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INDIVIDUALS:
sample 1000
na12878 recessive
exome_4_els var annotated
exome_3_eds var annotated
4501349 filtered
stv2_auto_user_qd5-282-stv2_20170530_435_variantreport
a7kcg_miseq3_nih-1_s1
hc082_s4_l001_r_raw
pid616-variant_table
kuhno_1-10 ip_264_1.variant2
kuhno_1-10 ip_264_2.variant3
kuhno_1-10 none.variant
kuhno_1-10 up_218_1.variant
kuhno_1-10 up_218_2.variant
kuhno_1-10 up_218_3.variant
kuhno_1-10 up_218_4.variant
kuhno_1-10 up_218_5.variant
kuhno_1-10 up_218_6.variant
kuhno_1-10 up_218_8_variants_none.variant
nordenskjold_uwcmg_ah_1 hf final 171270
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Pesci_M_mother
nordenskjold_uwcmg_ah_1 hf final 171272
nordenskjold_uwcmg_ah_1 hf final 171796
3029
3030
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_C_prob
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father
5pct_s1-lof
5pct_s1-unified-snp-indle
dnl46897_jcv imported
1313946
tsvc_variants_ionxpress_001
tsvc_variants_ionxpress_002
we_ex1704620
exome_4_els var annotated
genome_ann_shippy_full_20150426064857
73411510240357_annotated
7341maas0357_annotated
genome_mike_maas_v4_full_20170611220637-output
genomapp23a_completereport_20170505
snpsforvep
genome_me_full_20160129125336
paciente_3751_26_mayo_17_26may2017_15_09_01_836
de2670_08232016_bwamem filtered haplotype snpindel
dnn62 snp
dxc01 snp
lfl38 snp
msp09 snp
sp16_multisample SP16_819
sp16_multisample SP16_820
sp16_multisample SP16_961
sp16_819
sp16_961
sp16_820
ba exome
sample_cs2-dmso_recalibrated_variants_snps_only_hard_filtered_snps_only
sample_cs2-enzar_recalibrated_variants_snps_only_hard_filtered_snps_only
trf_44289
8754_onol_s2_vs_onol_n_ucla TUMOR
8754_onol_s2_vs_onol_n_ucla NORMAL
1-p159 final
gird-c1a filtered variants
na12878 dominant
goku_snps_indels
concordancevcf_d5_20161214 GATK-HC_D5
concordancevcf_d5_20161214 Mpileup_D5
concordancevcf_d5_20161214 Pindel_D5
concordancevcf_d5_20161214 FreeBayes_D5
concordancevcf_d5_20161214 VarScan_D5
nk_full_variant_table
kk_full_variant_table
ek_full_variant_table
ldp546
sample 1000
valid-000001933_mtdepth-216 smcounter cut
lb9428 final
vcfbeta-gs000035329-asm
0010dbs 0_bwamem sort rmdup readfiltered realn recal 0_gatk_hc
10 1016j ogc 2015 10
muestra3_s1
muestra2_s1
muestra1_s1
carsonmiller_e4113_h150317_7_mutation_report1-ngs408 10
filter output step4
ngs049p_s3
panvjj_normal_tumor strelka indels gatk annotated NORMAL
panvjj_normal_tumor strelka indels gatk annotated TUMOR
exome_all
54144-mm-ensemble
17nr2143
i26272829p2 hg19_multiannofinal-pacientes-f8765-1-e-f9759-1
manuela_niro
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc247
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc246
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc248
genome_patricia_tachinardi_andrade_silva_v4_full_20170430162109
oje115-001 vqsr all
genome_simone_niciura_v4_full_20170629062030
dipg0076_interval TUMOR
dipg0076_interval NORMAL
gg_mutation_report
ee
grc14378020_exome
grc14378018_exome
grc14378021_exome
grc14378019_exome
grc14378022_exome
family15 variants v3
i29p2-c-18094-iii
h1esc_mtesr1 samtools indel
test
v2649_v1_non-filtered_2017-07-24_10_39_21
v2649_v1_non-filtered_2017-07-24_10_39_21
62393865_s40 mvar 62393865_S40.FREEBAYES
62393865_s40 mvar 62393865_S40.GATK
62393865_s40 mvar 62393865_S40.SAMTOOLS
cmi
ppox
ppox
nextera4_03 03 2017_brca_13_s13_v5
hg001_grch37_giab_highconf_cg-illfb-illgatkhc-ion-10x-solid_chrom1-x_v 3 3 2_highconf_pgandrtgphasetransfer
tsc_27 01 2017_8_s8_v7
tsc_27 01 2017_8_s8_v7
cmt4
larissa_s11
myexome-1
c002_attactcg-tatagcct srt mkdups flt
c003_attactcg-atagaggc srt mkdups flt
c005_attactcg-cctatcct srt mkdups flt
final-ma145
mpe115_v1112
pep_0060
gordonsepilepsy filtered 2076
gordonsepilepsy filtered 2077
gordonsepilepsy filtered 2484
gordonsepilepsy filtered 2486
gordonsepilepsy filtered 2487_pool
gordonsepilepsy normalized 2076
gordonsepilepsy normalized 2077
gordonsepilepsy normalized 2484
gordonsepilepsy normalized 2486
gordonsepilepsy normalized 2487_pool
outputvcforig-sve05k
12ac02301-1_s1 genome
13ac00301-2_s1 genome
15ac02301_s1 genome
15ac02302_s1 genome
15ac02302_s1 genome
15ac02303_s1 genome
2-ac-cap17_s1 genome
15ac02301_s1 genome
15ac02303_s1 genome
15ac02303_s1 genome
16hpc01701_s1 genome
16hpc01702_s1 genome
16hpc01703_s1 genome
15a02301_s1 genome
09pla02101_s1 genome
zehra_acar_variant_analysis_report-2
genome_adam_cuomo_v4_full_20170809151438
sl85 samtools snp
gpp10314_20120828021333_nucseek
gpp10315_20120828021333_nucseek
genome_none_none_v4_full_20170814115900 Aug
genome_none_none_v4_full_20170814115900 14
genome_none_none_v4_full_20170814115900 11:59:00
genome_none_none_v4_full_20170814115900 2017
variant_list
l-322-filtered-snps-indels
16on271_ionxpress_012
eb408_unique
eb409_unique
myexome-1 annotated mendelmd
myexome-1 annotated mendelmd
idash_ishimaki
idp34_annotado
combined sample_100.variant
combined sample_38.variant2
combined sample_39.variant3
combined sample_40.variant4
combined sample_41.variant5
combined sample_42.variant6
combined sample_43.variant7
combined sample_44.variant8
combined sample_45.variant9
combined sample_46.variant10
combined sample_47.variant11
combined sample_48.variant12
combined sample_49.variant13
combined sample_50.variant14
combined sample_51.variant15
combined sample_53.variant16
combined sample_54.variant17
combined sample_55.variant18
combined sample_56.variant19
combined sample_57.variant20
combined sample_59.variant21
combined sample_60.variant22
combined sample_61.variant23
combined sample_62.variant24
combined sample_63.variant25
combined sample_64.variant26
combined sample_66.variant27
combined sample_67.variant28
combined sample_68.variant29
combined sample_69.variant30
combined sample_70.variant31
combined sample_71.variant32
combined sample_72.variant33
combined sample_73.variant34
combined sample_74.variant35
combined sample_91.variant36
combined sample_92.variant37
combined sample_93.variant38
combined sample_94.variant39
combined sample_95.variant40
combined sample_96.variant41
combined sample_97.variant42
combined sample_98.variant43
combined sample_99.variant44
mt2379_s1
fyc5
dna-data-2017-08-27
isabela
g104-1_bowtie2_dupremoved_realigned_v0 1 19mpileup_dummy
anemia
a_kheyri final
pytbv dbsnpa
1445140
46651510241455_annotated
mm170802ap
an035_hg19
allfamilies AWI
allfamilies AWJ
allfamilies AWK
allfamilies AWL
allfamilies AWM
allfamilies BIR
allfamilies BQ0
allfamilies BIP
allfamilies BIQ
fam3 AWI
fam3 AWJ
fam3 AWK
n498_snp_indel_anno
sample13_s1_s1_001_filtered_dp10_splitted
sample14_s2_s2_001_filtered_dp10_splitted
sample15_s3_s3_001_filtered_dp10_splitted
p0085_filtered
variants
refseq_hg38_cds merged symbol igv-capture hist coverage
chu17257-cha-zoe_s2
full_genome
15071143293692125889425
1507114365681-1642853908
genome_tim_dotson_v5_full_20171008065907
genesmarker
mitovcf_file
snps raw-snps 17_0233
snps raw-snps 17_0234
snps raw-snps 17_0235
62408779_s7 mvar 62408779_S7.FREEBAYES
62408779_s7 mvar
62408779_s7 mvar 62408779_S7.GATK
62408779_s7 mvar 62408779_S7.SAMTOOLS
genome_christian_muller_v3_full_20161102032233
genome_christian_muller_v3_full_20161102032233
genome_christian_muller_v3_full_20171011070154 Oct
genome_christian_muller_v3_full_20171011070154 11
genome_christian_muller_v3_full_20171011070154 07:01:54
genome_christian_muller_v3_full_20171011070154 2017
ashksample HG002
ashksample HG003
ashksample HG004
mpileup-final_calls_32716
ioncode_0105_fn25 bam-25 IonCode_0105_FN25.bam
ioncode_0105_fn25 bam-25 [25]
ioncode_0105_fn25 bam-25 (single)
ioncode_0105_fn25 bam-25 (Reads,
ioncode_0105_fn25 bam-25 Locally
ioncode_0105_fn25 bam-25 Realigned,
ioncode_0105_fn25 bam-25 Variants,
ioncode_0105_fn25 bam-25 EXON,
ioncode_0105_fn25 bam-25 AAC,
ioncode_0105_fn25 bam-25 AIFOG)
17-11096s1 germline-multisample gatk annotated 17-11096s1
17-11096s1 germline-multisample gatk annotated 17-11097s2
17-11096s1 germline-multisample gatk annotated 17-11098s1
17-11096s1 germline-multisample gatk annotated 17-11099s1
dossier4-di450-2-b00h4r3_hg19_snp annot
r_2016_06_15_14_03_10_user_mx-267-exomess_pool37_5b552 570 872
5500xl_23312002_2013_06_25_exomas16_2h495 processed recal
5500xl_23312002_2013_06_25_exomas16_2h496 processed recal
ca
snps raw-variants selected
snps raw
71161510240931_annotated-4
fakhrieh_salemi gatk snp
fakhrieh_salemi gatk snp
index31
fakhrieh_salemi gatk indel
filter output step3
chh6738_annovar
82937_v1
5840_s17
5516_s23
75_filt_10x
15001702300578a snp-1
qw2315_combined_r1 fastq raw
62388010_s7 mvar 62388010_S7.FREEBAYES
62388010_s7 mvar 62388010_S7.GATK
62388010_s7 mvar 62388010_S7.SAMTOOLS
eb1954_unique
f1 H02H9ALXX_1_F01_K0512P_Human_NoIndex_2-25348_Spuler_Lab_R1
f1 (paired)
f1 trimmed
f1 (paired)
f1 (Reads)
f1 -
f1 locally
f1 realigned
f1 (Variants,
f1 AAC)
allllllllllllyblswd
pdb336 vep
pdb346 vep
327_c879tanxx_gatagaca_l005 bam filtered vep Protein_position
327_c879tanxx_gatagaca_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Codons
327_c879tanxx_gatagaca_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Extra
339_c879tanxx_aaggacac_l005 bam filtered vep Protein_position
327_c879tanxx_gatagaca_l005 bam filtered vep Protein_position
pg_merged_chr19 recode PG1
339_c879tanxx_aaggacac_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Codons
339_c879tanxx_aaggacac_l005 bam filtered vep Codons
339_c879tanxx_aaggacac_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Extra
339_c879tanxx_aaggacac_l005 bam filtered vep Extra
pg_merged_chr19 recode PG2
pg_merged_chr19 recode PG3
pg_merged_chr19 recode PG4
tz1
tz1
wes_0001 hg19 bwa gatk freebayes combined
fam5 cleaned 3403_16
fam5 cleaned 3404_16
fam5 cleaned 3405_16
fam5 cleaned 3422_16
variants default
variants default
variants default
variants default
cds 3403_16
cds 3404_16
cds 3405_16
cds 3422_16
snps raw-variants selected 3403_16
snps raw-variants selected 3404_16
snps raw-variants selected 3405_16
snps raw-variants selected 3422_16
tsvc_variants_ionxpress_032
24_genetics_snv_99 8 slt
b12
1528098
damold_variant
damold_variant
tumor_sample brca
t30541_annotated_calls
t30541_annotated_calls
tumor_sample brca
nipe_alignment snps
halo_cad_march_17
halo_cad_march_17
mm170835gc
mm171122md
261_emreatak_v1_non-filtered_2016-09-01_06_25_23
upload2ensembl
snps raw MG15-000
snps raw MG15-001
snps raw MG15-002
snps raw SHA-06-33146
watson
sg5_onco_2_s2_v13
rawdata23andme
fam001 NG171210431
fam001 NG171210432
fam001 NG171210433
tsc_7_5_s5_v13
5_s5
5_s5 genome
trio_parsed_vcf15_03359procol_vcf_report overall_15_03359procol_R1_converted_Unique_Output.pjt
trio_parsed_vcf15_03359procol_vcf_report 15_06810matcol
trio_parsed_vcf15_03359procol_vcf_report 15_06811patcol
na12878 recessive
ex-15004
fpd-aix-mes-312-12
fpd-alg-mad-1230-3
jg31048rm_filtered-jrmeena-copy 117543
5517_sorted_hg19
example_snp
er-447_an6 ann hg38_multianno_umd
na12878 compound_heterozygous
552117_ngs_ex
552017_ngs_ex
552217_ngs_ex
annotation final
552217_ngs_ex annotated mendelmd
miller
abdullah_h_mahmood_ngs_032_17 ionxpress_011 r_2017_11_03_08_01_58_user_s5-0138-35-copy_of_ngs_032_17_aip_48_ornek_2
mm180101la
mm180104ea
mm180106mm
mm180110lp
mm180111m
mm180112f
1_s1 genome
1_s1
1_s1
2_s2
3_s3
4_s4
hboc12
10049_haplotypecaller_target
hgcat_input_example-3
child2_indexed
ptc-wgs combined vep gnomad
dels
d233
cpt10
33011510240923_annotated
amal-report-2
073_tsvc_variants
046_tsvc_variants
045_tsvc_variants
044_tsvc_variants
043_tsvc_variants
042_tsvc_variants
033_tsvc_variants
031_tsvc_variants
030_tsvc_variants
sm006-1 both
sm007-1 both
sm008-1 both
55001703319634a raw
01pjhc5_s1_l001_r0trimunpaired_cut_fastqc
01pex6c4_s1_indel_filter_end
mm180211ms
aml-1726_v1_non-filtered_2017-02-26_03_51_07
gt_so_4086_igt_1r
index13_otb1697_gerard goyette_500-049a_human_hex_av5-utr_50x_03232016 deduplicated realigned recalibrated snpeff snpsift
index9_otb1693_gerard goyette_500-049a_human_hex_av5-utr_50x_03232016 deduplicated realigned recalibrated snpeff snpsift
index34_otb3338_gerard goyette_500-049a-2_human_hex_av5-utr_50x_06112016 deduplicated realigned recalibrated snpeff snpsift
18063
21_s21
nist_integratedcalls_12datasets_130517_hethomvarpass_vqsrv2 15
21_s21 genome
gfg_filtered_unphased_genotypes_vcf
schinzel_giedion
432 varscan snp snpann
mng17-30918-p-lin003-patient-0001-e9504_mutation_report1
n2_s17
tsvc_variants_ionxpress_001
tsvc_variants_ionxpress_004
lanjinglingc2017103103501 mkdup sorted genotypegvcf
mmg003343
hodakb10_snp_indel_anno
hodakb12_snp_indel_anno
hodakt10_snp_indel_anno
hodakt12_snp_indel_anno
patient ann filtered
62334902_s25-161111_k00359_0038_bhg532bbxx-normal-illuwes-4f0ca40f-mvar
62334902_s25-161111_k00359_0038_bhg532bbxx-normal-illuwes-4f0ca40f-mvar
mp91583 both
ancestrydna
el-exome_s1
tsvc_variants_ionxpress_001-5225
9040 snpeff high
9040 cleaned_snpindel
9040 snpeff moderate
ex_013_mod
94533-0209701724_ms_onbait
promethease-1
71161510240931_annotated-4
hsp116-ii-1-filtered_variants
annovar hg19_multianno_pass
miller snpeff
s308
s315_9
248419675_annotated
test
variants
tsvc_variants_ionxpress_002-4
tsvc_variants_ionxpress_002-4
annotation final
ex
ex-sf
tsvc_variants_ionxpress_040
ap253-3 final
aaa
acacia
filtered
scz009_trimmed samtools
dnl109758_dez imputed
output 09_chr1 fa filtered3
45655-cr-ensemble
galaxy103-varscan_on_data_102
test
m1_rms1_10
m1_rms1_1
m1_rms1_11
m1_rms1_12
m1_rms1_14
m1_rms1_15
m1_rms1_13
m1_rms1_16
m1_rms1_17
m1_rms1_18
m1_rms1_19
m1_rms1_3
m1_rms1_2
m1_rms1_5
m1_rms1_4
m1_rms1_6
m1_rms1_7
m1_rms1_8
m1_rms1_9
mm180725at
mm180706dm
img-20181008-wa0006
tcga-bf-a1pu-01a-11d-a19a-08
pbrpl18h2_-_sravanthi_filtered_2018-09-27_04_08_32
breast1 1
sample1
mo-mi-abdi1130 final
u697_bwa_picard
164649418_s1 ann select dbsnp
na12877-rep1_s1
na12877-rep1_s1
f txt
f
2-fl-ha_482-01
miller
ctr0100487_mex076_alain_mancinas_201814015100_pass
bra19324freebayes
traning-sample-vcf-file
lapatrada pol indel
22603_s43
22603_s55
ns1-6
ns1-5 final
ns2-5 filtered variants
ns2-10 final
ns4-4
ns4-5
ns4-6
sama-karam_s1
copy-of-pof-ii-1-filtered-snps-indels-query output genome_summary
hsp108-ii-1-filtered_variants
2636_s28
2761_s29
4450_s11
6306_s1
6343_s27
6422_s23
6424_s25
6426_s21
12016_s26
12030_s5
12061_s9
12066_s20
12067_s13
12068_s19
12078_s17
12083_s14
12086_s22
12092_s33
12107_s6
16420_s8
16431_s7
16441_s18
17503_s31
17507_s32
2632_s12
sy-51_s2
sy-52_s3
2632_s12
2632_s12
jp5186_chip
32
na12878 dominant
miller
filtered_merged_a00k
rm-274 final
pm-286 final
diu946-001_results_diu946-001 final
shr
genome_jeffrey_bloom_v5_full_20190110052330
genome_jeffrey_bloom_v5_full_20190110052330
ht12d final
gatk f008 reheader
father
sec-2-18-7_filtered
sample_file
wanguard_s1
cdh6-52
full_combined_excel
miller
my var-final
62455815_s29 mvar
tsvc_variants_ionxpress_002
59876-as-ensemble
59876-as-ensemble
rf3717
56001801068581a snp
56001801066395a snp
56001801066395a indel
fmsd_filtered_snp_indel
180919fr-013-1
tsvc_variants_ioncode_0249
37-g0191 raw_variants
mr
mr
wes 6160 filtered recode
1886106_bak chr20
genome_susan_abernathy_v4_full_20190218171918
drift-nimh_freeze2_brmenn
9etks0122_annotation
17on508_ioncode_0113
a-full_variant_table
gm12878
hd829_190221_nb551050_0207_ahvwygbgx9 germline
solo_-a-star-wars-story-trailer
ctr0100514_mex083_jonathan_resendiz_20190502090400_pass
ctr0100502_mex079_amisaday_mora_20190330015800
200567_mutation_report1_filtered
qmul_trio_lof_assignment_2019
sample_hardfiltered
trio2 snpeff canon annotated exons dhg21091-v
trio2 snpeff canon annotated exons dhg21610-v
trio2 snpeff canon annotated exons dhg21611-v
8wkyncwo
8wkyncwo
mm160117hb v200
skaz004 gatk snp
porto_final_annot intervar_annovar
53586-full_variant_table
53586-full_variant_table
dna-data-2019-03-03
60820188484921_wgz snp-4
gi-variants-passed-homoz
wes_0012 hg38
rcl1126
wt108005 snp
wt108005fu0 snp
wt108005mu0 snp
mm190528hvp
mm190623opd
myexome
54871510242650_annotated-2
aghdas_dehghani qualified
plink
filtered4
filtered2
filtered5
filtered6
mpileup-final_calls_arg_046
111
p001_fim
xah
2_s2
kemikp79
h8m mutect2
001 final
60820188472738 snp
allsamples as snp_indel_pass_annotated
h7 indel_final
h11 snp_final
ashwath_ramji_slb567__wes_annotated_vcf
60820188484090 snp
56001808052608_wgz sv
f7
