+ Filter Options

SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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+ Genes 1

Genes:
NLGN4Y,

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 10
Number of Genes: 1

Export to: CSV
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NLGN4Y
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View ex_013_mod Y rs764411802
dbSNP Clinvar 		16952347 2272.81 T C PASS 1/1 3 SYNONYMOUS_CODING LOW None None None None None None None NLGN4Y|0.004668477|86.25%
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View ex_013_mod Y rs73620059
dbSNP Clinvar 		13573033 228101.79 A C PASS 1/1 14 None None None None None None None None None None
View ex_013_mod Y rs78037666
dbSNP Clinvar 		13573108 157064.41 G C PASS 1/1 9 None None None None None None None None None None
View ex_013_mod Y rs78646699
dbSNP Clinvar 		13573152 95516.0 C A PASS 1/1 6 None None None None None None None None None None
View ex_013_mod Y rs78060392
dbSNP Clinvar 		13573216 25309.76 G A PASS 1/1 2 None None None None None None None None None None
View ex_013_mod Y rs77866025
dbSNP Clinvar 		13572999 218477.0 A G PASS 1/1 15 None None None None None None None None None None
View ex_013_mod Y rs62603878
dbSNP Clinvar 		13573271 36705.65 G T PASS 1/1 3 None None None None None None None None None None
View ex_013_mod Y rs762604315
dbSNP Clinvar 		14107467 5219.22 C T PASS 0/1 17 None None None None None None None None None None
View ex_013_mod Y rs761334775
dbSNP Clinvar 		14532067 1727.37 T A PASS 1/1 2 None None None None None None None None None None
View ex_013_mod Y rs77013519
dbSNP Clinvar 		13573240 18022.33 C T PASS 1/1 2 None None None None None None None None None None
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