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SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

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SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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+ Genes

Genes:

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 16
Number of Genes: 0

Export to: CSV
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Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_66.variant27 3 rs147398495,rs869279285,rs148977443
dbSNP Clinvar 		46249943 31.81 GTTC G PASS 1/1 6 MOTIF[MA0114.1:HNF4A] LOW None 0.64197 0.64200 None None None None None None CCR3|0.024651791|71.95%
View combined sample_66.variant27 6 rs9501868
dbSNP Clinvar 		2667349 349.31 T C PASS 0/1 26 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.32209 0.32210 None None None None None None MYLK4|0.069271127|57.67%
View combined sample_66.variant27 6 rs9501869
dbSNP Clinvar 		2667370 279.88 T A PASS 0/1 23 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.32190 None None None None None None MYLK4|0.069271127|57.67%
View combined sample_66.variant27 10 rs1126827
dbSNP Clinvar 		48438734 3638.59 C T PASS 1/1 140 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.68490 0.68490 0.25000 None None None None None None GDF10|0.0826415|54.67%
View combined sample_66.variant27 14 rs67238064
dbSNP Clinvar 		24768947 1217.6 AG A PASS 1/1 54 MOTIF[MA0114.1:HNF4A] LOW None 0.26777 0.26780 None None None None None None DHRS1|0.040246768|65.68%
View combined sample_66.variant27 16 . 11769671 344.85 A G PASS 0/1 20 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None SNN|0.544898093|14%
View combined sample_66.variant27 17 rs74933984
dbSNP Clinvar 		41046727 1308.86 G A PASS 0/1 19 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.05631 0.05631 None None None None None None None
View combined sample_66.variant27 22 rs11704682
dbSNP Clinvar 		37420123 546.7 C G PASS 0/1 67 MOTIF[MA0114.1:HNF4A] LOW None 0.07109 0.07109 None None None None None None MPST|0.07242548|56.91%
View combined sample_66.variant27 6 rs199865018
dbSNP Clinvar 		167786991 84.71 G A PASS 0/1 34 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None TCP10|0.000628006|97.7%
View combined sample_66.variant27 17 rs74965213
dbSNP Clinvar 		76522837 992.52 A G PASS 0/1 48 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.09125 0.09125 0.12835 None None None None None None DNAH17|0.043900967|64.55%
View combined sample_66.variant27 18 rs4797103
dbSNP Clinvar 		3261764 676.78 G T PASS 1/1 13 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.90355 0.90360 None None None None None None None
View combined sample_66.variant27 19 rs79749579,rs386388574,rs386365455
dbSNP Clinvar 		12662318 5501.05 G GC PASS 1/1 236 MOTIF[MA0114.1:HNF4A] LOW None 0.99241 0.99240 None None None None None None ZNF564|0.000930238|95.9%
View combined sample_66.variant27 19 rs4803026
dbSNP Clinvar 		53466214 251.12 G A PASS 0/1 31 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.02855 0.02855 None None None None None None None
View combined sample_66.variant27 2 rs3731838
dbSNP Clinvar 		38960927 2316.02 G A PASS 0/1 74 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.63898 0.63900 None None None None None None GALM|0.264774088|30.32%
View combined sample_66.variant27 2 rs514795
dbSNP Clinvar 		239358852 1211.73 A T PASS 0/1 103 MOTIF[MA0114.1:HNF4A] LOW None 0.22244 0.22240 None None None None None None ASB1|0.120445216|47.38%
View combined sample_66.variant27 6 rs3757318
dbSNP Clinvar 		151914113 1240.63 G A PASS 0/1 62 MOTIF[MA0114.1:HNF4A] MODIFIER None 0.09006 0.09006 None None None None None None CCDC170|0.073258235|56.72%
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