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EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

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VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 18
Number of Genes: 1

Export to: CSV
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CDK5RAP3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View udp2568_axeq_1_hs37d5_remdup-uniqmap 17 rs2905846
dbSNP Clinvar
46048592 186.0 A G . 1/1 0 MOTIF[MA0062.2:Gabp] LOW 0.69149 0.69150 0.30004 0.00 None None None None None None CDK5RAP3|0.244591627|32.06%
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View udp2568_axeq_1_hs37d5_remdup-uniqmap 17 rs6502330
dbSNP Clinvar
13972811 27.0 G A . 1/1 0 MOTIF[MA0062.2:Gabp] MODIFIER 0.99561 0.99560 None None None None None None None
View udp2568_axeq_1_hs37d5_remdup-uniqmap 11 rs72850544
dbSNP Clinvar
9336093 38.0 C T . 0/1 0 MOTIF[MA0062.2:Gabp] LOW 0.07668 0.07668 None None None None None None TMEM41B|0.338883449|24.91%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 5 rs2305725
dbSNP Clinvar
167913459 222.0 C A . 1/1 0 MOTIF[MA0062.2:Gabp] LOW 0.07428 0.07428 0.12460 None None None None None None RARS|0.932338874|2.73%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 17 rs2644712
dbSNP Clinvar
767396 87.0 G C . 0/1 0 MOTIF[MA0062.2:Gabp] MODIFIER None None None None None None NXN|0.594772524|11.95%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 17 rs2644711
dbSNP Clinvar
767395 64.0 G A . 0/1 0 MOTIF[MA0062.2:Gabp] MODIFIER None None None None None None NXN|0.594772524|11.95%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 7 rs1882655
dbSNP Clinvar
66147057 222.0 T C . 1/1 0 MOTIF[MA0062.2:Gabp] MODIFIER 0.86681 0.86680 None None None None None None KCTD7|0.214101234|35.12%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 6 rs9295043
dbSNP Clinvar
168476583 13.0 A G . 1/1 0 MOTIF[MA0062.2:Gabp] MODIFIER None None None None None None FRMD1|0.001331661|93.69%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 20 rs3746792
dbSNP Clinvar
389456 57.0 C T . 0/1 0 MOTIF[MA0062.2:Gabp] LOW 0.40415 0.40420 0.45403 None None None None None None RBCK1|0.095045325|52.09%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 19 . 58920104 53.5 AC... AC... . 0/1 0 MOTIF[MA0062.2:Gabp] LOW None None None None None None ZNF584|0.001865527|91.37%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 19 rs45528635
dbSNP Clinvar
16653249 116.0 G A . 0/1 0 MOTIF[MA0062.2:Gabp] LOW 0.09026 0.09026 None None None None None None CHERP|0.091471608|52.95%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 17 rs74504320
dbSNP Clinvar
6554921 35.0 A G . 0/1 0 MOTIF[MA0062.2:Gabp] MODIFIER 0.04812 0.04812 0.09001 None None None None None None MED31|0.581573659|12.49%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 14 rs17552038
dbSNP Clinvar
74416945 107.0 G C . 0/1 0 MOTIF[MA0062.2:Gabp] LOW 0.09764 0.09764 None None None None None None FAM161B|0.032647327|68.31%,COQ6|0.155475963|42.22%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 14 rs1056879
dbSNP Clinvar
35591174 109.0 T C . 0/1 0 MOTIF[MA0062.2:Gabp] LOW 0.40635 0.40630 0.38052 None None None None None None PPP2R3C|0.414536753|19.89%,KIAA0391|0.115015231|48.33%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 12 . 50898902 9.52 G C . 0/1 0 MOTIF[MA0062.2:Gabp] MODIFIER None None None None None None DIP2B|0.298176255|27.8%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 10 rs2244396
dbSNP Clinvar
43932479 91.0 A G . 1/1 0 MOTIF[MA0062.2:Gabp] MODIFIER 0.99601 0.99600 None None None None None None ZNF487|0.002066386|90.81%
View udp2568_axeq_1_hs37d5_remdup-uniqmap 4 rs2272745
dbSNP Clinvar
4249974 225.0 C A . 0/1 0 MOTIF[MA0062.2:Gabp] LOW 0.46126 0.46130 None None None None None None None
View udp2568_axeq_1_hs37d5_remdup-uniqmap 2 . 9983591 214.0 AG AGG . 1/1 0 MOTIF[MA0062.2:Gabp] LOW None None None None None None TAF1B|0.089989195|53.23%
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