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VARIANT EFFECT FUNCTIONAL CLASS IMPACT
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EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

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CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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Genes at Omim

ANK2, SLC25A4,
ANK2 Cardiac arrhythmia, ankyrin-B-related, 600919 (3)
Long QT syndrome 4, 600919 (3)
SLC25A4 Mitochondrial DNA depletion syndrome 12A (cardiomyopathic type) AD, 617184 (3)
Mitochondrial DNA depletion syndrome 12B (cardiomyopathic type) AR, 615418 (3)
Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 2, 609283 (3)

Genes at Clinical Genomics Database

ANK2, SLC25A4,
ANK2 Long QT syndrome, 4
Cardiac arrhythmia, ankyrin-B-related
SLC25A4 Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant, 2
Mitochondrial DNA depletion syndrome 12 (cardiomyopathic type)

Genes at HGMD

Summary

Number of Variants: 3
Number of Genes: 3

Export to: CSV
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ANK2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View na12877-rep1_s1 4 rs7689214
dbSNP Clinvar
114067145 2710.75 G A PASS 0/1 234 None None None 0.18411 0.18410 0.36 0.01 None None None None None None ANK2|0.34993042|24.11%

PDLIM3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View na12877-rep1_s1 4 rs4635850
dbSNP Clinvar
186423637 3010.07 G A PASS 0/1 277 SPLICE_SITE_REGION+SYNONYMOUS_CODING LOW None 0.65955 0.65950 0.30332 None None None None None None PDLIM3|0.223331609|34.03%

SLC25A4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View na12877-rep1_s1 4 rs149101873
dbSNP Clinvar
186066373 4039.15 T C PASS 0/1 318 SYNONYMOUS_CODING LOW None 0.00240 0.00240 0.00784 None None None None None None SLC25A4|0.324667207|25.81%
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