SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

CEACAM16, COG2,
CEACAM16 Deafness, autosomal dominant 4B, 614614 (3)
COG2 ?Congenital disorder of glycosylation, type IIq, 617395 (3)

Genes at Clinical Genomics Database

CEACAM16,
CEACAM16 Deafness, autosomal dominant 4B

Genes at HGMD

Summary

Number of Variants: 9
Number of Genes: 9

Export to: CSV
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A4GNT

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 3 rs2170309
dbSNP Clinvar
137843106 329.21 T C PASS 1|1 7 SYNONYMOUS_STOP LOW None 0.65415 0.65420 0.33931 None None None None None None A4GNT|0.020635171|73.87%

C17orf72

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 17 rs11079520
dbSNP Clinvar
62079334 1305.16 A G PASS 1|0 43 SYNONYMOUS_STOP LOW None 0.24820 0.24820 None None None None None None PRR29|0.003440848|87.87%

CABS1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 4 rs13039
dbSNP Clinvar
71201943 597.16 A G PASS 0|1 22 SYNONYMOUS_STOP LOW None 0.19788 0.19790 0.16933 None None None None None None CABS1|0.003869686|87.19%

CEACAM16

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 19 rs146757817
dbSNP Clinvar
45213778 459.13 A G PASS 0|1 68 SYNONYMOUS_STOP LOW None 0.00919 0.00919 0.01319 None None None None None None CEACAM16|0.066749187|58.2%

COG2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 1 rs1051038
dbSNP Clinvar
230829139 763.16 A G PASS 1|0 28 SYNONYMOUS_STOP LOW None 0.34465 0.34460 0.21359 None None None None None None COG2|0.130135468|45.85%

DAD1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 14 rs1051154
dbSNP Clinvar
23044004 1429.92 C T PASS 0/1 37 SYNONYMOUS_STOP LOW None 0.09185 0.09185 0.10741 None None None None None None DAD1|0.762075801|6.8%

HDAC7

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 12 rs7306788
dbSNP Clinvar
48177906 1918.16 C T PASS 1|0 89 SYNONYMOUS_STOP LOW None 0.07149 0.07149 0.13901 None None None None None None HDAC7|0.157662345|41.92%

KCNJ12

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 17 rs76506689
dbSNP Clinvar
21319955 777.92 G A PASS 0/1 54 SYNONYMOUS_STOP LOW None None None None None None None KCNJ12|0.437556296|18.82%

NBPF9

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father 1 rs78667364
dbSNP Clinvar
144828784 815.92 A G HARD_TO_VALIDATE 0/1 150 SYNONYMOUS_STOP LOW None None None None None None None NBPF9|0.001397166|93.36%
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