SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 314
Number of Genes: 2

Export to: CSV

NLGN4Y

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View child filtered_variants Y rs373089425
dbSNP Clinvar
16952767 880.14 C T SNP_StrandBias 1/1 9 SYNONYMOUS_CODING LOW SILENT 0.00041 None None None None None None NLGN4Y|0.004668477|86.25%
View child filtered_variants Y rs767683335
dbSNP Clinvar
16952665 3523.13 C T SNP_MappingQuality;SNP_StrandBias 1/1 40 SYNONYMOUS_CODING LOW SILENT None None None None None None NLGN4Y|0.004668477|86.25%
View child filtered_variants Y rs764411802
dbSNP Clinvar
16952347 70.51 T C PASS 1/1 3 SYNONYMOUS_CODING LOW SILENT None None None None None None NLGN4Y|0.004668477|86.25%
View child filtered_variants Y rs760725693
dbSNP Clinvar
16952944 33.7 G A PASS 1/1 1 SYNONYMOUS_CODING LOW SILENT None None None None None None NLGN4Y|0.004668477|86.25%
View child filtered_variants Y rs767640863
dbSNP Clinvar
16952855 25.57 A G LowQual 1/1 2 NON_SYNONYMOUS_CODING MODERATE MISSENSE 1.00 0.00 None None None None None None NLGN4Y|0.004668477|86.25%

SLC9B1P1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View child filtered_variants Y rs75531638
dbSNP Clinvar
13506562 106.59 A G SnpCluster 0/1 6 SYNONYMOUS_CODING LOW SILENT None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs373363143
dbSNP Clinvar
13524639 628.92 C T SNP_MappingQuality 0/1 40 NON_SYNONYMOUS_CODING MODERATE MISSENSE 1.00 0.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs77147889
dbSNP Clinvar
13524594 357.05 G T PASS 1/1 5 NON_SYNONYMOUS_CODING MODERATE MISSENSE 1.00 0.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs373109292
dbSNP Clinvar
13500658 69.04 T A SNP_MappingQuality;SnpCluster 0/1 7 STOP_GAINED HIGH NONSENSE None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs78395530
dbSNP Clinvar
13524548 1002.14 T G PASS 1/1 12 NON_SYNONYMOUS_CODING MODERATE MISSENSE 1.00 0.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs779917392
dbSNP Clinvar
13500655 102.16 C G SNP_MappingQuality;SnpCluster 0/1 7 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.00 1.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs369438688
dbSNP Clinvar
13496463 281.88 AAC A PASS 0/1 11 FRAME_SHIFT HIGH None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs78220120
dbSNP Clinvar
13524664 2957.92 C A SNP_MappingQuality 0/1 51 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.02 1.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs754488883
dbSNP Clinvar
13506585 64.79 A T SnpCluster 0/1 3 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.36 0.01 None None None None None None SLC9B1P1|0.002112226|90.7%
View child filtered_variants Y rs779673130
dbSNP Clinvar
13506575 62.72 C T SnpCluster 0/1 4 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.51 0.03 None None None None None None SLC9B1P1|0.002112226|90.7%
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View child filtered_variants Y rs933969611
dbSNP Clinvar
13489446 215.92 G A SnpCluster 0/1 12 None None None None None None None None None None
View child filtered_variants Y rs921247043
dbSNP Clinvar
13489445 368.92 C T SnpCluster 0/1 14 None None None None None None None None None None
View child filtered_variants Y . 13489441 152.92 A C SNP_MappingQuality;SnpCluster 0/1 14 None None None None None None None None None None
View child filtered_variants Y . 13489437 53.55 C T SNP_LowQualityDepth;SnpCluster 0/1 15 None None None None None None None None None None
View child filtered_variants Y . 13489435 131.92 C A SNP_MappingQuality;SnpCluster 0/1 15 None None None None None None None None None None
View child filtered_variants Y rs75123822
dbSNP Clinvar
13489434 266.92 G A SnpCluster 0/1 16 None None None None None None None None None None
View child filtered_variants Y . 13489433 140.92 G A SnpCluster 0/1 15 None None None None None None None None None None
View child filtered_variants Y . 13489426 155.93 G A SNP_MappingQuality;SnpCluster 0/1 18 None None None None None None None None None None
View child filtered_variants Y rs75169378
dbSNP Clinvar
13489425 1610.16 T C SNP_MappingQuality;SnpCluster 0/1 19 None None None None None None None None None None
View child filtered_variants Y rs950619184
dbSNP Clinvar
13489418 227.92 C G SNP_MappingQuality;SnpCluster 0/1 21 None None None None None None None None None None
View child filtered_variants Y . 13489417 147.29 T A SNP_MappingQuality;SnpCluster 0/1 13 None None None None None None None None None None
View child filtered_variants Y . 13489410 62.99 T C SNP_MappingQuality;SnpCluster 0/1 13 None None None None None None None None None None
View child filtered_variants Y rs1026211533
dbSNP Clinvar
13489409 147.36 C A SNP_MappingQuality;SnpCluster 0/1 13 None None None None None None None None None None
View child filtered_variants Y . 13489401 73.76 A G SNP_MappingQuality;SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y . 13489396 305.92 C A SNP_MappingQuality;SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y rs111804532
dbSNP Clinvar
13489393 1212.91 T A,G SNP_MappingQuality;SnpCluster 1/2 10 None None None None None None None None None None
View child filtered_variants Y . 13489392 130.43 C A SNP_MappingQuality;SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y . 13489386 248.92 G A SNP_MappingQuality;SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y rs999005805
dbSNP Clinvar
13489384 251.92 G A SNP_MappingQuality;SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y . 13489383 191.88 CG C PASS 0/1 10 None None None None None None None None None None
View child filtered_variants Y . 13489372 253.55 G A SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y rs369789833
dbSNP Clinvar
13489371 156.27 C T SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y . 13489370 63.6 C A SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y rs79293394
dbSNP Clinvar
13489367 978.9 T C,A SnpCluster 1/2 11 None None None None None None None None None None
View child filtered_variants Y rs909937983
dbSNP Clinvar
13489361 162.1 G A SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y rs76489488
dbSNP Clinvar
13489359 209.92 G A SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y rs75451550
dbSNP Clinvar
13489357 274.18 G A SnpCluster 0/1 8 None None None None None None None None None None
View child filtered_variants Y rs113728522
dbSNP Clinvar
13489352 202.88 G T SnpCluster 0/1 9 None None None None None None None None None None
View child filtered_variants Y rs1022892940
dbSNP Clinvar
13489340 134.55 T G SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y rs373083696
dbSNP Clinvar
13489330 124.46 A G SnpCluster 0/1 12 None None None None None None None None None None
View child filtered_variants Y rs900058989
dbSNP Clinvar
13489313 209.93 G A SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y . 13489304 167.97 G T SnpCluster 0/1 9 None None None None None None None None None None
View child filtered_variants Y rs113863647
dbSNP Clinvar
13489303 404.92 G C,A SnpCluster 0/1 9 None None None None None None None None None None
View child filtered_variants Y rs75046726
dbSNP Clinvar
13489300 894.9 A C,G SnpCluster 1/2 9 None None None None None None None None None None
View child filtered_variants Y . 13488332 58.21 T C SnpCluster 0/1 8 None None None None None None None None None None
View child filtered_variants Y rs111232028
dbSNP Clinvar
13488330 682.13 A C,G SnpCluster 1/2 8 None None None None None None None None None None
View child filtered_variants Y . 13488325 58.21 G A SnpCluster 0/1 7 None None None None None None None None None None
View child filtered_variants Y . 13488306 134.92 G T SnpCluster 0/1 4 None None None None None None None None None None
View child filtered_variants Y . 13488302 21.2 CC... C LowQual 0/1 4 None None None None None None None None None None
View child filtered_variants Y . 13488299 67.53 GG... G PASS 0/1 5 None None None None None None None None None None
View child filtered_variants Y . 13488298 353.92 C T SnpCluster 0/1 3 None None None None None None None None None None
View child filtered_variants Y . 13488282 175.18 A G SnpCluster 1/1 3 None None None None None None None None None None
View child filtered_variants Y rs79942147
dbSNP Clinvar
13488224 109.94 G A SnpCluster 0/1 4 None None None None None None None None None None
View child filtered_variants Y rs75512131
dbSNP Clinvar
13488215 148.92 C A SnpCluster 0/1 2 None None None None None None None None None None
View child filtered_variants Y . 13488207 298.56 T A SnpCluster 1/1 4 None None None None None None None None None None
View child filtered_variants Y . 13488204 31.76 G T SnpCluster 0/1 4 None None None None None None None None None None
View child filtered_variants Y . 13488198 284.93 G C SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y . 13488195 287.93 C A SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y rs111257196
dbSNP Clinvar
13488192 287.93 A G SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y rs74953116
dbSNP Clinvar
13488183 284.93 G A SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y rs80229607
dbSNP Clinvar
13488176 443.66 A G SnpCluster 1/1 5 None None None None None None None None None None
View child filtered_variants Y . 13488171 34.22 C A SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y . 13488168 326.93 G A SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y rs112608166
dbSNP Clinvar
13488157 421.92 C T SnpCluster 0/1 6 None None None None None None None None None None
View child filtered_variants Y . 13488155 31.2 A C SnpCluster 0/1 6 None None None None None None None None None None
View child filtered_variants Y rs999087244
dbSNP Clinvar
13488145 323.92 G A SnpCluster 0/1 6 None None None None None None None None None None
View child filtered_variants Y rs903181197
dbSNP Clinvar
13488144 31.2 C T SnpCluster 0/1 6 None None None None None None None None None None
View child filtered_variants Y . 13488140 22.19 GC G LowQual 0/1 6 None None None None None None None None None None
View child filtered_variants Y rs77272178
dbSNP Clinvar
13488138 323.92 G A SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y . 13488130 278.92 C T SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y rs79687118
dbSNP Clinvar
13488124 89.67 C T SnpCluster 0/1 3 None None None None None None None None None None
View child filtered_variants Y . 13488116 182.89 GC G PASS 0/1 4 None None None None None None None None None None
View child filtered_variants Y . 13488101 70.37 A C SnpCluster 0/1 6 None None None None None None None None None None
View child filtered_variants Y rs78531767
dbSNP Clinvar
13488100 539.3 C G SnpCluster 1/1 5 None None None None None None None None None None
View child filtered_variants Y . 13488095 236.93 A T SnpCluster 0/1 5 None None None None None None None None None None
View child filtered_variants Y rs999057707
dbSNP Clinvar
13488090 103.29 G A SnpCluster 0/1 6 None None None None None None None None None None
View child filtered_variants Y . 13488089 397.12 C CAGAA PASS 0/1 4 None None None None None None None None None None
View child filtered_variants Y . 13488086 109.2 C A SnpCluster 0/1 7 None None None None None None None None None None
View child filtered_variants Y . 13488085 302.88 ACCCC A PASS 0/1 7 None None None None None None None None None None
View child filtered_variants Y . 13488075 305.92 A G SnpCluster 0/1 7 None None None None None None None None None None
View child filtered_variants Y rs776245137
dbSNP Clinvar
13488074 980.15 C G SnpCluster 1/1 7 None None None None None None None None None None
View child filtered_variants Y rs76327190
dbSNP Clinvar
13488069 907.27 G A SnpCluster 1/1 8 None None None None None None None None None None
View child filtered_variants Y rs929168246
dbSNP Clinvar
13488065 181.17 G A SnpCluster 0/1 9 None None None None None None None None None None
View child filtered_variants Y rs919187581
dbSNP Clinvar
13488064 470.92 C T SnpCluster 0/1 10 None None None None None None None None None None
View child filtered_variants Y . 13488063 461.88 A T SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y rs76490107
dbSNP Clinvar
13488056 23.18 G T LowQual;SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y . 13488054 470.92 G C SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y rs75455857
dbSNP Clinvar
13488052 602.92 T C SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y . 13488051 467.92 C T SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y . 13488049 37.52 G A SNP_LowQualityDepth;SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y . 13488044 464.88 C CGT PASS 0/1 9 None None None None None None None None None None
View child filtered_variants Y rs957154314
dbSNP Clinvar
13488043 422.92 A G,T SnpCluster 0/1 11 None None None None None None None None None None
View child filtered_variants Y . 13488038 449.88 TCC T PASS 0/1 12 None None None None None None None None None None
View child filtered_variants Y . 13488037 680.92 C A SnpCluster 0/1 12 None None None None None None None None None None
View child filtered_variants Y . 13488036 455.92 C A SnpCluster 0/1 12 None None None None None None None None None None