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SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
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EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

CACNA1B, CC2D2A, CHRNA3, MAP3K1, TMIE, WDR81,
CACNA1B ?Dystonia 23, 614860 (3)
CC2D2A COACH syndrome, 216360 (3)
Joubert syndrome 9, 612285 (3)
Meckel syndrome 6, 612284 (3)
CHRNA3 {Lung cancer susceptibility 2}, 612052 (3)
MAP3K1 46XY sex reversal 6, 613762 (3)
TMIE Deafness, autosomal recessive 6, 600971 (3)
WDR81 Cerebellar ataxia, mental retardation, and dysequilibrium syndrome 2, 610185 (3)
Hydrocephalus, congenital, 3, with brain anomalies, 617967 (3)

Genes at Clinical Genomics Database

CACNA1B, CC2D2A, MAP3K1, TMIE, WDR81,
CACNA1B Dystonia 23
CC2D2A Joubert syndrome 9
Meckel syndrome 6
COACH syndrome
MAP3K1 46,XY sex reversal 6
TMIE Deafness, autosomal recessive 6
WDR81 Cerebellar ataxia, mental retardation, and dysequilibrium syndrome 2

Genes at HGMD

Summary

Number of Variants: 41
Number of Genes: 38

Export to: CSV
  • Page 1 of 1

ACIN1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 14 rs781019754
dbSNP Clinvar
23549352 1219.73 TAGG T . 0/1 54 CODON_DELETION MODERATE None None None None None None None ACIN1|0.717450786|8.04%

ACTRT2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 1 rs4013154
dbSNP Clinvar
2938407 2139.73 CAGA C . 1/1 50 CODON_DELETION MODERATE None 0.11242 0.11240 0.12492 None None None None None None ACTRT2|0.018444598|74.99%

ARG2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 14 rs35418251
dbSNP Clinvar
68108962 833.73 TACA T . 0/1 46 CODON_DELETION MODERATE None 0.00240 0.00240 0.00807 None None None None None None ARG2|0.25607702|31.03%

C14orf180

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 14 rs111285011,rs750841137,rs11278058,rs569942489
dbSNP Clinvar
105055118 236.73 TG... T . 0/1 14 CODON_DELETION MODERATE None 0.60144 0.60140 0.37790 None None None None None None TMEM179|0.016981919|75.87%,C14orf180|0.001311006|93.82%

CABLES1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 18 rs139352344
dbSNP Clinvar
20716014 367.73 GG... G . 0/1 15 CODON_DELETION MODERATE None 0.22424 0.22420 None None None None None None CABLES1|0.229324595|33.42%

CACNA1B

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 9 rs145816559,rs370787788
dbSNP Clinvar
140918170 429.73 TG... T . 0/1 38 CODON_DELETION MODERATE None 0.39736 0.39740 0.24153 None None None None None None CACNA1B|0.168604934|40.5%

CC2D2A

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 4 rs386833764
dbSNP Clinvar
15513004 455.73 GGAA G . 0/1 41 CODON_DELETION MODERATE None 0.04333 0.04333 0.05495 None None None None None None CC2D2A|0.011782601|79.39%

CCDC33

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 15 rs10552820,rs35899977,rs397774110
dbSNP Clinvar
74536400 663.73 TAAG T . 0/1 47 CODON_DELETION MODERATE None 0.37700 0.37700 0.46150 None None None None None None CCDC33|0.011870787|79.31%

CHRNA3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 15 rs66793222,rs143833222,rs60706203
dbSNP Clinvar
78913067 185.73 ACAG A . 0/1 9 CODON_DELETION MODERATE None None None None None None None CHRNA3|0.230381335|33.33%

DLEC1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 3 rs144512522,rs61108705
dbSNP Clinvar
38164070 616.73 CATG C . 0/1 33 CODON_DELETION MODERATE None 0.12081 0.12080 0.14367 None None None None None None DLEC1|0.00947585|81.3%,ACAA1|0.152807913|42.57%

DMTF1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 7 rs148453627
dbSNP Clinvar
86795880 1581.73 TTGA T . 0/1 72 CODON_DELETION MODERATE None 0.00859 0.00859 None None None None None None DMTF1|0.708314875|8.26%

FAM230A

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 22 rs761653586
dbSNP Clinvar
20710186 136.73 TC... T . 0/1 33 CODON_DELETION MODERATE None None None None None None None FAM230A|0.000608157|97.89%,USP41|0.001419633|93.25%

FBXL21

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 5 rs1160982,rs568134250
dbSNP Clinvar
135276201 1427.73 AGTT A . 1/1 33 CODON_DELETION MODERATE None 0.73423 0.73420 0.30509 None None None None None None LECT2|0.064888014|58.67%

GOLGA6L2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 15 rs779250776
dbSNP Clinvar
23686088 70.73 TCTC T . 0/1 55 CODON_DELETION MODERATE None None None None None None None GOLGA6L2|0.000844228|96.42%

GPR112

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep X rs34255702,rs563570937
dbSNP Clinvar
135474444 3245.73 AGAT A . 1/1 74 CODON_DELETION MODERATE None 0.73722 0.73720 0.36492 None None None None None None ADGRG4|0.00835627|82.29%

KCNJ12

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 17 rs112163749
dbSNP Clinvar
21319650 856.73 CGAG C . 0/1 98 CODON_DELETION MODERATE None None None None None None None KCNJ12|0.437556296|18.82%

KRTAP17-1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 17 rs796334391,rs796251471
dbSNP Clinvar
39471752 288.73 TG... T . 0/1 18 CODON_DELETION MODERATE None 0.23243 0.23240 0.21027 None None None None None None KRTAP17-1|0.012669369|78.77%

LRRC17

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 7 rs3832497,rs531650613
dbSNP Clinvar
102574999 2747.73 TGAA T . 1/1 63 CODON_DELETION MODERATE None 0.63179 0.63180 0.25633 None None None None None None FBXL13|0.013552601|78.17%,LRRC17|0.102449665|50.7%

MAML3

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 4 rs5862430,rs758674725,rs397881377,rs3051167
dbSNP Clinvar
140651584 1357.73 TCTG T . 1/1 33 CODON_DELETION MODERATE None 0.99101 0.99100 None None None None None None MGST2|0.034049931|67.77%,MAML3|0.444017284|18.48%

MAP3K1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 5 rs5868032,rs869174877,rs869264361,rs10552703,rs398064829
dbSNP Clinvar
56177848 1000.73 TCAA T . 0/1 54 CODON_DELETION MODERATE None None None None None None None MAP3K1|0.554683454|13.53%

MST1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 3 rs754122895
dbSNP Clinvar
49723321 338.73 AG... A . 0/1 167 CODON_DELETION MODERATE None None None None None None None MST1|0.051015484|62.36%

MUC4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 3 rs779342680
dbSNP Clinvar
195509579 2773.73 CG... C . 0/1 145 CODON_DELETION MODERATE None None None None None None None MUC4|0.005441696|85.29%
View pdb346 vep 3 . 195511238 1529.73 CG... C . 0/1 752 CODON_DELETION MODERATE None None None None None None None MUC4|0.005441696|85.29%
View pdb346 vep 3 rs762245803
dbSNP Clinvar
195511031 69.73 AT... A . 0/1 304 CODON_DELETION MODERATE None None None None None None None MUC4|0.005441696|85.29%
View pdb346 vep 3 rs779080648
dbSNP Clinvar
195506270 4741.73 GA... G . 1/1 108 CODON_DELETION MODERATE None 0.14819 None None None None None None MUC4|0.005441696|85.29%

NUCB2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 11 rs3842269,rs535406012
dbSNP Clinvar
17352477 2556.73 TACA T . 1/1 58 CODON_DELETION MODERATE None 0.25359 0.25360 0.22995 None None None None None None NUCB2|0.293597468|28.15%

NUTM2F

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 9 rs150455117
dbSNP Clinvar
97080944 1086.73 GAGA G . 0/1 67 CODON_DELETION MODERATE None 0.75419 0.75420 0.29501 None None None None None None NUTM2F|0.000786519|96.75%

OR4X1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 11 rs76884411,rs57294041
dbSNP Clinvar
48285981 3734.73 CCTT C . 1/1 86 CODON_DELETION MODERATE None 0.60403 0.60400 0.30860 None None None None None None OR4X1|0.01331956|78.29%

PIK3C2G

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 12 rs35277916,rs796435817
dbSNP Clinvar
18435398 487.73 GCCC G . 0/1 31 CODON_DELETION MODERATE None 0.30831 0.30830 0.34238 None None None None None None RERGL|0.064599802|58.71%,PIK3C2G|0.036855769|66.84%

PLK5

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 19 rs58035688,rs796379895
dbSNP Clinvar
1535193 694.73 GCCC G . 0/1 49 CODON_DELETION MODERATE None 0.45867 0.45870 None None None None None None PLK5|0.003429971|87.9%

PPIL4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 6 rs535267469
dbSNP Clinvar
149833416 672.73 CT... C . 0/1 51 CODON_DELETION MODERATE None 0.00064 None None None None None None PPIL4|0.371048194|22.65%

PTPN18

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 2 rs112040677
dbSNP Clinvar
131129928 289.73 AG... A . 0/1 18 CODON_DELETION MODERATE None 0.34425 0.34420 0.28081 None None None None None None PTPN18|0.008124446|82.52%

RP11-166B2.1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 16 rs765933829
dbSNP Clinvar
12021298 1379.73 GT... G . 0/1 121 CODON_DELETION MODERATE None None None None None None None None

RRP36

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 6 rs200886831,rs753769770,rs551189349
dbSNP Clinvar
42989413 202.73 CG... C . 0/1 10 CODON_DELETION MODERATE None None None None None None None RRP36|0.058705123|60.22%

TMIE

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 3 rs10578999,rs397817178
dbSNP Clinvar
46751073 1198.73 TAAG T . 1/1 28 CODON_DELETION MODERATE None 0.75320 None None None None None None TMIE|0.142194222|44.12%

TP53TG5

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 20 rs10546815,rs562359566
dbSNP Clinvar
44004155 439.73 CATT C . 0/1 36 CODON_DELETION MODERATE None 0.38658 0.38660 0.48961 None None None None None None SYS1|0.552810093|13.61%,TP53TG5|0.004045663|86.94%

UGGT1

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 2 . 128910410 632.73 ATGT A . 0/1 49 CODON_DELETION MODERATE None None None None None None None UGGT1|0.159062304|41.71%

USP20

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 9 rs10602985,rs760862530,rs398096692
dbSNP Clinvar
132630664 1368.73 TGAC T . 1/1 32 CODON_DELETION MODERATE None 0.84864 0.84860 0.19048 None None None None None None USP20|0.195223584|37.23%

WDR81

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 17 rs35048651,rs577690948
dbSNP Clinvar
1631340 848.73 TGAG T . 0/1 42 CODON_DELETION MODERATE None 0.21186 0.21190 0.18584 None None None None None None WDR81|0.133896381|45.31%

ZNF283

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 19 rs79626467,rs71907168
dbSNP Clinvar
44351166 2179.73 GG... G . 1/1 50 CODON_DELETION MODERATE None 0.38778 0.38780 0.38758 None None None None None None ZNF283|0.014136174|77.77%

ZNF284

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View pdb346 vep 19 rs139900131,rs369411341
dbSNP Clinvar
44589999 1364.73 TCTC T . 0/1 61 CODON_DELETION MODERATE None 0.45088 0.45090 0.44731 None None None None None None ZNF284|0.000961429|95.72%
  • Page 1 of 1