	65.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.725;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.674;QD=6.58;ReadPosRankSum=0.7;SOR=0.25	GT:AD:DP:GQ:PL	0/1:5,5:10:94:94,0,105
chr3	32022333	.	G	GCA	16.86	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.619;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.11;ReadPosRankSum=0.619;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,2:8:45:45,0,187
chr3	32483653	.	TG	T	28.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.8;ReadPosRankSum=-0.431;SOR=0.307	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,130
chr3	32568145	.	C	CCA	172.84	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:201,18,0
chr3	32758761	.	TTG	T	1367.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=7.226;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.51;QD=16.68;ReadPosRankSum=-0.864;SOR=0.196	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1396,0,1593
chr3	32758895	.	A	AT	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.96;ReadPosRankSum=-0.842;SOR=0.061	GT:AD:DP:GQ:PL	0/1:3,2:5:49:53,0,49
chr3	32761749	.	CT	C	479.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.08;QD=8.88;ReadPosRankSum=0.45;SOR=0.61	GT:AD:DP:GQ:PL	0/1:28,26:54:99:508,0,593
chr3	32769471	.	TTTTATTTATTTA	T	493.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.084;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.849;QD=18.99;ReadPosRankSum=0.361;SOR=0.859	GT:AD:DP:GQ:PL	0/1:12,14:26:99:522,0,540
chr3	32933360	.	C	CTT	2149.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0;DP=391;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0;QD=7.99;ReadPosRankSum=4.22;SOR=0.529	GT:AD:DP:GQ:PL	0/1:183,86:280:99:2178,0,7350
chr3	32933370	.	CTT	C	2618.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0;DP=323;ExcessHet=3.0103;FS=8.339;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0;QD=10.03;ReadPosRankSum=3.22;SOR=0.319	GT:AD:DP:GQ:PL	0/1:163,98:261:99:2647,0,6645
chr3	33093095	.	C	CAA	20.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.16;ReadPosRankSum=0;SOR=0.061	GT:AD:DP:GQ:PL	0/1:3,2:5:49:49,0,65
chr3	33454073	.	CA	C	190.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.11;QD=5.78;ReadPosRankSum=-1.45;SOR=1.528	GT:AD:DP:GQ:PL	0/1:20,13:38:99:219,0,343
chr3	33592978	.	A	AT	74.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=1.42;QD=4.67;ReadPosRankSum=1.31;SOR=0.307	GT:AD:DP:GQ:PL	0/1:10,6:16:99:103,0,182
chr3	33612364	.	TA	T	55.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.699;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.65;ReadPosRankSum=0.321;SOR=1.473	GT:AD:DP:GQ:PL	0/1:5,7:15:84:84,0,120
chr3	33618551	.	G	GA	128.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.47;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:157,18,0
chr3	33626219	.	TA	T	173.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.602;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.18;QD=2.85;ReadPosRankSum=-1.154;SOR=0.441	GT:AD:DP:GQ:PL	0/1:45,16:79:99:202,0,943
chr3	33668662	.	ATTAAGT	A	1141.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.91;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.03;ReadPosRankSum=0.531;SOR=0.827	GT:AD:DP:GQ:PL	0/1:30,30:60:99:1170,0,2236
chr3	33674094	.	GT	G	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=-1.383;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr3	33704689	.	C	CAA	12.05	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.01;ReadPosRankSum=-0.253;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,2:6:40:40,0,81
chr3	33852388	.	AT	A	16.65	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=8.33;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:43,6,0
chr3	33879602	.	CTA	C	676.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.367;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=0;QD=19.34;ReadPosRankSum=0.985;SOR=0.749	GT:AD:DP:GQ:PL	0/1:17,18:35:99:705,0,702
chr3	33907835	.	T	TCTCC	1482.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.571;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=3.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.85;ReadPosRankSum=-0.397;SOR=1.109	GT:AD:DP:GQ:PL	0/1:53,35:88:99:1511,0,2667
chr3	36422392	.	G	GGACCCGCCGAGACTTGAACGTCCGGTAA	255.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.58;ReadPosRankSum=-1.44;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,7:10:99:284,0,624
chr3	36570259	.	TA	T	373.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.34;ReadPosRankSum=3;SOR=0.582	GT:AD:DP:GQ:PL	0/1:33,26:66:99:402,0,768
chr3	36934343	.	CAT	C	176.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.61;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.07;ReadPosRankSum=-0.146;SOR=0.76	GT:AD:DP:GQ:PGT:PID:PL	0/1:17,8:25:99:0|1:36934343_CAT_C:205,0,681
chr3	37369771	.	ACTCT	A	244.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.48;ReadPosRankSum=1.59;SOR=1.828	GT:AD:DP:GQ:PL	0/1:7,7:14:99:273,0,347
chr3	37376500	.	C	CT	74.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.8;ReadPosRankSum=0.542;SOR=0.061	GT:AD:DP:GQ:PL	0/1:7,4:11:99:103,0,141
chr3	37378670	.	C	CT	71.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.99;ReadPosRankSum=0.696;SOR=0.117	GT:AD:DP:GQ:PL	0/1:18,6:28:99:100,0,311
chr3	37388577	.	C	CA	338.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.733;SOR=0.507	GT:AD:DP:GQ:PL	0/1:15,12:27:99:367,0,480
chr3	37560577	.	C	CT	277.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.86;ReadPosRankSum=-0.385;SOR=1.022	GT:AD:DP:GQ:PL	0/1:1,8:10:29:306,0,29
chr3	38025453	.	T	TA	48.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.655;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.42;ReadPosRankSum=-0.12;SOR=0.148	GT:AD:DP:GQ:PL	0/1:5,4:9:77:77,0,77
chr3	38137959	.	G	GT	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.5;MQ=60.6;MQRankSum=1.32;QD=3.32;ReadPosRankSum=0.328;SOR=0.033	GT:AD:DP:GQ:PL	0/1:10,5:17:78:78,0,202
chr3	38355176	.	T	TGTGTGTGTGTGTGCGCGCGC,TGTGTGTGTGTGTGTGCGCGCGC	1047.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=58.09;MQRankSum=2.45;QD=27.15;ReadPosRankSum=-0.227;SOR=1.981	GT:AD:DP:GQ:PL	1/2:1,12,8:23:99:1076,264,263,338,0,407
chr3	38359993	.	T	TA	131.84	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=21.97;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,6:6:18:160,18,0
chr3	38411731	.	G	GCACACACACA,GCACACACACACA	811.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.62;QD=27.97;SOR=5.892	GT:AD:DP:GQ:PL	1/2:0,5,13:18:83:840,356,300,139,0,83
chr3	38539095	.	CTT	C	1249.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0;DP=135;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.662;QD=15.62;ReadPosRankSum=-1.576;SOR=0.467	GT:AD:DP:GQ:PL	0/1:33,47:113:99:1278,0,1140
chr3	38593128	.	TG	T	109.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=-1.152;SOR=1.493	GT:AD:DP:GQ:PL	0/1:7,7:20:99:138,0,320
chr3	38627153	.	G	GGTGTGTGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGTGTGTGTGTGT	1191.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=58.85;QD=32.63;SOR=3.16	GT:AD:DP:GQ:PL	1/2:0,5,16:21:83:1220,458,374,167,0,83
chr3	38627658	.	T	TC,TCC	306.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.72;QD=27.89;SOR=4.977	GT:AD:DP:GQ:PL	1/2:0,6,5:11:99:335,141,110,152,0,135
chr3	38938299	.	C	CT	678.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.623;QD=14.44;ReadPosRankSum=0.2;SOR=0.801	GT:AD:DP:GQ:PL	0/1:15,32:59:99:707,0,164
chr3	39093773	.	CGG	C	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	39110376	.	T	TA	563.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-0.99;SOR=0.441	GT:AD:DP:GQ:PL	0/1:36,32:68:99:592,0,614
chr3	39125609	.	CTTAATA	C	980.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.57;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.5;MQ=60.76;MQRankSum=2.04;QD=18.51;ReadPosRankSum=1.02;SOR=0.948	GT:AD:DP:GQ:PL	0/1:26,27:53:99:1009,0,997
chr3	39167966	.	TACAC	T	340.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.61;QD=32.78;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,8:10:24:349,24,0
chr3	39168117	.	TACAC	T	108.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.93;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	39174438	.	G	GA	332.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.12;SOR=0.914	GT:AD:DP:GQ:PGT:PID:PL	0/1:18,10:28:99:0|1:39174437_T_A:361,0,1180
chr3	39308279	.	AT	A	223.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1.31;QD=4.86;ReadPosRankSum=-1.566;SOR=1.044	GT:AD:DP:GQ:PL	0/1:28,18:46:99:252,0,946
chr3	39437702	.	G	GA	56.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60.73;MQRankSum=0.253;QD=11.35;ReadPosRankSum=0.524;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,4:5:30:85,0,30
chr3	39450276	.	C	CAT	1418.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.457;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.59;ReadPosRankSum=0.448;SOR=1.191	GT:AD:DP:GQ:PL	0/1:51,40:91:99:1447,0,1971
chr3	39452944	.	AT	A	24.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.29;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0
chr3	40352355	.	ATT	A,AT	979.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=18.49;ReadPosRankSum=0.584;SOR=1.296	GT:AD:DP:GQ:PL	1/2:2,13,38:53:99:1008,701,791,223,0,120
chr3	40353425	.	CAG	C	1139.77	PASS	AC=2;AF=1;AN=2;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.8;QD=34.53;SOR=2.066	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1168,81,0
chr3	40442574	.	AGAGGTCC	A	1037.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.86;SOR=4.091	GT:AD:DP:GQ:PL	1/1:0,24:24:73:1066,73,0
chr3	40498720	.	TACGC	T	1189.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=27.4;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,28:28:84:1|1:40498720_TACGC_T:1218,84,0
chr3	40503520	.	A	ACTGCTG,ACTGCTGCTG	3428.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=48.55;QD=29.27;SOR=0.971	GT:AD:DP:GQ:PL	1/2:0,9,62:71:99:3457,2561,2412,391,0,156
chr3	40503864	.	C	CTTTT	58.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	40525457	.	CT	C	54.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	40528191	.	C	CA	45.22	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.2;MQRankSum=1.28;QD=9.04;ReadPosRankSum=-0.524;SOR=0.693	GT:AD:DP:GQ:PL	1/1:1,4:5:4:72,4,0
chr3	40557307	.	GTGTGA	G	83.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.781;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=6.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.64;ReadPosRankSum=0.892;SOR=0.022	GT:AD:DP:GQ:PL	0/1:19,4:25:99:112,0,785
chr3	40557309	.	GT	G	358.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.31;ReadPosRankSum=1.01;SOR=3.716	GT:AD:DP:GQ:PL	0/1:6,16:24:99:387,0,170
chr3	40557311	.	GA	G	352.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.685;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=0.844;SOR=2.948	GT:AD:DP:GQ:PL	0/1:8,16:24:99:381,0,224
chr3	41439879	.	CT	C	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.15;ReadPosRankSum=-0.312;SOR=0.093	GT:AD:DP:GQ:PL	0/1:7,5:12:66:66,0,138
chr3	41841811	.	T	TATTA	727.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=-0.764;SOR=0.25	GT:AD:DP:GQ:PL	0/1:28,20:48:99:756,0,1219
chr3	41861013	.	GA	G	1016.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.22;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=5.499;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.25;QD=10.48;ReadPosRankSum=-0.843;SOR=0.318	GT:AD:DP:GQ:PL	0/1:43,54:100:99:1045,0,940
chr3	41877473	.	C	CAAA	296.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.73;ReadPosRankSum=-1.007;SOR=0.148	GT:AD:DP:GQ:PL	0/1:5,7:20:99:283,0,193
chr3	41923513	.	GA	G	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.262;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=-0.545;SOR=0.105	GT:AD:DP:GQ:PGT:PID:PL	0/1:5,4:9:99:0|1:41923513_GA_G:150,0,518
chr3	41923515	.	GGCCA	G	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.156;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0;SOR=0.078	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,4:10:99:0|1:41923513_GA_G:150,0,518
chr3	41925260	.	CAGAGAAAAAACAAGTGA	C	568.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.9;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=0.791;SOR=0.343	GT:AD:DP:GQ:PL	0/1:25,16:41:99:597,0,1796
chr3	41960087	.	CTT	C	230.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-0.162;QD=23.08;ReadPosRankSum=-0.721;SOR=2.419	GT:AD:DP:GQ:PL	0/1:2,8:21:89:240,0,89
chr3	41977488	.	CCT	C	1987.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-4.22;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.841;QD=23.39;ReadPosRankSum=-0.498;SOR=0.672	GT:AD:DP:GQ:PGT:PID:PL	0/1:34,51:85:99:1|0:41977464_A_C:2016,0,1348
chr3	41978640	.	AG	A	100.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=0.674;QD=12.6;ReadPosRankSum=-0.949;SOR=3.258	GT:AD:DP:GQ:PL	0/1:4,4:8:99:129,0,138
chr3	42166686	.	TA	T	33.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:24:62,0,24
chr3	42202050	.	G	GTT	62.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.99;ReadPosRankSum=-1.635;SOR=0.223	GT:AD:DP:GQ:PL	0/1:17,4:25:91:91,0,1135
chr3	42251577	.	CGGA	C	1475.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.13;QD=14.91;ReadPosRankSum=-0.473;SOR=0.724	GT:AD:DP:GQ:PL	0/1:58,41:105:99:1504,0,2246
chr3	42251868	.	CT	C	541.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.05;ReadPosRankSum=0.429;SOR=0.105	GT:AD:DP:GQ:PL	0/1:17,19:36:99:570,0,453
chr3	42608170	.	C	CA	48.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.88;QD=12.01;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:76,12,0
chr3	42660489	.	CTT	C	131.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.29;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.06;QD=5.49;ReadPosRankSum=0.965;SOR=0.693	GT:AD:DP:GQ:PL	0/1:17,7:34:99:160,0,542
chr3	42681445	.	A	ACT	178.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=29.8;ReadPosRankSum=-1.383;SOR=0.368	GT:AD:DP:GQ:PL	0/1:1,5:6:28:207,0,28
chr3	42948034	.	A	AGAGT	152.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.08;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	43621634	.	C	CA	18.59	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.1;ReadPosRankSum=-1.834;SOR=3.258	GT:AD:DP:GQ:PL	0/1:2,4:6:3:45,0,3
chr3	43756577	.	C	CTG,CTGTGTGTGTG	713.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.25;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=4.206;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=27.45;ReadPosRankSum=-0.331;SOR=2.77	GT:AD:DP:GQ:PL	1/2:5,10,11:35:99:742,476,579,168,0,472
chr3	44408864	.	G	GT	770.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.67;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=0.413;SOR=0.981	GT:AD:DP:GQ:PL	0/1:23,30:53:99:799,0,562
chr3	44540791	.	TTC	T	7778.77	PASS	AC=2;AF=1;AN=2;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.62;QD=31.38;SOR=0.746	GT:AD:DP:GQ:PL	1/1:0,193:193:99:7807,581,0
chr3	44803108	.	AAAGACAG	A	697.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.659;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=5.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.117;SOR=1.586	GT:AD:DP:GQ:PL	0/1:38,20:58:99:726,0,3189
chr3	44816952	.	CTT	C	626.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.708;QD=12.29;ReadPosRankSum=0.533;SOR=1.192	GT:AD:DP:GQ:PL	0/1:24,27:68:99:655,0,879
chr3	44826315	.	G	GT	370.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.065;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=2.05;SOR=0.941	GT:AD:DP:GQ:PL	0/1:22,20:42:99:399,0,396
chr3	44840612	.	A	AT	131.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=-0.12;SOR=2.303	GT:AD:DP:GQ:PL	0/1:4,5:9:99:160,0,123
chr3	44846477	.	GA	G	97.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.64;ReadPosRankSum=1.32;SOR=0.223	GT:AD:DP:GQ:PL	0/1:28,9:42:99:126,0,529
chr3	44959725	.	CGG	C,CG	741.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=29.67;SOR=2.584	GT:AD:DP:GQ:PL	1/2:0,15,10:25:99:770,250,232,416,0,348
chr3	45072604	.	GTC	G	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.38;SOR=0.105	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,78
chr3	45461102	.	G	GT	6290.77	PASS	AC=2;AF=1;AN=2;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=34;SOR=3.27	GT:AD:DP:GQ:PL	1/1:0,185:185:99:6319,562,0
chr3	45527508	.	T	TAAG	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	45636270	.	AACACACACACACAC	A,AACACAC	288.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=31.77;SOR=4.407	GT:AD:DP:GQ:PL	1/2:0,3,5:8:99:317,181,301,118,0,102
chr3	45677635	.	C	CT	4071.77	PASS	AC=2;AF=1;AN=2;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.92;SOR=1.664	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,87:87:99:1|1:45677635_C_CT:4100,280,0
chr3	45677638	.	CA	C	4128.77	PASS	AC=2;AF=1;AN=2;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.661	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,93:93:99:1|1:45677635_C_CT:4157,286,0
chr3	45677815	.	G	GAGA	1239.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.76;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=9.249;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.19;QD=15.5;ReadPosRankSum=-0.758;SOR=1.819	GT:AD:DP:GQ:PL	0/1:46,34:80:99:1268,0,1981
chr3	45715159	.	CT	C	881.77	PASS	AC=2;AF=1;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.67;QD=30.41;SOR=3.334	GT:AD:DP:GQ:PL	1/1:0,29:29:87:910,87,0
chr3	45744693	.	AT	A	79.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:107,12,0
chr3	45755731	.	TTG	T	97.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.14;SOR=0.859	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,7:9:21:0|1:45755730_T_G:126,0,21
chr3	45784972	.	GGT	G	6333.77	PASS	AC=2;AF=1;AN=2;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=29.56;SOR=4.484	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,143:143:99:1|1:45784963_T_C:6362,430,0
chr3	46026209	.	CA	C	935.77	PASS	AC=2;AF=1;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.83;QD=32.78;SOR=6.593	GT:AD:DP:GQ:PL	1/1:0,26:26:78:964,78,0
chr3	46245824	.	TA	T	288.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0;DP=148;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.27;QD=3.01;ReadPosRankSum=-1.655;SOR=0.588	GT:AD:DP:GQ:PL	0/1:74,22:121:99:317,0,1613
chr3	46487787	.	TTTGCACCCTTAAAATTA	T	904.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.88;MQRankSum=1.96;QD=19.25;ReadPosRankSum=-0.266;SOR=0.259	GT:AD:DP:GQ:PL	0/1:22,25:47:99:933,0,1297
chr3	46490733	.	T	TC	114.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:142,12,0
chr3	46501284	.	C	CCTT	7797.77	PASS	AC=2;AF=1;AN=2;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=33.71;SOR=1.147	GT:AD:DP:GQ:PL	1/1:0,178:178:99:7826,535,0
chr3	46569224	.	GT	G	21.59	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=10.79;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
chr3	46658515	.	G	GT	207.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=25.97;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,8:8:24:236,24,0
chr3	46751073	.	TAAG	T	565.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.13;QD=15.29;ReadPosRankSum=-0.141;SOR=1.112	GT:AD:DP:GQ:PL	0/1:21,16:39:99:594,0,838
chr3	47038135	.	C	CA	2436.77	PASS	AC=2;AF=1;AN=2;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.16;QD=30.64;SOR=0.899	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,62:62:99:1|1:47038135_C_CA:2465,186,0
chr3	47046219	.	TGTTCCCTGCCAACCCCCAGAG	T	899.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.93;QD=29.37;SOR=6.273	GT:AD:DP:GQ:PL	1/1:0,22:22:66:928,66,0
chr3	47125916	.	C	CT	169.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=5.544;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=0.382;QD=6.29;ReadPosRankSum=-0.496;SOR=0.12	GT:AD:DP:GQ:PL	0/1:13,14:35:99:198,0,240
chr3	47287603	.	A	AT	4326.77	PASS	AC=2;AF=1;AN=2;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.62;SOR=3.154	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4355,325,0
chr3	47305928	.	TTTTTA	T	3701.77	PASS	AC=2;AF=1;AN=2;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.46;QD=34.06;SOR=4.073	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3730,254,0
chr3	47437456	.	CGTG	C	315.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=32.25;SOR=2.833	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,8:8:24:1|1:47437449_C_A:344,24,0
chr3	47603926	.	A	AT	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.82;ReadPosRankSum=-0.608;SOR=2.833	GT:AD:DP:GQ:PL	0/1:4,3:7:62:62,0,79
chr3	47676902	.	C	CA	1874.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.03;ClippingRankSum=0;DP=135;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.07;QD=14.31;ReadPosRankSum=-1.872;SOR=0.348	GT:AD:DP:GQ:PL	0/1:69,62:131:99:1903,0,2160
chr3	47722034	.	C	CTT	223.77	PASS	AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.05;QD=27.03;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,5:10:28:221,28,0
chr3	47891744	.	CAA	C	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.52;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=-1.1;SOR=0.148	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,155
chr3	47894881	.	CGAG	C	223.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=1.2;QD=15.98;ReadPosRankSum=0;SOR=2.179	GT:AD:DP:GQ:PL	0/1:7,7:14:99:252,0,354
chr3	47917622	.	CTTTCTT	C	52.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=-0.431;QD=17.59;ReadPosRankSum=-0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:40:81,0,40
chr3	48206922	.	T	TA	161.9	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:15:190,15,0
chr3	48219320	.	AAC	A	2079.77	PASS	AC=2;AF=1;AN=2;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;QD=27.04;SOR=2.419	GT:AD:DP:GQ:PL	1/1:0,55:61:99:2077,179,0
chr3	48228059	.	CA	C	18.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.09;ReadPosRankSum=0.7;SOR=1.609	GT:AD:DP:GQ:PL	0/1:5,4:9:47:47,0,60
chr3	48282651	.	TGCGC	T	952.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0.896;QD=22.16;ReadPosRankSum=-0.936;SOR=0.697	GT:AD:DP:GQ:PL	0/1:18,25:43:99:981,0,856
chr3	48297992	.	TG	T	534.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=0.73;QD=19.81;ReadPosRankSum=-0.85;SOR=0.551	GT:AD:DP:GQ:PL	0/1:8,19:27:99:563,0,188
chr3	48327577	.	CTTT	C	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=1.04;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:71:73,0,71
chr3	48491995	.	AT	A	143.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DP=117;ExcessHet=3.0103;FS=6.593;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.015;QD=2.4;ReadPosRankSum=-0.671;SOR=0.25	GT:AD:DP:GQ:PL	0/1:44,16:95:99:172,0,851
chr3	48602523	.	G	GGGC	2812.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=28.66;SOR=1.214	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2841,195,0
chr3	48615597	.	C	CA	81.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.21;ReadPosRankSum=-1.546;SOR=0.148	GT:AD:DP:GQ:PL	0/1:29,8:40:99:110,0,486
chr3	48810772	.	CT	C	30.19	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=10.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:57,9,0
chr3	49069790	.	GCCAGC	G	1151.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=13.703;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=1.43;QD=18.88;ReadPosRankSum=-0.123;SOR=0.055	GT:AD:DP:GQ:PL	0/1:30,31:61:99:1180,0,1257
chr3	49113957	.	TA	T	42.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=14.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:69,9,0
chr3	49155699	.	T	TAAA	39.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=0;SOR=2.209	GT:AD:DP:GQ:PL	0/1:2,2:4:58:68,0,58
chr3	49278971	.	TACAC	T	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-1.383;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,98
chr3	49292991	.	CT	C	296.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.815;SOR=0.622	GT:AD:DP:GQ:PL	0/1:6,16:34:54:314,0,54
chr3	49315575	.	CT	C	181.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.739;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=1.73;SOR=0.776	GT:AD:DP:GQ:PL	0/1:5,11:18:73:210,0,73
chr3	49354975	.	GT	G	428.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.92;MQRankSum=1.13;QD=14.3;ReadPosRankSum=0.583;SOR=0.446	GT:AD:DP:GQ:PL	0/1:9,21:41:93:444,0,93
chr3	49395673	.	GGCCGCC	G	476.77	PASS	AC=2;AF=1;AN=2;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.75;QD=30.37;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,10:12:31:451,31,0
chr3	49463962	.	CT	C	27.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.78;ReadPosRankSum=0.12;SOR=1.329	GT:AD:DP:GQ:PL	0/1:6,4:10:56:56,0,97
chr3	49723726	.	GC	G,GCC	127.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=54.73;QD=18.25;SOR=2.584	GT:AD:DP:GQ:PL	1/2:0,4,3:7:78:156,78,89,93,0,105
chr3	49724048	.	TC	T	140.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=1.67;MLEAC=1;MLEAF=0.5;MQ=36.88;MQRankSum=-1.81;QD=4.4;ReadPosRankSum=-1.874;SOR=0.368	GT:AD:DP:GQ:PL	0/1:24,8:32:99:169,0,711
chr3	49725432	.	AG	A	1279.77	PASS	AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.76;QD=30.19;SOR=2.368	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1308,105,0
chr3	49765948	.	C	CATTT	20	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr3	49844964	.	G	GT	32.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.46;ReadPosRankSum=0.842;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,140
chr3	50098993	.	CT	C	775.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DP=207;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.457;QD=18.47;ReadPosRankSum=0.665;SOR=1.196	GT:AD:DP:GQ:PL	0/1:23,19:143:99:217,0,740
chr3	50114315	.	TA	T	16.86	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.41;ReadPosRankSum=0.036;SOR=0.495	GT:AD:DP:GQ:PL	0/1:4,3:7:45:45,0,74
chr3	50129374	.	T	TA	2244.77	PASS	AC=2;AF=1;AN=2;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=25.55;SOR=2.604	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2273,171,0
chr3	50131006	.	C	CA	24.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.54;ReadPosRankSum=1.01;SOR=0.495	GT:AD:DP:GQ:PL	0/1:4,3:7:53:53,0,57
chr3	50137713	.	C	CT	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.25;ReadPosRankSum=-0.458;SOR=2.066	GT:AD:DP:GQ:PL	0/1:9,6:15:99:107,0,152
chr3	50155887	.	TGA	T	116.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.454;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=8.681;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=2.07;QD=2.29;ReadPosRankSum=-1.372;SOR=0.112	GT:AD:DP:GQ:PL	0/1:41,10:51:99:145,0,1284
chr3	50251833	.	A	AG	1286.77	PASS	AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1315,111,0
chr3	50293476	.	CAAA	C	115.22	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.47;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.46;ReadPosRankSum=1.47;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,5:7:4:142,0,4
chr3	50306752	.	G	GC	820.77	PASS	AC=2;AF=1;AN=2;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=30.4;SOR=1.302	GT:AD:DP:GQ:PL	1/1:0,27:27:81:849,81,0
chr3	50599335	.	C	CT	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.13;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=0.861;QD=2.23;ReadPosRankSum=-0.09;SOR=0.33	GT:AD:DP:GQ:PL	0/1:15,6:24:75:75,0,280
chr3	50599717	.	CAGTT	C	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	51266880	.	T	TA	214.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.41;ReadPosRankSum=-0.054;SOR=1.236	GT:AD:DP:GQ:PL	0/1:16,13:41:99:243,0,301
chr3	51393706	.	C	CAG	2422.77	PASS	AC=2;AF=1;AN=2;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.74;QD=30;SOR=1.739	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2451,168,0
chr3	51399933	.	CCTG	C	2155.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.82;ClippingRankSum=0;DP=159;ExcessHet=3.0103;FS=15.536;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.52;QD=14.09;ReadPosRankSum=-0.993;SOR=1.855	GT:AD:DP:GQ:PL	0/1:93,60:153:99:2184,0,4492
chr3	51422741	.	CGGA	C	116.89	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.48;ReadPosRankSum=0.623;SOR=0.368	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,4:6:2:0|1:51422741_CGGA_C:143,0,2
chr3	51467041	.	CT	C	261.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=0.464;QD=18.7;ReadPosRankSum=-0.912;SOR=1.329	GT:AD:DP:GQ:PL	0/1:5,9:14:99:290,0,145
chr3	51505077	.	CACT	C	1208.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.64;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=5.007;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.21;QD=15.3;ReadPosRankSum=1.53;SOR=1.347	GT:AD:DP:GQ:PL	0/1:46,33:79:99:1237,0,2114
chr3	51505205	.	CT	C	37.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.39;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:64,9,0
chr3	51517625	.	TTG	T,TTGTGTG	819.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=33.03;SOR=6.666	GT:AD:DP:GQ:PL	1/2:0,9,10:27:99:848,474,542,377,0,346
chr3	51929360	.	GA	G	1543.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=26.17;SOR=2.872	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1572,177,0
chr3	51930729	.	G	GCACA	468.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=4.89;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0;QD=14.65;ReadPosRankSum=1.59;SOR=0.052	GT:AD:DP:GQ:PL	0/1:25,7:37:99:497,0,1152
chr3	52181249	.	AT	A	16.86	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.272;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.11;ReadPosRankSum=0.135;SOR=0.061	GT:AD:DP:GQ:PL	0/1:5,3:8:45:45,0,98
chr3	52259359	.	C	CA	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.77;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.53;ReadPosRankSum=0.618;SOR=0.859	GT:AD:DP:GQ:PL	0/1:5,4:11:60:60,0,95
chr3	52272945	.	C	CG	177.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.34;QD=22.22;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,8:8:24:206,24,0
chr3	52361093	.	GC	G	21.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.36;ReadPosRankSum=-0.524;SOR=0.061	GT:AD:DP:GQ:PL	0/1:3,2:5:50:50,0,83
chr3	52505758	.	G	GAT	992.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.97;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,22:22:69:1021,69,0
chr3	52559167	.	CGG	C	134.41	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.4;ReadPosRankSum=0.674;SOR=0.707	GT:AD:DP:GQ:PL	1/1:1,5:6:8:162,8,0
chr3	52582445	.	AT	A	27.11	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.78;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:12:55,0,12
chr3	52702799	.	T	TA	43.18	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=14.39;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:70,9,0
chr3	52725718	.	A	AT	193.18	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.56;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=0.546;QD=12.88;ReadPosRankSum=-0.26;SOR=3.014	GT:AD:DP:GQ:PL	0/1:4,11:25:48:221,0,48
chr3	52741581	.	AT	A	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.03;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.56;ReadPosRankSum=0.493;SOR=1.721	GT:AD:DP:GQ:PL	0/1:8,4:12:59:59,0,157
chr3	52864353	.	GA	G	18.82	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.76;ReadPosRankSum=0.524;SOR=0.368	GT:AD:DP:GQ:PL	0/1:3,2:5:47:47,0,80
chr3	52868668	.	G	GCACA,GCACACACA	559.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=27.21;SOR=5.136	GT:AD:DP:GQ:PL	1/2:0,3,9:12:99:588,384,369,132,0,99
chr3	52868716	.	GC	G	796.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.56;ReadPosRankSum=1.1;SOR=0.487	GT:AD:DP:GQ:PL	1/1:1,29:30:80:825,80,0
chr3	52870729	.	C	CA	3121.77	PASS	AC=2;AF=1;AN=2;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=31.92;SOR=2.066	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3150,256,0
chr3	52874716	.	GTT	G	358.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0;QD=36.34;ReadPosRankSum=-0.458;SOR=3.056	GT:AD:DP:GQ:PL	1/1:1,9:19:7:338,7,0
chr3	52877647	.	C	CA	1657.77	PASS	AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=3.026	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,36:36:99:1|1:52877647_C_CA:1686,114,0
chr3	52878746	.	C	CAG	1141.77	PASS	AC=2;AF=1;AN=2;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=29.54;SOR=5.136	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1170,78,0
chr3	52881634	.	T	TG	3204.83	PASS	AC=2;AF=1;AN=2;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=33.91;SOR=3.044	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3235,274,0
chr3	52883654	.	CT	C	254.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr3	52947311	.	GA	G	196.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr3	52950372	.	CT	C	119.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=29.94;SOR=4.407	GT:AD:DP:GQ:PL	1/1:0,4:8:22:106,22,0
chr3	52960013	.	GC	G	2099.77	PASS	AC=2;AF=1;AN=2;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=2.262	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2128,172,0
chr3	52960256	.	AG	A	961.77	PASS	AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=4.804	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,22:22:66:1|1:52960256_AG_A:990,66,0
chr3	52962561	.	TAAC	T	152.03	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	52964633	.	AC	A	240.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=3.912	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:1|1:52964633_AC_A:269,18,0
chr3	52964640	.	G	GA	240.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=3.912	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:1|1:52964633_AC_A:269,18,0
chr3	53126672	.	TTGCCCTGGACAAGGC	T	335.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=5.328;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=1.19;QD=15.26;ReadPosRankSum=-0.891;SOR=0.105	GT:AD:DP:GQ:PL	0/1:12,10:22:99:364,0,1855
chr3	53141152	.	GTTTT	G	206.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.366;QD=25.85;ReadPosRankSum=0.319;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,6:8:57:235,0,57
chr3	53154132	.	ATTAACT	A	157.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.67;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=2.09;SOR=0.765	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,5:13:99:0|1:53154132_ATTAACT_A:186,0,1139
chr3	53154139	.	GCACT	G	157.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=1.76;SOR=0.765	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,5:13:99:0|1:53154132_ATTAACT_A:186,0,1139
chr3	53213815	.	C	CGTGT	633.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.5;MQ=60.91;MQRankSum=2.22;QD=16.68;ReadPosRankSum=-0.831;SOR=1.204	GT:AD:DP:GQ:PL	0/1:21,17:45:99:662,0,886
chr3	53218691	.	C	CA	17.36	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.34;ReadPosRankSum=1.15;SOR=0.916	GT:AD:DP:GQ:PL	0/1:1,3:4:10:45,0,10
chr3	53220473	.	T	TC	528.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=31.1;SOR=1.371	GT:AD:DP:GQ:PL	1/1:0,17:17:54:557,54,0
chr3	53264841	.	T	TAG	286.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.56;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,7:7:21:1|1:53264841_T_TAG:315,21,0
chr3	53324819	.	ATGGCAC	A	1772.77	PASS	AC=2;AF=1;AN=2;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1801,121,0
chr3	53882673	.	G	GT	7218.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DP=269;ExcessHet=3.0103;FS=3.92;MLEAC=2;MLEAF=1;MQ=60.2;MQRankSum=0.17;QD=28.42;ReadPosRankSum=-0.839;SOR=0.887	GT:AD:DP:GQ:PL	1/1:1,253:254:99:7247,737,0
chr3	53883546	.	C	CA	266.78	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.65;QD=33.35;SOR=1.863	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,8:8:24:1|1:53883546_C_CA:295,24,0
chr3	53883558	.	T	TA	214.89	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.86;ReadPosRankSum=1.53;SOR=2.526	GT:AD:DP:GQ:PGT:PID:PL	1/1:1,7:8:2:1|1:53883546_C_CA:241,2,0
chr3	53910121	.	AG	A	1042.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.377;SOR=1.041	GT:AD:DP:GQ:PGT:PID:PL	0/1:60,49:109:99:0|1:53910118_A_G:1071,0,3469
chr3	53910919	.	G	GT	35.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=0;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:12:63,0,12
chr3	53911115	.	GA	G	134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.85;ReadPosRankSum=0.703;SOR=1.179	GT:AD:DP:GQ:PL	0/1:3,5:8:88:163,0,88
chr3	53915884	.	TCC	T	115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=1.71;SOR=0.105	GT:AD:DP:GQ:PL	0/1:5,4:9:99:144,0,185
chr3	54420721	.	GT	G	164.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.69;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.53;ReadPosRankSum=0.419;SOR=0.518	GT:AD:DP:GQ:PL	0/1:47,18:97:99:193,0,989
chr3	54676441	.	CA	C	191.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.97;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:220,24,0
chr3	54786864	.	G	GT	143.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.54;ReadPosRankSum=0.114;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,5:11:14:134,0,14
chr3	54905767	.	AG	A	297.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.83;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=-0.23;SOR=0.693	GT:AD:DP:GQ:PL	0/1:11,11:22:99:326,0,319
chr3	54905806	.	G	GTTT	169.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.86;ReadPosRankSum=-0.7;SOR=0.223	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,165
chr3	54913354	.	CT	C	821.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.652;QD=11.91;ReadPosRankSum=1.64;SOR=1.391	GT:AD:DP:GQ:PL	0/1:23,46:82:99:850,0,396
chr3	54925207	.	C	CGT	64.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.61;MQRankSum=0;QD=13;ReadPosRankSum=-0.253;SOR=1.981	GT:AD:DP:GQ:PL	0/1:1,4:5:13:93,0,13
chr3	54952348	.	CT	C	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=-0.416;SOR=0.756	GT:AD:DP:GQ:PL	0/1:15,16:31:99:330,0,492
chr3	54952359	.	C	CT	502.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.274;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=33.43;ReadPosRankSum=-0.425;SOR=3.321	GT:AD:DP:GQ:PL	0/1:5,6:35:59:126,0,59
chr3	54953022	.	CTT	C	676.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.83;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.35;ReadPosRankSum=-1.098;SOR=1.662	GT:AD:DP:GQ:PL	0/1:14,25:44:99:705,0,365
chr3	55003992	.	T	TA	695.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.97;ReadPosRankSum=-1.249;SOR=0.638	GT:AD:DP:GQ:PL	0/1:8,33:44:45:724,0,45
chr3	55018366	.	A	AT	21.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.3;ReadPosRankSum=-0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:17:50,0,17
chr3	55018619	.	T	TG	2329.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60.99;MQRankSum=3.18;QD=18.06;ReadPosRankSum=-0.283;SOR=0.607	GT:AD:DP:GQ:PL	0/1:56,73:129:99:2358,0,1412
chr3	55107996	.	TTTCA	T	688.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.958;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=6.326;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.89;QD=12.75;ReadPosRankSum=-2.853;SOR=0.193	GT:AD:DP:GQ:PL	0/1:34,20:54:99:717,0,1324
chr3	55108234	.	CACTGACTGAGATGTTCTCTT	C	3283.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DP=348;ExcessHet=3.0103;FS=7.73;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.42;QD=11.9;ReadPosRankSum=0.126;SOR=0.385	GT:AD:DP:GQ:PL	0/1:184,92:276:99:3312,0,7435
chr3	55108418	.	TATC	T	133.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.29;ReadPosRankSum=0;SOR=1.329	GT:AD:DP:GQ:PL	0/1:2,4:6:90:162,0,90
chr3	56037241	.	CA	C	2789.77	PASS	AC=2;AF=1;AN=2;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.13;SOR=3.223	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,63:63:99:1|1:56037241_CA_C:2818,190,0
chr3	56037249	.	A	AG	2882.77	PASS	AC=2;AF=1;AN=2;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=3.511	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,65:65:99:1|1:56037241_CA_C:2911,196,0
chr3	56115221	.	T	TA	34.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.95;ReadPosRankSum=0.524;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,3:5:33:63,0,33
chr3	56591278	.	T	TGGGGTAAGCA	2633.77	PASS	AC=2;AF=1;AN=2;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.59;QD=32.91;SOR=0.831	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2662,198,0
chr3	56599258	.	G	GTATT	1545.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.62;SOR=2.964	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1574,105,0
chr3	56605404	.	TA	T	182.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.31;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:211,27,0
chr3	56606599	.	G	GCCTTCATTTCTTTTTTACATTTA	555.77	PASS	AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=29.57;SOR=2.67	GT:AD:DP:GQ:PL	1/1:0,12:12:39:584,39,0
chr3	56779704	.	AT	A	29.1	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.28;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:12:57,0,12
chr3	56807854	.	TA	T	113.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.14;QD=2.84;ReadPosRankSum=-0.227;SOR=0.502	GT:AD:DP:GQ:PL	0/1:28,12:51:99:142,0,675
chr3	56808956	.	A	AC	857.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=32.88;SOR=2.494	GT:AD:DP:GQ:PL	1/1:0,24:24:72:886,72,0
chr3	57130643	.	TA	T	213.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=0.502;QD=16.44;ReadPosRankSum=-0.494;SOR=1.179	GT:AD:DP:GQ:PL	0/1:5,8:13:99:242,0,131
chr3	57137232	.	GA	G	572.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.505;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.13;QD=8.68;ReadPosRankSum=-0.231;SOR=0.624	GT:AD:DP:GQ:PL	0/1:36,30:66:99:601,0,833
chr3	57335705	.	TACACAC	T,TAC	473.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.54;QD=27.74;SOR=2.67	GT:AD:DP:GQ:PL	1/2:0,6,6:12:99:502,167,155,143,0,107
chr3	57391284	.	GTTCA	G	1295.77	PASS	AC=2;AF=1;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.01;QD=25.79;SOR=5.421	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1324,90,0
chr3	57394473	.	C	CG	130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.68;ReadPosRankSum=-0.18;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,4:7:99:0|1:57394473_C_CG:159,0,412
chr3	57394474	.	TGGAATGAC	T	130.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.68;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,4:7:99:0|1:57394473_C_CG:159,0,412
chr3	57407629	.	CTTT	C	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=0.967;SOR=2.303	GT:AD:DP:GQ:PL	0/1:2,2:4:48:67,0,48
chr3	57418901	.	C	CA	21.92	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.48;ReadPosRankSum=-0.319;SOR=2.788	GT:AD:DP:GQ:PL	1/1:1,3:4:1:47,1,0
chr3	57422876	.	TA	T	29.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.95;ReadPosRankSum=1.04;SOR=0.223	GT:AD:DP:GQ:PL	0/1:2,3:5:40:58,0,40
chr3	57431275	.	A	AT	26.57	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.28;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr3	57431721	.	AAAATAAAT	A	540.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.552;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=61.41;MQRankSum=-1.635;QD=11.51;ReadPosRankSum=-1.374;SOR=1.358	GT:AD:DP:GQ:PL	0/1:31,16:47:99:569,0,1291
chr3	57431740	.	ATAAATAAATAAT	A	1321.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.06;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=2.922;MLEAC=1;MLEAF=0.5;MQ=61.89;MQRankSum=3.64;QD=17.86;ReadPosRankSum=-0.675;SOR=1.252	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1350,0,1168
chr3	57456093	.	C	CA	148.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.08;ReadPosRankSum=-1.339;SOR=0.61	GT:AD:DP:GQ:PL	0/1:11,10:21:99:177,0,180
chr3	57469348	.	A	AT	1134.77	PASS	AC=2;AF=1;AN=2;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=25.31;SOR=4.479	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1163,87,0
chr3	57488279	.	T	TTTC	1435.77	PASS	AC=2;AF=1;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.34;QD=29.07;SOR=7.112	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1464,102,0
chr3	57493927	.	CAAA	C	56.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=-0.319;SOR=1.609	GT:AD:DP:GQ:PL	0/1:1,3:4:1:82,0,1
chr3	57545169	.	G	GC	2665.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=4.4;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.72;QD=17.42;ReadPosRankSum=-0.787;SOR=0.682	GT:AD:DP:GQ:PL	0/1:75,78:153:99:2694,0,2559
chr3	57582718	.	GAAA	G	649.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.288;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.5;MQ=60.5;MQRankSum=1.64;QD=15.11;ReadPosRankSum=-0.733;SOR=0.292	GT:AD:DP:GQ:PL	0/1:24,19:43:99:678,0,1048
chr3	57615975	.	TTATC	T	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,117
chr3	57620161	.	CA	C	147.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.829;QD=14.78;ReadPosRankSum=0.646;SOR=1.329	GT:AD:DP:GQ:PL	1/1:2,8:12:2:147,2,0
chr3	57850505	.	CT	C	104.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.97;QD=2.1;ReadPosRankSum=0.167;SOR=0.571	GT:AD:DP:GQ:PL	0/1:37,13:57:99:133,0,877
chr3	58080389	.	A	AGTACACATT	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.24;MQRankSum=-1.383;QD=11.69;ReadPosRankSum=-1.383;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	0/1:2,2:4:75:0|1:58080389_A_AGTACACATT:75,0,145
chr3	58080392	.	A	ATCGGACAGCCGGTCTATAATC	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=53.88;MQRankSum=-1.645;QD=9.35;ReadPosRankSum=-0.524;SOR=2.245	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,2:5:75:0|1:58080389_A_AGTACACATT:75,0,145
chr3	58080395	.	G	GTAATAAAATTACTCGATAAGCAACAAATCAAGCAAATCAGC	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=53.88;MQRankSum=-1.645;QD=9.35;ReadPosRankSum=-1.282;SOR=2.245	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,2:5:75:0|1:58080389_A_AGTACACATT:75,0,145
chr3	58089594	.	GT	G	757.77	PASS	AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=3.816	GT:AD:DP:GQ:PL	1/1:0,21:21:63:786,63,0
chr3	58109430	.	TAA	T	195.03	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.58;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.5;ReadPosRankSum=1.21;SOR=1.23	GT:AD:DP:GQ:PL	0/1:3,7:21:99:211,0,135
chr3	58351660	.	C	CTT	904.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.99;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=8.269;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.529;QD=22.62;ReadPosRankSum=-0.79;SOR=1.141	GT:AD:DP:GQ:PL	0/1:15,25:76:99:933,0,460
chr3	58368219	.	C	CT	556.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.05;ReadPosRankSum=0.097;SOR=1.024	GT:AD:DP:GQ:PL	0/1:43,36:106:99:585,0,782
chr3	58395490	.	G	GT	126.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.972;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.5;MQ=61.43;MQRankSum=0.998;QD=10.56;ReadPosRankSum=-1.524;SOR=0.105	GT:AD:DP:GQ:PL	0/1:5,7:12:91:155,0,91
chr3	58395501	.	G	GA	44.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.48;ReadPosRankSum=-0.303;SOR=0.02	GT:AD:DP:GQ:PL	0/1:6,4:10:73:73,0,116
chr3	58409300	.	G	GTT	928.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.331;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-1.423;SOR=0.894	GT:AD:DP:GQ:PL	0/1:48,28:76:99:957,0,1961
chr3	58416770	.	T	TTTA	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.524;QD=18.35;ReadPosRankSum=0.524;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:84:120,0,84
chr3	58419645	.	G	GACCCGCCC	93.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=31.26;ReadPosRankSum=0.967;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:81:122,0,81
chr3	58494955	.	T	TA	27.57	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.78;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr3	58631184	.	G	GAAATA,GAAATAAAATA	846.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.57;QD=32.36;SOR=4.174	GT:AD:DP:GQ:PL	1/2:0,10,6:16:99:875,259,208,429,0,391
chr3	59997301	.	CTGAGAG	C	331.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.66;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr3	61734400	.	GT	G	60.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=1.07;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:28:89,0,28
chr3	62267213	.	C	CTTTTTTTTTTTTTTTTTTTTTTTT	845.77	PASS	AC=2;AF=1;AN=2;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.42;QD=25.7;SOR=4.255	GT:AD:DP:GQ:PL	1/1:0,6:26:32:448,32,0
chr3	62355666	.	G	GT	506.77	PASS	AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.13;SOR=3.16	GT:AD:DP:GQ:PL	1/1:0,21:21:61:535,61,0
chr3	62431256	.	G	GA	27.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=13.78;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr3	62431387	.	G	GA	146.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.34;ReadPosRankSum=0.832;SOR=1.022	GT:AD:DP:GQ:PL	0/1:11,9:26:99:175,0,182
chr3	62455195	.	CT	C	55.03	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=1.28;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,4:5:12:83,0,12
chr3	62459828	.	AT	A	593.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DP=143;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.61;QD=6.25;ReadPosRankSum=0.477;SOR=0.509	GT:AD:DP:GQ:PL	0/1:58,37:127:99:622,0,1115
chr3	62477211	.	AAC	A	60.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.16;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.05;MQRankSum=0;QD=6.75;ReadPosRankSum=-0.475;SOR=0.527	GT:AD:DP:GQ:PL	0/1:5,4:9:89:89,0,151
chr3	62518392	.	TTGTG	T,TTG	304.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.443;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=23.44;ReadPosRankSum=1.21;SOR=2.303	GT:AD:DP:GQ:PL	1/2:1,7,5:13:99:333,112,141,137,0,136
chr3	63264535	.	GC	G	481.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=1.09;QD=20.07;ReadPosRankSum=0.889;SOR=1.519	GT:AD:DP:GQ:PL	0/1:8,16:24:99:510,0,212
chr3	63849473	.	CGCG	C	49.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.674;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,79
chr3	63968299	.	AGTGT	A	210.84	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.12;ReadPosRankSum=-0.792;SOR=3.897	GT:AD:DP:GQ:PL	0/1:1,6:7:18:239,0,18
chr3	63982293	.	TAA	T	75.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.451;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.862;SOR=0.941	GT:AD:DP:GQ:PL	0/1:3,5:13:99:103,0,116
chr3	64009432	.	AT	A	657.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=8.209;MLEAC=1;MLEAF=0.5;MQ=60.56;MQRankSum=2.2;QD=9.01;ReadPosRankSum=0.21;SOR=1.819	GT:AD:DP:GQ:PL	0/1:39,34:73:99:686,0,928
chr3	64526651	.	CCAATGTG	C	376.78	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.64;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr3	64636543	.	C	CT	153.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.27;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=0.962;QD=7.32;ReadPosRankSum=-0.818;SOR=0.509	GT:AD:DP:GQ:PL	0/1:9,12:21:99:182,0,103
chr3	64640206	.	TA	T	2776.77	PASS	AC=2;AF=1;AN=2;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=31.76;SOR=1.061	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,74:74:99:1|1:64640206_TA_T:2805,222,0
chr3	65361383	.	AAG	A	115.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=3.91;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.93;QD=3.73;ReadPosRankSum=-0.26;SOR=0.082	GT:AD:DP:GQ:PL	0/1:24,7:31:99:144,0,766
chr3	65423079	.	CTT	C	69.18	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.06;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:96,9,0
chr3	65425560	.	T	TCTG	1515.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=3.082;MLEAC=1;MLEAF=0.5;MQ=61.03;MQRankSum=2.91;QD=18.95;ReadPosRankSum=-1.642;SOR=1.106	GT:AD:DP:GQ:PL	0/1:38,42:83:99:1544,0,1402
chr3	65439050	.	G	GA	158.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.74;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.52;ReadPosRankSum=0.883;SOR=1.352	GT:AD:DP:GQ:PL	0/1:45,18:80:99:187,0,889
chr3	65456198	.	G	GA	320.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.855;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=1.7;SOR=0.239	GT:AD:DP:GQ:PL	0/1:25,20:53:99:349,0,743
chr3	65464522	.	G	GT	731.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=1.33;QD=11.09;ReadPosRankSum=1.13;SOR=0.38	GT:AD:DP:GQ:PL	0/1:31,35:68:99:760,0,549
chr3	65583600	.	TGG	T	469.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=9.542;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=0.53;QD=29.37;ReadPosRankSum=-1.267;SOR=5.67	GT:AD:DP:GQ:PL	0/1:2,14:18:44:498,0,44
chr3	65607592	.	T	TCA	418.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=5.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.693;SOR=0.19	GT:AD:DP:GQ:PL	0/1:22,18:43:99:447,0,652
chr3	66312333	.	TAA	T	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.83;ReadPosRankSum=-0.366;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,2:7:48:48,0,107
chr3	66396898	.	G	GAAGAGTAGA	465.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=4.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.41;ReadPosRankSum=-2.638;SOR=1.981	GT:AD:DP:GQ:PL	0/1:11,13:24:99:494,0,577
chr3	66419793	.	CCAGGTGTA	C	217.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.411;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=0.636;SOR=0.693	GT:AD:DP:GQ:PL	0/1:16,7:23:99:246,0,651
chr3	66434372	.	T	TCACACA	403.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.244;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.56;ReadPosRankSum=-0.508;SOR=1.292	GT:AD:DP:GQ:PL	0/1:13,10:28:99:432,0,839
chr3	66458047	.	G	GCA	96.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=-1.242;SOR=0.412	GT:AD:DP:GQ:PGT:PID:PL	0/1:6,4:10:99:0|1:66458046_T_C:125,0,204
chr3	67459509	.	AATGGGTTTTAGTTCTTTAC	A	1635.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.27;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.04;ReadPosRankSum=0.9;SOR=1.022	GT:AD:DP:GQ:PL	0/1:58,44:102:99:1664,0,4082
chr3	68934477	.	CA	C	120.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.01;ReadPosRankSum=-2.554;SOR=1.135	GT:AD:DP:GQ:PL	0/1:46,14:71:99:149,0,1080
chr3	69054212	.	CA	C	246.8	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.74;MQRankSum=0.739;QD=12.34;ReadPosRankSum=-0.312;SOR=2.833	GT:AD:DP:GQ:PL	0/1:5,15:28:75:275,0,75
chr3	69076830	.	TA	T	38.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.54;ReadPosRankSum=0.328;SOR=0.061	GT:AD:DP:GQ:PL	0/1:3,4:7:35:67,0,35
chr3	69171664	.	A	ATT	19.81	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.48;ReadPosRankSum=-0.414;SOR=1.27	GT:AD:DP:GQ:PL	0/1:5,3:8:48:48,0,137
chr3	69242770	.	CA	C	1899.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.25;QD=9.31;ReadPosRankSum=0.736;SOR=0.757	GT:AD:DP:GQ:PL	0/1:96,108:220:99:1928,0,2003
chr3	69245689	.	A	AAAAAC	196.9	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr3	69249884	.	GAAGT	G	4132.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0;DP=242;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=2.79;QD=17.89;ReadPosRankSum=0.625;SOR=0.922	GT:AD:DP:GQ:PL	0/1:120,111:231:99:4161,0,6732
chr3	69265304	.	C	CA	475.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.98;QD=9.71;ReadPosRankSum=-1.041;SOR=0.319	GT:AD:DP:GQ:PL	0/1:25,24:49:99:504,0,479
chr3	69341966	.	C	CTT	111.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=0;SOR=2.584	GT:AD:DP:GQ:PL	0/1:4,4:10:57:140,0,57
chr3	69351460	.	AAG	A	396.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.6;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60.74;MQRankSum=1.6;QD=14.17;ReadPosRankSum=-0.83;SOR=2.12	GT:AD:DP:GQ:PL	0/1:15,13:28:99:425,0,576
chr3	69359730	.	CACAGAGAGAGAGAG	C	127.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.15;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.5;MQ=61.62;MQRankSum=1.81;QD=6.39;ReadPosRankSum=1.57;SOR=2.303	GT:AD:DP:GQ:PL	0/1:13,7:22:99:156,0,541
chr3	69359732	.	CAG	C	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.676;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.62;MQRankSum=-1.067;QD=5.57;ReadPosRankSum=1.92;SOR=1.179	GT:AD:DP:GQ:PL	0/1:13,4:18:99:123,0,598
chr3	69988437	.	G	GT	55.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.918;ClippingRankSum=0;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.23;ReadPosRankSum=1.52;SOR=0.245	GT:AD:DP:GQ:PL	0/1:18,7:27:84:84,0,348
chr3	71008341	.	G	GT	156.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.801;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.21;QD=3.07;ReadPosRankSum=1.82;SOR=0.953	GT:AD:DP:GQ:PL	0/1:36,15:62:99:185,0,729
chr3	72495593	.	T	TA	289.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=2.56;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=0.56;QD=13.17;ReadPosRankSum=-0.362;SOR=0.242	GT:AD:DP:GQ:PL	0/1:6,16:32:72:318,0,72
chr3	72890503	.	CAA	C	68.41	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=17.1;ReadPosRankSum=-1.15;SOR=0.446	GT:AD:DP:GQ:PL	1/1:1,3:4:7:95,7,0
chr3	73024520	.	G	GA	75.96	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.319;SOR=1.863	GT:AD:DP:GQ:PL	0/1:2,4:8:21:98,0,21
chr3	73096591	.	A	ATAAT	467.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.51;QD=30.89;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,12:12:36:496,36,0
chr3	73112919	.	T	TA	7217.77	PASS	AC=2;AF=1;AN=2;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=33.64;SOR=0.811	GT:AD:DP:GQ:PL	1/1:0,195:195:99:7246,589,0
chr3	73437225	.	T	TA	268.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.98;MQRankSum=1.84;QD=9.27;ReadPosRankSum=-0.333;SOR=0.693	GT:AD:DP:GQ:PL	0/1:15,14:30:99:297,0,263
chr3	73440108	.	G	GA	1040.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.396;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.919;QD=10.41;ReadPosRankSum=-0.255;SOR=0.6	GT:AD:DP:GQ:PL	0/1:47,53:105:99:1069,0,821
chr3	73651621	.	TA	T	1301.56	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.872;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=4.723;MLEAC=2;MLEAF=1;MQ=60.26;MQRankSum=-1.652;QD=17.13;ReadPosRankSum=1.27;SOR=1.981	GT:AD:DP:GQ:PL	1/1:9,67:76:7:1329,7,0
chr3	74334888	.	ACAAATGCTGAG	A	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	75679778	.	GC	G	67.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.88;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23;MQRankSum=0;QD=6.16;ReadPosRankSum=1.3;SOR=0.18	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,3:11:96:0|1:75679778_GC_G:96,0,378
chr3	75680081	.	TGTG	T	1131.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DP=205;ExcessHet=3.0103;FS=18.028;MLEAC=1;MLEAF=0.5;MQ=29.86;MQRankSum=-5.361;QD=5.8;ReadPosRankSum=-1.253;SOR=3.716	GT:AD:DP:GQ:PGT:PID:PL	0/1:155,40:195:99:0|1:75680081_TGTG_T:1160,0,6279
chr3	75680230	.	T	TA	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:75680217_C_A:90,6,0
chr3	75680232	.	TAGC	T	63.56	PASS	AC=2;AF=1;AN=2;DP=1;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24;QD=35.07;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,1:1:6:1|1:75680217_C_A:90,6,0
chr3	75986992	.	TTATA	T	20	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.31;QD=20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr3	77607070	.	A	AC	3402.77	PASS	AC=2;AF=1;AN=2;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=29.85;SOR=1.872	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3431,292,0
chr3	77613740	.	GTA	G	81.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=2.15;QD=3.14;ReadPosRankSum=0.358;SOR=0.954	GT:AD:DP:GQ:PL	0/1:21,5:26:99:110,0,711
chr3	77645946	.	CT	C	495.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=4.381;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0.571;QD=14.16;ReadPosRankSum=-0.64;SOR=2.833	GT:AD:DP:GQ:PL	0/1:7,28:35:38:524,0,38
chr3	77684426	.	AT	A	36.18	PASS	AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=12.06;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:63,9,0
chr3	78663958	.	GA	G	217.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=7.78;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.17;QD=3.16;ReadPosRankSum=-0.97;SOR=0.144	GT:AD:DP:GQ:PL	0/1:47,22:83:99:246,0,1096
chr3	78666656	.	T	TA	253.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.31;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.71;MQRankSum=0;QD=28.2;ReadPosRankSum=-0.613;SOR=2.833	GT:AD:DP:GQ:PL	1/1:1,8:17:9:232,9,0
chr3	78706553	.	AT	A	42.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.29;ReadPosRankSum=-0.288;SOR=1.508	GT:AD:DP:GQ:PL	0/1:9,4:13:71:71,0,222
chr3	78708810	.	A	AATAT	1231.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=0;QD=14.16;ReadPosRankSum=1.38;SOR=0.799	GT:AD:DP:GQ:PL	0/1:57,30:103:99:1260,0,2958
chr3	78709068	.	CTTTT	C	412.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=12.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.45;ReadPosRankSum=0.651;SOR=5.546	GT:AD:DP:GQ:PL	0/1:1,9:16:77:399,0,77
chr3	78711394	.	GA	G	47.9	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.18;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.84;ReadPosRankSum=1.98;SOR=1.609	GT:AD:DP:GQ:PL	0/1:2,5:7:15:76,0,15
chr3	81584268	.	CT	C	388.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-0.102;SOR=1.244	GT:AD:DP:GQ:PL	0/1:14,21:48:99:417,0,252
chr3	81810702	.	A	AG	500.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.26;QD=31.06;SOR=0.976	GT:AD:DP:GQ:PL	1/1:0,14:14:45:529,45,0
chr3	85434950	.	C	CTT	995.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.5;MQ=60.73;MQRankSum=0.337;QD=27.39;ReadPosRankSum=0.327;SOR=2.049	GT:AD:DP:GQ:PL	1/1:3,24:50:19:919,19,0
chr3	87275442	.	G	GA	596.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.1;ReadPosRankSum=0.086;SOR=1.528	GT:AD:DP:GQ:PL	1/1:2,25:29:38:625,38,0
chr3	88199185	.	T	TC	4385.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.621;ClippingRankSum=0;DP=165;ExcessHet=3.0103;FS=1.917;MLEAC=2;MLEAF=1;MQ=60.26;MQRankSum=0.35;QD=29.24;ReadPosRankSum=-0.415;SOR=1.248	GT:AD:DP:GQ:PL	1/1:4,146:154:99:4414,350,0
chr3	89448886	.	T	TA	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:89448886_T_TA:90,6,0
chr3	89448888	.	T	TTG	63.56	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=2.303	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,2:2:6:1|1:89448886_T_TA:90,6,0
chr3	89521602	.	T	TC	5827.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DP=355;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=3.25;QD=16.84;ReadPosRankSum=0.332;SOR=0.787	GT:AD:DP:GQ:PL	0/1:167,179:346:99:5856,0,4419
chr3	89521820	.	TTG	T	907.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.05;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.91;ReadPosRankSum=-0.578;SOR=0.262	GT:AD:DP:GQ:PGT:PID:PL	0/1:24,24:48:99:0|1:89521820_TTG_T:936,0,911
chr3	89521824	.	CT	C	913.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.86;SOR=0.307	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,24:46:99:0|1:89521820_TTG_T:942,0,852
chr3	89521828	.	AC	A	832.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.69;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=1.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.83;ReadPosRankSum=-1.778;SOR=0.307	GT:AD:DP:GQ:PGT:PID:PL	0/1:20,22:42:99:0|1:89521820_TTG_T:861,0,816
chr3	89521831	.	TGAAAG	T	874.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.422;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.34;ReadPosRankSum=-1.884;SOR=0.28	GT:AD:DP:GQ:PGT:PID:PL	0/1:20,21:41:99:0|1:89521820_TTG_T:903,0,813
chr3	89521838	.	TTTG	T	799.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.51;ReadPosRankSum=-2.229;SOR=0.532	GT:AD:DP:GQ:PGT:PID:PL	0/1:18,21:39:99:0|1:89521820_TTG_T:828,0,693
chr3	93754080	.	CAAA	C	23.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.38;ReadPosRankSum=1.83;SOR=0.446	GT:AD:DP:GQ:PL	0/1:8,2:10:52:52,0,253
chr3	93754286	.	GT	G	73.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.14;QD=2.17;ReadPosRankSum=-1.97;SOR=0.713	GT:AD:DP:GQ:PL	0/1:24,10:44:99:102,0,552
chr3	97367230	.	C	CA	2340.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.152;ClippingRankSum=0;DP=155;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.08;QD=15.61;ReadPosRankSum=-0.539;SOR=0.551	GT:AD:DP:GQ:PL	0/1:80,70:150:99:2369,0,2773
chr3	97467361	.	ATCTC	A	2886.77	PASS	AC=2;AF=1;AN=2;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.81;QD=24.21;SOR=4.003	GT:AD:DP:GQ:PL	1/1:0,66:73:99:2884,207,0
chr3	97619250	.	C	CAACTA	2282.77	PASS	AC=2;AF=1;AN=2;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=29.69;SOR=3.126	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2311,159,0
chr3	97678150	.	G	GT	43.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.48;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.86;ReadPosRankSum=0.256;SOR=1.402	GT:AD:DP:GQ:PL	0/1:3,6:9:31:72,0,31
chr3	97727586	.	CT	C	37.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.55;ReadPosRankSum=0;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,106
chr3	97727642	.	CAAA	C	168.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.16;ReadPosRankSum=1.53;SOR=1.402	GT:AD:DP:GQ:PL	0/1:1,5:8:18:184,0,18
chr3	97731434	.	C	CA	251.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.18;QD=8.68;ReadPosRankSum=2.31;SOR=0.481	GT:AD:DP:GQ:PL	0/1:16,13:29:99:280,0,328
chr3	97983487	.	TTGTAACCAC	T	9143.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=3.86;ClippingRankSum=0;DP=612;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=57.93;MQRankSum=-8.51;QD=16.18;ReadPosRankSum=1.71;SOR=0.776	GT:AD:DP:GQ:PL	0/1:320,245:565:99:9172,0,12563
chr3	98073591	.	TA	T	845.77	PASS	AC=2;AF=1;AN=2;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.55;QD=25.63;SOR=4.112	GT:AD:DP:GQ:PL	1/1:0,33:33:99:874,99,0
chr3	98110406	.	G	GA	1668.77	PASS	AC=2;AF=1;AN=2;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=1.292	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1697,183,0
chr3	98492491	.	C	CAT	286.8	PASS	AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr3	98518160	.	T	TA	2340.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;MQRankSum=0.604;QD=22.51;ReadPosRankSum=-0.568;SOR=0.804	GT:AD:DP:GQ:PL	1/1:9,95:116:99:2369,134,0
chr3	98531001	.	ATAAC	A	78.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.78;MQRankSum=0.524;QD=15.75;ReadPosRankSum=-0.524;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:99:107,0,110
chr3	98544123	.	CAA	C	169.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.978;SOR=0.368	GT:AD:DP:GQ:PL	0/1:6,8:16:99:198,0,196
chr3	100053684	.	C	CG	137.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.22;ReadPosRankSum=-0.619;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,6:8:40:166,0,40
chr3	100092526	.	A	AG	690.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.57;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=5.348;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.13;QD=16.85;ReadPosRankSum=0.118;SOR=1.708	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,19:41:99:0|1:100092526_A_AG:719,0,1873
chr3	100092528	.	T	TGCA	690.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.87;ClippingRankSum=0;DP=41;ExcessHet=3.0103;FS=3.33;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.27;ReadPosRankSum=-0.027;SOR=1.609	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,18:40:99:0|1:100092526_A_AG:719,0,1873
chr3	100100774	.	C	CT	33.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.44;ReadPosRankSum=-1.383;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,63
chr3	100170600	.	A	ATCCTAGAAGGCATTCTCATGAGGACCAGGAATTCCGATGCCGATCGTCTGACCGTCT	4184.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-3.449;ClippingRankSum=0;DP=197;ExcessHet=3.0103;FS=5.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=29.68;ReadPosRankSum=-8.61;SOR=0.387	GT:AD:DP:GQ:PL	0/1:69,72:141:99:4213,0,9646
chr3	100238231	.	ATG	A	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.69;ReadPosRankSum=0.967;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:58:59,0,58
chr3	100464023	.	GTT	G	114.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.4;ReadPosRankSum=-0.652;SOR=3.236	GT:AD:DP:GQ:PL	0/1:3,4:7:99:143,0,104
chr3	100515197	.	AT	A	221.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.03;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=-0.721;SOR=1.609	GT:AD:DP:GQ:PL	0/1:12,14:28:99:250,0,256
chr3	100529408	.	AT	A	279.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-1.059;SOR=0.199	GT:AD:DP:GQ:PL	0/1:15,15:30:99:308,0,326
chr3	100535273	.	TA	T	57.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=-1.006;SOR=0.086	GT:AD:DP:GQ:PL	0/1:4,3:7:86:86,0,112
chr3	100539299	.	A	ATTATAATAGTATGTCTCCTT	219.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.611;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.66;MQRankSum=0;QD=19.98;ReadPosRankSum=-0.884;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,6:11:99:248,0,734
chr3	100542463	.	C	CA,CAAAA	390.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=24.42;SOR=3.258	GT:AD:DP:GQ:PL	1/2:0,13,3:16:87:419,126,87,325,0,468
chr3	100560745	.	GA	G	84.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=7.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.53;ReadPosRankSum=1.98;SOR=0.045	GT:AD:DP:GQ:PL	0/1:16,8:28:99:113,0,334
chr3	100583651	.	GA	G	376.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=1.66;SOR=0.922	GT:AD:DP:GQ:PL	0/1:22,23:47:99:405,0,465
chr3	100594326	.	CGGCATA	C	4455.77	PASS	AC=2;AF=1;AN=2;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=28.4;SOR=0.979	GT:AD:DP:GQ:PL	1/1:0,101:101:99:4484,305,0
chr3	100633018	.	G	GA	16.05	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.35;ReadPosRankSum=0;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:15:44,0,15
chr3	101039022	.	AAGT	A	52.79	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.6;ReadPosRankSum=0.967;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:24:81,0,24
chr3	101066565	.	C	CA	32.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=58.28;MQRankSum=0.589;QD=3.64;ReadPosRankSum=0.464;SOR=0.105	GT:AD:DP:GQ:PL	0/1:5,4:9:61:61,0,67
chr3	101067010	.	T	TAGA	256.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.68;ReadPosRankSum=-0.984;SOR=0.569	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,7:10:99:0|1:101066992_A_T:285,0,105
chr3	101232056	.	GGAAA	G	286.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.93;MQRankSum=1.81;QD=12.47;ReadPosRankSum=2.9;SOR=0.793	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,12:23:99:0|1:101232056_GGAAA_G:315,0,265
chr3	101399910	.	GA	G	149.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.12;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.99;ReadPosRankSum=-0.644;SOR=0.634	GT:AD:DP:GQ:PL	0/1:18,12:35:99:178,0,403
chr3	101405820	.	C	CT	28.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.75;MQRankSum=0.385;QD=4.8;ReadPosRankSum=1.96;SOR=0.991	GT:AD:DP:GQ:PL	0/1:3,3:6:39:57,0,39
chr3	101520971	.	T	TA	25.78	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.22;ReadPosRankSum=-0.157;SOR=0.368	GT:AD:DP:GQ:PL	0/1:5,3:8:54:54,0,92
chr3	101576029	.	T	TACTTTTAGAAAGCTTTAATAACC	4050.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=224;ExcessHet=3.0103;FS=4.021;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.148;QD=19.66;ReadPosRankSum=-6.078;SOR=0.986	GT:AD:DP:GQ:PL	0/1:118,88:206:99:4079,0,7215
chr3	105238890	.	CT	C	5134.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0;DP=249;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.01;QD=24.11;ReadPosRankSum=0.727;SOR=0.589	GT:AD:DP:GQ:PL	0/1:75,138:225:99:5163,0,1458
chr3	105270850	.	AT	A	30.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.13;ReadPosRankSum=0;SOR=3.258	GT:AD:DP:GQ:PL	0/1:2,4:6:33:59,0,33
chr3	105412286	.	C	CTT	1780.77	PASS	AC=2;AF=1;AN=2;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.53;QD=24.27;SOR=4.021	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1809,126,0
chr3	105421320	.	G	GAAAA	169.98	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.24;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.89;ReadPosRankSum=-1.737;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,6:19:99:198,0,219
chr3	105495098	.	CCAAT	C	275.8	PASS	AC=2;AF=1;AN=2;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=26.96;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:304,21,0
chr3	107463456	.	TG	T	3085.77	PASS	AC=2;AF=1;AN=2;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=26.43;SOR=3.373	GT:AD:DP:GQ:PL	1/1:0,80:80:99:3114,241,0
chr3	107524112	.	G	GT	734.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.15;QD=13.12;ReadPosRankSum=-0.948;SOR=0.501	GT:AD:DP:GQ:PL	0/1:31,25:56:99:763,0,993
chr3	107647001	.	CA	C	1880.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=2.974;MLEAC=2;MLEAF=1;MQ=60.35;MQRankSum=0.317;QD=22.66;ReadPosRankSum=-0.16;SOR=1.911	GT:AD:DP:GQ:PL	1/1:2,81:85:99:1909,199,0
chr3	107910327	.	CT	C	135.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.21;QD=2.72;ReadPosRankSum=-0.914;SOR=0.765	GT:AD:DP:GQ:PL	0/1:36,14:62:99:164,0,825
chr3	108046983	.	G	GA	31.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0;DP=12;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.65;ReadPosRankSum=-2.46;SOR=0.027	GT:AD:DP:GQ:PL	0/1:7,5:12:60:60,0,100
chr3	108095650	.	GAGA	G	46.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-0.524;SOR=1.609	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,148
chr3	108102586	.	T	TA,TAA	2064.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DP=153;ExcessHet=3.0103;FS=4.489;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=21.07;ReadPosRankSum=-1.947;SOR=0.209	GT:AD:DP:GQ:PL	1/2:12,47,39:119:99:2093,758,743,635,0,813
chr3	108117356	.	T	TG	421.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.61;SOR=4.804	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,10:10:30:1|1:108117356_T_TG:450,30,0
chr3	108135606	.	TAA	T	5096.77	PASS	AC=2;AF=1;AN=2;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=28.02;SOR=3.651	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,112:112:99:1|1:108135606_TAA_T:5125,351,0
chr3	108156633	.	A	AAAAG	554.77	PASS	AC=2;AF=1;AN=2;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.36;QD=33.37;SOR=5.421	GT:AD:DP:GQ:PL	1/1:0,14:14:42:583,42,0
chr3	108179219	.	C	CA	348.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=6.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.58;ReadPosRankSum=-0.798;SOR=0.223	GT:AD:DP:GQ:PL	0/1:26,20:58:99:377,0,489
chr3	108211869	.	A	AAAGG	735.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,16:16:51:764,51,0
chr3	108212151	.	C	CA	309.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.65;ReadPosRankSum=0.633;SOR=3.5	GT:AD:DP:GQ:PL	1/1:2,13:18:6:315,6,0
chr3	108224685	.	C	CA	437.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=0.776;QD=11.52;ReadPosRankSum=-0.808;SOR=0.714	GT:AD:DP:GQ:PL	0/1:16,22:46:99:466,0,248
chr3	108229437	.	G	GA	104.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=8.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.38;ReadPosRankSum=-0.275;SOR=2.777	GT:AD:DP:GQ:PL	0/1:21,10:31:99:133,0,610
chr3	108229438	.	A	AG	279.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=13.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.74;ReadPosRankSum=-0.974;SOR=0.018	GT:AD:DP:GQ:PL	0/1:15,17:32:99:308,0,404
chr3	108286947	.	G	GA	1422.77	PASS	AC=2;AF=1;AN=2;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=3.651	GT:AD:DP:GQ:PL	1/1:0,52:55:99:1451,167,0
chr3	108335253	.	A	AT	258.84	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=18.49;ReadPosRankSum=1.74;SOR=3.912	GT:AD:DP:GQ:PL	1/1:1,13:14:18:287,18,0
chr3	108344636	.	TA	T	425.77	PASS	AC=2;AF=1;AN=2;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=22.41;SOR=3.16	GT:AD:DP:GQ:PL	1/1:0,19:21:67:451,67,0
chr3	108355423	.	AT	A	1008.77	PASS	AC=2;AF=1;AN=2;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.87;SOR=3.967	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1037,117,0
chr3	108355575	.	CT	C	2066.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;MQRankSum=0.498;QD=18.62;ReadPosRankSum=0.111;SOR=0.745	GT:AD:DP:GQ:PL	1/1:13,98:127:38:2095,38,0
chr3	108356501	.	T	TTTAAGGTAGTA	950.77	PASS	AC=2;AF=1;AN=2;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.07;SOR=6.184	GT:AD:DP:GQ:PL	1/1:0,21:21:65:979,65,0
chr3	108396183	.	A	AT	208.77	PASS	AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=29.82;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,7:10:29:199,29,0
chr3	108402894	.	CAT	C	365.78	PASS	AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.19;QD=24.47;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:27:394,27,0
chr3	108541931	.	CAT	C	680.77	PASS	AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=3.258	GT:AD:DP:GQ:PL	1/1:0,16:16:48:709,48,0
chr3	108627203	.	CAAA	C,CAAAAA	171.77	PASS	AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=21.47;ReadPosRankSum=0.157;SOR=1.402	GT:AD:DP:GQ:PL	1/2:1,3,4:8:99:200,99,157,107,0,118
chr3	108703391	.	T	TGG	138.03	PASS	AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:12:166,12,0
chr3	108705715	.	A	AT	665.77	PASS	AC=2;AF=1;AN=2;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.61;SOR=0.846	GT:AD:DP:GQ:PL	1/1:0,26:26:78:694,78,0
chr3	108725848	.	ATTGC	A	4337.77	PASS	AC=2;AF=1;AN=2;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=33.85;SOR=1.132	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,96:96:99:1|1:108725848_ATTGC_A:4366,295,0
chr3	108746411	.	A	ATT	92.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=0.712;SOR=0.527	GT:AD:DP:GQ:PL	0/1:2,5:7:32:121,0,32
chr3	108751867	.	GTTA	G	241.84	PASS	AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.43;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	108754320	.	T	TAA	981.77	PASS	AC=2;AF=1;AN=2;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;QD=33.57;SOR=4.68	GT:AD:DP:GQ:PL	1/1:0,24:32:88:969,88,0
chr3	110611537	.	C	CT	63.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DP=15;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.38;ReadPosRankSum=0.697;SOR=0.105	GT:AD:DP:GQ:PL	0/1:4,6:10:40:92,0,40
chr3	110830746	.	ATGTGTGTG	A	279.77	PASS	AC=2;AF=1;AN=2;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.9;QD=32.12;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,4:9:26:235,26,0
chr3	110866195	.	CT	C	137.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.38;ReadPosRankSum=0.52;SOR=0.425	GT:AD:DP:GQ:PL	0/1:41,17:69:99:166,0,955
chr3	111316886	.	C	CTTATG	531.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=-1.319;SOR=1.536	GT:AD:DP:GQ:PL	0/1:23,13:36:99:560,0,1505
chr3	111638240	.	C	CT	24.57	PASS	AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.19;QD=12.29;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0
chr3	111685347	.	CAT	C	175.9	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=3.611	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,5:5:15:1|1:111685328_T_C:204,15,0
chr3	111685374	.	GGT	G	45.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.09;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.16;ReadPosRankSum=1.18;SOR=0.18	GT:AD:DP:GQ:PL	0/1:8,3:11:74:74,0,243
chr3	111705275	.	G	GTTTGT	929.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.027;QD=17.54;ReadPosRankSum=-0.572;SOR=1.379	GT:AD:DP:GQ:PL	0/1:29,24:53:99:958,0,1466
chr3	111710201	.	AT	A	698.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=6.614;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.66;QD=9.07;ReadPosRankSum=-0.685;SOR=0.172	GT:AD:DP:GQ:PL	0/1:44,33:77:99:727,0,1121
chr3	111769369	.	G	GAAAAAAA	152.03	PASS	AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.16;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	111805438	.	G	GT	345.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.78;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=0.626;SOR=1.751	GT:AD:DP:GQ:PL	0/1:13,12:25:99:374,0,411
chr3	111828384	.	G	GT	8469.77	PASS	AC=2;AF=1;AN=2;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=32.08;SOR=1.102	GT:AD:DP:GQ:PL	1/1:0,264:264:99:8498,809,0
chr3	111838203	.	CAA	C	383.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.509;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=7.005;MLEAC=1;MLEAF=0.5;MQ=59.26;MQRankSum=-1.115;QD=15.99;ReadPosRankSum=-0.464;SOR=0.055	GT:AD:DP:GQ:PL	0/1:13,11:24:99:412,0,583
chr3	111849123	.	CA	C	478.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1;QD=14.96;ReadPosRankSum=0.511;SOR=0.818	GT:AD:DP:GQ:PL	0/1:15,17:32:99:507,0,404
chr3	111873902	.	T	TA	678.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0;DP=111;ExcessHet=3.0103;FS=5.068;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.877;QD=9.05;ReadPosRankSum=-0.176;SOR=1.331	GT:AD:DP:GQ:PL	0/1:38,37:90:99:707,0,651
chr3	111949969	.	GTCTC	G	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.42;MQRankSum=-0.674;QD=23.69;ReadPosRankSum=1.15;SOR=0.446	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,3:4:88:0|1:111949969_GTCTC_G:123,0,88
chr3	111949992	.	CCTTT	C	136.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.95;MQRankSum=-0.524;QD=27.35;ReadPosRankSum=0;SOR=0.693	GT:AD:DP:GQ:PGT:PID:PL	0/1:1,4:5:85:0|1:111949969_GTCTC_G:165,0,85
chr3	111950021	.	T	TTTTC	91.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.56;MQRankSum=-1.036;QD=18.35;ReadPosRankSum=0.524;SOR=1.022	GT:AD:DP:GQ:PL	0/1:2,3:5:85:120,0,85
chr3	111981696	.	CA	C	409.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=0.959;QD=21.57;ReadPosRankSum=-0.207;SOR=1.061	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,11:19:99:0|1:111981696_CA_C:438,0,450
chr3	111999736	.	A	ACTTGTTTTCT	301.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.719;ClippingRankSum=0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=33.53;ReadPosRankSum=0.282;SOR=2.093	GT:AD:DP:GQ:PL	0/1:2,7:9:99:330,0,119
chr3	112253058	.	C	CA	1073.77	PASS	AC=2;AF=1;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;MQRankSum=0.313;QD=23.86;ReadPosRankSum=0.336;SOR=0.504	GT:AD:DP:GQ:PL	1/1:2,43:48:95:1102,95,0
chr3	112253193	.	C	CA	824.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=1.7;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0;QD=16.83;ReadPosRankSum=0.77;SOR=0.495	GT:AD:DP:GQ:PL	0/1:11,38:63:99:853,0,113
chr3	112301458	.	C	CCTTAGTAAT	2961.77	PASS	AC=2;AF=1;AN=2;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.66;QD=30.5;SOR=5.549	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2990,204,0
chr3	112538571	.	CT	C	581.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.205;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.823;QD=10.98;ReadPosRankSum=1.08;SOR=1.378	GT:AD:DP:GQ:PL	0/1:21,32:55:99:610,0,427
chr3	112545910	.	GT	G	1999.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DP=134;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.09;QD=15.5;ReadPosRankSum=0.498;SOR=0.581	GT:AD:DP:GQ:PL	0/1:69,60:129:99:2028,0,2363
chr3	112650217	.	ATACT	A	94.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.69;ReadPosRankSum=-1.15;SOR=2.788	GT:AD:DP:GQ:PL	0/1:1,3:4:54:123,0,54
chr3	112719791	.	CA	C	107.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.11;ReadPosRankSum=-0.81;SOR=0.473	GT:AD:DP:GQ:PL	0/1:38,13:68:99:136,0,845
chr3	112727512	.	TA	T	28.99	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.25;ReadPosRankSum=1.15;SOR=0.446	GT:AD:DP:GQ:PL	0/1:1,3:4:14:57,0,14
chr3	112732309	.	GT	G	368.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=0.624;QD=16.76;ReadPosRankSum=1.14;SOR=4.003	GT:AD:DP:GQ:PL	0/1:6,16:27:65:397,0,65
chr3	112968959	.	C	CAGA	121.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=0.566;QD=17.4;ReadPosRankSum=-0.652;SOR=0.223	GT:AD:DP:GQ:PL	0/1:3,4:7:99:150,0,157
chr3	113013848	.	A	AT	103.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.29;ReadPosRankSum=0;SOR=0.368	GT:AD:DP:GQ:PL	0/1:2,4:6:57:132,0,57
chr3	113048792	.	C	CA	36.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-0.51;ClippingRankSum=0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.83;ReadPosRankSum=-1.047;SOR=0.18	GT:AD:DP:GQ:PL	0/1:9,4:13:65:65,0,171
chr3	113175944	.	TA	T	559.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-1.