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VARIANT EFFECT	FUNCTIONAL CLASS	IMPACT
MUTATION TYPE:	CHR: POS:

DBSNP BUILD: EXCLUDE VARIANTS AT VARISNP	READ DEPTH: QUAL:	VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD SHOW ONLY VARIANTS PRESENT AT HGMD

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+ Genes 2

Genes:
APOL1, MYH9,

+ Genes associated with diseases 2

Genes at Omim

APOL1, MYH9,

APOL1	{End-stage renal disease, nondiabetic, susceptibility to}, 612551 (3) {Glomerulosclerosis, focal segmental, 4, susceptibility to}, 612551 (3)
MYH9	Deafness, autosomal dominant 17, 603622 (3) Macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss, 155100 (3)

Genes at Clinical Genomics Database

MYH9,

MYH9	Sebastian syndrome May-Hegglin anomaly Fechtner syndrome Epstein syndrome Macrothrombocytopenia and progressive sensorineural deafness

Genes at HGMD

Summary

Number of Variants: 91
Number of Genes: 2

Export to: CSV

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Page 1 of 1

APOL1
Omim - GeneCards - NCBI
	Options	Individual	Chr	RsId	Pos	Qual	Ref	Alt	Filter	Gen	Read Depth	Effect	Impact	Func Class	1kgenomes	dbSNP	ESP6500	Sift	PP2	CADD	M-CAP	CLINVAR	HI Score
	View	sample_hardfiltered	22	rs136174 dbSNP Clinvar	36661536	3197.05	C	A	PASS	1/1	97	SYNONYMOUS_CODING	LOW	SILENT	0.86422	0.86420	0.15324				None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs2239785 dbSNP Clinvar	36661330	2845.77	G	A	PASS	1/1	95	NON_SYNONYMOUS_CODING	MODERATE	MISSENSE	0.67812	0.67810	0.34715	0.16	0.78		None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136177 dbSNP Clinvar	36661842	3367.77	G	A	PASS	1/1	106	SYNONYMOUS_CODING	LOW	SILENT	0.85324	0.85320	0.16023				None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136176 dbSNP Clinvar	36661646	4070.77	G	A	PASS	1/1	130	NON_SYNONYMOUS_CODING	MODERATE	MISSENSE	0.86262	0.86260	0.15101	1.00	0.00		None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136175 dbSNP Clinvar	36661566	3375.77	G	A	PASS	1/1	109	NON_SYNONYMOUS_CODING	MODERATE	MISSENSE	0.86422	0.86420	0.15308	0.04	0.00		None None	None None None None	APOL1\|0.000329557\|99.31%
MYH9
Omim - GeneCards - NCBI
	Options	Individual	Chr	RsId	Pos	Qual	Ref	Alt	Filter	Gen	Read Depth	Effect	Impact	Func Class	1kgenomes	dbSNP	ESP6500	Sift	PP2	CADD	M-CAP	CLINVAR	HI Score
	View	sample_hardfiltered	22	rs710181 dbSNP Clinvar	36691607	1387.77	A	C	PASS	1/1	45	SYNONYMOUS_CODING	LOW	SILENT	0.98263	0.98260	0.02876				None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2269530 dbSNP Clinvar	36684358	2265.77	C	A	ReadPosRankSumTest	0/1	102	SYNONYMOUS_CODING	LOW	SILENT	0.29373	0.29370	0.15516				None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2269529 dbSNP Clinvar	36684354	2234.77	T	C	ReadPosRankSumTest	0/1	100	NON_SYNONYMOUS_CODING	MODERATE	MISSENSE	0.29413	0.29410	0.15554	0.34	0.04		None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs559841300 dbSNP Clinvar	36716390	1259.77	G	A	ReadPosRankSumTest	0/1	95	NON_SYNONYMOUS_CODING	MODERATE	MISSENSE	0.00040	0.00040		0.13	0.19		None None	None None None None	MYH9\|0.668562251\|9.42%
Omim - GeneCards - NCBI
	Options	Individual	Chr	RsId	Pos	Qual	Ref	Alt	Filter	Gen	Read Depth	Effect	Impact	Func Class	1kgenomes	dbSNP	ESP6500	Sift	PP2	CADD	M-CAP	CLINVAR	HI Score
	View	sample_hardfiltered	22	rs112629005 dbSNP Clinvar	36717001	90.73	A	AT	PASS	0/1	36	None	None	None							None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs1002246 dbSNP Clinvar	36714659	81.28	G	A	PASS	1/1	3	None	None	None	0.53954	0.53950					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs1557539 dbSNP Clinvar	36714089	258.78	C	G	PASS	1/1	8	None	None	None	0.98902	0.98900					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs1003366 dbSNP Clinvar	36713020	322.77	C	T	PASS	1/1	10	None	None	None	0.96386	0.96390					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs545845640 dbSNP Clinvar	36712839	124.73	GA	G	QualByDepth	0/1	120	None	None	None							None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs5756152 dbSNP Clinvar	36712472	4831.77	A	G	PASS	1/1	154	None	None	None	0.90196	0.90200					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	.	36712400	104.73	G	GA	PASS	0/1	46	None	None	None							None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs3752461 dbSNP Clinvar	36710045	311.77	C	T	ReadPosRankSumTest	0/1	25	None	None	None	0.30731	0.30730					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs5750250 dbSNP Clinvar	36708483	34.74	G	A	PASS	1/1	2	None	None	None	0.80931	0.80930					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2413396 dbSNP Clinvar	36708084	2645.77	C	T	PASS	1/1	90	None	None	None	0.76078	0.76080	0.24450				None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs3842715 dbSNP Clinvar	36708049	1191.73	CT...	C	PASS	0/1	70	None	None	None	0.30112	0.30110					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs1557529 dbSNP Clinvar	36705529	1225.77	A	G	PASS	1/1	39	None	None	None	0.87081	0.87080					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs5845266,rs869286924,rs397966832 dbSNP Clinvar	36705141	70.25	A	AG	PASS	1/1	3	None	None	None	1.00000	1.00000					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs5750248 dbSNP Clinvar	36702892	800.77	T	C	PASS	1/1	26	None	None	None	0.80312	0.80310					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs1009150 dbSNP Clinvar	36702300	73.77	C	T	ReadPosRankSumTest	0/1	17	None	None	None	0.43151	0.43150					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2009940 dbSNP Clinvar	36699498	21.77	A	G	LowQual	1/1	2	None	None	None	0.98562	0.98560					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs1007953 dbSNP Clinvar	36699055	115.9	T	C	PASS	1/1	5	None	None	None	0.99940	0.99940					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2239787 dbSNP Clinvar	36698992	168.77	C	A	ReadPosRankSumTest	0/1	16	None	None	None	0.04453	0.04453					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs4821481 dbSNP Clinvar	36695942	54.74	C	T	PASS	1/1	2	None	None	None	0.77975	0.77980					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2032487 dbSNP Clinvar	36695428	21.77	C	T	LowQual	1/1	2	None	None	None	0.77915	0.77920					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs4821480 dbSNP Clinvar	36695247	507.77	G	T	PASS	1/1	15	None	None	None	0.77995	0.78000					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2187776 dbSNP Clinvar	36695173	1151.77	C	T	PASS	1/1	38	None	None	None	0.88259	0.88260					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs16996650 dbSNP Clinvar	36695123	602.77	G	C	ReadPosRankSumTest	0/1	60	None	None	None	0.05252	0.05252	0.02607				None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs41279999 dbSNP Clinvar	36694954	788.77	C	G	ReadPosRankSumTest	0/1	63	None	None	None	0.05252	0.05252	0.02614				None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2239786 dbSNP Clinvar	36691927	197.77	G	C	ReadPosRankSumTest	0/1	9	None	None	None	0.15236	0.15240					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs3833921,rs397840897 dbSNP Clinvar	36691387	35.73	TAG	T	PASS	0/1	4	None	None	None	0.04932	0.04932					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2071730 dbSNP Clinvar	36690026	4451.77	G	C	ReadPosRankSumTest	0/1	379	None	None	None	0.68470	0.68470					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2285111 dbSNP Clinvar	36687912	253.77	C	T	ReadPosRankSumTest	0/1	18	None	None	None	0.05252	0.05252					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs75883300 dbSNP Clinvar	36685483	1726.77	C	T	ReadPosRankSumTest	0/1	109	None	None	None	0.05252	0.05252					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs5756129 dbSNP Clinvar	36684092	113.78	T	C	ReadPosRankSumTest	0/1	5	None	None	None	0.39197	0.39200					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2071733 dbSNP Clinvar	36680825	157.77	C	G	ReadPosRankSumTest	0/1	11	None	None	None	0.64756	0.64760					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs735854 dbSNP Clinvar	36679058	916.77	T	C	PASS	1/1	28	None	None	None	0.52955	0.52960					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs11703176 dbSNP Clinvar	36678476	427.77	C	A	PASS	1/1	12	None	None	None	0.36621	0.36620					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs11089787 dbSNP Clinvar	36678453	360.77	C	G	PASS	1/1	11	None	None	None	0.38778	0.38780					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs12107 dbSNP Clinvar	36677982	49.74	G	A	PASS	1/1	2	None	None	None	0.29513	0.29510					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2481 dbSNP Clinvar	36677400	421.77	G	A	PASS	1/1	15	None	None	None	0.29533	0.29530					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs3886200 dbSNP Clinvar	36663627	2773.77	C	T	PASS	1/1	92	None	None	None	0.59764	0.59760					None None	None None None None	None
	View	sample_hardfiltered	22	rs78523 dbSNP Clinvar	36663248	685.77	A	G	PASS	1/1	22	None	None	None	0.87480	0.87480					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs576493992 dbSNP Clinvar	36662141	13.91	CT	C	LowQual;QualByDepth	0/1	44	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs28480494 dbSNP Clinvar	36661152	1567.77	G	A	PASS	1/1	36	None	None	None	0.86102	0.86100	0.15080				None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136169 dbSNP Clinvar	36661149	1567.77	A	G	PASS	1/1	36	None	None	None	0.86382	0.86380	0.15080				None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs28391521 dbSNP Clinvar	36661061	502.77	A	G	PASS	1/1	14	None	None	None	0.87001	0.87000					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs78469 dbSNP Clinvar	36659188	60.28	G	T	PASS	1/1	3	None	None	None	0.59026	0.59030					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs713753 dbSNP Clinvar	36658534	61.28	C	T	PASS	1/1	3	None	None	None	0.54273	0.54270					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136164 dbSNP Clinvar	36657789	2561.77	T	C	PASS	1/1	83	None	None	None	0.66514	0.66510	0.41965				None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136163 dbSNP Clinvar	36657628	3073.77	T	G	PASS	1/1	101	None	None	None	0.86382	0.86380	0.15193				None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs713929 dbSNP Clinvar	36657596	2292.77	A	G	PASS	1/1	77	None	None	None	0.86402	0.86400	0.14855				None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136162 dbSNP Clinvar	36657474	673.77	A	G	PASS	1/1	21	None	None	None	0.00779	0.00779					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136161 dbSNP Clinvar	36657432	425.77	G	C	PASS	1/1	12	None	None	None	0.55611	0.55610					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136153 dbSNP Clinvar	36655513	321.78	C	T	PASS	1/1	9	None	None	None	0.69229	0.69230					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136152 dbSNP Clinvar	36655261	164.9	C	T	PASS	1/1	5	None	None	None	0.99980	0.99980					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136151 dbSNP Clinvar	36655012	291.78	A	G	ReadPosRankSumTest	0/1	13	None	None	None	0.84365	0.84370					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136148 dbSNP Clinvar	36652931	249.8	C	T	PASS	1/1	7	None	None	None	0.76677	0.76680					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs136147 dbSNP Clinvar	36652889	91.28	G	T	PASS	1/1	3	None	None	None	0.58906	0.58910					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs71314975 dbSNP Clinvar	36651621	52.74	A	G	RMSMapping	1/1	2	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs199777630 dbSNP Clinvar	36651608	62.74	T	G	RMSMapping	1/1	2	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs201629159 dbSNP Clinvar	36651606	62.74	A	G	RMSMapping	1/1	2	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs200686414 dbSNP Clinvar	36651536	211.77	C	T	ReadPosRankSumTest	0/1	9	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs35156917 dbSNP Clinvar	36651528	331.77	G	C	ReadPosRankSumTest	0/1	13	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs35665896 dbSNP Clinvar	36651508	441.77	T	C	ReadPosRankSumTest	0/1	20	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs200194034 dbSNP Clinvar	36651481	900.77	C	G	ReadPosRankSumTest	0/1	35	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs199528719 dbSNP Clinvar	36651476	929.77	G	C	ReadPosRankSumTest	0/1	40	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs201512283 dbSNP Clinvar	36651452	982.77	A	G	ReadPosRankSumTest	0/1	49	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs5756118 dbSNP Clinvar	36651365	1141.77	A	G	ReadPosRankSumTest	0/1	67	None	None	None	0.42712	0.42710					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs773047893 dbSNP Clinvar	36651356	1128.73	GCT	G	PASS	0/1	63	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs370604654 dbSNP Clinvar	36651352	1038.77	A	C	ReadPosRankSumTest	0/1	63	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs376451192 dbSNP Clinvar	36651343	970.77	A	G	ReadPosRankSumTest	0/1	62	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs375488878 dbSNP Clinvar	36651340	900.77	G	T	ReadPosRankSumTest	0/1	62	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs370294636 dbSNP Clinvar	36651333	855.77	T	C	ReadPosRankSumTest	0/1	63	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	.	36651325	688.77	C	A	ReadPosRankSumTest	0/1	60	None	None	None							None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs543736531 dbSNP Clinvar	36651313	315.77	A	T	ReadPosRankSumTest	0/1	59	None	None	None	0.02256	0.02256					None None	None None None None	APOL1\|0.000329557\|99.31%
	View	sample_hardfiltered	22	rs132735 dbSNP Clinvar	36597881	196.9	G	T	PASS	1/1	5	None	None	None	0.49900	0.49900					None None	None None None None	APOL4\|0.000586223\|97.99%
	View	sample_hardfiltered	22	.	36771317	21.77	T	A	LowQual	1/1	2	None	None	None							None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs132734 dbSNP Clinvar	36597877	196.9	G	A	PASS	1/1	5	None	None	None	0.61442	0.61440					None None	None None None None	APOL4\|0.000586223\|97.99%
	View	sample_hardfiltered	22	rs1883275 dbSNP Clinvar	36769823	21.77	G	A	LowQual	1/1	2	None	None	None	0.99022	0.99020					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	.	36751001	53.7	A	AA...	PASS	1/1	2	None	None	None							None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs56147525,rs548467551,rs59298528 dbSNP Clinvar	36744886	126.73	GC	G	PASS	0/1	16	None	None	None							None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs739095 dbSNP Clinvar	36731412	152.84	A	G	PASS	1/1	6	None	None	None	0.98642	0.98640					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs8136336 dbSNP Clinvar	36722534	1367.77	G	A	PASS	1/1	40	None	None	None	0.98423	0.98420					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs8136069 dbSNP Clinvar	36722490	468.77	C	A	PASS	1/1	14	None	None	None	0.44589	0.44590					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2071731 dbSNP Clinvar	36718858	88.28	G	A	PASS	1/1	3	None	None	None	0.44189	0.44190					None None	None None None None	MYH9\|0.668562251\|9.42%
	View	sample_hardfiltered	22	rs2269532 dbSNP Clinvar	36718039	356.77	G	A	PASS	1/1	10	None	None	None	0.39736	0.39740					None None	None None None None	MYH9\|0.668562251\|9.42%

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Summary

APOL1

MYH9

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