SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

PTPN14,
PTPN14 Choanal atresia and lymphedema, 613611 (3)

Genes at Clinical Genomics Database

PTPN14,
PTPN14 Choanal atresia and lymphedema

Genes at HGMD

Summary

Number of Variants: 4
Number of Genes: 1

Export to: CSV
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PTPN14

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View hht25 1 rs55801232
dbSNP Clinvar
214576241 200.0 T C . 0/1 77 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.00998 0.00998 0.02445 0.46 1.00 None None None None None None PTPN14|0.27893907|29.21%
View hht25 1 rs7550799
dbSNP Clinvar
214564340 200.0 T C . 1/1 102 SYNONYMOUS_CODING LOW SILENT 0.78634 0.78630 0.16077 None None None None None None PTPN14|0.27893907|29.21%
View hht25 1 rs1135352
dbSNP Clinvar
214542819 200.0 T C . 1/1 66 SYNONYMOUS_CODING LOW SILENT 0.78395 0.78390 0.17331 None None None None None None PTPN14|0.27893907|29.21%
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View hht25 1 rs11580603
dbSNP Clinvar
214571251 200.0 A C . 0/1 78 None None None 0.35044 0.35040 0.37106 None None None None None None PTPN14|0.27893907|29.21%
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