SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 13
Number of Genes: 1

Export to: CSV
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TMX4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mm170835gc 20 rs2294248
dbSNP Clinvar
7999642 613.77 G A . 0/1 65 MOTIF[MA0147.1:Cmyc] LOW None 0.51058 0.51060 0.00 None None None None None None TMX4|0.096483317|51.84%
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mm170835gc 4 rs2286773
dbSNP Clinvar
17616214 281.77 C A . 0/1 20 MOTIF[MA0147.1:Cmyc] LOW None 0.00240 0.63500 None None None None None None None
View mm170835gc 7 rs4727266
dbSNP Clinvar
91570129 151.9 C T . 1/1 5 MOTIF[MA0147.1:Cmyc] LOW None 0.62859 0.62860 None None None None None None None
View mm170835gc 10 rs2251039
dbSNP Clinvar
60028894 159.77 C T . 0/1 10 MOTIF[MA0147.1:Cmyc] MODIFIER None 0.39677 0.39680 None None None None None None CISD1|0.294546332|28.08%
View mm170835gc 3 rs116015045
dbSNP Clinvar
31574829 226.77 C T . 0/1 30 MOTIF[MA0147.1:Cmyc] MODIFIER None 0.00300 0.00300 0.00297 None None None None None None STT3B|0.425372304|19.32%
View mm170835gc 17 rs3813911
dbSNP Clinvar
36003275 796.77 T A . 1/1 24 MOTIF[MA0147.1:Cmyc] LOW None 0.75120 0.75120 None None None None None None DDX52|0.446354586|18.34%
View mm170835gc 19 rs8103849
dbSNP Clinvar
4909629 2603.77 C G . 1/1 83 MOTIF[MA0147.1:Cmyc] LOW None 0.35064 0.35060 None None None None None None None
View mm170835gc 16 rs1563072
dbSNP Clinvar
81129416 69.79 G A . 0/1 4 MOTIF[MA0147.1:Cmyc] LOW None 0.91414 0.91410 None None None None None None GCSH|0.200287354|36.73%
View mm170835gc 5 rs897672
dbSNP Clinvar
59996101 38.74 C G . 1/1 2 MOTIF[MA0147.1:Cmyc] LOW None 0.58087 0.58090 None None None None None None None
View mm170835gc 12 rs7310175
dbSNP Clinvar
120632729 44.74 C T . 1/1 2 MOTIF[MA0147.1:Cmyc] LOW None 0.40535 0.40540 None None None None None None None
View mm170835gc 2 rs2305132
dbSNP Clinvar
113956941 122.77 T A . 0/1 11 MOTIF[MA0147.1:Cmyc] MODIFIER None 0.26398 0.26400 None None None None None None PSD4|0.014238513|77.7%
View mm170835gc 3 rs11717719
dbSNP Clinvar
126247795 570.77 C T . 1/1 16 MOTIF[MA0147.1:Cmyc] LOW None 0.45068 0.45070 None None None None None None CHST13|0.027597209|70.61%,C3orf22|0.001090009|94.98%
View mm170835gc 9 rs28705707
dbSNP Clinvar
139940653 363.77 C A . 1/1 12 MOTIF[MA0147.1:Cmyc] MODIFIER None 0.21805 0.21810 None None None None None None NPDC1|0.003521242|87.74%
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