+ Filter Options

SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
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+ Genes 2

Genes:
PCDH11Y, SLC9B1P1,

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 153
Number of Genes: 2

Export to: CSV

PCDH11Y
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_95.variant40 Y rs2524543
dbSNP Clinvar 		4968368 938.86 G T PASS 1/1 29 NON_SYNONYMOUS_CODING MODERATE None 0.47073 1.00 0.00 None None None None None None PCDH11Y|0.030798406|69.05%
View combined sample_95.variant40 Y rs2563389
dbSNP Clinvar 		4968655 1260.89 T G PASS 1/1 43 NON_SYNONYMOUS_CODING MODERATE None 0.34057 1.00 0.00 None None None None None None PCDH11Y|0.030798406|69.05%

SLC9B1P1
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_95.variant40 Y rs373109292
dbSNP Clinvar 		13500658 123.07 T A PASS 0/1 45 STOP_GAINED HIGH None None None None None None None SLC9B1P1|0.002112226|90.7%
View combined sample_95.variant40 Y rs373363143
dbSNP Clinvar 		13524639 46.41 C T PASS 0/1 65 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View combined sample_95.variant40 Y rs78220120
dbSNP Clinvar 		13524664 94.73 C A PASS 0/1 56 NON_SYNONYMOUS_CODING MODERATE None 0.02 1.00 None None None None None None SLC9B1P1|0.002112226|90.7%
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_95.variant40 Y . 13488265 46.56 G A PASS 0/1 25 None None None None None None None None None None
View combined sample_95.variant40 Y rs78270074
dbSNP Clinvar 		13488267 439.54 A G,T PASS 0/1 25 None None None None None None None None None None
View combined sample_95.variant40 Y rs113369311
dbSNP Clinvar 		13488272 298.52 G A PASS 0/1 27 None None None None None None None None None None
View combined sample_95.variant40 Y rs78769643
dbSNP Clinvar 		13488278 649.17 C A,T PASS 0/2 26 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488280 256.51 C T PASS 0/1 28 None None None None None None None None None None
View combined sample_95.variant40 Y rs995833949
dbSNP Clinvar 		13488293 37.53 G A PASS 0/1 30 None None None None None None None None None None
View combined sample_95.variant40 Y rs80326224
dbSNP Clinvar 		13488299 169.68 G A,T PASS 0/1 31 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488303 382.48 C T,A PASS 0/1 31 None None None None None None None None None None
View combined sample_95.variant40 Y rs79720360
dbSNP Clinvar 		13488306 169.68 G C,T PASS 0/2 25 None None None None None None None None None None
View combined sample_95.variant40 Y rs112703999
dbSNP Clinvar 		13489524 175.7 G A PASS 0/1 25 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489527 91.72 C G,T,A PASS 0/1 19 None None None None None None None None None None
View combined sample_95.variant40 Y rs376970508
dbSNP Clinvar 		13489528 181.72 C A,G PASS 2/1 21 None None None None None None None None None None
View combined sample_95.variant40 Y . 13310500 707.72 G A PASS 0/1 69 None None None None None None None None None None
View combined sample_95.variant40 Y rs76644245
dbSNP Clinvar 		13310502 765.95 A G PASS 0/1 71 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489529 91.72 C T,G PASS 0/1 20 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489530 91.56 G A PASS 0/1 20 None None None None None None None None None None
View combined sample_95.variant40 Y rs372465161
dbSNP Clinvar 		13489532 277.58 G T,A PASS 0/2 20 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489533 91.56 G T PASS 0/1 20 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489539 82.53 C T,A PASS 0/1 22 None None None None None None None None None None
View combined sample_95.variant40 Y rs74864464
dbSNP Clinvar 		13310622 4948.41 C A PASS 0/1 277 None None None None None None None None None None
View combined sample_95.variant40 Y rs75367388
dbSNP Clinvar 		13310679 2702.08 A G PASS 0/1 202 None None None None None None None None None None
View combined sample_95.variant40 Y rs111422810
dbSNP Clinvar 		13489548 63.53 G A,C PASS 0/1 22 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489551 79.52 T A,G PASS 0/1 26 None None None None None None None None None None
View combined sample_95.variant40 Y rs78176760
dbSNP Clinvar 		13310683 2686.21 T C PASS 0/1 192 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489606 723.49 C T,A PASS 0/1 37 None None None None None None None None None None
View combined sample_95.variant40 Y rs111804532
dbSNP Clinvar 		13489393 90.21 T G,A PASS 0/1 42 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489394 32.94 G GA PASS 0/1 48 None None None None None None None None None None
View combined sample_95.variant40 Y rs1012630704
dbSNP Clinvar 		13489395 235.15 C T,G PASS 0/2 47 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489398 278.76 G A PASS 0/1 47 None None None None None None None None None None
View combined sample_95.variant40 Y rs1022631489
dbSNP Clinvar 		13489399 592.76 G T,A PASS 0/1 48 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489408 199.32 C A,T PASS 0/2 51 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489410 379.01 T C,A PASS 0/1 52 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489411 379.01 T A PASS 0/1 52 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489415 272.74 G T PASS 0/1 50 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489615 441.51 ACCC AC... PASS 0/2 31 None None None None None None None None None None
View combined sample_95.variant40 Y rs950619184
dbSNP Clinvar 		13489418 256.36 C A,G,T PASS 0/2 52 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489424 61.16 C T DRAGENHardSNP 0/1 59 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489616 160.34 C G,A PASS 0/2 30 None None None None None None None None None None
View combined sample_95.variant40 Y . 13489617 214.38 CCA CC... PASS 0/1 35 None None None None None None None None None None
View combined sample_95.variant40 Y rs1270119
dbSNP Clinvar 		2803717 1201.16 T C PASS 1/1 47 None None None 0.69749 0.69750 None None None None None None None
View combined sample_95.variant40 Y rs373106390
dbSNP Clinvar 		7224163 860.23 G C PASS 1/1 32 None None None 0.00082 None None None None None None None
View combined sample_95.variant40 Y rs7893095
dbSNP Clinvar 		9171956 160.68 A T PASS 1/1 7 None None None None None None None None None None
View combined sample_95.variant40 Y . 9193253 33.99 T G DRAGENHardSNP 0/1 9 None None None None None None None None None None
View combined sample_95.variant40 Y rs372659318
dbSNP Clinvar 		9234317 139.71 G A DRAGENHardSNP 0/1 58 None None None None None None None None None None
View combined sample_95.variant40 Y rs141241792
dbSNP Clinvar 		9234770 70.68 G A DRAGENHardSNP 1/1 25 None None None None None None None None None None
View combined sample_95.variant40 Y rs77413923
dbSNP Clinvar 		9304534 46.71 G C DRAGENHardSNP 0/1 12 None None None None None None None None None TSPY3|0.002096214|90.74%,TSPY1|0.0011843|94.53%
View combined sample_95.variant40 Y rs199532657
dbSNP Clinvar 		9306051 186.13 A G DRAGENHardSNP 0/1 8 None None None None None None None None None TSPY3|0.002096214|90.74%,TSPY1|0.0011843|94.53%
View combined sample_95.variant40 Y rs79714661
dbSNP Clinvar 		9354054 32.18 A C PASS 0/1 28 None None None None None None None None None None
View combined sample_95.variant40 Y rs76003078
dbSNP Clinvar 		13310495 542.77 T C PASS 0/1 63 None None None None None None None None None None
View combined sample_95.variant40 Y rs62601224
dbSNP Clinvar 		13551963 782.48 G A PASS 0/1 63 None None None None None None None None None None
View combined sample_95.variant40 Y . 13552074 1480.55 C T PASS 0/1 73 None None None None None None None None None None
View combined sample_95.variant40 Y rs77866025
dbSNP Clinvar 		13572999 104.76 A G PASS 0/1 13 None None None None None None None None None None
View combined sample_95.variant40 Y rs73620059
dbSNP Clinvar 		13573033 104.76 A C PASS 0/1 16 None None None None None None None None None None
View combined sample_95.variant40 Y rs199896924
dbSNP Clinvar 		13629732 855.09 A G PASS 1/1 25 None None None None None None None None None None
View combined sample_95.variant40 Y rs9650861
dbSNP Clinvar 		14107068 294.64 A C PASS 0/1 39 None None None None None None None None None None
View combined sample_95.variant40 Y rs753720839
dbSNP Clinvar 		14504001 1250.2 G A PASS 1/1 27 None None None 0.00324 0.00324 None None None None None None None
View combined sample_95.variant40 Y rs147207338,rs151160568
dbSNP Clinvar 		14954404 1464.41 C CT PASS 0/1 53 None None None 0.08815 None None None None None None USP9Y|0.030327795|69.25%
View combined sample_95.variant40 Y rs771808116
dbSNP Clinvar 		14968772 88.62 TA T DRAGENHardINDEL 0/1 79 None None None None None None None None None USP9Y|0.030327795|69.25%
View combined sample_95.variant40 Y rs371447069,rs202227456
dbSNP Clinvar 		16344400 311.31 C CC... PASS 1/1 7 None None None None None None None None None None
View combined sample_95.variant40 Y . 16942601 811.22 G A PASS 1/1 19 None None None None None None None None None NLGN4Y|0.004668477|86.25%
View combined sample_95.variant40 Y rs79788321
dbSNP Clinvar 		21154603 71.06 A C PASS 0/1 43 None None None None None None None None None None
View combined sample_95.variant40 Y rs766097685,rs56860055
dbSNP Clinvar 		21464187 629.34 G GG... PASS 1/1 7 None None None None None None None None None None
View combined sample_95.variant40 Y rs35466474
dbSNP Clinvar 		21758154 1397.08 AGT AG... PASS 2/2 28 None None None None None None None None None None
View combined sample_95.variant40 Y rs72622302
dbSNP Clinvar 		21764212 1626.03 C T PASS 1/1 87 None None None 0.00892 0.00892 0.01637 None None None None None None None
View combined sample_95.variant40 Y rs10465459
dbSNP Clinvar 		21154323 348.35 G A PASS 0/1 28 None None None None None None None None None None
View combined sample_95.variant40 Y rs2032631
dbSNP Clinvar 		21867787 972.34 A G PASS 1/1 27 None None None 0.69749 0.69750 None None None None None None KDM5D|0.002449528|89.81%
View combined sample_95.variant40 Y rs75169378
dbSNP Clinvar 		13489425 343.48 T C PASS 0/1 60 None None None None None None None None None None
View combined sample_95.variant40 Y rs962824216
dbSNP Clinvar 		13489427 490.39 G A PASS 0/1 59 None None None None None None None None None None
View combined sample_95.variant40 Y rs933969611
dbSNP Clinvar 		13489446 294.46 G A PASS 0/1 39 None None None None None None None None None None
View combined sample_95.variant40 Y rs914566108
dbSNP Clinvar 		13488264 382.48 C T PASS 0/1 24 None None None None None None None None None None
View combined sample_95.variant40 Y rs79167869
dbSNP Clinvar 		13489475 145.59 T C PASS 0/1 32 None None None None None None None None None None
View combined sample_95.variant40 Y rs1016089912
dbSNP Clinvar 		13489482 330.08 C T,A PASS 0/1 32 None None None None None None None None None None
View combined sample_95.variant40 Y rs111812426
dbSNP Clinvar 		13489491 330.08 G T,A PASS 0/1 31 None None None None None None None None None None
View combined sample_95.variant40 Y rs934923943
dbSNP Clinvar 		13489493 286.61 C A PASS 0/1 31 None None None None None None None None None None
View combined sample_95.variant40 Y rs914602442
dbSNP Clinvar 		13488307 283.45 G A PASS 0/1 31 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488317 373.45 C T PASS 0/1 32 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488323 91.41 C A,G PASS 0/2 34 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488324 223.55 C T,G,A PASS 0/3 33 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488325 58.19 G A,T,C PASS 0/2 34 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488329 61.61 TAC T PASS 0/1 33 None None None None None None None None None None
View combined sample_95.variant40 Y rs111232028
dbSNP Clinvar 		13488330 215.24 A G,T PASS 0/1 33 None None None None None None None None None None
View combined sample_95.variant40 Y . 13488332 61.61 TC T PASS 0/1 35 None None None None None None None None None None
View combined sample_95.variant40 Y rs1044180638
dbSNP Clinvar 		13489507 253.66 G T,A PASS 0/1 29 None None None None None None None None None None
View combined sample_95.variant40 Y rs906916260
dbSNP Clinvar 		13489513 67.48 C G,T PASS 0/1 28 None None None None None None None None None None
View combined sample_95.variant40 Y rs1016572614
dbSNP Clinvar 		13489523 121.51 C T PASS 0/1 26 None None None None None None None None None None
View combined sample_95.variant40 Y rs75046726
dbSNP Clinvar 		13489300 253.66 A C,G,T PASS 0/2 15 None None None None None None None None None None
View combined sample_95.variant40 Y rs955456230
dbSNP Clinvar 		13489540 220.54 G A,C PASS 0/2 24 None None None None None None None None None None
View combined sample_95.variant40 Y rs80084783
dbSNP Clinvar 		13310507 912.84 G A PASS 0/1 78 None None None None None None None None None None
View combined sample_95.variant40 Y rs112656306
dbSNP Clinvar 		13310524 1659.71 G A PASS 0/1 114 None None None None None None None None None None
View combined sample_95.variant40 Y rs76988723
dbSNP Clinvar 		13310525 1923.46 A G PASS 0/1 117 None None None None None None None None None None
View combined sample_95.variant40 Y . 13310531 1950.4 C A PASS 0/1 135 None None None None None None None None None None
View combined sample_95.variant40 Y . 13310532 1950.4 C G PASS 0/1 134 None None None None None None None None None None
View combined sample_95.variant40 Y rs878979293
dbSNP Clinvar 		13310559 3272.71 T C PASS 0/1 181 None None None None None None None None None None
View combined sample_95.variant40 Y rs80348613
dbSNP Clinvar 		13310567 3650.46 T C PASS 0/1 200 None None None None None None None None None None
View combined sample_95.variant40 Y rs200185916
dbSNP Clinvar 		13310578 4010.15 C T PASS 0/1 228 None None None None None None None None None None