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INDIVIDUALS:

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VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
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Genes at Omim

ALMS1, GPX1, HLA-B, HLA-C, HLA-DRB1, HMGA1, MSH3, NIPA1,
ALMS1 Alstrom syndrome, 203800 (3)
GPX1 Hemolytic anemia due to glutathione peroxidase deficiency, 614164 (1)
HLA-B {Drug-induced liver injury due to flucloxacillin} (3)
{Spondyloarthropathy, susceptibility to, 1}, 106300 (3)
{Stevens-Johnson syndrome, susceptibility to}, 608579 (3)
{Synovitis, chronic, susceptibility to} (3)
{Toxic epidermal necrolysis, susceptibility to}, 608579 (3)
{Abacavir hypersensitivity, susceptibility to} (3)
HLA-C {HIV-1 viremia, susceptibility to}, 609423 (3)
{Psoriasis susceptibility 1}, 177900 (3)
HLA-DRB1 {Multiple sclerosis, susceptibility to, 1}, 126200 (3)
{Sarcoidosis, susceptibility to, 1}, 181000 (3)
HMGA1 {Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3)
MSH3 Endometrial carcinoma, somatic, 608089 (3)
Familial adenomatous polyposis 4, 617100 (3)
NIPA1 Spastic paraplegia 6, autosomal dominant, 600363 (3)

Genes at Clinical Genomics Database

ALMS1, HLA-B, MSH3, NIPA1,
ALMS1 Alstrom syndrome
HLA-B Drug-induced toxicity, susceptibility to
MSH3 Endometrial carcinoma
NIPA1 Spastic paraplegia 6

Genes at HGMD

Summary

Number of Variants: 348
Number of Genes: 16

Export to: CSV

ALMS1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 2 rs864622738
dbSNP Clinvar
73613031 601.68 TG... TG... PASS 1/2 48 CODON_CHANGE_PLUS_CODON_INSERTION MODERATE None None None None None None None ALMS1|0.012791041|78.65%

CHL1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 3 rs768683821
dbSNP Clinvar
239555 1186.5 CT CT... PASS 1/2 77 None None None None None None None None None None

FAM230A

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 22 . 20709574 2371.74 AT... A,... PASS 1/2 156 NON_SYNONYMOUS_CODING MODERATE None None None None None None None FAM230A|0.000608157|97.89%,USP41|0.001419633|93.25%

GPX1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 3 rs17838762,rs56041243
dbSNP Clinvar
49395673 3937.2 GG... G,... PASS 1/2 70 CODON_DELETION MODERATE None 0.42721 None None None None None None GPX1|0.756845833|6.93%

HLA-B

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 6 rs713031
dbSNP Clinvar
31324666 5562.94 A C,T PASS 1/2 243 NON_SYNONYMOUS_CODING MODERATE None 0.19748 0.49640 0.41231 1.00 0.00 None None None None None None HLA-B|0.04113834|65.4%

HLA-C

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 6 rs2308590
dbSNP Clinvar
31238942 7260.84 G A,T PASS 1/2 228 NON_SYNONYMOUS_CODING MODERATE None 0.29673 0.29670 0.39404 0.69 0.00 None None None None None None HLA-C|0.028815016|70%

HLA-DRB1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 6 rs754316114
dbSNP Clinvar
32552132 1987.28 TC... AC... PASS 1/2 105 FRAME_SHIFT HIGH None None None None None None None HLA-DRB1|0.032266025|68.49%
View combined sample_57.variant20 6 rs707957
dbSNP Clinvar
32552059 1491.86 G T,A PASS 1/2 322 NON_SYNONYMOUS_CODING MODERATE None 0.30476 1.00 0.00 None None None None None None HLA-DRB1|0.032266025|68.49%

HLA-DRB5

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 6 rs1071748
dbSNP Clinvar
32489933 349.68 T C,G,A PASS 1/2 58 NON_SYNONYMOUS_CODING MODERATE None 0.39 0.00 None None None None None None HLA-DRB5|0.020830666|73.74%
View combined sample_57.variant20 6 rs1071747
dbSNP Clinvar
32489940 307.69 G A,C,T PASS 1/2 57 STOP_GAINED HIGH None 0.04728 None None None None None None HLA-DRB5|0.020830666|73.74%
View combined sample_57.variant20 6 rs142793258
dbSNP Clinvar
32489883 601.61 G C,T PASS 1/2 54 NON_SYNONYMOUS_CODING MODERATE None 0.63019 0.63020 0.71 0.00 None None None None None None HLA-DRB5|0.020830666|73.74%
View combined sample_57.variant20 6 rs138849995
dbSNP Clinvar
32489877 685.59 C G,A PASS 1/2 55 NON_SYNONYMOUS_CODING MODERATE None 0.33 0.01 None None None None None None HLA-DRB5|0.020830666|73.74%

HMGA1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 6 rs2780219
dbSNP Clinvar
34212743 1874.47 A C,G PASS 1/2 81 NON_SYNONYMOUS_CODING MODERATE None 0.00240 0.00240 0.07 0.00 None None None None None None HMGA1|0.240174971|32.42%

IVL

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 1 rs7520711,rs758373475
dbSNP Clinvar
152882982 773.67 C G,... PASS 1/2 21 NON_SYNONYMOUS_CODING MODERATE None 0.42432 0.42430 None None None None None None IVL|0.002902811|88.82%

KIAA1328

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 18 rs3747896
dbSNP Clinvar
34647323 4738.82 T A,G PASS 1/2 138 SYNONYMOUS_CODING LOW None 0.08846 0.25940 0.29799 None None None None None None KIAA1328|0.145244522|43.68%

MSH3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 5 rs758718643,rs70991168
dbSNP Clinvar
79950724 1463.38 G GC... PASS 1/2 34 CODON_INSERTION MODERATE None None None None None None None DHFR|0.849258328|4.67%,MSH3|0.44757189|18.27%

NIPA1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 15 rs531550505
dbSNP Clinvar
23086364 3665.84 GGCC G,... PASS 1/2 79 CODON_INSERTION MODERATE None 0.06190 0.06190 None None None None None None NIPA1|0.380603066|22%

PARP8

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 5 rs282547
dbSNP Clinvar
50057729 1768.54 G A,T PASS 1/2 72 SYNONYMOUS_CODING LOW None 0.09904 0.46790 0.47686 None None None None None None PARP8|0.488792506|16.37%

POU2F1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 1 rs750339731
dbSNP Clinvar
167385324 2220.98 TA... TA... PASS 1/2 84 None None None None None None None None None POU2F1|0.805592985|5.68%

TTLL8

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 22 rs738333
dbSNP Clinvar
50468907 2013.9 C G,T PASS 1/2 81 NON_SYNONYMOUS_CODING MODERATE None 0.32668 0.32670 0.41811 0.13 0.00 None None None None None None TTLL8|0.003305511|88.08%
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_57.variant20 1 rs781763279
dbSNP Clinvar
228107387 79.67 TA... T,... PASS 1/2 11 None None None None None None None None None WNT9A|0.206885197|35.91%
View combined sample_57.variant20 1 rs10925022
dbSNP Clinvar
247597365 983.6 G A,... PASS 1/2 8 None None None 0.11402 0.78870 0.09257 None None None None None None NLRP3|0.017756451|75.44%
View combined sample_57.variant20 1 rs797013428
dbSNP Clinvar
247921789 198.31 AGT AG... PASS 1/2 20 None None None None None None None None None OR1C1|0.00291809|88.77%
View combined sample_57.variant20 2 rs879116936,rs750095117
dbSNP Clinvar
287448 474.57 TAAAA T,... PASS 1/2 35 None None None None None None None None None FAM150B|0.057005621|60.68%
View combined sample_57.variant20 2 rs559913796,rs137982132
dbSNP Clinvar
25875401 518.6 T TA... PASS 1/2 36 None None None 0.41354 0.41350 None None None None None None DTNB|0.389089308|21.48%
View combined sample_57.variant20 2 rs139356455,rs869049573,rs869287277,rs568451117
dbSNP Clinvar
119751769 340.72 AAAC A,... PASS 1/2 19 None None None 0.00938 0.55090 None None None None None None MARCO|0.006454862|84.11%
View combined sample_57.variant20 2 rs55733736,rs58035876,rs397948972
dbSNP Clinvar
120195700 2325.77 G C,GC PASS 1/2 64 None None None 0.98622 0.98620 None None None None None None TMEM37|0.024253839|72.11%
View combined sample_57.variant20 2 rs34788166,rs397971039
dbSNP Clinvar
203748544 602.12 A AT... PASS 1/2 26 None None None 0.00339 0.88540 None None None None None None WDR12|0.769967473|6.57%
View combined sample_57.variant20 2 rs113821778,rs59847589
dbSNP Clinvar
207945785 1066.09 A AT... PASS 1/2 42 None None None None None None None None None KLF7|0.833104461|5.04%
View combined sample_57.variant20 2 rs769930096
dbSNP Clinvar
225719781 1416.07 GA... GA... PASS 1/2 57 None None None None None None None None None DOCK10|0.382989612|21.86%
View combined sample_57.variant20 3 rs73022117,rs3836383
dbSNP Clinvar
14706770 517.36 A G,... PASS 1/2 19 None None None 0.30391 0.30390 None None None None None None CCDC174|0.058204393|60.36%
View combined sample_57.variant20 3 rs34961993,rs397750624
dbSNP Clinvar
20025665 7336.66 G GA... PASS 1/2 232 None None None 0.23982 0.47620 None None None None None None RAB5A|0.620368662|11.08%,PP2D1|0.002863197|88.92%
View combined sample_57.variant20 3 . 57335705 710.0 TA... TA... PASS 1/2 38 None None None None None None None None None DNAH12|0.248045233|31.71%
View combined sample_57.variant20 3 rs62821060,rs869101624,rs397732523
dbSNP Clinvar
98518160 3885.32 T TA... PASS 1/2 152 None None None None None None None None None ST3GAL6|0.150858254|42.85%,DCBLD2|0.153168212|42.49%
View combined sample_57.variant20 3 rs772972831,rs869250763
dbSNP Clinvar
129369121 1899.51 CAAA CA... PASS 1/2 77 None None None None None None None None None TMCC1|0.404814621|20.48%
View combined sample_57.variant20 3 rs377262480,rs5852785
dbSNP Clinvar
134204833 3512.57 GCCC G,GCC PASS 1/2 58 None None None 0.97943 0.97940 None None None None None None ANAPC13|0.252416865|31.34%,CEP63|0.16402888|41.02%
View combined sample_57.variant20 3 rs35004235,rs398082737
dbSNP Clinvar
183814722 270.29 CA C,CAA PASS 1/2 20 None None None 0.05931 0.60780 None None None None None None None
View combined sample_57.variant20 4 . 16085931 4512.6 AA... AA... PASS 1/2 71 None None None None None None None None None PROM1|0.156059694|42.13%
View combined sample_57.variant20 4 . 17633666 5033.11 AT... A,... PASS 1/2 118 None None None None None None None None None MED28|0.193447823|37.48%,FAM184B|0.029449626|69.64%
View combined sample_57.variant20 4 rs200401097,rs538098842,rs567463413
dbSNP Clinvar
77065476 2780.55 TAAA T,... PASS 1/2 46 None None None 0.21250 None None None None None None NUP54|0.507295203|15.51%
View combined sample_57.variant20 4 rs59335499,rs750605866
dbSNP Clinvar
77105952 575.42 A AT... PASS 1/2 16 None None None 0.41873 0.41870 None None None None None None SCARB2|0.345851225|24.43%
View combined sample_57.variant20 4 rs777531092
dbSNP Clinvar
78635592 1373.42 TA... TA... PASS 1/2 52 None None None None None None None None None CNOT6L|0.809704188|5.58%
View combined sample_57.variant20 4 rs5860842
dbSNP Clinvar
107957516 324.35 CT C,... PASS 1/2 33 None None None 0.50260 0.50260 None None None None None None DKK2|0.664974812|9.53%
View combined sample_57.variant20 4 rs70947158,rs397995883
dbSNP Clinvar
155225784 1104.39 AA... A,... PASS 1/2 24 None None None 0.03494 0.51900 None None None None None None DCHS2|0.027332994|70.73%
View combined sample_57.variant20 4 rs200266917
dbSNP Clinvar
164245892 5511.13 GAA G,GA PASS 1/2 198 None None None None None None None None None NPY1R|0.220873712|34.33%
View combined sample_57.variant20 4 rs10622647
dbSNP Clinvar
190329166 1765.28 G GC... PASS 1/2 43 None None None 0.47085 0.47080 None None None None None None None
View combined sample_57.variant20 5 rs11370960,rs397789444,rs369965853
dbSNP Clinvar
34685125 7434.25 A AT... PASS 1/2 262 None None None 0.36182 0.62560 None None None None None None RAI14|0.371047945|22.65%
View combined sample_57.variant20 5 rs5868412,rs397884711
dbSNP Clinvar
64931971 139.43 C CT... PASS 1/2 23 None None None 0.38838 0.38840 None None None None None None TRAPPC13|0.466974233|17.31%
View combined sample_57.variant20 5 rs4835684
dbSNP Clinvar
136954583 5262.43 T A,... PASS 1/2 74 None None None None None None None None None KLHL3|0.289099226|28.42%
View combined sample_57.variant20 5 rs749786657
dbSNP Clinvar
137762551 71.45 CAA CA,C PASS 1/2 6 None None None None None None None None None KDM3B|0.604804849|11.65%
View combined sample_57.variant20 5 rs774584979,rs35601548
dbSNP Clinvar
137772590 2096.47 CTT C,CT PASS 1/2 65 None None None None None None None None None KDM3B|0.604804849|11.65%
View combined sample_57.variant20 6 rs67901303
dbSNP Clinvar
29908928 1782.38 GAC G,AAC PASS 1/2 39 None None None 0.30931 0.30930 None None None None None None None
View combined sample_57.variant20 6 rs9260109
dbSNP Clinvar
29909756 1085.59 G C,T PASS 1/2 43 None None None 0.15276 0.52960 None None None None None None HLA-A|0.043055872|64.8%
View combined sample_57.variant20 7 . 27672199 99.06 CAA CA... PASS 1/2 22 None None None None None None None None None HIBADH|0.584442275|12.38%
View combined sample_57.variant20 6 rs9266214
dbSNP Clinvar
31325049 3097.2 G A,T PASS 1/2 163 None None None 0.02756 0.76820 None None None None None None None
View combined sample_57.variant20 6 rs58452257,rs765681166,rs397686570
dbSNP Clinvar
99991890 1195.73 CAAA C,CA PASS 1/2 26 None None None None None None None None None CCNC|0.941035003|2.45%
View combined sample_57.variant20 6 . 101305757 641.29 TAC TA... PASS 1/2 70 None None None None None None None None None ASCC3|0.710572602|8.22%
View combined sample_57.variant20 6 rs58274929
dbSNP Clinvar
135282228 801.51 CTTT CT... PASS 1/2 21 None None None 0.47923 0.47920 None None None None None None HBS1L|0.447884316|18.25%
View combined sample_57.variant20 7 . 108110815 62.57 CA... CA... PASS 1/2 16 None None None None None None None None None None
View combined sample_57.variant20 7 rs564770216,rs2255813
dbSNP Clinvar
112722278 10986.8 A C,AC PASS 1/2 238 None None None 0.00120 0.76080 None None None None None None GPR85|0.675677831|9.21%
View combined sample_57.variant20 7 rs796247008,rs548078791
dbSNP Clinvar
120739962 2782.52 GTT G,GT PASS 1/2 98 None None None 0.61700 None None None None None None CPED1|0.185612719|38.28%
View combined sample_57.variant20 7 rs796497993
dbSNP Clinvar
141899660 459.74 CTT CT... PASS 1/2 39 None None None None None None None None None None
View combined sample_57.variant20 7 . 145691987 296.95 CT... C,... PASS 1/2 17 None None None None None None None None None None
View combined sample_57.variant20 7 rs774782717,rs562663830
dbSNP Clinvar
150491995 1586.79 CC... C,... PASS 1/2 62 None None None None None None None None None TMEM176B|0.002121797|90.68%
View combined sample_57.variant20 8 rs113930926,rs71740200,rs11392432,rs34926783
dbSNP Clinvar
28203280 4275.38 C CT... PASS 1/2 77 None None None 0.87640 0.87640 None None None None None None ZNF395|0.039057454|66.08%
View combined sample_57.variant20 8 rs5892393,rs3830249
dbSNP Clinvar
73983988 964.76 TAA T,... PASS 1/2 48 None None None None None None None None None SBSPON|0.105488838|50.14%
View combined sample_57.variant20 8 rs34118572,rs59580956
dbSNP Clinvar
136659488 605.5 G GA... PASS 1/2 25 None None None 0.64856 0.64860 None None None None None None KHDRBS3|0.637834421|10.52%
View combined sample_57.variant20 9 rs3750440
dbSNP Clinvar
94711016 796.88 T G,A PASS 1/2 64 None None None 0.14796 0.14800 None None None None None None ROR2|0.086953788|53.78%
View combined sample_57.variant20 9 rs774415237
dbSNP Clinvar
95838022 102.1 AC A,CC PASS 1/2 6 None None None None None None None None None SUSD3|0.004837078|86.04%
View combined sample_57.variant20 9 . 134363656 668.05 CT C,... PASS 1/2 44 None None None None None None None None None PRRC2B|0.148927133|43.15%
View combined sample_57.variant20 10 rs765829766
dbSNP Clinvar
321410 2540.48 CTTT CT... PASS 1/2 181 None None None None None None None None None DIP2C|0.162764549|41.18%
View combined sample_57.variant20 10 . 61411521 1591.68 GC... GC... PASS 1/2 146 None None None None None None None None None SLC16A9|0.142486434|44.07%
View combined sample_57.variant20 10 rs5786459,rs5786460,rs10628646
dbSNP Clinvar
82279270 4645.4 A AT... PASS 1/2 271 None None None 0.91653 0.91650 None None None None None None TSPAN14|0.250239984|31.5%
View combined sample_57.variant20 11 rs71025733,rs398015180
dbSNP Clinvar
1490643 222.63 TG T,TGG PASS 1/2 51 None None None 0.38798 0.38800 None None None None None None None
View combined sample_57.variant20 11 . 27370350 622.98 GAAA GA... PASS 1/2 21 None None None None None None None None None CCDC34|0.046266508|63.84%
View combined sample_57.variant20 11 rs35556457,rs774338148,rs74537032
dbSNP Clinvar
27412782 276.61 CTTT C,... PASS 1/2 20 None None None None None None None None None LGR4|0.274795395|29.54%
View combined sample_57.variant20 11 rs28722151,rs149254890
dbSNP Clinvar
27681176 1235.89 C G,... PASS 1/2 32 None None None 0.29892 0.29890 None None None None None None BDNF|0.999919401|0.18%
View combined sample_57.variant20 11 rs796872598
dbSNP Clinvar
67412203 693.75 CCA CC... PASS 1/2 21 None None None None None None None None None ACY3|0.003638285|87.53%
View combined sample_57.variant20 11 rs749145069
dbSNP Clinvar
77633274 553.92 CAA C,... PASS 1/2 57 None None None None None None None None None INTS4|0.13856273|44.61%
View combined sample_57.variant20 11 rs796751592,rs59639020
dbSNP Clinvar
115046095 589.25 GA G,GAA PASS 1/2 15 None None None 0.44649 0.44650 None None None None None None CADM1|0.998253691|0.53%
View combined sample_57.variant20 12 rs202204123
dbSNP Clinvar
7982753 347.18 CTT C,CT PASS 1/2 18 None None None 0.00479 0.27700 None None None None None None SLC2A14|0.007322818|83.21%
View combined sample_57.variant20 12 rs147607139,rs3059415
dbSNP Clinvar
20833760 273.08 CT... CT... PASS 1/2 28 None None None None None None None None None PDE3A|0.202234491|36.5%
View combined sample_57.variant20 12 rs63070260
dbSNP Clinvar
104341752 4026.77 ATT A,AT PASS 1/2 105 None None None 0.45727 0.45730 None None None None None None HSP90B1|0.448274361|18.23%
View combined sample_57.variant20 12 rs778273363
dbSNP Clinvar
117768105 947.05 GCA GC... PASS 1/2 59 None None None None None None None None None NOS1|0.549373488|13.75%
View combined sample_57.variant20 12 . 129298819 1347.02 C CG... PASS 1/2 54 None None None None None None None None None SLC15A4|0.01815696|75.21%
View combined sample_57.variant20 12 rs55788836,rs575793819,rs398021683
dbSNP Clinvar
131476665 367.83 CAAA C,CA PASS 1/2 8 None None None 0.41010 None None None None None None ADGRD1|0.008485003|82.17%
View combined sample_57.variant20 12 rs372899188,rs71076441,rs57700507
dbSNP Clinvar
133032047 1712.34 T TG... PASS 1/2 138 None None None 0.45447 0.45450 None None None None None None None
View combined sample_57.variant20 13 rs754357866
dbSNP Clinvar
28647489 812.68 GA... GA... PASS 1/2 47 None None None None None None None None None FLT3|0.691934663|8.71%
View combined sample_57.variant20 13 rs796889609
dbSNP Clinvar
28877629 1610.41 AC AC... PASS 1/2 63 None None None None None None None None None FLT1|0.896227034|3.5%
View combined sample_57.variant20 13 rs10624110,rs397725477
dbSNP Clinvar
30077879 2039.73 G GA... PASS 1/2 76 SPLICE_SITE_REGION LOW None 0.13259 0.75540 None None None None None None MTUS2|0.119691601|47.5%
View combined sample_57.variant20 13 rs2031237
dbSNP Clinvar
99109319 269.55 C A,T PASS 1/2 35 None None None 0.21366 0.21370 None None None None None None STK24|0.148009542|43.29%
View combined sample_57.variant20 14 rs112985939
dbSNP Clinvar
23025586 3159.59 GT G,AT PASS 1/2 80 None None None None None None None None None None
View combined sample_57.variant20 14 . 54869027 320.36 CG... CG... PASS 1/2 19 None None None None None None None None None CDKN3|0.691250285|8.74%
View combined sample_57.variant20 14 rs4899584
dbSNP Clinvar
76618849 3266.99 C A,T PASS 1/2 145 None None None 0.38618 0.38620 None None None None None None GPATCH2L|0.283468162|28.84%
View combined sample_57.variant20 14 rs61979250,rs398025758
dbSNP Clinvar
76668905 4138.13 C G,CAG PASS 1/2 63 None None None 0.73103 0.73100 None None None None None None GPATCH2L|0.283468162|28.84%
View combined sample_57.variant20 15 rs535067472
dbSNP Clinvar
37026600 544.36 ATT A,... PASS 1/2 30 None None None 0.03714 0.03714 None None None None None None C15orf41|0.924370547|2.88%
View combined sample_57.variant20 15 rs571158033,rs5812047,rs398118763
dbSNP Clinvar
38991314 749.26 T TA... PASS 1/2 21 None None None 0.50359 0.50360 None None None None None None C15orf53|0.000703628|97.23%
View combined sample_57.variant20 15 rs11853293,rs56132408
dbSNP Clinvar
40645347 1698.26 T C,... PASS 1/2 38 None None None 0.39756 0.39760 None None None None None None PHGR1|0.000660043|97.47%
View combined sample_57.variant20 15 rs768597576
dbSNP Clinvar
49009405 532.88 ATTT AT... PASS 1/2 17 None None None None None None None None None CEP152|0.092828159|52.66%
View combined sample_57.variant20 15 . 75663304 1696.15 CAA C,CA PASS 1/2 109 None None None None None None None None None SIN3A|0.742331076|7.32%