+ Filter Options

SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

+ Genes

Genes:

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 31
Number of Genes: 0

Export to: CSV
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Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View galaxy43-snpeff_eff__on_data_37 21 . 45298989 0.976895 G T . 1/1 2 None None None None None None None None None AGPAT3|0.055696887|61.01%
View galaxy43-snpeff_eff__on_data_37 21 . 45298974 0.621012 T A . 1/1 2 None None None None None None None None None AGPAT3|0.055696887|61.01%
View galaxy43-snpeff_eff__on_data_37 21 . 45298952 0.230543 T G . 1/1 2 None None None None None None None None None AGPAT3|0.055696887|61.01%
View galaxy43-snpeff_eff__on_data_37 21 . 45298944 1.02571 CATG AATT . 1/1 2 None None None None None None None None None AGPAT3|0.055696887|61.01%
View galaxy43-snpeff_eff__on_data_37 21 . 44417071 1.81189 A C . 1/1 2 None None None None None None None None None PKNOX1|0.097034249|51.72%
View galaxy43-snpeff_eff__on_data_37 21 . 44417053 19.9839 CG... TG... . 1/1 2 None None None None None None None None None PKNOX1|0.097034249|51.72%
View galaxy43-snpeff_eff__on_data_37 21 . 44417048 3.50615 T G . 1/1 2 None None None None None None None None None PKNOX1|0.097034249|51.72%
View galaxy43-snpeff_eff__on_data_37 21 . 36214858 3.48037 A T . 1/1 2 None None None None None None None None None RUNX1|0.998765461|0.45%
View galaxy43-snpeff_eff__on_data_37 21 . 36214846 2.54116 A T . 1/1 2 None None None None None None None None None RUNX1|0.998765461|0.45%
View galaxy43-snpeff_eff__on_data_37 21 . 36214820 19.4901 AA... TC... . 1/1 2 None None None None None None None None None RUNX1|0.998765461|0.45%
View galaxy43-snpeff_eff__on_data_37 21 . 35315473 1.60077 A G . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 32614193 0.103862 G T . 1/1 2 None None None None None None None None None TIAM1|0.527869798|14.65%
View galaxy43-snpeff_eff__on_data_37 21 . 32614182 0.103712 CAG CG . 1/1 2 None None None None None None None None None TIAM1|0.527869798|14.65%
View galaxy43-snpeff_eff__on_data_37 21 . 27116278 1.79323 T C . 1/1 2 None None None None None None None None None GABPA|0.49366631|16.15%
View galaxy43-snpeff_eff__on_data_37 21 . 27116242 1.80009 A C . 1/1 2 None None None None None None None None None GABPA|0.49366631|16.15%
View galaxy43-snpeff_eff__on_data_37 21 . 27116224 0.900799 GC CT . 1/1 2 None None None None None None None None None GABPA|0.49366631|16.15%
View galaxy43-snpeff_eff__on_data_37 21 . 22189500 0.241678 GGCCT AGCCA . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 rs553479317
dbSNP Clinvar 		22189494 0.244995 C T . 1/1 2 None None None 0.00140 0.00140 None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 22189483 0.238229 CG... CA... . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 22189462 0.243436 AT... CT... . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 rs113348732
dbSNP Clinvar 		22189450 0.243801 G A . 1/1 2 None None None 0.00240 0.00240 None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604181 1.41605 C A . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604172 1.41605 C A . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604161 3.14452 C T . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604155 1.41605 G C . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604147 10.5888 C T . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604140 1.41605 C A . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604124 10.5888 C A . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604112 1.9031 C A . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604104 10.5888 C T . 1/1 2 None None None None None None None None None None
View galaxy43-snpeff_eff__on_data_37 21 . 14604098 2.48382 G C . 1/1 2 None None None None None None None None None None
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