SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes:

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 35
Number of Genes: 0

Export to: CSV
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Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View snps raw 1 rs2887285
dbSNP Clinvar
1242983 248.77 G A . 0/1 22 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.49381 0.49380 None None None None None None ACAP3|0.021694685|73.34%
View snps raw 1 rs11264331
dbSNP Clinvar
155100265 158.77 A G . 0/1 17 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.66673 0.66670 None None None None None None EFNA1|0.216641674|34.78%
View snps raw 1 rs11585456
dbSNP Clinvar
201458522 130.03 C G . 1/1 5 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.29872 0.29870 None None None None None None CSRP1|0.232838964|33.11%
View snps raw 1 rs73105692
dbSNP Clinvar
217804208 1209.77 G T . 0/1 131 MOTIF[MA0003.1:Ap2alpha] LOW None 0.06949 0.06949 0.06179 None None None None None None GPATCH2|0.28849799|28.48%
View snps raw 1 rs3841811,rs10672134,rs58962570
dbSNP Clinvar
246670626 458.73 A AG... . 0/1 21 MOTIF[MA0003.1:Ap2alpha] LOW None None None None None None None None
View snps raw 2 rs62181670
dbSNP Clinvar
172380146 365.77 C T . 0/1 24 MOTIF[MA0003.1:Ap2alpha] LOW None 0.18490 0.18490 None None None None None None CYBRD1|0.074895828|56.32%
View snps raw 5 rs34372448
dbSNP Clinvar
1801427 2043.73 C CG . 1/1 49 MOTIF[MA0003.1:Ap2alpha] LOW None 0.61542 0.61540 None None None None None None MRPL36|0.002012562|90.97%
View snps raw 5 rs11745573
dbSNP Clinvar
1801432 1610.77 A G . 1/1 52 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.61542 0.61540 None None None None None None MRPL36|0.002012562|90.97%
View snps raw 5 rs62356073
dbSNP Clinvar
36241922 99.77 G A . 0/1 8 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.25839 0.25840 None None None None None None NADK2|0.558013874|13.42%
View snps raw 5 rs151202
dbSNP Clinvar
54529604 128.03 G A . 1/1 4 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.64557 0.64560 None None None None None None None
View snps raw 5 rs34647
dbSNP Clinvar
72112430 633.77 C G . 1/1 19 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.84325 0.84330 None None None None None None TNPO1|0.577927625|12.67%
View snps raw 9 rs797041879
dbSNP Clinvar
68726323 156.77 C A . 0/1 33 MOTIF[MA0003.1:Ap2alpha] LOW None None None None None None None None
View snps raw 9 rs3013306
dbSNP Clinvar
139440845 1204.77 G A . 1/1 40 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.35423 0.35420 None None None None None None None
View snps raw 10 rs117733067
dbSNP Clinvar
3214691 499.77 G A . 0/1 34 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.05192 0.05192 None None None None None None PITRM1|0.017462354|75.61%
View snps raw 10 rs55634178
dbSNP Clinvar
3214693 430.77 G A . 0/1 33 MOTIF[MA0003.1:Ap2alpha] LOW None 0.10843 0.10840 None None None None None None PITRM1|0.017462354|75.61%
View snps raw 15 rs3803354
dbSNP Clinvar
40856989 5358.77 C T . 1/1 158 MOTIF[MA0003.1:Ap2alpha] LOW None 0.85603 0.85600 0.11712 None None None None None None C15orf57|0.10303008|50.61%
View snps raw 15 rs66822811,rs3834548
dbSNP Clinvar
48623248 5248.73 TC... T . 1/1 30 MOTIF[MA0003.1:Ap2alpha] LOW None 0.53954 0.53950 None None None None None None DUT|0.607180992|11.55%
View snps raw 17 rs57311484,rs754079160,rs796727796
dbSNP Clinvar
33307700 1938.73 GC G . 1/1 49 MOTIF[MA0003.1:Ap2alpha] LOW None 1.00000 1.00000 None None None None None None CCT6B|0.170692374|40.2%,LIG3|0.912616535|3.17%
View snps raw 20 rs6122141
dbSNP Clinvar
61273717 773.77 G C . 0/1 47 MOTIF[MA0003.1:Ap2alpha] LOW None 0.51558 0.51560 None None None None None None None
View snps raw 22 rs71845980
dbSNP Clinvar
32340837 185.0 CG C . 0/1 8 MOTIF[MA0003.1:Ap2alpha] LOW None 0.47584 0.47580 0.40809 None None None None None None C22orf24|0.001025322|95.27%,YWHAH|0.465802488|17.36%
View snps raw 8 rs379266
dbSNP Clinvar
26436109 399.77 C T . 0/1 25 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.76957 0.76960 None None None None None None DPYSL2|0.481859756|16.66%
View snps raw 10 rs7100870
dbSNP Clinvar
96122826 269.77 C T . 0/1 25 MOTIF[MA0003.1:Ap2alpha] LOW None 0.08247 0.08247 None None None None None None None
View snps raw 17 rs150854949,rs531119562
dbSNP Clinvar
48277059 12084.73 AG... A . 1/1 84 MOTIF[MA0003.1:Ap2alpha] LOW None 0.51438 0.51440 None None None None None None COL1A1|0.749779298|7.09%
View snps raw 17 rs28365944
dbSNP Clinvar
80416377 377.77 C G . 1/1 12 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.58826 0.58830 None None None None None None NARF|0.028729266|70.07%
View snps raw 18 rs8087496
dbSNP Clinvar
12308504 1476.77 G A . 1/1 40 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.97484 0.97480 None None None None None None TUBB6|0.061114418|59.56%
View snps raw 6 rs11461877,rs869143962,rs397715970
dbSNP Clinvar
36853786 1914.73 A AG . 1/1 56 MOTIF[MA0003.1:Ap2alpha] LOW None 1.00000 1.00000 0.00494 None None None None None None C6orf89|0.124247885|46.78%
View snps raw 8 rs8192339
dbSNP Clinvar
22019071 1091.77 G A . 1/1 31 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.02596 0.02596 None None None None None None SFTPC|0.239824036|32.46%
View snps raw 9 rs882812
dbSNP Clinvar
32384825 519.77 G A . 0/1 48 MOTIF[MA0003.1:Ap2alpha] LOW None 0.14117 0.14120 None None None None None None ACO1|0.412115925|20.03%
View snps raw 10 rs2274246
dbSNP Clinvar
100175060 626.77 C T . 0/1 40 MOTIF[MA0003.1:Ap2alpha] LOW None 0.43830 0.43830 None None None None None None None
View snps raw 13 rs6650325
dbSNP Clinvar
95953289 365.77 C A . 0/1 23 MOTIF[MA0003.1:Ap2alpha] LOW None 0.50419 0.50420 None None None None None None ABCC4|0.142494523|44.07%
View snps raw 13 rs9524896
dbSNP Clinvar
95953292 359.77 G A . 0/1 23 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.50020 0.50020 None None None None None None ABCC4|0.142494523|44.07%
View snps raw 13 rs9517155
dbSNP Clinvar
98629334 873.77 G C . 1/1 28 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.63858 0.63860 None None None None None None IPO5|0.498949955|15.88%
View snps raw 16 rs3743609
dbSNP Clinvar
75467021 247.78 G C . 1/1 8 MOTIF[MA0003.1:Ap2alpha] MODIFIER None 0.45927 0.45930 None None None None None None CFDP1|0.522465151|14.87%
View snps raw 17 rs8076153
dbSNP Clinvar
37026236 227.77 C T . 0/1 17 MOTIF[MA0003.1:Ap2alpha] LOW None 0.17552 0.17550 None None None None None None LASP1|0.242487273|32.25%
View snps raw 21 rs1800526
dbSNP Clinvar
45714256 323.77 G C . 0/1 18 MOTIF[MA0003.1:Ap2alpha] LOW None 0.21386 0.21390 0.14723 None None None None None None AIRE|0.006628229|83.92%
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