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Genes at Omim

APC, AXIN2, BARD1, BRCA1, BRCA2, BRIP1, BUB1B, CDH1, DDB2, ERCC2, ERCC4, ERCC5, FANCA, FANCD2, FANCE, FANCI, FLCN, HNF1A, JAK2, KIT, MC1R, MEN1, MET, MLH3, MSR1, NBN, PMS2, POLD1, POLE, POT1, PRSS1, PTCH2, RAD50, RET, SDHA, SDHB, SDHD, SLC45A2, SLX4, SMARCB1, SPRED1, TSC2, XPC,
APC Adenoma, periampullary, somatic (3)
Adenomatous polyposis coli, 175100 (3)
Gardner syndrome, 175100 (3)
Gastric cancer, somatic, 613659 (3)
Brain tumor-polyposis syndrome 2, 175100 (3)
Hepatoblastoma, somatic, 114550 (3)
Colorectal cancer, somatic, 114500 (3)
Desmoid disease, hereditary, 135290 (3)
AXIN2 Colorectal cancer, somatic, 114500 (3)
Oligodontia-colorectal cancer syndrome, 608615 (3)
BARD1 {Breast cancer, susceptibility to}, 114480 (3)
BRCA1 Fanconi anemia, complementation group S, 617883 (3)
{Pancreatic cancer, susceptibility to, 4}, 614320 (3)
{Breast-ovarian cancer, familial, 1}, 604370 (3)
BRCA2 Fanconi anemia, complementation group D1, 605724 (3)
{Glioblastoma 3}, 613029 (3)
{Medulloblastoma}, 155255 (3)
{Pancreatic cancer 2}, 613347 (3)
{Prostate cancer}, 176807 (3)
Wilms tumor, 194070 (3)
{Breast cancer, male, susceptibility to}, 114480 (3)
{Breast-ovarian cancer, familial, 2}, 612555 (3)
BRIP1 Fanconi anemia, complementation group J, 609054 (3)
{Breast cancer, early-onset, susceptibility to}, 114480 (3)
BUB1B Colorectal cancer, somatic, 114500 (3)
Mosaic variegated aneuploidy syndrome 1, 257300 (3)
[Premature chromatid separation trait], 176430 (3)
CDH1 Gastric cancer, hereditary diffuse, with or without cleft lip and/or palate, 137215 (3)
Blepharocheilodontic syndrome 1, 119580 (3)
Endometrial carcinoma, somatic, 608089 (3)
{Prostate cancer, susceptibility to}, 176807 (3)
Ovarian cancer, somatic, 167000 (3)
{Breast cancer, lobular}, 114480 (3)
DDB2 Xeroderma pigmentosum, group E, DDB-negative subtype, 278740 (3)
ERCC2 ?Cerebrooculofacioskeletal syndrome 2, 610756 (3)
Trichothiodystrophy 1, photosensitive, 601675 (3)
Xeroderma pigmentosum, group D, 278730 (3)
ERCC4 Fanconi anemia, complementation group Q, 615272 (3)
?XFE progeroid syndrome, 610965 (3)
Xeroderma pigmentosum, group F, 278760 (3)
Xeroderma pigmentosum, type F/Cockayne syndrome, 278760 (3)
ERCC5 Cerebrooculofacioskeletal syndrome 3, 616570 (3)
Xeroderma pigmentosum, group G, 278780 (3)
Xeroderma pigmentosum, group G/Cockayne syndrome, 278780 (3)
FANCA Fanconi anemia, complementation group A, 227650 (3)
FANCD2 Fanconi anemia, complementation group D2, 227646 (3)
FANCE Fanconi anemia, complementation group E, 600901 (3)
FANCI Fanconi anemia, complementation group I, 609053 (3)
FLCN Birt-Hogg-Dube syndrome, 135150 (3)
Colorectal cancer, somatic, 114500 (3)
Pneumothorax, primary spontaneous, 173600 (3)
Renal carcinoma, chromophobe, somatic, 144700 (3)
HNF1A Hepatic adenoma, somatic, 142330 (3)
Diabetes mellitus, insulin-dependent, 20, 612520 (3)
MODY, type III, 600496 (3)
Renal cell carcinoma, 144700 (3)
{Diabetes mellitus, insulin-dependent}, 222100 (3)
{Diabetes mellitus, noninsulin-dependent, 2}, 125853 (3)
JAK2 Leukemia, acute myeloid, somatic, 601626 (3)
Erythrocytosis, somatic, 133100 (3)
Myelofibrosis, somatic, 254450 (3)
Polycythemia vera, somatic, 263300 (3)
Thrombocythemia 3, 614521 (3)
{Budd-Chiari syndrome, somatic}, 600880 (3)
KIT Gastrointestinal stromal tumor, familial, 606764 (3)
Germ cell tumors, somatic, 273300 (3)
Leukemia, acute myeloid, 601626 (3)
Mastocytosis, cutaneous, 154800 (3)
Mastocytosis, systemic, somatic, 154800 (3)
Piebaldism, 172800 (3)
MC1R {Melanoma, cutaneous malignant, 5}, 613099 (3)
{UV-induced skin damage}, 266300 (3)
[Analgesia from kappa-opioid receptor agonist, female-specific], 613098 (3)
[Skin/hair/eye pigmentation 2, blond hair/fair skin], 266300 (3)
[Skin/hair/eye pigmentation 2, red hair/fair skin], 266300 (3)
{Albinism, oculocutaneous, type II, modifier of}, 203200 (3)
MEN1 Adrenal adenoma, somatic (3)
Angiofibroma, somatic (3)
Carcinoid tumor of lung (3)
Lipoma, somatic (3)
Multiple endocrine neoplasia 1, 131100 (3)
Parathyroid adenoma, somatic (3)
MET Hepatocellular carcinoma, childhood type, somatic, 114550 (3)
{Osteofibrous dysplasia, susceptibility to}, 607278 (3)
?Deafness, autosomal recessive 97, 616705 (3)
Renal cell carcinoma, papillary, 1, familial and somatic, 605074 (3)
MLH3 Colorectal cancer, hereditary nonpolyposis, type 7, 614385 (3)
Colorectal cancer, somatic, 114500 (3)
{Endometrial cancer, susceptibility to}, 608089 (3)
MSR1 Barrett esophagus/esophageal adenocarcinoma, 614266 (3)
NBN Aplastic anemia, 609135 (3)
Leukemia, acute lymphoblastic, 613065 (3)
Nijmegen breakage syndrome, 251260 (3)
PMS2 Colorectal cancer, hereditary nonpolyposis, type 4, 614337 (3)
Mismatch repair cancer syndrome, 276300 (3)
POLD1 Mandibular hypoplasia, deafness, progeroid features, and lipodystrophy syndrome, 615381 (3)
{Colorectal cancer, susceptibility to, 10}, 612591 (3)
POLE IMAGE-I syndrome, 618336 (3)
FILS syndrome, 615139 (3)
{Colorectal cancer, susceptibility to, 12}, 615083 (3)
POT1 {Glioma susceptibility 9}, 616568 (3)
{Melanoma, cutaneous malignant, susceptibility to, 10}, 615848 (3)
PRSS1 Pancreatitis, hereditary, 167800 (3)
Trypsinogen deficiency, 614044 (1)
PTCH2 Basal cell carcinoma, somatic, 605462 (3)
Basal cell nevus syndrome, 109400 (3)
Medulloblastoma, somatic, 155255 (3)
RAD50 Nijmegen breakage syndrome-like disorder, 613078 (3)
RET {Hirschsprung disease, protection against}, 142623 (3)
{Hirschsprung disease, susceptibility to, 1}, 142623 (3)
Central hypoventilation syndrome, congenital, 209880 (3)
Medullary thyroid carcinoma, 155240 (3)
Multiple endocrine neoplasia IIA, 171400 (3)
Multiple endocrine neoplasia IIB, 162300 (3)
Pheochromocytoma, 171300 (3)
SDHA Cardiomyopathy, dilated, 1GG, 613642 (3)
Leigh syndrome, 256000 (3)
Mitochondrial respiratory chain complex II deficiency, 252011 (3)
Paragangliomas 5, 614165 (3)
SDHB Gastrointestinal stromal tumor, 606764 (3)
Paraganglioma and gastric stromal sarcoma, 606864 (3)
Paragangliomas 4, 115310 (3)
Pheochromocytoma, 171300 (3)
SDHD Mitochondrial complex II deficiency, 252011 (3)
Paraganglioma and gastric stromal sarcoma, 606864 (3)
Paragangliomas 1, with or without deafness, 168000 (3)
Pheochromocytoma, 171300 (3)
SLC45A2 Albinism, oculocutaneous, type IV, 606574 (3)
[Skin/hair/eye pigmentation 5, black/nonblack hair], 227240 (3)
[Skin/hair/eye pigmentation 5, dark/fair skin], 227240 (3)
[Skin/hair/eye pigmentation 5, dark/light eyes], 227240 (3)
SLX4 Fanconi anemia, complementation group P, 613951 (3)
SMARCB1 Coffin-Siris syndrome 3, 614608 (3)
{Rhabdoid tumor predisposition syndrome 1}, 609322 (3)
{Schwannomatosis-1, susceptibility to}, 162091 (3)
Rhabdoid tumors, somatic, 609322 (3)
SPRED1 Legius syndrome, 611431 (3)
TSC2 Lymphangioleiomyomatosis, somatic, 606690 (3)
?Focal cortical dysplasia, type II, somatic, 607341 (3)
Tuberous sclerosis-2, 613254 (3)
XPC Xeroderma pigmentosum, group C, 278720 (3)

Genes at Clinical Genomics Database

APC, AXIN2, BARD1, BRCA1, BRCA2, BRIP1, BUB1B, CDH1, DDB2, ERCC2, ERCC4, ERCC5, FANCA, FANCD2, FANCE, FANCI, FANCL, FLCN, HNF1A, JAK2, KIT, MC1R, MEN1, MET, MLH3, MSR1, NBN, PMS2, POLD1, POLE, POT1, PRSS1, PTCH2, RAD50, RET, SDHA, SDHB, SDHD, SLC45A2, SLX4, SMARCB1, SPRED1, TSC2, XPC,
APC Familial adenomatous polyposis
Gardner syndrome
Desmoid disease, hereditary
AXIN2 Oligodontia-colorectal cancer syndrome
BARD1 Breast cancer, susceptibility to
BRCA1 Breast-ovarian cancer, familial, susceptibility to, 1
Pancreatic cancer, susceptibility to, 4
BRCA2 Breast-ovarian cancer, familial, susceptibility to
Pancreatic cancer, susceptibility to, 2
Glioma susceptibility 3
Fanconi anemia, complementation group D1
Wilms tumor
Medulloblastoma
BRIP1 Breast cancer
Fanconi anemia, complementation group J
BUB1B Mosaic variegated aneuploidy syndrome
Premature chromatid separation trait
CDH1 CDH1-related cancer
DDB2 Xeroderma pigmentosum, group E
ERCC2 Trichothiodystrophy 1, photosensitive
Xeroderma pigmentosum, group D
ERCC4 Fanconi anemia, complementation group Q
Xeroderma pigmentosum, group F
ERCC5 Xeroderma pigmentosum, group G
Xeroderma pigmentosum, group G/Cockayne syndrome
FANCA Fanconi anemia, complementation group A
FANCD2 Fanconi anemia, complementation group D2
FANCE Fanconi anemia, complementation group E
FANCI Fanconi anemia, complementation group I
FANCL Fanconi anemia type L
FLCN Birt-Hogg-Dube syndrome
Pneumothorax, primary spontaneous
HNF1A Renal cell carcinoma, nonpapillary clear cell
Liver adenomatosis
Maturity onset diabetes of the young, type III
JAK2 Thrombocythemia 3
KIT Gastrointestinal stromal tumor
MC1R Increased analgesia from kappa-opioid receptor agonist, female specific
MEN1 Multiple endocrine neoplasia type I
Hyperparathyroidism, familial primary
MET Renal cell carcinoma, papillary
Deafness, autosomal recessive 97
MLH3 Colorectal cancer, hereditary nonpolyposis type 7
Endometrial carcinoma
MSR1 Barrett esophagus/esophageal adenocarcinoma
Prostate cancer
NBN Breast cancer, susceptibility to
Nijmegen breakage syndrome
PMS2 Colorectal cancer, hereditary nonpolyposis type 4
Mismatch repair cancer syndrome
POLD1 Colorectal cancer, susceptibility to, 10
POLE Colorectal cancer, susceptibility to, 12
Facial dysmorphism, immunodeficiency, livedo, and short stature syndrome (FILS syndrome)
POT1 Glioma susceptibility 9
Melanoma, cutaneous malignant, susceptibility to 10
PRSS1 Pancreatitis, hereditary
PTCH2 Basal cell nevus syndrome
RAD50 Breast cancer, susceptibility to
RET Central hypoventilation syndrome, congenital
Multiple endocrine neoplasia, type IIA
Multiple endocrine neoplasia IIB
Medullary thyroid carcinoma, familial
Pheochromocytoma
Hirschsprung disease, susceptibility to 1
SDHA Paragangliomas 5
Gastrointestinal stromal tumors
Cardiomyopathy, dilated, 1GG
Leigh syndrome/Mitochondrial respiratory chain complex II deficiency
SDHB Cowden-like syndrome
Paraganglioma and gastric stromal sarcoma
Gastrointestinal stromal tumor
Pheochromocytoma
Paragangliomas 4
SDHD Cowden syndrome 3
Paraganglioma and gastric stromal sarcoma
Pheochromocytoma
Paragangliomas 1
Carcinoid tumors, intestinal
SLC45A2 Oculocutaneous albinism, type IV
Skin/hair/eye pigmentation 5
SLX4 Fanconi anemia type P
SMARCB1 Schwannomatosis
Rhabdoid tumor predisposition syndrome
SPRED1 Legius syndrome
TSC2 Tuberous sclerosis 2
Lymphangioleiomyomatosis
XPC Xeroderma pigmentosum, group C

Genes at HGMD

Summary

Number of Variants: 86
Number of Genes: 46

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  • Page 1 of 1

APC

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 5 rs42427
dbSNP Clinvar
112176325 535.139 G A PASS 0/1 238 SYNONYMOUS_CODING LOW None 0.66673 0.66670 0.40987 None None None None None None APC|0.952088564|2.19%
View 16on271_ionxpress_012 5 rs866006
dbSNP Clinvar
112176559 343.005 T G PASS 0/1 153 SYNONYMOUS_CODING LOW None 0.66693 0.66690 0.41201 None None None None None None APC|0.952088564|2.19%
View 16on271_ionxpress_012 5 rs465899
dbSNP Clinvar
112177171 339.048 G A PASS 0/1 141 SYNONYMOUS_CODING LOW None 0.66653 0.66650 0.41309 None None None None None None APC|0.952088564|2.19%
View 16on271_ionxpress_012 5 rs351771
dbSNP Clinvar
112164561 107.274 G A PASS 0/1 45 SYNONYMOUS_CODING LOW None 0.66613 0.66610 0.41357 None None None None None None APC|0.952088564|2.19%

AXIN2

Omim - GeneCards - NCBI
Options Individual Chr
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 17 rs9915936
dbSNP Clinvar
63533789 2916.35 T C PASS 1/1 307 SYNONYMOUS_CODING LOW None 0.90974 0.90970 0.08912 None None None None None None AXIN2|0.837375797|4.92%
View 16on271_ionxpress_012 17 rs35415678
dbSNP Clinvar
63532517 445.795 G A PASS 0/1 299 SYNONYMOUS_CODING LOW None 0.16434 0.16430 0.09666 None None None None None None AXIN2|0.837375797|4.92%
View 16on271_ionxpress_012 17 rs2240307
dbSNP Clinvar
63554307 1144.83 A G PASS 0/1 572 SYNONYMOUS_CODING LOW None 0.07867 0.07867 0.02837 None None None None None None AXIN2|0.837375797|4.92%

BARD1

Omim - GeneCards - NCBI
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RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 2 rs2070096
dbSNP Clinvar
215645545 859.02 C G PASS 0/1 389 SYNONYMOUS_CODING LOW None 0.19030 0.19030 0.20345 None None None None None None BARD1|0.230178617|33.35%

BRCA1

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 17 rs1799949
dbSNP Clinvar
41245466 909.796 G A PASS 0/1 455 SYNONYMOUS_CODING LOW None 0.33646 0.33650 0.29568 None None None None None None BRCA1|0.986984945|1.2%

BRCA2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 13 rs1799955
dbSNP Clinvar
32929232 914.267 A G PASS 0/1 391 SYNONYMOUS_CODING LOW None 0.23263 0.23260 0.21136 None None None None None None None
View 16on271_ionxpress_012 13 rs206075
dbSNP Clinvar
32913055 327.279 A G PASS 0/1 149 SYNONYMOUS_CODING LOW None 0.97404 0.97400 0.02423 None None None None None None None
View 16on271_ionxpress_012 13 rs206076
dbSNP Clinvar
32915005 395.105 G C PASS 0/1 222 SYNONYMOUS_CODING LOW None 0.00040 0.97360 0.02453 None None None None None None None
View 16on271_ionxpress_012 13 rs114446594
dbSNP Clinvar
32893377 587.836 T G PASS 0/1 352 SYNONYMOUS_CODING LOW None 0.00300 0.00300 0.00231 None None None None None None None
View 16on271_ionxpress_012 13 rs1801406
dbSNP Clinvar
32911888 1103.33 A G PASS 0/1 487 SYNONYMOUS_CODING LOW None 0.26677 0.26680 0.27984 None None None None None None None

BRIP1

Omim - GeneCards - NCBI
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RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 17 rs4986763
dbSNP Clinvar
59760996 236.684 A G PASS 0/1 101 SYNONYMOUS_CODING LOW None 0.62081 0.62080 0.39396 None None None None None None BRIP1|0.463785702|17.47%
View 16on271_ionxpress_012 17 rs4986765
dbSNP Clinvar
59763465 978.457 T C PASS 1/1 103 SYNONYMOUS_CODING LOW None 0.81510 0.81510 0.26572 None None None None None None BRIP1|0.463785702|17.47%

BUB1B

Omim - GeneCards - NCBI
Options Individual Chr
RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 15 rs1801389
dbSNP Clinvar
40462780 237.412 G A PASS 0/1 63 SYNONYMOUS_CODING LOW None 0.08746 0.08746 0.14370 None None None None None None BUB1B|0.539848425|14.21%

CDH1

Omim - GeneCards - NCBI
Options Individual Chr
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 16 rs1801552
dbSNP Clinvar
68857441 1283.36 T C,G PASS 1/1 137 SYNONYMOUS_CODING LOW None 0.71865 0.71870 0.28386 None None None None None None CDH1|0.998372534|0.51%
View 16on271_ionxpress_012 16 rs33964119
dbSNP Clinvar
68862165 164.538 C T PASS 0/1 123 SYNONYMOUS_CODING LOW None 0.05451 0.05451 0.03755 None None None None None None CDH1|0.998372534|0.51%

DDB2

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 11 rs326212
dbSNP Clinvar
47238522 2123.68 T C PASS 1/1 222 SYNONYMOUS_CODING LOW None 0.99421 0.99420 0.00469 None None None None None None None

ERCC2

Omim - GeneCards - NCBI
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RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 19 rs238406
dbSNP Clinvar
45868309 3005.78 T G PASS 1/1 316 SYNONYMOUS_CODING LOW None 0.63618 0.63620 0.33746 None None None None None None None

ERCC4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 16 rs1799801
dbSNP Clinvar
14041958 725.401 T C PASS 0/1 367 SYNONYMOUS_CODING LOW None 0.24121 0.24120 0.25319 None None None None None None ERCC4|0.251241672|31.43%

ERCC5

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
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Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 13 . 103528244 239.193 G A PASS 0/1 111 SYNONYMOUS_CODING LOW None None None None None None None ERCC5|0.093186458|52.57%
View 16on271_ionxpress_012 13 rs4150316
dbSNP Clinvar
103514939 597.483 C T PASS 0/1 220 SYNONYMOUS_CODING LOW None 0.03594 0.03594 0.03906 None None None None None None BIVM-ERCC5|0.069043086|57.72%,ERCC5|0.093186458|52.57%
View 16on271_ionxpress_012 13 rs1047768
dbSNP Clinvar
103504517 85.7419 T C PASS 0/1 32 SYNONYMOUS_CODING LOW None 0.49301 0.49300 0.38821 None None None None None None BIVM-ERCC5|0.069043086|57.72%,ERCC5|0.093186458|52.57%

FANCA

Omim - GeneCards - NCBI
Options Individual Chr
RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 16 rs11649210
dbSNP Clinvar
89807233 232.107 C G PASS 0/1 99 SYNONYMOUS_CODING LOW None 0.13798 0.13800 0.10796 None None None None None None ZNF276|0.058345377|60.32%,FANCA|0.007695026|82.85%
View 16on271_ionxpress_012 16 rs1800358
dbSNP Clinvar
89809319 160.925 T C PASS 0/1 72 SYNONYMOUS_CODING LOW None 0.15755 0.15750 0.13196 None None None None None None FANCA|0.007695026|82.85%

FANCD2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 3 rs34046352
dbSNP Clinvar
10085536 534.387 A G PASS 0/1 338 SYNONYMOUS_CODING LOW None None None None None None None None
View 16on271_ionxpress_012 3 rs9809716
dbSNP Clinvar
10106515 173.644 T C PASS 0/1 85 SYNONYMOUS_CODING LOW None 0.02756 0.02756 0.03199 None None None None None None None
View 16on271_ionxpress_012 3 rs35594075
dbSNP Clinvar
10115043 360.971 C T PASS 0/1 199 SYNONYMOUS_CODING LOW None 0.03155 0.03155 0.03675 None None None None None None None
View 16on271_ionxpress_012 3 rs2272125
dbSNP Clinvar
10138069 145.676 T G PASS 0/1 62 SYNONYMOUS_CODING LOW None 0.24221 0.24220 0.26857 None None None None None None FANCD2OS|0.275385331|29.49%

FANCE

Omim - GeneCards - NCBI
Options Individual Chr
RsId
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 6 rs4713867
dbSNP Clinvar
35423662 786.12 A C PASS 1/1 83 SYNONYMOUS_CODING LOW None 0.77796 0.77800 0.26434 None None None None None None None

FANCI

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 15 rs7183618
dbSNP Clinvar
89838236 1878.87 G A PASS 1/1 195 SYNONYMOUS_CODING LOW None 0.98083 0.98080 0.03993 None None None None None None FANCI|0.35466511|23.8%

FANCL

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 2 rs848291
dbSNP Clinvar
58388696 1277.96 A G PASS 1/1 134 SYNONYMOUS_CODING LOW None 0.70647 0.70650 0.29591 None None None None None None FANCL|0.67774308|9.14%

FLCN

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 17 rs113938514
dbSNP Clinvar
17125868 1027.15 T A PASS 0/1 466 SYNONYMOUS_CODING LOW None 0.02776 0.02776 0.03329 None None None None None None FLCN|0.129066067|46.02%

HNF1A

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 12 rs1169289
dbSNP Clinvar
121416622 208.316 C G PASS 0/1 75 SYNONYMOUS_CODING LOW None 0.42851 0.42850 0.41748 None None None None None None HNF1A|0.210728001|35.48%
View 16on271_ionxpress_012 12 rs56348580
dbSNP Clinvar
121432117 440.655 G C PASS 0/1 347 SYNONYMOUS_CODING LOW None 0.18111 0.18110 0.23577 None None None None None None HNF1A|0.210728001|35.48%

JAK2

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 9 rs2230728
dbSNP Clinvar
5077517 585.881 T C PASS 0/1 254 SYNONYMOUS_CODING LOW None 0.04573 0.04573 0.03961 None None None None None None None
View 16on271_ionxpress_012 9 rs2230722
dbSNP Clinvar
5050706 1521.37 C T PASS 0/1 719 SYNONYMOUS_CODING LOW None 0.35823 0.35820 0.35645 None None None None None None None
View 16on271_ionxpress_012 9 rs2230724
dbSNP Clinvar
5081780 1452.36 G A PASS 1/1 157 SYNONYMOUS_CODING LOW None 0.61681 0.61680 0.37575 None None None None None None None

KIT

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 4 rs56288823
dbSNP Clinvar
55604639 289.452 C T PASS 0/1 77 SYNONYMOUS_CODING LOW None 0.01757 0.01757 0.02099 None None None None None None KIT|0.689603428|8.78%

MC1R

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 16 rs2228478
dbSNP Clinvar
89986608 328.633 A G PASS 0/1 155 SYNONYMOUS_CODING LOW None 0.25899 0.25900 0.20810 None None None None None None MC1R|0.013226594|78.34%,TUBB3|0.052450362|61.93%

MEN1

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 11 rs540012
dbSNP Clinvar
64572557 280.985 A G PASS 0/1 131 SYNONYMOUS_CODING LOW None 0.97604 0.97600 0.02385 None None None None None None MEN1|0.661753232|9.63%

MET

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 7 rs35775721
dbSNP Clinvar
116339672 874.323 C T PASS 0/1 454 SYNONYMOUS_CODING LOW None 0.08846 0.08846 0.06966 None None None None None None MET|0.987477755|1.18%

MLH3

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 14 rs28756980
dbSNP Clinvar
75515693 676.43 C T PASS 0/1 383 SYNONYMOUS_CODING LOW None 0.02596 0.02596 0.02076 None None None None None None MLH3|0.168045017|40.57%

MSR1

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 8 rs4338104
dbSNP Clinvar
15978063 3208.25 C T PASS 1/1 335 SYNONYMOUS_CODING LOW None 0.99740 0.99740 0.00254 None None None None None None None

NBN

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 8 rs709816
dbSNP Clinvar
90967711 2217.29 A G PASS 1/1 230 SYNONYMOUS_CODING LOW None 0.60863 0.60860 0.49031 None None None None None None NBN|0.433060118|19.03%

PMS2

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 7 rs1805319
dbSNP Clinvar
6036980 125.837 G C PASS 1/1 14 SYNONYMOUS_CODING LOW None 0.83127 0.83130 0.17623 None None None None None None None

POLD1

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 19 rs20582
dbSNP Clinvar
50905042 139.513 G A PASS 0/1 38 SYNONYMOUS_CODING LOW None 0.01218 0.18890 0.14445 None None None None None None POLD1|0.029204682|69.77%

POLE

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 12 rs5745022
dbSNP Clinvar
133208979 523.613 T C PASS 0/1 323 SYNONYMOUS_CODING LOW None 0.69908 0.69910 0.35730 None None None None None None POLE|0.9999901|0.06%
View 16on271_ionxpress_012 12 rs5744777
dbSNP Clinvar
133249753 449.442 G A PASS 0/1 217 SYNONYMOUS_CODING LOW None 0.00539 0.00539 0.00692 None None None None None None POLE|0.9999901|0.06%
View 16on271_ionxpress_012 12 rs5744857
dbSNP Clinvar
133236000 5092.37 C T PASS 1/1 529 SYNONYMOUS_CODING LOW None 0.60543 0.60540 0.47755 None None None None None None POLE|0.9999901|0.06%
View 16on271_ionxpress_012 12 rs5744944
dbSNP Clinvar
133219831 1415.24 T C PASS 1/1 151 SYNONYMOUS_CODING LOW None 0.60523 0.60520 0.47763 None None None None None None POLE|0.9999901|0.06%

POT1

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 7 rs17147565
dbSNP Clinvar
124464037 369.206 T G PASS 0/1 199 SYNONYMOUS_CODING LOW None 0.02875 0.02875 0.03462 None None None None None None POT1|0.365444056|23.02%

PRSS1

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 7 rs6666
dbSNP Clinvar
142460313 620.631 T C PASS 0/1 260 SYNONYMOUS_CODING LOW None 0.39657 0.39660 None None None None None None PRSS1|0.013065246|78.46%
View 16on271_ionxpress_012 7 rs6667
dbSNP Clinvar
142460865 34.0805 T C PASS 0/1 12 SYNONYMOUS_CODING LOW None 0.39377 0.39380 None None None None None None PRSS1|0.013065246|78.46%

PTCH2

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 1 rs7525308
dbSNP Clinvar
45293518 5848.4 A G PASS 1/1 610 SYNONYMOUS_CODING LOW None 0.44549 0.44550 0.42442 None None None None None None PTCH2|0.195643627|37.2%

RAD50

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 5 rs34147298
dbSNP Clinvar
131931320 777.743 C T PASS 0/1 318 SYNONYMOUS_CODING LOW None 0.02656 0.02656 0.02814 None None None None None None RAD50|0.859950096|4.46%

RET

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 10 rs1800863
dbSNP Clinvar
43615633 438.099 C G PASS 0/1 203 SYNONYMOUS_CODING LOW None 0.17252 0.17250 0.16095 None None None None None None None
View 16on271_ionxpress_012 10 rs1800861
dbSNP Clinvar
43613843 3727.7 G T PASS 1/1 384 SYNONYMOUS_CODING LOW None 0.71246 0.71250 0.19737 None None None None None None None
View 16on271_ionxpress_012 10 rs1800860
dbSNP Clinvar
43606687 1074.65 A G PASS 1/1 113 SYNONYMOUS_CODING LOW None 0.77516 0.77520 0.25142 None None None None None None None
View 16on271_ionxpress_012 10 rs1800858
dbSNP Clinvar
43595968 1422.04 A G PASS 1/1 147 SYNONYMOUS_CODING LOW None 0.75359 0.75360 0.19084 None None None None None None None

SDHA

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 5 rs13070
dbSNP Clinvar
251541 2472.88 A G PASS 1/1 261 SYNONYMOUS_CODING LOW None 0.24840 0.24840 0.26957 None None None None None None None
View 16on271_ionxpress_012 5 rs6961
dbSNP Clinvar
256472 279.431 G A PASS 1/1 29 SYNONYMOUS_CODING LOW None 0.33526 0.33530 0.27826 None None None None None None None
View 16on271_ionxpress_012 5 rs10039029,rs1139449
dbSNP Clinvar
251469 2453.01 G A PASS 1/1 258 SYNONYMOUS_CODING LOW None 0.24840 0.24840 3.45 None None rs876659595 4 Hereditary_cancer-predisposing_syndrome 1 None
View 16on271_ionxpress_012 5 rs35277230
dbSNP Clinvar
235364 216.56 C T PASS 0/1 121 SYNONYMOUS_CODING LOW None 0.11362 0.11360 0.11233 None None None None None None None
View 16on271_ionxpress_012 5 rs1041949
dbSNP Clinvar
233734 401.899 C G PASS 1/1 43 SYNONYMOUS_CODING LOW None 0.25779 0.25780 0.28241 None None None None None None None
View 16on271_ionxpress_012 5 rs1126417
dbSNP Clinvar
231111 2192.12 T C PASS 1/1 228 SYNONYMOUS_CODING LOW None 0.65336 0.65340 0.23131 None None None None None None None
View 16on271_ionxpress_012 5 rs2115272
dbSNP Clinvar
228362 2378.01 T C PASS 1/1 253 SYNONYMOUS_CODING LOW None 0.24740 0.24740 0.27164 None None None None None None None
View 16on271_ionxpress_012 5 rs1139424
dbSNP Clinvar
224633 2212.65 A G PASS 1/1 234 SYNONYMOUS_CODING LOW None 0.24002 0.24000 0.25785 None None None None None None None

SDHB

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View 16on271_ionxpress_012 1 rs2746462
dbSNP Clinvar
17380497 1338.32 G T PASS 1/1 139 SYNONYMOUS_CODING LOW None 0.95707 0.95710 0.04853 None None None None None None SDHB|0.616900215|11.22%

SDHD

Omim - GeneCards - NCBI
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View 16on271_ionxpress_012 11 rs9919552
dbSNP Clinvar
111959625 381.976 C T PASS 0/1 167 SYNONYMOUS_CODING LOW None 0.11342 0.11340 0.12011 None None None None None None SDHD|0.174827429|39.67%
View 16on271_ionxpress_012 11 . 111957658 496.423 C T PASS 0/1 207 SYNONYMOUS_CODING LOW None None None None None None None SDHD|0.174827429|39.67%

SLC45A2

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 5 rs2287949
dbSNP Clinvar
33954511 4117.26 T C PASS 1/1 428 SYNONYMOUS_CODING LOW None 0.83307 0.83310 0.04075 None None None None None None SLC45A2|0.156382322|42.11%

SLX4

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 16 rs28516461
dbSNP Clinvar
3656557 1186.04 G A PASS 0/1 515 SYNONYMOUS_CODING LOW None 0.13179 0.13180 0.09512 None None None None None None SLX4|0.005065582|85.73%
View 16on271_ionxpress_012 16 rs3810812
dbSNP Clinvar
3639139 3046.05 A G PASS 1/1 317 SYNONYMOUS_CODING LOW None 0.73962 0.73960 0.37340 None None None None None None SLX4|0.005065582|85.73%
View 16on271_ionxpress_012 16 rs8061528
dbSNP Clinvar
3656482 598.746 C T PASS 0/1 282 SYNONYMOUS_CODING LOW None 0.23083 0.23080 0.21895 None None None None None None SLX4|0.005065582|85.73%

SMARCB1

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 22 rs2229354
dbSNP Clinvar
24167513 698.958 G A PASS 0/1 367 SYNONYMOUS_CODING LOW None 0.10523 0.10520 0.10649 None None None None None None None

SPRED1

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 15 rs3751526
dbSNP Clinvar
38643574 1442.8 T C PASS 0/1 730 SYNONYMOUS_CODING LOW None 0.79952 0.79950 0.17462 None None None None None None None
View 16on271_ionxpress_012 15 rs7182445
dbSNP Clinvar
38614525 1283.14 G A PASS 0/1 565 SYNONYMOUS_CODING LOW None 0.80012 0.80010 0.17416 None None None None None None None

STK36

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 2 rs58753698
dbSNP Clinvar
219563496 522.365 T C PASS 0/1 232 SYNONYMOUS_CODING LOW None 0.05970 0.05970 0.06920 None None None None None None STK36|0.159611866|41.62%
View 16on271_ionxpress_012 2 rs73079060
dbSNP Clinvar
219553503 379.575 T C PASS 0/1 164 SYNONYMOUS_CODING LOW None 0.05931 0.05931 0.06905 None None None None None None STK36|0.159611866|41.62%

SYT6

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 1 rs17032441
dbSNP Clinvar
114680540 865.584 C T PASS 0/1 454 SYNONYMOUS_CODING LOW None 0.20767 0.20770 0.20398 None None None None None None SYT6|0.295725344|27.98%

TSC2

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 16 rs1748
dbSNP Clinvar
2138269 311.427 T C PASS 0/1 112 SYNONYMOUS_CODING LOW None 0.27636 0.27640 0.33246 None None None None None None None

XPC

Omim - GeneCards - NCBI
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Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 16on271_ionxpress_012 3 rs2958057
dbSNP Clinvar
14197987 5897.56 A T PASS 1/1 613 SYNONYMOUS_CODING LOW None 1.00000 1.00000 None None None None None None XPC|0.047964422|63.33%
View 16on271_ionxpress_012 3 rs2227998
dbSNP Clinvar
14193889 811.959 C T PASS 0/1 402 SYNONYMOUS_CODING LOW None 0.23542 0.23540 0.26583 None None None None None None XPC|0.047964422|63.33%
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