SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

CDKN1C, NBN, PHOX2B, RB1, RECQL4,
CDKN1C Beckwith-Wiedemann syndrome, 130650 (3)
IMAGE syndrome, 614732 (3)
NBN Aplastic anemia, 609135 (3)
Leukemia, acute lymphoblastic, 613065 (3)
Nijmegen breakage syndrome, 251260 (3)
PHOX2B Central hypoventilation syndrome, congenital, with or without Hirschsprung disease, 209880 (3)
{Neuroblastoma, susceptibility to, 2}, 613013 (3)
Neuroblastoma with Hirschsprung disease, 613013 (3)
RB1 Bladder cancer, somatic, 109800 (3)
Osteosarcoma, somatic, 259500 (3)
Retinoblastoma, 180200 (3)
Retinoblastoma, trilateral, 180200 (3)
Small cell cancer of the lung, somatic, 182280 (3)
RECQL4 Baller-Gerold syndrome, 218600 (3)
RAPADILINO syndrome, 266280 (3)
Rothmund-Thomson syndrome, 268400 (3)

Genes at Clinical Genomics Database

CDKN1C, NBN, PHOX2B, RB1, RECQL4,
CDKN1C IMAGE syndrome
Beckwith-Wiedemann syndrome
NBN Breast cancer, susceptibility to
Nijmegen breakage syndrome
PHOX2B Central hypoventilation syndrome, congenital
Neuroblastoma with Hirschsprung disease
Neuroblastoma, susceptiblity to, 2
RB1 Retinoblastoma
RECQL4 Baller-Gerold syndrome
RAPADILINO syndrome
Rothmund-Thomson syndrome

Genes at HGMD

Summary

Number of Variants: 19
Number of Genes: 5

Export to: CSV
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CDKN1C

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View larissa_s11 11 . 2906416 100.0 G C SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.11 0.64 None None None None None None CDKN1C|0.344780889|24.52%
View larissa_s11 11 rs774805080
dbSNP Clinvar
2906415 69.0 A T SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.00 0.90 None None None None None None CDKN1C|0.344780889|24.52%
View larissa_s11 11 . 2906404 46.0 GC G SB 0/1 0 FRAME_SHIFT HIGH None None None None None None None CDKN1C|0.344780889|24.52%
View larissa_s11 11 . 2906409 81.0 A T SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.00 0.49 None None None None None None CDKN1C|0.344780889|24.52%
View larissa_s11 11 . 2906207 39.0 A G SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None CDKN1C|0.344780889|24.52%

NBN

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View larissa_s11 8 . 90976684 100.0 G A SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None NBN|0.433060118|19.03%

PHOX2B

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View larissa_s11 4 . 41748034 100.0 C T SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None PHOX2B|0.180277382|39.01%
View larissa_s11 4 . 41748037 100.0 C G SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None PHOX2B|0.180277382|39.01%
View larissa_s11 4 rs757355779
dbSNP Clinvar
41748043 100.0 T C SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None PHOX2B|0.180277382|39.01%
View larissa_s11 4 . 41748043 65.0 T G SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None PHOX2B|0.180277382|39.01%
View larissa_s11 4 . 41748034 68.0 C G SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None PHOX2B|0.180277382|39.01%

RB1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View larissa_s11 13 rs770488256
dbSNP Clinvar
48878125 60.0 C T SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.51 0.00 None None None None None None RB1|0.998226541|0.53%
View larissa_s11 13 . 48878129 74.0 C G SB 0/1 0 SYNONYMOUS_CODING LOW None None None None None None None RB1|0.998226541|0.53%
View larissa_s11 13 . 48878112 41.0 G C SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.21 0.00 None None None None None None RB1|0.998226541|0.53%

RECQL4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View larissa_s11 8 . 145743143 53.0 T C SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.01 0.01 None None None None None None RECQL4|0.005456729|85.27%
View larissa_s11 8 . 145738764 56.0 A C SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.00 0.94 None None None None None None RECQL4|0.005456729|85.27%
View larissa_s11 8 . 145743152 66.0 T C SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.08 0.23 None None None None None None RECQL4|0.005456729|85.27%
View larissa_s11 8 . 145743160 41.0 C CG SB 0/1 0 FRAME_SHIFT HIGH None None None None None None None RECQL4|0.005456729|85.27%
View larissa_s11 8 . 145743158 49.0 A C SB 0/1 0 NON_SYNONYMOUS_CODING MODERATE None 0.02 0.99 None None None None None None RECQL4|0.005456729|85.27%
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