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VARIANT EFFECT FUNCTIONAL CLASS IMPACT
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EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

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CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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Genes at Omim

ATP5A1, MRPS7,
ATP5A1 ?Combined oxidative phosphorylation deficiency 22, 616045 (3)
?Mitochondrial complex V (ATP synthase) deficiency, nuclear type 4, 615228 (3)
MRPS7 ?Combined oxidative phosphorylation deficiency 34, 617872 (3)

Genes at Clinical Genomics Database

ATP5A1,
ATP5A1 Combined oxidative phosphorylation deficiency 22
Mitochondrial complex V (ATP synthase) deficiency, nuclear type 4

Genes at HGMD

Summary

Number of Variants: 18
Number of Genes: 2

Export to: CSV
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ATP5A1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_95.variant40 18 rs56181324
dbSNP Clinvar
43678024 872.37 G A PASS 0/1 28 MOTIF[MA0095.1:Yy1] LOW None 0.23882 0.23880 None None None None None None ATP5A1|0.559577689|13.38%

MRPS7

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_95.variant40 17 rs8075276
dbSNP Clinvar
73257986 6461.15 C T PASS 0/1 206 MOTIF[MA0095.1:Yy1] LOW None 0.65735 0.65730 0.34005 0.00 1.00 None None None None None None GGA3|0.125773495|46.52%,MRPS7|0.30443526|27.34%
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_95.variant40 6 rs3094614
dbSNP Clinvar
30181275 417.52 A G PASS 0/1 57 MOTIF[MA0095.1:Yy1] LOW None 0.39756 0.39760 None None None None None None None
View combined sample_95.variant40 8 rs13261590
dbSNP Clinvar
123793984 236.99 T C PASS 1/1 31 MOTIF[MA0095.1:Yy1] MODIFIER None 0.88339 0.88340 None None None None None None ZHX2|0.985755188|1.26%
View combined sample_95.variant40 2 rs41285977
dbSNP Clinvar
73461553 1410.6 C T PASS 0/1 140 MOTIF[MA0095.1:Yy1] LOW None 0.03654 0.03654 0.05770 None None None None None None CCT7|0.514685663|15.17%
View combined sample_95.variant40 20 rs2072961
dbSNP Clinvar
1099666 1490.33 G C PASS 0/1 51 MOTIF[MA0095.1:Yy1] LOW None 0.73003 0.73000 None None None None None None PSMF1|0.201334889|36.61%
View combined sample_95.variant40 X rs55914635
dbSNP Clinvar
102470553 1047.78 C G PASS 1/1 44 MOTIF[MA0095.1:Yy1] MODIFIER None 0.17536 0.17540 None None None None None None BEX4|0.007503312|83.06%
View combined sample_95.variant40 17 rs4788868
dbSNP Clinvar
73127971 1206.6 A T PASS 1/1 60 MOTIF[MA0095.1:Yy1] MODIFIER None 0.99760 0.99760 None None None None None None None
View combined sample_95.variant40 11 rs907611
dbSNP Clinvar
1874072 43.52 G A PASS 0/1 10 MOTIF[MA0095.1:Yy1] LOW None 0.23223 0.23220 None None None None None None None
View combined sample_95.variant40 21 rs772357297
dbSNP Clinvar
11098685 2671.12 CT... C PASS 0/1 793 MOTIF[MA0095.1:Yy1] LOW None None None None None None None None
View combined sample_95.variant40 14 rs4982710
dbSNP Clinvar
23398902 115.68 C T PASS 1/1 12 MOTIF[MA0095.1:Yy1] LOW None 0.63199 0.63200 None None None None None None None
View combined sample_95.variant40 15 rs4374117
dbSNP Clinvar
63340647 2247.68 A G PASS 1/1 47 MOTIF[MA0095.1:Yy1] LOW None 0.99361 0.99360 None None None None None None TPM1|0.978525529|1.5%
View combined sample_95.variant40 16 rs42139
dbSNP Clinvar
21531609 5046.88 C T PASS 0/1 379 MOTIF[MA0095.1:Yy1] LOW None None None None None None None None
View combined sample_95.variant40 17 rs3785793
dbSNP Clinvar
6659324 1004.8 A G PASS 0/1 67 MOTIF[MA0095.1:Yy1] LOW None 0.60723 0.60720 0.46343 None None None None None None XAF1|0.002684279|89.28%
View combined sample_95.variant40 19 rs7260578
dbSNP Clinvar
5910095 832.02 G A PASS 0/1 103 MOTIF[MA0095.1:Yy1] LOW None 0.56310 0.56310 None None None None None None VMAC|0.011245463|79.85%
View combined sample_95.variant40 19 rs76211352
dbSNP Clinvar
12886478 35.96 G A PASS 0/1 5 MOTIF[MA0095.1:Yy1] LOW None 0.02456 0.02456 None None None None None None HOOK2|0.048125387|63.28%
View combined sample_95.variant40 1 rs61776584
dbSNP Clinvar
26438455 758.65 T C PASS 0/1 65 MOTIF[MA0095.1:Yy1] LOW None 0.21426 0.21430 None None None None None None PDIK1L|0.785073671|6.22%
View combined sample_95.variant40 20 rs60461814
dbSNP Clinvar
62887012 115.55 C T PASS 0/1 45 MOTIF[MA0095.1:Yy1] LOW None 0.14058 0.14060 None None None None None None None
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