SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

AQP7, CD209, CES1, CFH, CFHR1, CFTR, CYP2B6, DDX11, DSPP, F5, FANCD2, HLA-A, HLA-B, HS6ST1, HYDIN, KMT2C, MUC7, NR0B1, PCNT, PRG4, PRSS1, RP1L1, RUNX1, SDHA, SHANK3, TRIOBP, TTN,
AQP7 [Glycerol quantitative trait locus], 614411 (3)
CD209 {HIV type 1, susceptibility to}, 609423 (3)
{Mycobacterium tuberculosis, susceptibility to}, 607948 (3)
{Dengue fever, protection against}, 614371 (3)
CES1 Drug metabolism, altered, CES1-related, 618057 (3)
CFH {Hemolytic uremic syndrome, atypical, susceptibility to, 1}, 235400 (3)
Basal laminar drusen, 126700 (3)
{Macular degeneration, age-related, 4}, 610698 (3)
Complement factor H deficiency, 609814 (3)
CFHR1 {Hemolytic uremic syndrome, atypical, susceptibility to}, 235400 (3)
{Macular degeneration, age-related, reduced risk of}, 603075 (3)
CFTR {Hypertrypsinemia, neonatal} (3)
Congenital bilateral absence of vas deferens, 277180 (3)
Cystic fibrosis, 219700 (3)
{Pancreatitis, hereditary}, 167800 (3)
Sweat chloride elevation without CF (3)
{Bronchiectasis with or without elevated sweat chloride 1, modifier of}, 211400 (3)
CYP2B6 Efavirenz, poor metabolism of, 614546 (3)
{Efavirenz central nervous system toxicity, susceptibility to}, 614546 (3)
DDX11 Warsaw breakage syndrome, 613398 (3)
DSPP Deafness, autosomal dominant 39, with dentinogenesis, 605594 (3)
Dentin dysplasia, type II, 125420 (3)
Dentinogenesis imperfecta, Shields type II, 125490 (3)
Dentinogenesis imperfecta, Shields type III, 125500 (3)
F5 Factor V deficiency, 227400 (3)
{Pregnancy loss, recurrent, susceptibility to, 1}, 614389 (3)
{Stroke, ischemic, susceptibility to}, 601367 (3)
{Thrombophilia, susceptibility to, due to factor V Leiden}, 188055 (3)
Thrombophilia due to activated protein C resistance, 188055 (3)
{Budd-Chiari syndrome}, 600880 (3)
FANCD2 Fanconi anemia, complementation group D2, 227646 (3)
HLA-A {Hypersensitivity syndrome, carbamazepine-induced, susceptibility to}, 608579 (3)
HLA-B {Spondyloarthropathy, susceptibility to, 1}, 106300 (3)
{Stevens-Johnson syndrome, susceptibility to}, 608579 (3)
{Synovitis, chronic, susceptibility to} (3)
{Toxic epidermal necrolysis, susceptibility to}, 608579 (3)
{Abacavir hypersensitivity, susceptibility to} (3)
{Drug-induced liver injury due to flucloxacillin} (3)
HS6ST1 {Hypogonadotropic hypogonadism 15 with or without anosmia}, 614880 (3)
HYDIN Ciliary dyskinesia, primary, 5, 608647 (3)
KMT2C Kleefstra syndrome 2, 617768 (3)
MUC7 {Asthma, protection against}, 600807 (3)
NR0B1 Adrenal hypoplasia, congenital, 300200 (3)
46XY sex reversal 2, dosage-sensitive, 300018 (3)
PCNT Microcephalic osteodysplastic primordial dwarfism, type II, 210720 (3)
PRG4 Camptodactyly-arthropathy-coxa vara-pericarditis syndrome, 208250 (3)
PRSS1 Pancreatitis, hereditary, 167800 (3)
Trypsinogen deficiency, 614044 (1)
RP1L1 Occult macular dystrophy, 613587 (3)
RUNX1 Leukemia, acute myeloid, 601626 (3)
Platelet disorder, familial, with associated myeloid malignancy, 601399 (3)
SDHA Cardiomyopathy, dilated, 1GG, 613642 (3)
Leigh syndrome, 256000 (3)
Mitochondrial respiratory chain complex II deficiency, 252011 (3)
Paragangliomas 5, 614165 (3)
SHANK3 {Schizophrenia 15}, 613950 (3)
Phelan-McDermid syndrome, 606232 (3)
TRIOBP Deafness, autosomal recessive 28, 609823 (3)
TTN Cardiomyopathy, dilated, 1G, 604145 (3)
Cardiomyopathy, familial hypertrophic, 9, 613765 (3)
Muscular dystrophy, limb-girdle, autosomal recessive 10, 608807 (3)
Myopathy, proximal, with early respiratory muscle involvement, 603689 (3)
Salih myopathy, 611705 (3)
Tibial muscular dystrophy, tardive, 600334 (3)

Genes at Clinical Genomics Database

CES1, CFH, CFHR1, CFTR, CYP2B6, CYP4F2, DDX11, DSPP, F5, FANCD2, HLA-A, HLA-B, HS6ST1, NR0B1, PCNT, PRG4, PRSS1, RP1L1, RUNX1, SDHA, SHANK3, TRIOBP, TTN, ZNF480,
CES1 Carboxylesterase 1 deficiency
CFH Hemolytic uremic syndrome, atypical
Complement factor H deficiency
CFHR1 Hemolytic-uremic syndrome, atypical, susceptibility to
CFTR Cystic fibrosis
CYP2B6 Efavirenz, poor metabolism of
CYP4F2 Warfarin metabolism
DDX11 Warsaw breakage syndrome
DSPP Deafness, autosomal dominant, 39, with dentinogenesis imperfecta 1
Dentinogenesis imperfecta, Shields type II
Dentinogenesis imperfecta, Shields type III
Dentin dysplasia, type II
F5 Thrombophilia due to activated protein C resistance
Factor V deficiency
FANCD2 Fanconi anemia, complementation group D2
HLA-A Drug-induced toxicity, susceptibility to
HLA-B Drug-induced toxicity, susceptibility to
HS6ST1 Hypogonadotropic hypogonadism 15, with or without anosmia
NR0B1 Adrenal hypoplasia, congenital
46,XY sex reversal 2
PCNT Microcephalic osteodysplastic primordial dwarfism, type II
PRG4 Camptodactyly-arthropathy-coxa vara-pericarditis syndrome
PRSS1 Pancreatitis, hereditary
RP1L1 Occult macular dystrophy
Retinitis pigmentosa, autosomal recessive
RUNX1 Platelet disorder, familial, with associated myeloid malignancy
SDHA Paragangliomas 5
Gastrointestinal stromal tumors
Cardiomyopathy, dilated, 1GG
Leigh syndrome/Mitochondrial respiratory chain complex II deficiency
SHANK3 Phelan-McDermid syndrome
Schizophrenia
TRIOBP Deafness, autosomal recessive 28
TTN Cardiomyopathy, familial hypertrophic 9
Cardiomyopathy, dilated, 1G
ZNF480 Schizophrenia

Genes at HGMD

Summary

Number of Variants: 405
Number of Genes: 69

Export to: CSV

ANAPC1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 2 rs72936244
dbSNP Clinvar
112615933 155.45 T C LowQD 0/1 119 SYNONYMOUS_CODING LOW None None None None None None None ANAPC1|0.14646446|43.53%
View 15ac02303_s1 genome 2 rs79100806
dbSNP Clinvar
112615888 64.09 C G LowQD 0/1 79 NON_SYNONYMOUS_CODING MODERATE None 0.21 0.00 None None None None None None ANAPC1|0.14646446|43.53%

AQP7

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 9 rs74557595
dbSNP Clinvar
33385287 408.18 T C LowQD 0/1 213 NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION MODERATE None 0.15 0.00 None None None None None None AQP7|0.012677613|78.76%

CD209

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 . 7810448 160.58 T A LowQD 0/1 99 NON_SYNONYMOUS_CODING MODERATE None 0.20 0.00 None None None None None None CD209|0.001091025|94.97%

CES1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 16 rs3826194
dbSNP Clinvar
55862762 483.08 C G LowQD 0/1 266 SYNONYMOUS_CODING LOW None None None None None None None CES1|0.015845795|76.58%
View 15ac02303_s1 genome 16 rs74019278
dbSNP Clinvar
55862720 362.83 T C LowQD 0/1 237 SYNONYMOUS_CODING LOW None None None None None None None CES1|0.015845795|76.58%
View 15ac02303_s1 genome 16 rs3826192
dbSNP Clinvar
55862824 328.33 C T LowQD 0/1 242 NON_SYNONYMOUS_CODING MODERATE None 0.35 0.01 None None None None None None CES1|0.015845795|76.58%
View 15ac02303_s1 genome 16 rs76828834
dbSNP Clinvar
55862717 285.54 T C LowQD 0/1 217 SYNONYMOUS_CODING LOW None None None None None None None CES1|0.015845795|76.58%
View 15ac02303_s1 genome 16 rs3826191
dbSNP Clinvar
55862836 322.7 G A LowQD 0/1 220 SYNONYMOUS_CODING LOW None None None None None None None CES1|0.015845795|76.58%
View 15ac02303_s1 genome 16 rs3826193
dbSNP Clinvar
55862791 512.98 T C LowQD 0/1 274 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None CES1|0.015845795|76.58%

CFH

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 1 rs61822181
dbSNP Clinvar
196712586 178.18 C T LowQD 0/1 101 SYNONYMOUS_CODING LOW None None None None None None None CFH|0.021522909|73.44%

CFHR1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 1 rs388862
dbSNP Clinvar
196797292 234.24 G C LowQD 0/1 175 NON_SYNONYMOUS_CODING MODERATE None 0.49 0.00 None None None None None None CFHR1|0.001540136|92.58%,CFHR2|0.000734452|97.12%

CFTR

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 7 rs201880593
dbSNP Clinvar
117188750 167.41 C T LowQD 0/1 198 NON_SYNONYMOUS_CODING MODERATE None 0.70 0.24 None None None None None None CFTR|0.947527653|2.33%
View 15ac02303_s1 genome 7 rs201434579
dbSNP Clinvar
117188797 125.65 A G LowQD 0/1 201 NON_SYNONYMOUS_CODING MODERATE None 0.19 0.00 None None None None None None CFTR|0.947527653|2.33%

CGB1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 rs62126040
dbSNP Clinvar
49539560 241.49 T C LowQD 0/1 129 NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION MODERATE None 0.22784 0.22780 0.41 0.00 None None None None None None CGB1|0.00401329|87.01%

CGB7

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 rs62127883
dbSNP Clinvar
49558211 173.33 T G LowQD 0/1 150 NON_SYNONYMOUS_CODING MODERATE None 0.22324 0.22320 0.67 0.00 None None None None None None CGB7|0.010694201|80.38%
View 15ac02303_s1 genome 19 rs56106646
dbSNP Clinvar
49558210 222.01 A G LowQD 0/1 151 NON_SYNONYMOUS_CODING MODERATE None 0.22324 0.22320 0.39 0.08 None None None None None None CGB7|0.010694201|80.38%
View 15ac02303_s1 genome 19 rs35728583
dbSNP Clinvar
49558216 267.59 C T LowQD 0/1 151 NON_SYNONYMOUS_CODING MODERATE None 0.74 0.01 None None None None None None CGB7|0.010694201|80.38%

CYP2B6

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 rs28399497,rs2279343
dbSNP Clinvar
41515263 33.64 A G LowQD 0/1 23 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.01 None None None None None None CYP2B6|0.387124666|21.59%

CYP4F2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 rs3952537
dbSNP Clinvar
15989696 452.67 G C LowQD 0/1 353 NON_SYNONYMOUS_CODING MODERATE None 0.02 0.25 None None None None None None CYP4F2|0.005649881|85.05%

DDX11

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 12 rs74439745
dbSNP Clinvar
31244703 138.19 C T LowQD 0/1 333 SYNONYMOUS_CODING LOW None None None None None None None DDX11|0.01203892|79.21%

DSPP

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 4 rs111216234
dbSNP Clinvar
88537276 183.2 T C LowQD 0/1 311 SYNONYMOUS_CODING LOW None 0.36801 0.36800 None None None None None None DSPP|0.054175637|61.42%
View 15ac02303_s1 genome 4 rs62651555
dbSNP Clinvar
88537268 364.9 G A LowQD 0/1 305 NON_SYNONYMOUS_CODING MODERATE None 0.14876 0.14880 0.16412 0.00 None None None None None None DSPP|0.054175637|61.42%
View 15ac02303_s1 genome 4 rs150637282
dbSNP Clinvar
88536899 367.24 A G LowQD 0/1 347 NON_SYNONYMOUS_CODING MODERATE None 0.44509 0.44510 0.00 None None None None None None DSPP|0.054175637|61.42%
View 15ac02303_s1 genome 4 rs201295377
dbSNP Clinvar
88537384 438.36 T C LowQD 0/1 335 SYNONYMOUS_CODING LOW None 0.16054 0.16050 0.16270 None None None None None None DSPP|0.054175637|61.42%
View 15ac02303_s1 genome 4 rs111216113
dbSNP Clinvar
88536692 429.29 A G LowQD 0/1 335 NON_SYNONYMOUS_CODING MODERATE None 0.47464 0.47460 0.40178 0.00 None None None None None None DSPP|0.054175637|61.42%
View 15ac02303_s1 genome 4 rs374381786
dbSNP Clinvar
88537306 210.42 T C LowQD 0/1 259 SYNONYMOUS_CODING LOW None None None None None None None DSPP|0.054175637|61.42%
View 15ac02303_s1 genome 4 rs886808443
dbSNP Clinvar
88537303 84.3 C T LowQD 0/1 259 SYNONYMOUS_CODING LOW None None None None None None None DSPP|0.054175637|61.42%
View 15ac02303_s1 genome 4 rs111216224
dbSNP Clinvar
88537279 346.17 C T LowQD 0/1 320 SYNONYMOUS_CODING LOW None 0.36801 0.36800 None None None None None None DSPP|0.054175637|61.42%

DUX4L4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 4 rs782553758
dbSNP Clinvar
191003234 492.98 C T LowQD 0/1 330 NON_SYNONYMOUS_CODING MODERATE None 0.16 0.00 None None None None None None DUX4L4|0.001517207|92.7%
View 15ac02303_s1 genome 4 rs200991186
dbSNP Clinvar
191003238 573.22 G A LowQD 0/1 330 SYNONYMOUS_CODING LOW None None None None None None None DUX4L4|0.001517207|92.7%
View 15ac02303_s1 genome 4 rs534089506
dbSNP Clinvar
191003220 171.64 C G LowQD 0/1 321 SYNONYMOUS_CODING LOW None 0.00419 0.00419 None None None None None None DUX4L4|0.001517207|92.7%

EPPK1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 8 rs6990098
dbSNP Clinvar
144940222 89.33 A C LowQD 0/1 68 SYNONYMOUS_CODING LOW None None None None None None None EPPK1|0.004907463|85.91%

F5

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 1 . 169510637 292.83 T G LowQD 0/1 230 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None F5|0.038758204|66.18%

FAM205A

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 9 rs1697617
dbSNP Clinvar
34724987 192.72 A G LowQD 0/1 411 SYNONYMOUS_CODING LOW None None None None None None None FAM205A|0.002678483|89.31%

FANCD2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 3 rs72492997
dbSNP Clinvar
10088266 157.44 G T LowQD 0/1 91 SPLICE_SITE_REGION+SYNONYMOUS_CODING LOW None None None None None None None FANCD2|0.244996414|32.01%

FRG1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 4 rs868094937
dbSNP Clinvar
190862189 213.41 T A LowQD 0/1 240 NON_SYNONYMOUS_CODING MODERATE None 0.77 0.15 None None None None None None FRG1|0.098149242|51.5%
View 15ac02303_s1 genome 4 . 190862166 79.61 T G LowQD 0/1 135 START_LOST HIGH None 0.00 0.04 None None None None None None FRG1|0.098149242|51.5%
View 15ac02303_s1 genome 4 . 190862167 70.38 G A LowQD 0/1 136 START_LOST HIGH None 0.00 0.02 None None None None None None FRG1|0.098149242|51.5%
View 15ac02303_s1 genome 4 rs78653319
dbSNP Clinvar
190878654 32.09 C G LowQD 0/1 20 NON_SYNONYMOUS_CODING MODERATE None 0.06 0.68 None None None None None None FRG1|0.098149242|51.5%
View 15ac02303_s1 genome 4 rs200620299
dbSNP Clinvar
190874234 322.29 C T LowQD 0/1 170 NON_SYNONYMOUS_CODING MODERATE None 0.01 1.00 None None None None None None FRG1|0.098149242|51.5%

FRG1B

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 20 rs375238322
dbSNP Clinvar
29632635 803.85 C G LowQD 0/1 492 NON_SYNONYMOUS_CODING MODERATE None 0.00 0.26 None None None None None None FRG1B|0.009509512|81.26%
View 15ac02303_s1 genome 20 rs78003242
dbSNP Clinvar
29625873 172.25 A C LowQD 0/1 105 NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION MODERATE None 0.01 0.73 None None None None None None FRG1B|0.009509512|81.26%
View 15ac02303_s1 genome 20 rs371493541
dbSNP Clinvar
29623254 139.65 G A LowQD 0/1 149 SPLICE_SITE_REGION+SYNONYMOUS_CODING LOW None None None None None None None FRG1B|0.009509512|81.26%
View 15ac02303_s1 genome 20 rs747524520
dbSNP Clinvar
29632719 466.29 C T LowQD 0/1 496 SPLICE_SITE_REGION+SYNONYMOUS_CODING LOW None None None None None None None FRG1B|0.009509512|81.26%
View 15ac02303_s1 genome 20 rs73598387
dbSNP Clinvar
29632632 918.74 A G LowQD 0/1 485 SYNONYMOUS_CODING LOW None 0.00020 0.00020 None None None None None None FRG1B|0.009509512|81.26%
View 15ac02303_s1 genome 20 rs73598388
dbSNP Clinvar
29632673 457.82 T C LowQD 0/1 565 NON_SYNONYMOUS_CODING MODERATE None 0.00 0.78 None None None None None None FRG1B|0.009509512|81.26%

HLA-A

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 6 rs45569434
dbSNP Clinvar
29910572 329.18 C T LowQD 0/1 389 NON_SYNONYMOUS_CODING MODERATE None 0.01 0.98 None None None None None None HLA-A|0.043055872|64.8%
View 15ac02303_s1 genome 6 rs2075684
dbSNP Clinvar
29910558 302.09 T C LowQD 0/1 374 NON_SYNONYMOUS_CODING MODERATE None 0.22025 0.22020 0.34926 0.54 0.04 None None None None None None HLA-A|0.043055872|64.8%

HLA-B

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 6 rs17839985,rs281864624
dbSNP Clinvar
31324104 325.23 G A LowQD 0/1 308 SYNONYMOUS_CODING LOW None None None None None None None HLA-B|0.04113834|65.4%

HS6ST1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 2 rs200979099
dbSNP Clinvar
129075877 510.42 G T LowQD 0/1 267 NON_SYNONYMOUS_CODING MODERATE None 0.00 1.00 None None None None None None HS6ST1|0.121406493|47.24%

HYDIN

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 16 rs1774423
dbSNP Clinvar
70926334 33.21 G C LowQD 0/1 28 NON_SYNONYMOUS_CODING MODERATE None 0.93 None None None None None None HYDIN|0.080749251|55.02%

KCNJ12

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 17 rs73313929
dbSNP Clinvar
21319452 52.25 G A LowQD 0/1 60 SYNONYMOUS_CODING LOW None 0.00319 0.00320 None None None None None None KCNJ12|0.437556296|18.82%

KIR2DL3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 rs200164882
dbSNP Clinvar
55250953 222.55 G C LowQD 0/1 158 NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION MODERATE None 0.01 0.02 None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%,KIR2DL3|0.000872917|96.18%

KIR2DL4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 rs200435373
dbSNP Clinvar
55317564 163.63 A G LowQD 0/1 138 NON_SYNONYMOUS_CODING MODERATE None 0.51 0.00 None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%
View 15ac02303_s1 genome 19 rs201419800
dbSNP Clinvar
55317425 76.8 G A LowQD 0/1 141 SYNONYMOUS_CODING LOW None None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%
View 15ac02303_s1 genome 19 rs748394765
dbSNP Clinvar
55317429 88.63 A T LowQD 0/1 141 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%
View 15ac02303_s1 genome 19 rs202246882
dbSNP Clinvar
55317436 272.26 G A LowQD 0/1 152 NON_SYNONYMOUS_CODING MODERATE None 1.00 0.00 None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%
View 15ac02303_s1 genome 19 rs1051454
dbSNP Clinvar
55317456 246.49 G A LowQD 0/1 149 NON_SYNONYMOUS_CODING MODERATE None 0.51597 0.51600 0.14 0.01 None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%
View 15ac02303_s1 genome 19 rs796093143
dbSNP Clinvar
55317529 224.79 A G LowQD 0/1 133 NON_SYNONYMOUS_CODING MODERATE None 0.22 0.03 None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%
View 15ac02303_s1 genome 19 rs796666015
dbSNP Clinvar
55317530 257.8 A G LowQD 0/1 132 SYNONYMOUS_CODING LOW None None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%
View 15ac02303_s1 genome 19 rs112694450
dbSNP Clinvar
55317541 257.72 T C LowQD 0/1 142 NON_SYNONYMOUS_CODING MODERATE None 0.22 0.01 None None None None None None KIR3DL1|0.000640018|97.61%,KIR2DL4|0.000718329|97.16%

KIR3DL2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 19 rs985925024
dbSNP Clinvar
55367083 47.86 A G LowQD 0/1 131 NON_SYNONYMOUS_CODING MODERATE None 0.21 0.00 None None None None None None KIR3DL1|0.000640018|97.61%,KIR3DL2|0.000627152|97.71%
View 15ac02303_s1 genome 19 rs953284565
dbSNP Clinvar
55367080 123.45 A T LowQD 0/1 132 NON_SYNONYMOUS_CODING MODERATE None 0.08 0.02 None None None None None None KIR3DL1|0.000640018|97.61%,KIR3DL2|0.000627152|97.71%
View 15ac02303_s1 genome 19 rs973541788
dbSNP Clinvar
55377875 127.91 C G LowQD 0/1 78 NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION MODERATE None 1.00 0.00 4.80 0.16 0.84428 D None None None None KIR3DL1|0.000640018|97.61%,KIR3DL2|0.000627152|97.71%
View 15ac02303_s1 genome 19 . 55367093 58.61 T A LowQD 0/1 134 SYNONYMOUS_CODING LOW None None None None None None None KIR3DL1|0.000640018|97.61%,KIR3DL2|0.000627152|97.71%

KMT2C

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 7 rs28439884
dbSNP Clinvar
151927026 43.62 T C LowQD 0/1 43 SYNONYMOUS_CODING LOW None None None None None None None KMT2C|0.088346598|53.58%

KRT32

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 17 rs2071561
dbSNP Clinvar
39622068 44.67 G T LowQD 0/1 29 NON_SYNONYMOUS_CODING MODERATE None 0.49960 0.49960 0.42719 0.00 0.77 None None None None None None KRT32|0.027899063|70.47%

MAML3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 4 rs758088052
dbSNP Clinvar
140811099 32.86 C T LowQD 0/1 52 SYNONYMOUS_CODING LOW None None None None None None None MAML3|0.444017284|18.48%

MAP2K3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 17 rs74575904
dbSNP Clinvar
21207813 585.6 T G LowQD 0/1 344 NON_SYNONYMOUS_CODING MODERATE None 0.00 1.00 None None None None None None MAP2K3|0.4379498|18.79%

MTCH2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 11 rs78071782
dbSNP Clinvar
47647238 59.94 A G LowQD 0/1 132 NON_SYNONYMOUS_CODING MODERATE None 0.10 0.05 None None None None None None MTCH2|0.544905089|13.99%

MUC2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 11 rs111163720
dbSNP Clinvar
1092684 773.99 C T LowQD 0/1 586 SYNONYMOUS_CODING LOW None None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs200369243
dbSNP Clinvar
1093622 251.42 T C LowQD 0/1 327 NON_SYNONYMOUS_CODING MODERATE None 0.00499 0.00 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs149562922
dbSNP Clinvar
1092643 328.64 A C LowQD 0/1 503 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs200605255
dbSNP Clinvar
1092557 109.73 G C LowQD 0/1 108 NON_SYNONYMOUS_CODING MODERATE None 0.34565 0.34560 0.00 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 . 1092390 136.77 T A LowQD 0/1 165 SYNONYMOUS_CODING LOW None None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs79238439
dbSNP Clinvar
1093549 322.85 G C LowQD 0/1 449 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs34493663
dbSNP Clinvar
1093512 841.49 C A LowQD 0/1 467 SYNONYMOUS_CODING LOW None None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs112894065
dbSNP Clinvar
1092516 139.6 G A LowQD 0/1 117 SYNONYMOUS_CODING LOW None 0.00140 0.02676 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs34136803
dbSNP Clinvar
1093452 428.93 G A LowQD 0/1 528 SYNONYMOUS_CODING LOW None None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs796079448
dbSNP Clinvar
1092428 112.39 T C LowQD 0/1 126 NON_SYNONYMOUS_CODING MODERATE None 0.31 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs12574966
dbSNP Clinvar
1093167 78.48 A C LowQD 0/1 776 SYNONYMOUS_CODING LOW None None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs12575990
dbSNP Clinvar
1093072 851.64 G C LowQD 0/1 572 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs11245947
dbSNP Clinvar
1093057 1286.51 A G LowQD 0/1 756 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs56219745
dbSNP Clinvar
1092872 2613.96 C G LowQD 0/1 1665 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC2|0.013216618|78.34%
View 15ac02303_s1 genome 11 rs77094665
dbSNP Clinvar
1092760 531.95 A C LowQD 0/1 616 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC2|0.013216618|78.34%

MUC4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 15ac02303_s1 genome 3 rs3107750
dbSNP Clinvar
195512646 53.63 C G LowQD 0/1 109 SYNONYMOUS_CODING LOW None None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs756683164
dbSNP Clinvar
195507906 182.16 G T LowQD 0/1 111 SYNONYMOUS_CODING LOW None None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs201559646
dbSNP Clinvar
195508174 38.75 G T LowQD 0/1 144 NON_SYNONYMOUS_CODING MODERATE None 0.00260 0.00260 0.90 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs199854975
dbSNP Clinvar
195509676 194.29 C G LowQD 0/1 165 NON_SYNONYMOUS_CODING MODERATE None 0.01 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs74867514
dbSNP Clinvar
195511051 102.93 C A LowQD 0/1 85 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs778868605
dbSNP Clinvar
195511093 99.97 C T LowQD 0/1 112 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs71617307
dbSNP Clinvar
195512030 76.81 C G LowQD 0/1 176 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs62282487
dbSNP Clinvar
195512247 144.14 A G LowQD 0/1 84 SYNONYMOUS_CODING LOW None None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs2688553
dbSNP Clinvar
195512768 48.56 T A LowQD 0/1 87 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs77724343
dbSNP Clinvar
195513180 75.0 C G LowQD 0/1 118 NON_SYNONYMOUS_CODING MODERATE None 0.01 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs78921372
dbSNP Clinvar
195513324 84.13 C G LowQD 0/1 94 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs756935454
dbSNP Clinvar
195515460 107.89 A G LowQD 0/1 73 SYNONYMOUS_CODING LOW None None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 . 195506071 120.22 G C LowQD 0/1 88 NON_SYNONYMOUS_CODING MODERATE None 0.00 None None None None None None MUC4|0.005441696|85.29%
View 15ac02303_s1 genome 3 rs182908415
dbSNP Clinvar
195506178 45.61 G T LowQD 0/1 71 SYNONYMOUS_CODING LOW None 0.00579 0.00579 None None None None None None MUC4|0.005441696|85.29%