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SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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+ Genes

Genes:

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 4
Number of Genes: 0

Export to: CSV
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Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View msp09 snp 1 rs11577583
dbSNP Clinvar 		23286224 226.8 T C PASS 1/1 7 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.40056 0.40060 None None None None None None LACTBL1|0.128592718|46.08%
View msp09 snp 16 rs9934438
dbSNP Clinvar 		31104878 2052.77 G A PASS 1/1 56 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.35583 0.35580 None None None None None None VKORC1|0.065829052|58.39%
View msp09 snp 6 rs3757318
dbSNP Clinvar 		151914113 73.77 G A PASS 0/1 6 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.09006 0.09006 None None None None None None CCDC170|0.073258235|56.72%
View msp09 snp 19 rs3848638
dbSNP Clinvar 		1383649 77.77 G T PASS 0/1 11 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.38119 0.38120 None None None None None None NDUFS7|0.029181719|69.79%
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