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EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

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+ Genes 4

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 28
Number of Genes: 4

Export to: CSV
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PCDH11Y
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View filtered_merged_a00k Y rs2563389
dbSNP Clinvar 		4968655 824.77 T G LowConfident 1/1 27 NON_SYNONYMOUS_CODING MODERATE None 0.34057 1.00 0.00 None None None None None None PCDH11Y|0.030798406|69.05%
View filtered_merged_a00k Y rs2524543
dbSNP Clinvar 		4968368 352.77 G T LowConfident 1/1 12 NON_SYNONYMOUS_CODING MODERATE None 0.47073 1.00 0.00 None None None None None None PCDH11Y|0.030798406|69.05%

RPS4Y2
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View filtered_merged_a00k Y rs34459399
dbSNP Clinvar 		22942897 860.77 T C PASS 1/1 29 SYNONYMOUS_CODING LOW None 0.03163 0.03163 0.02333 None None None None None None RPS4Y2|0.002150562|90.59%

SLC9B1P1
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View filtered_merged_a00k Y rs78220120
dbSNP Clinvar 		13524664 818.77 C A PASS 0/1 109 NON_SYNONYMOUS_CODING MODERATE None 0.02 1.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View filtered_merged_a00k Y rs373109292
dbSNP Clinvar 		13500658 69.77 T A LowConfident 0/1 36 STOP_GAINED HIGH None None None None None None None SLC9B1P1|0.002112226|90.7%
View filtered_merged_a00k Y rs373363143
dbSNP Clinvar 		13524639 263.77 C T PASS 0/1 103 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View filtered_merged_a00k Y rs77147889
dbSNP Clinvar 		13524594 493.77 G T PASS 0/1 62 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None SLC9B1P1|0.002112226|90.7%
View filtered_merged_a00k Y rs78395530
dbSNP Clinvar 		13524548 100.77 T G PASS 0/1 32 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None SLC9B1P1|0.002112226|90.7%

TSPY1
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View filtered_merged_a00k Y rs200389251
dbSNP Clinvar 		9304945 268.77 G A LowConfident 0/1 35 SYNONYMOUS_CODING LOW None None None None None None None TSPY3|0.002096214|90.74%,TSPY1|0.0011843|94.53%
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View filtered_merged_a00k Y rs2032604
dbSNP Clinvar 		14969634 1113.77 T G PASS 1/1 34 None None None 0.04947 0.04947 0.03111 None None None None None None USP9Y|0.030327795|69.25%
View filtered_merged_a00k Y rs13304344
dbSNP Clinvar 		14958218 384.77 C T PASS 1/1 13 None None None 0.98459 0.98460 0.03152 None None None None None None USP9Y|0.030327795|69.25%
View filtered_merged_a00k Y rs147207338,rs151160568
dbSNP Clinvar 		14954404 1125.73 C CT PASS 0/1 79 None None None 0.08815 None None None None None None USP9Y|0.030327795|69.25%
View filtered_merged_a00k Y rs760255651
dbSNP Clinvar 		14898435 91.73 CT C PASS 0/1 45 None None None None None None None None None USP9Y|0.030327795|69.25%
View filtered_merged_a00k Y rs75568005
dbSNP Clinvar 		13524761 259.77 C T PASS 0/1 19 None None None None None None None None None None
View filtered_merged_a00k Y rs770823890
dbSNP Clinvar 		13524753 118.77 C A PASS 0/1 24 None None None None None None None None None None
View filtered_merged_a00k Y rs75759077
dbSNP Clinvar 		13524752 457.77 G T PASS 0/1 25 None None None None None None None None None None
View filtered_merged_a00k Y rs79448634
dbSNP Clinvar 		13524750 213.77 C T PASS 0/1 27 None None None None None None None None None None
View filtered_merged_a00k Y rs111757995
dbSNP Clinvar 		13524719 368.77 C T PASS 0/1 78 None None None None None None None None None None
View filtered_merged_a00k Y rs77663237
dbSNP Clinvar 		13524507 139.77 C T PASS 0/1 24 None None None None None None None None None SLC9B1P1|0.002112226|90.7%
View filtered_merged_a00k Y rs371829986
dbSNP Clinvar 		9384191 979.77 G C PASS 1/1 27 None None None None None None None None None FAM197Y1|0.002917484|88.79%
View filtered_merged_a00k Y rs79788321
dbSNP Clinvar 		21154603 306.77 A C PASS 0/1 35 None None None None None None None None None None
View filtered_merged_a00k Y rs17855271
dbSNP Clinvar 		21154569 148.77 A G PASS 0/1 41 None None None None None None None None None None
View filtered_merged_a00k Y rs13447352
dbSNP Clinvar 		22749853 318.77 A C PASS 1/1 10 None None None 0.06164 0.06164 None None None None None None EIF1AY|0.002934801|88.75%
View filtered_merged_a00k Y rs10465460
dbSNP Clinvar 		21154466 1551.77 T A PASS 0/1 106 None None None None None None None None None None
View filtered_merged_a00k Y rs52812045
dbSNP Clinvar 		21154426 920.77 G A PASS 0/1 120 None None None None None None None None None None
View filtered_merged_a00k Y rs10465459
dbSNP Clinvar 		21154323 1019.77 G A PASS 0/1 54 None None None None None None None None None None
View filtered_merged_a00k Y rs2032658
dbSNP Clinvar 		15581983 412.77 G A PASS 1/1 14 None None None 0.73398 0.73400 0.47114 None None None None None None UTY|0.031242743|68.89%
View filtered_merged_a00k Y rs2032636
dbSNP Clinvar 		15027529 612.77 T G PASS 1/1 17 None None None 0.98459 0.98460 0.03193 None None None None None None DDX3Y|0.016183527|76.33%
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