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SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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+ Genes

Genes:

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 12
Number of Genes: 0

Export to: CSV
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Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_68.variant29 5 rs869220576
dbSNP Clinvar 		179780386 211.3 C CG PASS 0/1 16 TRANSCRIPT MODIFIER None None None None None None None GFPT2|0.124871701|46.65%
View combined sample_68.variant29 10 rs764357164
dbSNP Clinvar 		6622236 279.57 AC... AC... PASS 0/1 15 TRANSCRIPT MODIFIER None None None None None None None PRKCQ|0.198764391|36.85%
View combined sample_68.variant29 10 rs556984591
dbSNP Clinvar 		134210667 361.74 CC... C,... PASS 0/1 15 TRANSCRIPT MODIFIER None 0.30232 0.30230 None None None None None None None
View combined sample_68.variant29 13 rs766851780
dbSNP Clinvar 		44453930 1203.78 GG... G PASS 0/1 80 TRANSCRIPT MODIFIER None None None None None None None LACC1|0.150502517|42.93%
View combined sample_68.variant29 13 rs61959964
dbSNP Clinvar 		44453939 1339.25 C T PASS 0/1 58 TRANSCRIPT MODIFIER None None None None None None None LACC1|0.150502517|42.93%
View combined sample_68.variant29 13 rs752391091,rs67775819
dbSNP Clinvar 		92050910 190.87 CG... C PASS 0/1 56 TRANSCRIPT MODIFIER None None None None None None None None
View combined sample_68.variant29 13 rs552034804,rs60533993
dbSNP Clinvar 		92050925 668.65 CG... C PASS 0/1 50 TRANSCRIPT MODIFIER None 0.61941 0.61940 None None None None None None None
View combined sample_68.variant29 21 rs775594353,rs569148732
dbSNP Clinvar 		45196323 1796.83 CG... C PASS 0/1 33 TRANSCRIPT MODIFIER None None None None None None None CSTB|0.004766678|86.14%
View combined sample_68.variant29 3 . 122060816 39.53 AGTGT AGT,A PASS 0/1 8 TRANSCRIPT MODIFIER None None None None None None None CSTA|0.015847589|76.56%
View combined sample_68.variant29 5 rs765129917
dbSNP Clinvar 		179780382 1202.63 AG... AG... PASS 2/3 16 TRANSCRIPT MODIFIER None None None None None None None GFPT2|0.124871701|46.65%
View combined sample_68.variant29 10 rs200928741,rs61029493
dbSNP Clinvar 		129924642 179.15 TC... T PASS 1/1 7 TRANSCRIPT MODIFIER None 0.56609 0.56610 None None None None None None MKI67|0.001491806|92.81%
View combined sample_68.variant29 14 rs4007475
dbSNP Clinvar 		35515606 7862.81 TGG T PASS 0/1 181 TRANSCRIPT MODIFIER None None None None None None None FAM177A1|0.149130642|43.12%
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