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SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

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SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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+ Genes

Genes:

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 12
Number of Genes: 0

Export to: CSV
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Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View final-ma145 1 rs77818645
dbSNP Clinvar 		202046196 45.77 G C PASS 0/1 5 MOTIF[MA0099.1:Cfos] MODIFIER None 0.13878 0.13880 None None None None None None None
View final-ma145 3 rs9878617
dbSNP Clinvar 		36404564 48.74 A G PASS 1/1 2 MOTIF[MA0099.1:Cfos] LOW None 0.06649 0.06649 None None None None None None None
View final-ma145 4 rs542397193
dbSNP Clinvar 		25938549 62.74 G T PASS 1/1 2 MOTIF[MA0099.1:Cfos] LOW None 0.00020 0.00020 None None None None None None None
View final-ma145 17 rs1263970
dbSNP Clinvar 		49784791 46.74 T C PASS 1/1 2 MOTIF[MA0099.1:Cfos] LOW None 0.77536 0.77540 None None None None None None CA10|0.86384685|4.4%
View final-ma145 21 rs2835121
dbSNP Clinvar 		37118215 52.74 C T PASS 1/1 2 MOTIF[MA0099.1:Cfos] MODIFIER None 0.61022 0.61020 None None None None None None RUNX1|0.998765461|0.45%
View final-ma145 4 rs562317025
dbSNP Clinvar 		25938550 62.74 T G PASS 1/1 2 MOTIF[MA0099.1:Cfos] LOW None 0.00020 0.00020 None None None None None None None
View final-ma145 18 rs73409587
dbSNP Clinvar 		11857634 55.78 A G PASS 0/1 5 MOTIF[MA0099.1:Cfos] LOW None 0.12939 0.12940 None None None None None None GNAL|0.553411406|13.57%
View final-ma145 19 rs2602708
dbSNP Clinvar 		4915341 88.77 G A PASS 0/1 7 MOTIF[MA0099.1:Cfos] MODIFIER None 0.68790 0.68790 None None None None None None None
View final-ma145 19 rs3855675
dbSNP Clinvar 		33488085 110.9 G A PASS 1/1 5 MOTIF[MA0099.1:Cfos] MODIFIER None 0.81390 0.81390 None None None None None None RHPN2|0.04493503|64.24%
View final-ma145 2 rs12990594
dbSNP Clinvar 		178192926 48.74 C T PASS 1/1 2 MOTIF[MA0099.1:Cfos] MODIFIER None 0.49381 0.49380 None None None None None None NFE2L2|0.563249896|13.23%
View final-ma145 3 rs9873833
dbSNP Clinvar 		15352476 62.74 A C PASS 1/1 2 MOTIF[MA0099.1:Cfos] LOW None 0.49341 0.49340 None None None None None None SH3BP5|0.180171938|39.03%
View final-ma145 15 rs7183977
dbSNP Clinvar 		40377092 36.77 T C PASS 0/1 8 MOTIF[MA0099.1:Cfos] MODIFIER None 0.16554 0.16550 None None None None None None None
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